Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34233.t1 | XP_003628551.1 | 98.4 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 5.60E-69 | 270 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34233.t1 | Q9FN32 | 69.5 | 128 | 39 | 0 | 1 | 128 | 1 | 128 | 1.8e-47 | 189.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34233.t1 | G7LDR9 | 98.4 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 4.1e-69 | 270.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene34233 | 0.809255 | 2.07E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene34233 | 0.821962 | 3.05E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene34233 | 0.811904 | 5.54E-51 | -1.69E-46 |
| MS.gene050119 | MS.gene34233 | 0.824143 | 9.47E-54 | -1.69E-46 |
| MS.gene05016 | MS.gene34233 | 0.801501 | 8.74E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene34233 | 0.802696 | 4.96E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene34233 | 0.804978 | 1.67E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene34233 | 0.806927 | 6.49E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene34233 | 0.800256 | 1.57E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene34233 | 0.807741 | 4.36E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene34233 | 0.801054 | 1.08E-48 | -1.69E-46 |
| MS.gene051368 | MS.gene34233 | 0.812747 | 3.63E-51 | -1.69E-46 |
| MS.gene051957 | MS.gene34233 | 0.803995 | 2.67E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene34233 | 0.81271 | 3.70E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene34233 | 0.825827 | 3.79E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene34233 | 0.805629 | 1.22E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene34233 | 0.800072 | 1.71E-48 | -1.69E-46 |
| MS.gene052954 | MS.gene34233 | 0.814515 | 1.48E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene34233 | 0.821674 | 3.56E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene34233 | 0.818604 | 1.80E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene34233 | 0.833924 | 4.03E-56 | -1.69E-46 |
| MS.gene053188 | MS.gene34233 | 0.811709 | 6.11E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene34233 | 0.816739 | 4.73E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene34233 | 0.811174 | 7.99E-51 | -1.69E-46 |
| MS.gene053894 | MS.gene34233 | 0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene34233 | 0.803189 | 3.93E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene34233 | 0.810111 | 1.36E-50 | -1.69E-46 |
| MS.gene054537 | MS.gene34233 | 0.800332 | 1.51E-48 | -1.69E-46 |
| MS.gene054559 | MS.gene34233 | 0.817678 | 2.91E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene34233 | 0.856057 | 4.16E-62 | -1.69E-46 |
| MS.gene054994 | MS.gene34233 | 0.807182 | 5.73E-50 | -1.69E-46 |
| MS.gene055230 | MS.gene34233 | 0.827658 | 1.39E-54 | -1.69E-46 |
| MS.gene05548 | MS.gene34233 | 0.804156 | 2.47E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene34233 | 0.810297 | 1.24E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene34233 | 0.838478 | 2.81E-57 | -1.69E-46 |
| MS.gene055841 | MS.gene34233 | 0.841938 | 3.51E-58 | -1.69E-46 |
| MS.gene05604 | MS.gene34233 | 0.814444 | 1.54E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene34233 | 0.802759 | 4.82E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene34233 | 0.824359 | 8.42E-54 | -1.69E-46 |
| MS.gene056498 | MS.gene34233 | 0.8237 | 1.20E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene34233 | 0.841758 | 3.91E-58 | -1.69E-46 |
| MS.gene057026 | MS.gene34233 | 0.824668 | 7.12E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene34233 | 0.882496 | 9.92E-71 | -1.69E-46 |
| MS.gene057208 | MS.gene34233 | 0.826755 | 2.28E-54 | -1.69E-46 |
| MS.gene057392 | MS.gene34233 | 0.802677 | 5.01E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene34233 | 0.81239 | 4.34E-51 | -1.69E-46 |
| MS.gene057555 | MS.gene34233 | 0.823395 | 1.42E-53 | -1.69E-46 |
| MS.gene057598 | MS.gene34233 | 0.81287 | 3.41E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene34233 | 0.842066 | 3.24E-58 | -1.69E-46 |
| MS.gene05795 | MS.gene34233 | 0.832123 | 1.13E-55 | -1.69E-46 |
| MS.gene058009 | MS.gene34233 | 0.80418 | 2.45E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene34233 | 0.8025 | 5.45E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene34233 | 0.805754 | 1.15E-49 | -1.69E-46 |
| MS.gene058829 | MS.gene34233 | 0.806498 | 7.99E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene34233 | 0.821075 | 4.90E-53 | -1.69E-46 |
| MS.gene059161 | MS.gene34233 | 0.801693 | 7.98E-49 | -1.69E-46 |
| MS.gene059317 | MS.gene34233 | 0.819845 | 9.38E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene34233 | 0.819374 | 1.20E-52 | -1.69E-46 |
| MS.gene059569 | MS.gene34233 | 0.839509 | 1.52E-57 | -1.69E-46 |
| MS.gene05979 | MS.gene34233 | 0.819527 | 1.11E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene34233 | 0.82217 | 2.73E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene34233 | 0.81192 | 5.50E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene34233 | 0.8256 | 4.29E-54 | -1.69E-46 |
| MS.gene060907 | MS.gene34233 | 0.813627 | 2.33E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34233.t1 | MTR_8g058785 | 98.450 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 6.38e-92 | 261 |
| MS.gene34233.t1 | MTR_8g061270 | 98.450 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 6.38e-92 | 261 |
| MS.gene34233.t1 | MTR_2g078670 | 71.094 | 128 | 37 | 0 | 1 | 128 | 1 | 128 | 6.86e-64 | 191 |
| MS.gene34233.t1 | MTR_4g088505 | 57.031 | 128 | 53 | 1 | 1 | 128 | 1 | 126 | 2.01e-48 | 151 |
| MS.gene34233.t1 | MTR_3g070330 | 52.344 | 128 | 61 | 0 | 1 | 128 | 24 | 151 | 8.08e-46 | 145 |
| MS.gene34233.t1 | MTR_3g070330 | 60.194 | 103 | 41 | 0 | 1 | 103 | 24 | 126 | 6.63e-45 | 142 |
| MS.gene34233.t1 | MTR_7g068250 | 57.273 | 110 | 47 | 0 | 1 | 110 | 1 | 110 | 2.45e-44 | 141 |
| MS.gene34233.t1 | MTR_5g082490 | 59.091 | 110 | 45 | 0 | 1 | 110 | 1 | 110 | 6.26e-44 | 140 |
| MS.gene34233.t1 | MTR_4g088505 | 61.446 | 83 | 32 | 0 | 1 | 83 | 1 | 83 | 1.45e-33 | 114 |
| MS.gene34233.t1 | MTR_3g091840 | 47.423 | 97 | 51 | 0 | 12 | 108 | 8 | 104 | 2.54e-31 | 107 |
| MS.gene34233.t1 | MTR_8g027255 | 42.857 | 98 | 56 | 0 | 9 | 106 | 5 | 102 | 2.59e-26 | 95.1 |
| MS.gene34233.t1 | MTR_1g077750 | 44.048 | 84 | 47 | 0 | 12 | 95 | 8 | 91 | 7.00e-26 | 94.0 |
| MS.gene34233.t1 | MTR_1g077760 | 42.593 | 54 | 31 | 0 | 48 | 101 | 1 | 54 | 4.98e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34233.t1 | AT5G53940 | 69.531 | 128 | 39 | 0 | 1 | 128 | 1 | 128 | 9.77e-62 | 185 |
| MS.gene34233.t1 | AT2G40110 | 55.814 | 129 | 56 | 1 | 1 | 128 | 1 | 129 | 4.28e-47 | 148 |
| MS.gene34233.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 1.43e-46 | 147 |
| MS.gene34233.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 1.43e-46 | 147 |
| MS.gene34233.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 1.43e-46 | 147 |
| MS.gene34233.t1 | AT2G40110 | 64.706 | 102 | 36 | 0 | 1 | 102 | 1 | 102 | 1.57e-46 | 146 |
| MS.gene34233.t1 | AT3G55890 | 58.095 | 105 | 44 | 0 | 1 | 105 | 1 | 105 | 7.29e-42 | 135 |
| MS.gene34233.t1 | AT3G55890 | 58.095 | 105 | 44 | 0 | 1 | 105 | 1 | 105 | 7.29e-42 | 135 |
| MS.gene34233.t1 | AT3G55890 | 59.406 | 101 | 41 | 0 | 1 | 101 | 1 | 101 | 2.34e-41 | 133 |
| MS.gene34233.t1 | AT3G55890 | 59.406 | 101 | 41 | 0 | 1 | 101 | 1 | 101 | 2.34e-41 | 133 |
| MS.gene34233.t1 | AT3G11230 | 50.781 | 128 | 63 | 0 | 1 | 128 | 1 | 128 | 4.74e-41 | 133 |
| MS.gene34233.t1 | AT3G11230 | 50.781 | 128 | 63 | 0 | 1 | 128 | 34 | 161 | 1.82e-40 | 132 |
| MS.gene34233.t1 | AT3G11230 | 57.843 | 102 | 43 | 0 | 1 | 102 | 1 | 102 | 1.56e-39 | 128 |
| MS.gene34233.t1 | AT3G11230 | 57.843 | 102 | 43 | 0 | 1 | 102 | 34 | 135 | 2.86e-39 | 129 |
| MS.gene34233.t1 | AT2G40110 | 61.446 | 83 | 32 | 0 | 1 | 83 | 1 | 83 | 1.99e-35 | 117 |
| MS.gene34233.t1 | AT2G40110 | 61.446 | 83 | 32 | 0 | 1 | 83 | 1 | 83 | 1.99e-35 | 117 |
| MS.gene34233.t1 | AT4G27745 | 45.192 | 104 | 57 | 0 | 5 | 108 | 1 | 104 | 5.72e-31 | 107 |
| MS.gene34233.t1 | AT4G27745 | 45.192 | 104 | 57 | 0 | 5 | 108 | 1 | 104 | 5.72e-31 | 107 |
| MS.gene34233.t1 | AT4G27745 | 45.192 | 104 | 57 | 0 | 5 | 108 | 1 | 104 | 5.72e-31 | 107 |
| MS.gene34233.t1 | AT4G27745 | 45.192 | 104 | 57 | 0 | 5 | 108 | 1 | 104 | 5.72e-31 | 107 |
| MS.gene34233.t1 | AT4G27740 | 39.130 | 92 | 56 | 0 | 14 | 105 | 10 | 101 | 6.54e-23 | 86.3 |
Find 22 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAAAGAGCGATGCTTTC+AGG | 0.190195 | 8.4:-47557842 | MS.gene34233:CDS |
| ACTTTCCCTCTTTGTACTTT+TGG | 0.194241 | 8.4:+47557607 | None:intergenic |
| TCCACTGAATTCTGTGTTGA+AGG | 0.319590 | 8.4:-47557444 | MS.gene34233:CDS |
| GAGCTGGATGGCAGAGTTTA+CGG | 0.331875 | 8.4:-47558666 | MS.gene34233:CDS |
| TGTCGCTGCGGTCAGATAAT+TGG | 0.336845 | 8.4:-47557791 | MS.gene34233:CDS |
| GAGTGATACTGAAGATGATT+AGG | 0.429995 | 8.4:-47557409 | None:intergenic |
| GGAAGGATCGTTGATGAAAT+CGG | 0.431542 | 8.4:-47557471 | MS.gene34233:CDS |
| ATACTTACACATTATTGAAA+AGG | 0.455887 | 8.4:+47558461 | None:intergenic |
| TTTCCACTGATCTCATCTCC+AGG | 0.460967 | 8.4:-47558614 | MS.gene34233:CDS |
| GAAAAGCCAAAAGTACAAAG+AGG | 0.465104 | 8.4:-47557613 | MS.gene34233:CDS |
| AGGGAAAGTTTGTTCTTGAA+AGG | 0.474035 | 8.4:-47557593 | MS.gene34233:intron |
| TGGAAAGAGCGATGCTTTCA+GGG | 0.476055 | 8.4:-47557841 | MS.gene34233:CDS |
| AAAAGCCAAAAGTACAAAGA+GGG | 0.574439 | 8.4:-47557612 | MS.gene34233:CDS |
| TTCCACTGATCTCATCTCCA+GGG | 0.580481 | 8.4:-47558613 | MS.gene34233:intron |
| GCTGCGGTCAGATAATTGGC+TGG | 0.590004 | 8.4:-47557787 | MS.gene34233:CDS |
| CACAGTGTGAACTTCACTAG+TGG | 0.591434 | 8.4:-47557872 | MS.gene34233:intron |
| CTTCACTAGTGGAGAAGTGG+TGG | 0.595583 | 8.4:-47557861 | MS.gene34233:CDS |
| TCTCTCATAGGAAACTGTGC+AGG | 0.598241 | 8.4:-47557637 | MS.gene34233:intron |
| TGAGATCAGTGGAAAGAGCA+AGG | 0.604806 | 8.4:+47558622 | None:intergenic |
| GCCTTCAACACAGAATTCAG+TGG | 0.633670 | 8.4:+47557443 | None:intergenic |
| TACCCTGGAGATGAGATCAG+TGG | 0.654916 | 8.4:+47558611 | None:intergenic |
| GAACTTCACTAGTGGAGAAG+TGG | 0.657506 | 8.4:-47557864 | MS.gene34233:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAATCTAATTCTAATAT+CGG | + | chr8.4:47558120-47558139 | None:intergenic | 15.0% |
| !!! | TTCAATTTTTTTGGTTAATT+AGG | - | chr8.4:47557531-47557550 | MS.gene34233:intron | 15.0% |
| !! | ATACTTACACATTATTGAAA+AGG | + | chr8.4:47557639-47557658 | None:intergenic | 20.0% |
| !! | TAGATTTGTAAAAATATGAG+AGG | + | chr8.4:47558358-47558377 | None:intergenic | 20.0% |
| !! | TCAATAATGGTATTATAGTA+AGG | - | chr8.4:47557739-47557758 | MS.gene34233:intron | 20.0% |
| !! | TGTATGTTAAGTTATATACT+GGG | - | chr8.4:47557915-47557934 | MS.gene34233:intron | 20.0% |
| !! | TTAACCAAAAAAATTGAAGA+AGG | + | chr8.4:47557529-47557548 | None:intergenic | 20.0% |
| !! | TTGTATGTTAAGTTATATAC+TGG | - | chr8.4:47557914-47557933 | MS.gene34233:intron | 20.0% |
| !!! | AATGCAATTTTATTTTCAAC+TGG | + | chr8.4:47557795-47557814 | None:intergenic | 20.0% |
| !!! | GACAGTTTTATTATCAATAA+TGG | - | chr8.4:47557726-47557745 | MS.gene34233:intron | 20.0% |
| ! | AGAAGAAAAGCAAACAATAA+GGG | + | chr8.4:47557584-47557603 | None:intergenic | 25.0% |
| ! | AGATAAGTATTTCAACATTC+AGG | + | chr8.4:47558041-47558060 | None:intergenic | 25.0% |
| ! | ATCAGTAAAAACACACATTA+AGG | + | chr8.4:47558576-47558595 | None:intergenic | 25.0% |
| ! | GATAAGTATTTCAACATTCA+GGG | + | chr8.4:47558040-47558059 | None:intergenic | 25.0% |
| ! | TTTGTAAAAATATGAGAGGA+TGG | + | chr8.4:47558354-47558373 | None:intergenic | 25.0% |
| !!! | CATTTAAGATTTGTTACTGA+TGG | + | chr8.4:47557689-47557708 | None:intergenic | 25.0% |
| !!! | TGATCCTTCTTCAATTTTTT+TGG | - | chr8.4:47557522-47557541 | MS.gene34233:intron | 25.0% |
| AAACAATAAGGGTTAACGAA+TGG | + | chr8.4:47557573-47557592 | None:intergenic | 30.0% | |
| GAGAAGAAAAGCAAACAATA+AGG | + | chr8.4:47557585-47557604 | None:intergenic | 30.0% | |
| TAAAATTGCATCTCTCTCAT+AGG | - | chr8.4:47558448-47558467 | MS.gene34233:intron | 30.0% | |
| ! | AAAAGCCAAAAGTACAAAGA+GGG | - | chr8.4:47558485-47558504 | MS.gene34233:CDS | 30.0% |
| ! | TTTAGAAGGATCAAAAGTAC+TGG | + | chr8.4:47558432-47558451 | None:intergenic | 30.0% |
| !! | ATTGTTTGCTTTTCTTCTCA+GGG | - | chr8.4:47557586-47557605 | MS.gene34233:intron | 30.0% |
| !! | TATTGTTTGCTTTTCTTCTC+AGG | - | chr8.4:47557585-47557604 | MS.gene34233:intron | 30.0% |
| CATGATATGATATGATACCC+TGG | + | chr8.4:47557504-47557523 | None:intergenic | 35.0% | |
| CTCAACAAATTGAAATGCCT+CGG | + | chr8.4:47557881-47557900 | None:intergenic | 35.0% | |
| GTAAAAATATGAGAGGATGG+TGG | + | chr8.4:47558351-47558370 | None:intergenic | 35.0% | |
| TATACTGGGATTGTTGTAAC+TGG | - | chr8.4:47557929-47557948 | MS.gene34233:intron | 35.0% | |
| TATCTGCAAACTAGTGTTGT+AGG | - | chr8.4:47558378-47558397 | MS.gene34233:intron | 35.0% | |
| ! | ACTTTCCCTCTTTGTACTTT+TGG | + | chr8.4:47558493-47558512 | None:intergenic | 35.0% |
| ! | AGGGAAAGTTTGTTCTTGAA+AGG | - | chr8.4:47558504-47558523 | MS.gene34233:intron | 35.0% |
| ! | AGTTTTCATGGTTGAATGGT+GGG | - | chr8.4:47557962-47557981 | MS.gene34233:intron | 35.0% |
| ! | CAGGGATTTTATTGTCATAG+AGG | - | chr8.4:47557604-47557623 | MS.gene34233:CDS | 35.0% |
| ! | GAAAAGCCAAAAGTACAAAG+AGG | - | chr8.4:47558484-47558503 | MS.gene34233:CDS | 35.0% |
| ! | GAGAGAGATGCAATTTTAGA+AGG | + | chr8.4:47558446-47558465 | None:intergenic | 35.0% |
| ! | TGTCAGTTTTCATGGTTGAA+TGG | - | chr8.4:47557958-47557977 | MS.gene34233:intron | 35.0% |
| !! | GATATATTTTGTTGTCGCTG+CGG | - | chr8.4:47558294-47558313 | MS.gene34233:intron | 35.0% |
| ACAAAACTCCCACATACGTA+AGG | + | chr8.4:47558001-47558020 | None:intergenic | 40.0% | |
| ACGATCCTTCCTCTGTTAAA+TGG | + | chr8.4:47558617-47558636 | None:intergenic | 40.0% | |
| CATGCTTGTCCATTTAACAG+AGG | - | chr8.4:47558605-47558624 | MS.gene34233:intron | 40.0% | |
| CTAATACCAAACTAATGCCG+AGG | - | chr8.4:47557861-47557880 | MS.gene34233:CDS | 40.0% | |
| CTTGTCCATTTAACAGAGGA+AGG | - | chr8.4:47558609-47558628 | MS.gene34233:intron | 40.0% | |
| TCCACTGAATTCTGTGTTGA+AGG | - | chr8.4:47558653-47558672 | MS.gene34233:CDS | 40.0% | |
| ! | ATTTTTGCAGTTGAGCTGGA+TGG | - | chr8.4:47557419-47557438 | MS.gene34233:CDS | 40.0% |
| ! | CAGTTTTCATGGTTGAATGG+TGG | - | chr8.4:47557961-47557980 | MS.gene34233:intron | 40.0% |
| ! | CATGTGCATGCTTGTGTTTT+TGG | - | chr8.4:47558195-47558214 | MS.gene34233:intron | 40.0% |
| ! | GAGAATTTTTGCAGTTGAGC+TGG | - | chr8.4:47557415-47557434 | MS.gene34233:CDS | 40.0% |
| ! | GGAAGGATCGTTGATGAAAT+CGG | - | chr8.4:47558626-47558645 | MS.gene34233:CDS | 40.0% |
| !! | TATGTGGGAGTTTTGTACAC+CGG | - | chr8.4:47558005-47558024 | MS.gene34233:intron | 40.0% |
| ACATACGTAAGGTCCTGGAA+AGG | + | chr8.4:47557990-47558009 | None:intergenic | 45.0% | |
| CACAGTGTGAACTTCACTAG+TGG | - | chr8.4:47558225-47558244 | MS.gene34233:intron | 45.0% | |
| CATACGTAAGGTCCTGGAAA+GGG | + | chr8.4:47557989-47558008 | None:intergenic | 45.0% | |
| GAAATGCCTCGGCATTAGTT+TGG | + | chr8.4:47557870-47557889 | None:intergenic | 45.0% | |
| GAACTTCACTAGTGGAGAAG+TGG | - | chr8.4:47558233-47558252 | MS.gene34233:intron | 45.0% | |
| GCCTTCAACACAGAATTCAG+TGG | + | chr8.4:47558657-47558676 | None:intergenic | 45.0% | |
| GTGAAGTTCACACTGTGTCA+TGG | + | chr8.4:47558222-47558241 | None:intergenic | 45.0% | |
| TCTCTCATAGGAAACTGTGC+AGG | - | chr8.4:47558460-47558479 | MS.gene34233:intron | 45.0% | |
| TGAGATCAGTGGAAAGAGCA+AGG | + | chr8.4:47557478-47557497 | None:intergenic | 45.0% | |
| TGGAAAGAGCGATGCTTTCA+GGG | - | chr8.4:47558256-47558275 | MS.gene34233:intron | 45.0% | |
| TTCCACTGATCTCATCTCCA+GGG | - | chr8.4:47557484-47557503 | MS.gene34233:intron | 45.0% | |
| TTCCAGGACCTTACGTATGT+GGG | - | chr8.4:47557990-47558009 | MS.gene34233:intron | 45.0% | |
| TTTCCACTGATCTCATCTCC+AGG | - | chr8.4:47557483-47557502 | MS.gene34233:intron | 45.0% | |
| TTTCCAGGACCTTACGTATG+TGG | - | chr8.4:47557989-47558008 | MS.gene34233:intron | 45.0% | |
| ! | AAGAGCAAGGTGAGTTTTGC+AGG | + | chr8.4:47557465-47557484 | None:intergenic | 45.0% |
| ! | ATTCTGCGTCTGTGTTGATG+TGG | - | chr8.4:47557812-47557831 | MS.gene34233:CDS | 45.0% |
| !!! | GGCTAGCTTGTCAGTTTTCA+TGG | - | chr8.4:47557950-47557969 | MS.gene34233:intron | 45.0% |
| CTTCACTAGTGGAGAAGTGG+TGG | - | chr8.4:47558236-47558255 | MS.gene34233:intron | 50.0% | |
| GAGCTGGATGGCAGAGTTTA+CGG | - | chr8.4:47557431-47557450 | MS.gene34233:CDS | 50.0% | |
| GTGGAAAGAGCGATGCTTTC+AGG | - | chr8.4:47558255-47558274 | MS.gene34233:intron | 50.0% | |
| TACCCTGGAGATGAGATCAG+TGG | + | chr8.4:47557489-47557508 | None:intergenic | 50.0% | |
| TGTCGCTGCGGTCAGATAAT+TGG | - | chr8.4:47558306-47558325 | MS.gene34233:intron | 50.0% | |
| !! | TGGGAGTTTTGTACACCGGA+CGG | - | chr8.4:47558009-47558028 | MS.gene34233:intron | 50.0% |
| CTCCCACATACGTAAGGTCC+TGG | + | chr8.4:47557995-47558014 | None:intergenic | 55.0% | |
| GCTGCGGTCAGATAATTGGC+TGG | - | chr8.4:47558310-47558329 | MS.gene34233:intron | 55.0% | |
| ! | TGAATGGTGGGACCCTTTCC+AGG | - | chr8.4:47557974-47557993 | MS.gene34233:intron | 55.0% |
| !! | GGGAGTTTTGTACACCGGAC+GGG | - | chr8.4:47558010-47558029 | MS.gene34233:intron | 55.0% |
| ACATTCAGGGCAGTCCCGTC+CGG | + | chr8.4:47558027-47558046 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 47557410 | 47558709 | 47557410 | ID=MS.gene34233 |
| chr8.4 | mRNA | 47557410 | 47558709 | 47557410 | ID=MS.gene34233.t1;Parent=MS.gene34233 |
| chr8.4 | exon | 47558614 | 47558709 | 47558614 | ID=MS.gene34233.t1.exon1;Parent=MS.gene34233.t1 |
| chr8.4 | CDS | 47558614 | 47558709 | 47558614 | ID=cds.MS.gene34233.t1;Parent=MS.gene34233.t1 |
| chr8.4 | exon | 47558469 | 47558512 | 47558469 | ID=MS.gene34233.t1.exon2;Parent=MS.gene34233.t1 |
| chr8.4 | CDS | 47558469 | 47558512 | 47558469 | ID=cds.MS.gene34233.t1;Parent=MS.gene34233.t1 |
| chr8.4 | exon | 47557781 | 47557889 | 47557781 | ID=MS.gene34233.t1.exon3;Parent=MS.gene34233.t1 |
| chr8.4 | CDS | 47557781 | 47557889 | 47557781 | ID=cds.MS.gene34233.t1;Parent=MS.gene34233.t1 |
| chr8.4 | exon | 47557594 | 47557649 | 47557594 | ID=MS.gene34233.t1.exon4;Parent=MS.gene34233.t1 |
| chr8.4 | CDS | 47557594 | 47557649 | 47557594 | ID=cds.MS.gene34233.t1;Parent=MS.gene34233.t1 |
| chr8.4 | exon | 47557410 | 47557494 | 47557410 | ID=MS.gene34233.t1.exon5;Parent=MS.gene34233.t1 |
| chr8.4 | CDS | 47557410 | 47557494 | 47557410 | ID=cds.MS.gene34233.t1;Parent=MS.gene34233.t1 |
| Gene Sequence |
| Protein sequence |
