Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31231.t1 | XP_028762943.1 | 62 | 350 | 79 | 3 | 1 | 298 | 1 | 348 | 3.90E-113 | 417.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31231.t1 | A0A1U8KII2 | 57.1 | 336 | 92 | 3 | 1 | 284 | 1 | 336 | 9.3e-101 | 376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene31231 | 0.827611 | 1.42E-54 | -1.69E-46 |
| MS.gene049272 | MS.gene31231 | 0.840192 | 1.01E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene31231 | 0.813886 | 2.04E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene31231 | 0.805835 | 1.10E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene31231 | 0.803074 | 4.15E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene31231 | 0.807014 | 6.22E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene31231 | 0.815417 | 9.34E-52 | -1.69E-46 |
| MS.gene049977 | MS.gene31231 | 0.803654 | 3.14E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene31231 | 0.833054 | 6.65E-56 | -1.69E-46 |
| MS.gene050156 | MS.gene31231 | 0.818794 | 1.63E-52 | -1.69E-46 |
| MS.gene050221 | MS.gene31231 | 0.840369 | 9.06E-58 | -1.69E-46 |
| MS.gene050355 | MS.gene31231 | 0.800385 | 1.48E-48 | -1.69E-46 |
| MS.gene050559 | MS.gene31231 | 0.814584 | 1.43E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene31231 | 0.819333 | 1.23E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene31231 | 0.81345 | 2.54E-51 | -1.69E-46 |
| MS.gene050657 | MS.gene31231 | 0.819227 | 1.30E-52 | -1.69E-46 |
| MS.gene051147 | MS.gene31231 | 0.80729 | 5.43E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene31231 | 0.802848 | 4.62E-49 | -1.69E-46 |
| MS.gene05125 | MS.gene31231 | 0.81105 | 8.50E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene31231 | 0.836705 | 8.00E-57 | -1.69E-46 |
| MS.gene051710 | MS.gene31231 | 0.803051 | 4.19E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene31231 | 0.807913 | 4.01E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene31231 | 0.805541 | 1.27E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene31231 | 0.800941 | 1.14E-48 | -1.69E-46 |
| MS.gene051800 | MS.gene31231 | 0.803965 | 2.71E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene31231 | 0.804677 | 1.93E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene31231 | 0.810352 | 1.20E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene31231 | 0.802067 | 6.69E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene31231 | 0.819737 | 9.93E-53 | -1.69E-46 |
| MS.gene053164 | MS.gene31231 | 0.80593 | 1.05E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene31231 | 0.808996 | 2.35E-50 | -1.69E-46 |
| MS.gene053201 | MS.gene31231 | 0.818777 | 1.64E-52 | -1.69E-46 |
| MS.gene053966 | MS.gene31231 | 0.802765 | 4.80E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene31231 | 0.811977 | 5.34E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene31231 | 0.811423 | 7.05E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene31231 | 0.842785 | 2.09E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene31231 | 0.833594 | 4.88E-56 | -1.69E-46 |
| MS.gene05423 | MS.gene31231 | 0.810703 | 1.01E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene31231 | 0.812596 | 3.92E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene31231 | 0.808745 | 2.66E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene31231 | 0.843684 | 1.20E-58 | -1.69E-46 |
| MS.gene054775 | MS.gene31231 | 0.802546 | 5.33E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene31231 | 0.823122 | 1.64E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene31231 | 0.812619 | 3.87E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene31231 | 0.819886 | 9.18E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene31231 | 0.801591 | 8.38E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene31231 | 0.822067 | 2.89E-53 | -1.69E-46 |
| MS.gene055875 | MS.gene31231 | 0.82113 | 4.76E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene31231 | 0.804531 | 2.07E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene31231 | 0.819094 | 1.39E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene31231 | 0.807166 | 5.77E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene31231 | 0.829928 | 3.91E-55 | -1.69E-46 |
| MS.gene056595 | MS.gene31231 | 0.820413 | 6.95E-53 | -1.69E-46 |
| MS.gene056854 | MS.gene31231 | 0.802083 | 6.64E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene31231 | 0.807829 | 4.18E-50 | -1.69E-46 |
| MS.gene057021 | MS.gene31231 | 0.800105 | 1.68E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene31231 | 0.821094 | 4.85E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene31231 | 0.830977 | 2.17E-55 | -1.69E-46 |
| MS.gene057755 | MS.gene31231 | 0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene31231 | 0.819968 | 8.79E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene31231 | 0.843087 | 1.74E-58 | -1.69E-46 |
| MS.gene058294 | MS.gene31231 | 0.81183 | 5.75E-51 | -1.69E-46 |
| MS.gene05847 | MS.gene31231 | 0.803638 | 3.17E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene31231 | 0.804961 | 1.68E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene31231 | 0.857587 | 1.47E-62 | -1.69E-46 |
| MS.gene058979 | MS.gene31231 | 0.815715 | 8.02E-52 | -1.69E-46 |
| MS.gene059015 | MS.gene31231 | 0.83146 | 1.65E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene31231 | 0.961291 | 1.57E-119 | -1.69E-46 |
| MS.gene059276 | MS.gene31231 | 0.814122 | 1.81E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene31231 | 0.803073 | 4.15E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene31231 | 0.838663 | 2.52E-57 | -1.69E-46 |
| MS.gene059601 | MS.gene31231 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene31231 | 0.820032 | 8.50E-53 | -1.69E-46 |
| MS.gene060011 | MS.gene31231 | 0.807532 | 4.83E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene31231 | 0.845215 | 4.67E-59 | -1.69E-46 |
| MS.gene060312 | MS.gene31231 | 0.829549 | 4.84E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene31231 | 0.827477 | 1.53E-54 | -1.69E-46 |
| MS.gene060373 | MS.gene31231 | 0.80787 | 4.09E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene31231 | 0.811911 | 5.52E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene31231 | 0.821817 | 3.30E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31231.t1 | MTR_7g062720 | 65.909 | 132 | 45 | 0 | 1 | 132 | 1 | 132 | 2.25e-60 | 190 |
| MS.gene31231.t1 | MTR_5g061150 | 62.992 | 127 | 47 | 0 | 20 | 146 | 10 | 136 | 6.08e-49 | 159 |
| MS.gene31231.t1 | MTR_4g037355 | 50.000 | 116 | 17 | 2 | 151 | 225 | 1 | 116 | 1.88e-26 | 101 |
| MS.gene31231.t1 | MTR_4g112730 | 75.410 | 61 | 15 | 0 | 138 | 198 | 1 | 61 | 7.35e-25 | 95.9 |
| MS.gene31231.t1 | MTR_1g036690 | 58.537 | 82 | 27 | 3 | 218 | 298 | 5 | 80 | 2.67e-23 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAGGCTCTTAATATTTC+TGG | 0.080746 | 2.4:+7151283 | MS.gene31231:CDS |
| TTCGGCATTTAAATGAATTT+TGG | 0.166319 | 2.4:-7151335 | None:intergenic |
| CACTTCAAAATAAGGATAAA+AGG | 0.234592 | 2.4:+7152178 | MS.gene31231:CDS |
| CCAACAATCACTTCAAAATA+AGG | 0.244294 | 2.4:+7152170 | MS.gene31231:CDS |
| TAGAAGATCCAAAAGATCTT+TGG | 0.269782 | 2.4:+7151473 | MS.gene31231:CDS |
| TATTTCTGGAAATAATTATC+TGG | 0.282933 | 2.4:+7151297 | MS.gene31231:CDS |
| ATGGTTGTATTTGCGTTTAC+AGG | 0.299146 | 2.4:+7151558 | MS.gene31231:CDS |
| TATAGTTGGGGTTCTATTCC+TGG | 0.328430 | 2.4:-7152332 | None:intergenic |
| TAAAGATCAACAAGATGTTT+TGG | 0.333763 | 2.4:-7152147 | None:intergenic |
| TGAAGATGATTATGGTAATA+TGG | 0.338642 | 2.4:+7152230 | MS.gene31231:CDS |
| CTGGAAATAATTATCTGGCT+TGG | 0.347827 | 2.4:+7151302 | MS.gene31231:CDS |
| TGGAAATAATTATCTGGCTT+GGG | 0.361577 | 2.4:+7151303 | MS.gene31231:CDS |
| TTTGGGAAAATTTAAAAGAA+AGG | 0.385472 | 2.4:+7151491 | MS.gene31231:CDS |
| AACCATTCGTTACGAGCATT+AGG | 0.390171 | 2.4:-7151541 | None:intergenic |
| AGAAGATCCAAAAGATCTTT+GGG | 0.393236 | 2.4:+7151474 | MS.gene31231:CDS |
| GAAAATGATGAAGATGATTA+TGG | 0.394855 | 2.4:+7152222 | MS.gene31231:CDS |
| TGCTATCGTTGTGGAGGAAA+AGG | 0.414829 | 2.4:+7152099 | MS.gene31231:CDS |
| CCTTCGTCACCACCTTCATA+AGG | 0.433246 | 2.4:+7151426 | MS.gene31231:CDS |
| CAAAACAACTGAACAACAAA+AGG | 0.454927 | 2.4:+7151387 | MS.gene31231:CDS |
| AGAAATCAGCAGCATCTAAG+TGG | 0.464577 | 2.4:-7152260 | None:intergenic |
| AATGGTATCTCCATGCCCTT+CGG | 0.470113 | 2.4:-7151353 | None:intergenic |
| AATGTTGTAAAGAATGATAT+TGG | 0.471241 | 2.4:+7152048 | MS.gene31231:CDS |
| ATTGACACTGTGTGGAGAAA+AGG | 0.483584 | 2.4:+7151633 | MS.gene31231:CDS |
| GCAGCAACAATACCGCGAAA+AGG | 0.486558 | 2.4:+7151717 | MS.gene31231:CDS |
| ACTTCAAAATAAGGATAAAA+GGG | 0.487291 | 2.4:+7152179 | MS.gene31231:CDS |
| GCTACATTCACTTCTGGGAA+TGG | 0.488554 | 2.4:-7151841 | None:intergenic |
| TACATTAGATGCATGAAAAG+TGG | 0.490606 | 2.4:-7151689 | None:intergenic |
| CAGCAACAATACCGCGAAAA+GGG | 0.491478 | 2.4:+7151718 | MS.gene31231:CDS |
| CATTTAAATGCCGAAGGGCA+TGG | 0.494088 | 2.4:+7151343 | MS.gene31231:CDS |
| GTTGTGGAGGAAAAGGTCAT+TGG | 0.504176 | 2.4:+7152106 | MS.gene31231:CDS |
| CATGGAGATACCATTAAAGA+AGG | 0.521442 | 2.4:+7151361 | MS.gene31231:CDS |
| CATTAGAGATGAAAATATCC+AGG | 0.532865 | 2.4:+7152314 | MS.gene31231:CDS |
| AAAATTCATTTAAATGCCGA+AGG | 0.537172 | 2.4:+7151337 | MS.gene31231:CDS |
| TTCCTAATGCTCGTAACGAA+TGG | 0.575736 | 2.4:+7151539 | MS.gene31231:CDS |
| AACTGAACAACAAAAGGCTA+AGG | 0.582581 | 2.4:+7151393 | MS.gene31231:CDS |
| GAGAGTATTTGCTATCGTTG+TGG | 0.583351 | 2.4:+7152090 | MS.gene31231:CDS |
| ATTCGTTACGAGCATTAGGA+AGG | 0.589689 | 2.4:-7151537 | None:intergenic |
| CCTTATGAAGGTGGTGACGA+AGG | 0.598722 | 2.4:-7151426 | None:intergenic |
| AGTATTTGCTATCGTTGTGG+AGG | 0.599695 | 2.4:+7152093 | MS.gene31231:CDS |
| AATCACACGACTCGTCCCAC+TGG | 0.600994 | 2.4:+7151811 | MS.gene31231:CDS |
| GAAATCAGCAGCATCTAAGT+GGG | 0.621669 | 2.4:-7152259 | None:intergenic |
| AAATTCATTTAAATGCCGAA+GGG | 0.631745 | 2.4:+7151338 | MS.gene31231:CDS |
| GTGGTGACGAAGGAATATCA+TGG | 0.663314 | 2.4:-7151416 | None:intergenic |
| ACTTCTCTATTGACACTGTG+TGG | 0.668278 | 2.4:+7151625 | MS.gene31231:CDS |
| TGGGAATGGAGCACTACCAG+TGG | 0.672955 | 2.4:-7151827 | None:intergenic |
| GGGAATGGAGCACTACCAGT+GGG | 0.676344 | 2.4:-7151826 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTGTAAAGAATGATAT+TGG | + | chr2.4:7152048-7152067 | MS.gene31231:CDS | 20.0% |
| !! | ACTTCAAAATAAGGATAAAA+GGG | + | chr2.4:7152179-7152198 | MS.gene31231:CDS | 20.0% |
| !! | TTTGGGAAAATTTAAAAGAA+AGG | + | chr2.4:7151491-7151510 | MS.gene31231:CDS | 20.0% |
| !!! | TATTTCTGGAAATAATTATC+TGG | + | chr2.4:7151297-7151316 | MS.gene31231:CDS | 20.0% |
| ! | AAAATTCATTTAAATGCCGA+AGG | + | chr2.4:7151337-7151356 | MS.gene31231:CDS | 25.0% |
| ! | AAATTCATTTAAATGCCGAA+GGG | + | chr2.4:7151338-7151357 | MS.gene31231:CDS | 25.0% |
| ! | CACTTCAAAATAAGGATAAA+AGG | + | chr2.4:7152178-7152197 | MS.gene31231:CDS | 25.0% |
| ! | GAAAATGATGAAGATGATTA+TGG | + | chr2.4:7152222-7152241 | MS.gene31231:CDS | 25.0% |
| ! | TGAAGATGATTATGGTAATA+TGG | + | chr2.4:7152230-7152249 | MS.gene31231:CDS | 25.0% |
| !! | AAATTTTCCCAAAGATCTTT+TGG | - | chr2.4:7151484-7151503 | None:intergenic | 25.0% |
| !! | ATCATTTTCACATGCAAAAT+GGG | - | chr2.4:7152211-7152230 | None:intergenic | 25.0% |
| !! | TAAAGATCAACAAGATGTTT+TGG | - | chr2.4:7152150-7152169 | None:intergenic | 25.0% |
| !! | TTACAACATTTTTCATCTTC+TGG | - | chr2.4:7152038-7152057 | None:intergenic | 25.0% |
| !! | TTCGGCATTTAAATGAATTT+TGG | - | chr2.4:7151338-7151357 | None:intergenic | 25.0% |
| !!! | CATTTTTTAGATCCTTATGA+AGG | - | chr2.4:7151441-7151460 | None:intergenic | 25.0% |
| !!! | GAGAAAATGTGTTTTTGTTT+TGG | - | chr2.4:7152014-7152033 | None:intergenic | 25.0% |
| !!! | TAAATGAATTTTGGCATCAA+GGG | - | chr2.4:7151329-7151348 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTTCCTTCTTTAA+TGG | - | chr2.4:7151374-7151393 | None:intergenic | 25.0% |
| !!! | TTAAATGAATTTTGGCATCA+AGG | - | chr2.4:7151330-7151349 | None:intergenic | 25.0% |
| AGAAGATCCAAAAGATCTTT+GGG | + | chr2.4:7151474-7151493 | MS.gene31231:CDS | 30.0% | |
| CAAAACAACTGAACAACAAA+AGG | + | chr2.4:7151387-7151406 | MS.gene31231:CDS | 30.0% | |
| CATTAGAGATGAAAATATCC+AGG | + | chr2.4:7152314-7152333 | MS.gene31231:CDS | 30.0% | |
| CCAACAATCACTTCAAAATA+AGG | + | chr2.4:7152170-7152189 | MS.gene31231:CDS | 30.0% | |
| TACATTAGATGCATGAAAAG+TGG | - | chr2.4:7151692-7151711 | None:intergenic | 30.0% | |
| TAGAAGATCCAAAAGATCTT+TGG | + | chr2.4:7151473-7151492 | MS.gene31231:CDS | 30.0% | |
| ! | AAGATCTTTTGGATCTTCTA+TGG | - | chr2.4:7151473-7151492 | None:intergenic | 30.0% |
| ! | AGATGATCAATCTTTTCATC+AGG | - | chr2.4:7152294-7152313 | None:intergenic | 30.0% |
| ! | CATCATTTTCACATGCAAAA+TGG | - | chr2.4:7152212-7152231 | None:intergenic | 30.0% |
| ! | TGGAAATAATTATCTGGCTT+GGG | + | chr2.4:7151303-7151322 | MS.gene31231:CDS | 30.0% |
| ! | TTTGAGGCTCTTAATATTTC+TGG | + | chr2.4:7151283-7151302 | MS.gene31231:CDS | 30.0% |
| ! | TTTTTAGATCCTTATGAAGG+TGG | - | chr2.4:7151438-7151457 | None:intergenic | 30.0% |
| !! | GGTTTTAATCGTAATCACAA+TGG | + | chr2.4:7151964-7151983 | MS.gene31231:intron | 30.0% |
| !!! | CCTTATTTTGAAGTGATTGT+TGG | - | chr2.4:7152173-7152192 | None:intergenic | 30.0% |
| AACTGAACAACAAAAGGCTA+AGG | + | chr2.4:7151393-7151412 | MS.gene31231:CDS | 35.0% | |
| ATGGTTGTATTTGCGTTTAC+AGG | + | chr2.4:7151558-7151577 | MS.gene31231:CDS | 35.0% | |
| CATGGAGATACCATTAAAGA+AGG | + | chr2.4:7151361-7151380 | MS.gene31231:CDS | 35.0% | |
| CTGGAAATAATTATCTGGCT+TGG | + | chr2.4:7151302-7151321 | MS.gene31231:CDS | 35.0% | |
| ! | CCTCAAAATCAAGTTTTGCA+AGG | - | chr2.4:7151270-7151289 | None:intergenic | 35.0% |
| ! | CCTTGCAAAACTTGATTTTG+AGG | + | chr2.4:7151267-7151286 | MS.gene31231:CDS | 35.0% |
| ! | CTTTTGGATCTTCTATGGTA+AGG | - | chr2.4:7151468-7151487 | None:intergenic | 35.0% |
| !!! | ACCTTTTAAAACCCTTTTCG+CGG | - | chr2.4:7151732-7151751 | None:intergenic | 35.0% |
| AACCATTCGTTACGAGCATT+AGG | - | chr2.4:7151544-7151563 | None:intergenic | 40.0% | |
| ACTTCTCTATTGACACTGTG+TGG | + | chr2.4:7151625-7151644 | MS.gene31231:CDS | 40.0% | |
| AGAAATCAGCAGCATCTAAG+TGG | - | chr2.4:7152263-7152282 | None:intergenic | 40.0% | |
| ATTCGTTACGAGCATTAGGA+AGG | - | chr2.4:7151540-7151559 | None:intergenic | 40.0% | |
| ATTGACACTGTGTGGAGAAA+AGG | + | chr2.4:7151633-7151652 | MS.gene31231:CDS | 40.0% | |
| GAAATCAGCAGCATCTAAGT+GGG | - | chr2.4:7152262-7152281 | None:intergenic | 40.0% | |
| TTCCTAATGCTCGTAACGAA+TGG | + | chr2.4:7151539-7151558 | MS.gene31231:CDS | 40.0% | |
| ! | GAAGGATGACAGTTTTCTGA+TGG | - | chr2.4:7151522-7151541 | None:intergenic | 40.0% |
| !! | AGTATTTGCTATCGTTGTGG+AGG | + | chr2.4:7152093-7152112 | MS.gene31231:CDS | 40.0% |
| !! | GAGAGTATTTGCTATCGTTG+TGG | + | chr2.4:7152090-7152109 | MS.gene31231:CDS | 40.0% |
| !!! | ACCGCGAAAAGGGTTTTAAA+AGG | + | chr2.4:7151728-7151747 | MS.gene31231:CDS | 40.0% |
| AATGGTATCTCCATGCCCTT+CGG | - | chr2.4:7151356-7151375 | None:intergenic | 45.0% | |
| CAGCAACAATACCGCGAAAA+GGG | + | chr2.4:7151718-7151737 | MS.gene31231:CDS | 45.0% | |
| CATTTAAATGCCGAAGGGCA+TGG | + | chr2.4:7151343-7151362 | MS.gene31231:CDS | 45.0% | |
| GATCACTATGGACAAACTCG+TGG | + | chr2.4:7151871-7151890 | MS.gene31231:intron | 45.0% | |
| GCGTTGCTACATTCACTTCT+GGG | - | chr2.4:7151849-7151868 | None:intergenic | 45.0% | |
| GTAGCAACGCATGATCACTA+TGG | + | chr2.4:7151859-7151878 | MS.gene31231:intron | 45.0% | |
| GTTGTGGAGGAAAAGGTCAT+TGG | + | chr2.4:7152106-7152125 | MS.gene31231:CDS | 45.0% | |
| TGCGTTGCTACATTCACTTC+TGG | - | chr2.4:7151850-7151869 | None:intergenic | 45.0% | |
| TGCTATCGTTGTGGAGGAAA+AGG | + | chr2.4:7152099-7152118 | MS.gene31231:CDS | 45.0% | |
| ! | GCTACATTCACTTCTGGGAA+TGG | - | chr2.4:7151844-7151863 | None:intergenic | 45.0% |
| ! | GTGGTGACGAAGGAATATCA+TGG | - | chr2.4:7151419-7151438 | None:intergenic | 45.0% |
| !!! | AAGATGTTTTGGCGTACGAC+AGG | - | chr2.4:7152139-7152158 | None:intergenic | 45.0% |
| ACGTGGTCGTGGTTATGGAA+GGG | + | chr2.4:7151930-7151949 | MS.gene31231:intron | 50.0% | |
| CCTTCGTCACCACCTTCATA+AGG | + | chr2.4:7151426-7151445 | MS.gene31231:CDS | 50.0% | |
| GCAGCAACAATACCGCGAAA+AGG | + | chr2.4:7151717-7151736 | MS.gene31231:CDS | 50.0% | |
| TATGGACAAACTCGTGGTCG+TGG | + | chr2.4:7151877-7151896 | MS.gene31231:intron | 50.0% | |
| ! | CCTTATGAAGGTGGTGACGA+AGG | - | chr2.4:7151429-7151448 | None:intergenic | 50.0% |
| ! | TATGGAAGGGGACGTGGTTT+TGG | + | chr2.4:7151943-7151962 | MS.gene31231:intron | 50.0% |
| AATCACACGACTCGTCCCAC+TGG | + | chr2.4:7151811-7151830 | MS.gene31231:CDS | 55.0% | |
| CACGTCCACGACCATAACCA+TGG | - | chr2.4:7151909-7151928 | None:intergenic | 55.0% | |
| CATGGTTATGGTCGTGGACG+TGG | + | chr2.4:7151907-7151926 | MS.gene31231:intron | 55.0% | |
| CGTGGTCGTGGTTATGGAAG+GGG | + | chr2.4:7151931-7151950 | MS.gene31231:intron | 55.0% | |
| GACGTGGTCGTGGTTATGGA+AGG | + | chr2.4:7151929-7151948 | MS.gene31231:intron | 55.0% | |
| ! | GGGAATGGAGCACTACCAGT+GGG | - | chr2.4:7151829-7151848 | None:intergenic | 55.0% |
| ! | TGGGAATGGAGCACTACCAG+TGG | - | chr2.4:7151830-7151849 | None:intergenic | 55.0% |
| CAAACTCGTGGTCGTGGTCG+TGG | + | chr2.4:7151883-7151902 | MS.gene31231:intron | 60.0% | |
| CGTGGACGTGGTCGTGGTTA+TGG | + | chr2.4:7151925-7151944 | MS.gene31231:intron | 60.0% | |
| CGTGGCCATGGTTATGGTCG+TGG | + | chr2.4:7151901-7151920 | MS.gene31231:intron | 60.0% | |
| CGTGGTCGTGGCCATGGTTA+TGG | + | chr2.4:7151895-7151914 | MS.gene31231:intron | 60.0% | |
| CGTGGTTATGGAAGGGGACG+TGG | + | chr2.4:7151937-7151956 | MS.gene31231:intron | 60.0% | |
| TATGGTCGTGGACGTGGACG+TGG | + | chr2.4:7151913-7151932 | MS.gene31231:intron | 60.0% | |
| CGTGGACGTGGACGTGGTCG+TGG | + | chr2.4:7151919-7151938 | MS.gene31231:intron | 70.0% | |
| CGTGGTCGTGGTCGTGGCCA+TGG | + | chr2.4:7151889-7151908 | MS.gene31231:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 7151259 | 7152341 | 7151259 | ID=MS.gene31231 |
| chr2.4 | mRNA | 7151259 | 7152341 | 7151259 | ID=MS.gene31231.t1;Parent=MS.gene31231 |
| chr2.4 | exon | 7151259 | 7151852 | 7151259 | ID=MS.gene31231.t1.exon1;Parent=MS.gene31231.t1 |
| chr2.4 | CDS | 7151259 | 7151852 | 7151259 | ID=cds.MS.gene31231.t1;Parent=MS.gene31231.t1 |
| chr2.4 | exon | 7152039 | 7152341 | 7152039 | ID=MS.gene31231.t1.exon2;Parent=MS.gene31231.t1 |
| chr2.4 | CDS | 7152039 | 7152341 | 7152039 | ID=cds.MS.gene31231.t1;Parent=MS.gene31231.t1 |
| Gene Sequence |
| Protein sequence |
