AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07529


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07529.t1 MTR_1g078200 99.107 224 2 0 1 224 1 224 2.44e-167 460
MS.gene07529.t1 MTR_7g405790 64.651 215 64 2 13 223 14 220 9.00e-96 279
MS.gene07529.t1 MTR_7g051940 73.889 180 47 0 13 192 12 191 8.16e-93 271
MS.gene07529.t1 MTR_4g064897 59.906 212 78 3 12 223 10 214 6.23e-88 259
MS.gene07529.t1 MTR_8g089985 62.887 194 72 0 12 205 15 208 1.20e-86 256
MS.gene07529.t1 MTR_3g086980 57.820 211 86 1 12 222 14 221 3.55e-85 252
MS.gene07529.t1 MTR_0262s0050 55.450 211 90 1 12 222 13 219 2.84e-82 244
MS.gene07529.t1 MTR_2g005510 55.556 216 91 2 8 223 9 219 3.50e-82 244
MS.gene07529.t1 MTR_1g052475 55.660 212 91 3 12 222 13 222 7.20e-82 244
MS.gene07529.t1 MTR_3g069510 55.605 223 91 4 1 223 1 215 1.24e-81 243
MS.gene07529.t1 MTR_4g079350 57.075 212 85 3 12 223 11 216 1.71e-80 240
MS.gene07529.t1 MTR_2g014990 56.604 212 86 3 12 223 11 216 4.37e-80 239
MS.gene07529.t1 MTR_2g083860 63.006 173 64 0 12 184 11 183 2.59e-79 237
MS.gene07529.t1 MTR_4g088090 55.189 212 89 3 12 223 11 216 3.80e-79 236
MS.gene07529.t1 MTR_2g075950 54.245 212 91 2 12 223 11 216 2.02e-78 234
MS.gene07529.t1 MTR_2g090865 55.660 212 87 2 12 223 9 213 9.64e-77 230
MS.gene07529.t1 MTR_8g036220 51.869 214 101 1 12 223 14 227 1.66e-76 230
MS.gene07529.t1 MTR_8g027220 59.239 184 74 1 7 190 20 202 2.32e-76 230
MS.gene07529.t1 MTR_6g079550 52.582 213 93 3 12 223 10 215 1.08e-68 210
MS.gene07529.t1 MTR_8g107070 54.315 197 89 1 12 208 12 207 1.00e-65 204
MS.gene07529.t1 MTR_7g117910 62.238 143 54 0 12 154 18 160 1.07e-64 199
MS.gene07529.t1 MTR_7g081700 45.283 212 100 3 12 223 6 201 5.97e-57 179
MS.gene07529.t1 MTR_2g027660 43.602 211 115 1 13 223 5 211 2.19e-56 178
MS.gene07529.t1 MTR_2g005500 51.807 166 80 0 12 177 7 172 3.55e-56 177
MS.gene07529.t1 MTR_1g068740 42.453 212 111 2 12 222 13 214 1.29e-55 177
MS.gene07529.t1 MTR_1g068730 42.453 212 111 2 12 222 13 214 1.42e-55 176
MS.gene07529.t1 MTR_8g006970 44.811 212 102 3 12 223 20 216 1.51e-55 176
MS.gene07529.t1 MTR_1g115325 42.326 215 107 4 12 222 13 214 1.02e-54 174
MS.gene07529.t1 MTR_6g021790 44.131 213 113 2 12 223 4 211 1.07e-54 174
MS.gene07529.t1 MTR_7g100020 49.697 165 82 1 12 175 13 177 2.29e-54 173
MS.gene07529.t1 MTR_8g006970 51.220 164 80 0 12 175 6 169 2.70e-54 172
MS.gene07529.t1 MTR_8g031660 49.701 167 84 0 10 176 2 168 4.43e-54 172
MS.gene07529.t1 MTR_2g096550 47.059 170 88 2 8 175 9 178 5.67e-52 167
MS.gene07529.t1 MTR_8g031870 50.943 159 78 0 10 168 2 160 6.53e-52 166
MS.gene07529.t1 MTR_8g031680 41.121 214 121 3 10 223 2 210 3.97e-50 162
MS.gene07529.t1 MTR_4g063160 41.121 214 112 4 12 222 13 215 1.36e-49 161
MS.gene07529.t1 MTR_3g064390 40.385 208 105 2 16 223 12 200 1.68e-48 158
MS.gene07529.t1 MTR_8g031830 49.342 152 77 0 13 164 5 156 1.90e-47 155
MS.gene07529.t1 MTR_5g076590 38.942 208 108 3 16 223 12 200 6.36e-47 154
MS.gene07529.t1 MTR_8g093740 43.716 183 100 3 12 192 11 192 2.38e-45 150
MS.gene07529.t1 MTR_4g099470 41.176 187 94 2 37 223 7 177 1.92e-44 147
MS.gene07529.t1 MTR_1g068730 50.769 130 64 0 12 141 13 142 1.97e-44 147
MS.gene07529.t1 MTR_1g094220 44.099 161 89 1 16 175 33 193 2.07e-44 147
MS.gene07529.t1 MTR_1g068740 50.769 130 64 0 12 141 13 142 2.43e-44 147
MS.gene07529.t1 MTR_1g094220 43.275 171 91 2 16 180 33 203 2.50e-44 147
MS.gene07529.t1 MTR_7g103070 40.187 214 113 5 12 223 14 214 4.46e-44 147
MS.gene07529.t1 MTR_3g096350 45.029 171 91 3 12 180 10 179 7.79e-44 146
MS.gene07529.t1 MTR_1g090717 40.183 219 105 5 12 223 13 212 1.43e-43 145
MS.gene07529.t1 MTR_1g029450 41.026 195 103 4 12 195 15 208 2.50e-43 145
MS.gene07529.t1 MTR_1g062760 41.014 217 104 6 12 222 12 210 4.09e-43 144
MS.gene07529.t1 MTR_1g094220 44.872 156 85 1 16 170 33 188 4.62e-43 144
MS.gene07529.t1 MTR_1g094220 45.161 155 84 1 16 169 33 187 1.26e-42 144
MS.gene07529.t1 MTR_2g102060 41.317 167 98 0 16 182 12 178 1.39e-42 143
MS.gene07529.t1 MTR_5g013900 39.490 157 95 0 15 171 10 166 1.65e-40 137
MS.gene07529.t1 MTR_4g098950 38.854 157 96 0 15 171 10 166 2.69e-40 137
MS.gene07529.t1 MTR_8g103550 40.625 160 95 0 16 175 11 170 3.20e-40 137
MS.gene07529.t1 MTR_3g087160 36.313 179 108 1 15 193 10 182 3.56e-40 137
MS.gene07529.t1 MTR_8g090215 38.217 157 97 0 15 171 10 166 1.66e-39 135
MS.gene07529.t1 MTR_3g096350 44.521 146 78 3 12 155 10 154 7.89e-37 127
MS.gene07529.t1 MTR_3g096350 50.413 121 57 3 12 130 10 129 1.31e-36 126
MS.gene07529.t1 MTR_3g064390 45.902 122 66 0 16 137 12 133 2.46e-35 123
MS.gene07529.t1 MTR_4g069850 36.310 168 100 3 14 174 8 175 4.57e-33 119
MS.gene07529.t1 MTR_8g092020 37.725 167 97 2 14 173 12 178 1.47e-32 117
MS.gene07529.t1 MTR_8g093740 41.333 150 86 2 45 192 10 159 6.25e-32 115
MS.gene07529.t1 MTR_1g097420 37.126 167 98 2 14 173 8 174 6.46e-32 115
MS.gene07529.t1 MTR_4g012940 35.928 167 100 3 14 173 8 174 2.89e-31 114
MS.gene07529.t1 MTR_2g101890 35.329 167 101 3 14 173 10 176 3.64e-31 114
MS.gene07529.t1 MTR_7g103070 38.235 170 90 5 56 223 2 158 3.38e-30 110
MS.gene07529.t1 MTR_6g039490 33.014 209 124 5 14 206 8 216 1.23e-29 110
MS.gene07529.t1 MTR_2g005500 38.554 166 62 1 12 177 7 132 9.25e-28 103
MS.gene07529.t1 MTR_1g097420 34.911 169 101 3 12 173 35 201 1.23e-26 102
MS.gene07529.t1 MTR_8g031810 41.346 104 47 1 13 116 5 94 2.63e-21 85.1
MS.gene07529.t1 MTR_3g107717 30.114 176 117 5 1 175 1 171 1.40e-20 86.7
MS.gene07529.t1 MTR_3g107713 30.114 176 117 5 1 175 1 171 1.52e-20 86.7
MS.gene07529.t1 MTR_3g107707 30.114 176 117 5 1 175 1 171 1.67e-20 86.3
MS.gene07529.t1 MTR_1g069245 47.368 95 46 2 27 121 109 199 1.66e-19 83.6
MS.gene07529.t1 MTR_1452s0010 41.772 79 46 0 34 112 1 79 1.80e-18 77.8
MS.gene07529.t1 MTR_2g090875 30.460 174 107 5 14 175 6 177 3.80e-18 79.3
MS.gene07529.t1 MTR_4g088055 30.233 172 106 5 14 173 6 175 4.13e-18 79.3
MS.gene07529.t1 MTR_4g073250 30.460 174 107 5 14 175 6 177 5.82e-18 79.0
MS.gene07529.t1 MTR_6g087980 28.421 190 122 5 14 191 6 193 3.40e-17 77.4
MS.gene07529.t1 MTR_2g078000 61.224 49 19 0 75 123 46 94 5.82e-17 73.9
MS.gene07529.t1 MTR_8g075240 30.114 176 105 6 14 175 6 177 7.86e-17 75.9
MS.gene07529.t1 MTR_5g022600 30.114 176 105 6 14 175 6 177 1.30e-16 75.5
MS.gene07529.t1 MTR_3g078260 28.652 178 113 6 10 175 4 179 6.68e-16 73.9
MS.gene07529.t1 MTR_1686s0010 37.975 79 49 0 34 112 1 79 1.66e-15 69.7
MS.gene07529.t1 MTR_1g059590 32.370 173 107 4 10 182 394 556 3.80e-15 74.3
MS.gene07529.t1 MTR_1g059590 32.370 173 107 4 10 182 427 589 4.52e-15 73.9
MS.gene07529.t1 MTR_4g113620 27.439 164 101 5 15 175 14 162 1.24e-14 70.5
MS.gene07529.t1 MTR_5g092060 24.862 181 129 3 4 178 93 272 9.60e-14 68.9
MS.gene07529.t1 MTR_2g078560 47.619 63 27 1 76 132 54 116 3.33e-13 67.8
MS.gene07529.t1 MTR_8g099250 60.465 43 17 0 12 54 14 56 9.71e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07529.t1 AT5G47520 85.268 224 28 2 1 223 1 220 1.51e-138 387
MS.gene07529.t1 AT2G43130 60.811 222 79 2 3 224 1 214 2.56e-95 277
MS.gene07529.t1 AT2G31680 62.443 221 79 1 3 223 1 217 1.12e-94 276
MS.gene07529.t1 AT1G05810 61.712 222 80 2 2 223 46 262 1.70e-93 275
MS.gene07529.t1 AT1G05810 61.538 221 80 2 3 223 1 216 2.94e-93 272
MS.gene07529.t1 AT3G07410 63.470 219 75 2 6 224 4 217 4.59e-93 272
MS.gene07529.t1 AT5G47960 58.685 213 81 2 12 222 13 220 1.01e-86 256
MS.gene07529.t1 AT5G65270 66.667 177 59 0 12 188 15 191 2.42e-86 255
MS.gene07529.t1 AT1G07410 57.547 212 82 3 12 223 10 213 1.01e-84 251
MS.gene07529.t1 AT5G59150 57.870 216 86 2 8 223 6 216 1.50e-84 250
MS.gene07529.t1 AT4G39990 57.277 213 85 3 12 223 15 222 1.61e-84 250
MS.gene07529.t1 AT3G12160 55.399 213 91 1 12 224 13 221 2.96e-84 249
MS.gene07529.t1 AT3G46830 57.075 212 86 1 12 223 10 216 8.84e-83 246
MS.gene07529.t1 AT3G46830 57.075 212 86 1 12 223 10 216 8.84e-83 246
MS.gene07529.t1 AT1G09630 53.812 223 95 3 1 223 1 215 2.85e-82 244
MS.gene07529.t1 AT4G18430 55.660 212 88 2 12 223 11 216 2.34e-81 242
MS.gene07529.t1 AT5G60860 57.075 212 85 2 12 223 11 216 4.18e-81 241
MS.gene07529.t1 AT1G16920 57.547 212 83 3 12 223 11 215 7.46e-81 241
MS.gene07529.t1 AT4G18800 55.660 212 85 2 12 223 11 213 3.41e-80 239
MS.gene07529.t1 AT1G28550 53.704 216 95 2 8 223 7 217 5.18e-78 234
MS.gene07529.t1 AT3G15060 54.930 213 88 3 12 223 11 216 2.97e-77 232
MS.gene07529.t1 AT1G06400 54.245 212 90 2 12 223 11 215 3.24e-77 231
MS.gene07529.t1 AT5G45750 53.302 212 92 2 12 223 11 215 1.18e-76 230
MS.gene07529.t1 AT2G33870 52.778 216 97 2 8 223 7 217 3.99e-76 229
MS.gene07529.t1 AT1G18200 52.511 219 98 2 12 224 11 229 1.05e-75 228
MS.gene07529.t1 AT1G73640 58.470 183 75 1 1 183 1 182 4.23e-73 222
MS.gene07529.t1 AT1G01200 58.427 178 71 2 12 186 26 203 1.28e-68 211
MS.gene07529.t1 AT5G59150 54.762 168 71 2 56 223 3 165 3.62e-59 184
MS.gene07529.t1 AT1G02130 45.283 212 101 3 12 223 6 202 1.55e-58 184
MS.gene07529.t1 AT3G11730 44.601 213 105 3 12 224 6 205 2.94e-57 181
MS.gene07529.t1 AT4G17170 43.128 211 116 1 13 223 5 211 9.53e-56 177
MS.gene07529.t1 AT4G35860 43.662 213 114 2 12 223 4 211 2.32e-55 176
MS.gene07529.t1 AT5G03520 44.601 213 106 3 12 223 13 214 4.04e-55 175
MS.gene07529.t1 AT3G09900 43.256 215 108 4 12 223 13 216 2.69e-54 173
MS.gene07529.t1 AT3G46060 49.412 170 85 1 12 180 13 182 5.30e-54 172
MS.gene07529.t1 AT3G46060 49.412 170 85 1 12 180 13 182 5.30e-54 172
MS.gene07529.t1 AT3G46060 49.412 170 85 1 12 180 13 182 5.30e-54 172
MS.gene07529.t1 AT3G53610 42.523 214 108 4 12 222 13 214 5.97e-54 172
MS.gene07529.t1 AT3G53610 42.523 214 108 4 12 222 13 214 5.97e-54 172
MS.gene07529.t1 AT3G53610 42.523 214 108 4 12 222 13 214 5.97e-54 172
MS.gene07529.t1 AT5G59840 49.697 165 82 1 12 175 13 177 8.37e-54 172
MS.gene07529.t1 AT4G17160 44.762 210 106 3 13 222 5 204 8.67e-54 172
MS.gene07529.t1 AT4G17530 43.396 212 104 2 12 223 6 201 9.52e-54 171
MS.gene07529.t1 AT5G47200 43.662 213 102 3 12 223 6 201 1.11e-53 171
MS.gene07529.t1 AT4G19640 38.942 208 108 3 16 223 12 200 5.82e-48 157
MS.gene07529.t1 AT3G54840 45.963 161 86 1 16 175 35 195 1.00e-45 151
MS.gene07529.t1 AT3G54840 45.625 160 86 1 17 175 2 161 1.98e-45 149
MS.gene07529.t1 AT3G54840 47.097 155 81 1 16 169 35 189 3.12e-45 149
MS.gene07529.t1 AT5G45130 42.945 163 93 0 16 178 12 174 5.65e-45 149
MS.gene07529.t1 AT5G45130 42.857 161 92 0 18 178 22 182 1.32e-43 145
MS.gene07529.t1 AT5G03530 41.014 217 106 7 12 223 11 210 1.35e-43 145
MS.gene07529.t1 AT5G03530 41.014 217 106 7 12 223 11 210 1.35e-43 145
MS.gene07529.t1 AT1G43890 45.783 166 87 3 12 175 11 175 1.05e-42 144
MS.gene07529.t1 AT1G43890 45.783 166 87 3 12 175 11 175 1.05e-42 144
MS.gene07529.t1 AT1G43890 45.783 166 87 3 12 175 11 175 1.05e-42 144
MS.gene07529.t1 AT4G39890 40.506 158 93 1 15 171 10 167 4.81e-42 142
MS.gene07529.t1 AT5G03520 41.477 176 91 3 49 223 40 204 1.27e-41 140
MS.gene07529.t1 AT2G44610 39.490 157 95 0 15 171 10 166 1.15e-40 138
MS.gene07529.t1 AT5G10260 34.450 209 125 3 15 223 10 206 1.29e-40 138
MS.gene07529.t1 AT4G35860 42.169 166 90 2 58 222 4 164 1.50e-38 131
MS.gene07529.t1 AT2G22290 36.943 157 99 0 15 171 10 166 1.24e-37 130
MS.gene07529.t1 AT3G09910 37.788 217 107 6 12 223 11 204 2.36e-37 129
MS.gene07529.t1 AT3G09910 37.788 217 107 6 12 223 11 204 2.36e-37 129
MS.gene07529.t1 AT3G09910 37.788 217 107 6 12 223 11 204 2.36e-37 129
MS.gene07529.t1 AT4G19640 43.846 130 73 0 16 145 12 141 5.25e-37 127
MS.gene07529.t1 AT4G19640 43.511 131 74 0 16 146 12 142 1.91e-36 127
MS.gene07529.t1 AT3G09910 39.572 187 104 4 12 193 11 193 4.29e-36 126
MS.gene07529.t1 AT3G09910 39.572 187 104 4 12 193 11 193 4.29e-36 126
MS.gene07529.t1 AT1G22740 38.323 167 96 2 14 173 8 174 1.32e-34 122
MS.gene07529.t1 AT5G64990 35.714 154 99 0 15 168 8 161 2.38e-33 119
MS.gene07529.t1 AT1G52280 37.647 170 99 4 14 176 8 177 3.90e-33 119
MS.gene07529.t1 AT3G18820 37.500 168 98 4 14 174 8 175 1.66e-32 117
MS.gene07529.t1 AT3G16100 37.725 167 97 3 14 173 8 174 5.93e-32 115
MS.gene07529.t1 AT4G09720 33.641 217 118 5 14 223 8 205 8.06e-31 113
MS.gene07529.t1 AT2G21880 36.970 165 97 4 14 171 9 173 8.88e-31 113
MS.gene07529.t1 AT5G64990 34.161 161 99 1 15 168 8 168 1.20e-30 112
MS.gene07529.t1 AT4G09720 32.883 222 118 5 14 223 8 210 7.72e-30 110
MS.gene07529.t1 AT5G39620 33.945 218 115 7 15 223 6 203 2.08e-29 109
MS.gene07529.t1 AT4G09720 32.456 228 117 5 14 223 8 216 4.81e-29 108
MS.gene07529.t1 AT1G49300 35.152 165 100 4 14 171 8 172 5.16e-28 105
MS.gene07529.t1 AT1G49300 35.152 165 100 4 14 171 8 172 5.16e-28 105
MS.gene07529.t1 AT5G46025 47.573 103 53 1 76 177 6 108 2.95e-25 95.9
MS.gene07529.t1 AT2G21880 35.135 148 89 4 31 171 1 148 1.12e-22 91.3
MS.gene07529.t1 AT2G21880 35.135 148 89 4 31 171 1 148 1.12e-22 91.3
MS.gene07529.t1 AT4G09720 33.690 187 98 5 44 223 4 171 1.38e-22 90.5
MS.gene07529.t1 AT4G09720 33.690 187 98 5 44 223 4 171 1.38e-22 90.5
MS.gene07529.t1 AT4G09720 33.690 187 98 5 44 223 4 171 1.38e-22 90.5
MS.gene07529.t1 AT5G55080 28.571 175 121 3 1 175 1 171 5.80e-22 90.5
MS.gene07529.t1 AT2G21880 32.121 165 97 5 14 171 9 165 5.25e-21 87.4
MS.gene07529.t1 AT2G44690 32.222 180 108 5 14 181 18 195 1.09e-20 86.7
MS.gene07529.t1 AT5G20020 31.053 190 117 7 1 189 1 177 1.18e-20 86.7
MS.gene07529.t1 AT5G20010 31.053 190 117 7 1 189 1 177 1.41e-20 86.7
MS.gene07529.t1 AT5G55190 30.114 176 117 5 1 175 1 171 1.82e-20 86.3
MS.gene07529.t1 AT4G35020 31.034 174 106 6 14 175 6 177 1.87e-17 77.8
MS.gene07529.t1 AT4G35020 31.034 174 106 6 14 175 6 177 1.87e-17 77.8
MS.gene07529.t1 AT4G35020 31.034 174 106 6 14 175 6 177 1.87e-17 77.8
MS.gene07529.t1 AT5G45970 30.233 172 106 5 14 173 6 175 2.59e-17 77.4
MS.gene07529.t1 AT4G28950 29.050 179 115 5 14 182 6 182 4.20e-17 77.0
MS.gene07529.t1 AT1G20090 30.460 174 107 6 14 175 5 176 5.34e-17 76.6
MS.gene07529.t1 AT5G62880 29.213 178 112 5 14 179 8 183 5.57e-17 77.0
MS.gene07529.t1 AT1G75840 29.885 174 108 6 14 175 6 177 6.70e-17 76.3
MS.gene07529.t1 AT3G48040 29.310 174 109 5 14 175 8 179 1.20e-16 75.9
MS.gene07529.t1 AT3G51300 30.233 172 106 6 16 175 8 177 1.77e-16 75.1
MS.gene07529.t1 AT4G35950 29.310 174 109 6 14 175 6 177 3.60e-16 74.3
MS.gene07529.t1 AT2G17800 29.310 174 109 6 14 175 6 177 5.01e-16 73.9
MS.gene07529.t1 AT2G17800 29.310 174 109 6 14 175 6 177 5.01e-16 73.9
MS.gene07529.t1 AT3G48040 29.299 157 97 5 14 158 8 162 3.74e-14 68.6
MS.gene07529.t1 AT5G62880 28.662 157 98 5 14 158 8 162 2.61e-13 66.6
MS.gene07529.t1 AT4G35020 32.456 114 74 3 16 128 8 119 5.75e-12 62.0
MS.gene07529.t1 AT4G35020 32.456 114 74 3 16 128 8 119 5.75e-12 62.0
MS.gene07529.t1 AT3G22950 31.405 121 77 3 15 134 18 133 4.09e-11 60.5
MS.gene07529.t1 AT3G22950 31.405 121 77 3 15 134 18 133 4.09e-11 60.5

Find 47 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACAAGGTTTGTTCTTTA+TGG 0.121880 1.2:+62446930 MS.gene07529:CDS
CCTATAGTTGACTTTGAATT+AGG 0.178199 1.2:-62445778 None:intergenic
CCGTTACTTCTGCATATTAT+AGG 0.220427 1.2:+62445890 MS.gene07529:CDS
CGTTACTTCTGCATATTATA+GGG 0.294694 1.2:+62445891 MS.gene07529:CDS
AAAGGGTTGTTGTTCGAAAT+AGG 0.304511 1.2:+62447143 MS.gene07529:CDS
GGGTGCAGTTGGAGCACTTC+TGG 0.313947 1.2:+62445912 MS.gene07529:CDS
GATGCTTCCTGGATTGAAAA+TGG 0.318182 1.2:+62447066 MS.gene07529:CDS
AGGAAGTTAAAGCGCAGATA+TGG 0.333773 1.2:+62445839 MS.gene07529:CDS
TCAAGAAAGACGATGCTTCC+TGG 0.368001 1.2:+62447055 MS.gene07529:CDS
TGGGAACAAGTCAGATCTTA+AGG 0.381456 1.2:+62446864 MS.gene07529:CDS
CCTAATTCAAAGTCAACTAT+AGG 0.411802 1.2:+62445778 MS.gene07529:CDS
CTTGAGACATCATAACCTTC+CGG 0.418307 1.2:-62447029 None:intergenic
AACGTTGTCACAATACTTGT+TGG 0.431302 1.2:+62446844 MS.gene07529:CDS
CGCAGATATGGGACACAGCT+GGG 0.471236 1.2:+62445851 MS.gene07529:CDS
GCGCAGATATGGGACACAGC+TGG 0.472726 1.2:+62445850 MS.gene07529:CDS
GGAAGTTAAAGCGCAGATAT+GGG 0.487077 1.2:+62445840 MS.gene07529:CDS
ACGTTGTCACAATACTTGTT+GGG 0.487177 1.2:+62446845 MS.gene07529:CDS
ATTTACTCGCAAGATTTGCC+AGG 0.491537 1.2:+62445743 MS.gene07529:CDS
TAATTGGTGATTCAGCTGTT+GGG 0.495291 1.2:+62445713 MS.gene07529:CDS
GCATATTATAGGGGTGCAGT+TGG 0.498462 1.2:+62445901 MS.gene07529:CDS
TTCTGGTATATGACATCAGC+AGG 0.502132 1.2:+62445929 MS.gene07529:CDS
TTAATTGGTGATTCAGCTGT+TGG 0.515554 1.2:+62445712 MS.gene07529:CDS
CGTCAAACGTTTGATAGCAT+TGG 0.518334 1.2:+62445952 MS.gene07529:CDS
GAAGGGGATCGATCAGCAGA+AGG 0.552374 1.2:+62447111 MS.gene07529:CDS
ACTGTTGTTCTACAACAAGA+AGG 0.557959 1.2:+62447093 MS.gene07529:CDS
ATTAGGATAAAATTCATCCC+TGG 0.561389 1.2:-62445761 None:intergenic
CGTTTGATAGCATTGGTCGA+TGG 0.567811 1.2:+62445959 MS.gene07529:CDS
CTGTTGTTCTACAACAAGAA+GGG 0.571816 1.2:+62447094 MS.gene07529:CDS
GGGACACAGCTGGGCAAGAG+AGG 0.572066 1.2:+62445860 MS.gene07529:CDS
AAATCTACAACATATTAAGC+CGG 0.576659 1.2:+62447010 MS.gene07529:CDS
AGGGGATCGATCAGCAGAAG+GGG 0.577182 1.2:+62447113 MS.gene07529:CDS
AAAGCCTTGCCTTCCGTCGT+AGG 0.577715 1.2:-62446901 None:intergenic
GTCAGATCTTAAGGATGCGA+GGG 0.590058 1.2:+62446873 MS.gene07529:CDS
AAGGGGATCGATCAGCAGAA+GGG 0.592624 1.2:+62447112 MS.gene07529:CDS
GTTACTTCTGCATATTATAG+GGG 0.598910 1.2:+62445892 MS.gene07529:CDS
AGGGAGGTACCTACGACGGA+AGG 0.599263 1.2:+62446892 MS.gene07529:CDS
GGTACCTACGACGGAAGGCA+AGG 0.609174 1.2:+62446897 MS.gene07529:CDS
TAATGAAGAAGAGAAGACAG+AGG 0.611987 1.2:+62445669 MS.gene07529:CDS
TGTTGTTCTACAACAAGAAG+GGG 0.621100 1.2:+62447095 MS.gene07529:CDS
CCTATAATATGCAGAAGTAA+CGG 0.621105 1.2:-62445890 None:intergenic
CTACAACATATTAAGCCGGA+AGG 0.622382 1.2:+62447014 MS.gene07529:CDS
TTTACTCGCAAGATTTGCCA+GGG 0.623585 1.2:+62445744 MS.gene07529:CDS
AAGGCTTTAGCTGAGGCACA+AGG 0.626187 1.2:+62446916 MS.gene07529:CDS
AGTCAGATCTTAAGGATGCG+AGG 0.626993 1.2:+62446872 MS.gene07529:CDS
AGATCTTAAGGATGCGAGGG+AGG 0.630674 1.2:+62446876 MS.gene07529:CDS
GGAAGGCAAGGCTTTAGCTG+AGG 0.683534 1.2:+62446909 MS.gene07529:CDS
TGCGAGGGAGGTACCTACGA+CGG 0.720020 1.2:+62446888 MS.gene07529:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAACGTATA+TGG - chr1.2:62446463-62446482 None:intergenic 10.0%
!! AATTATTTGTATATACTTTA+GGG + chr1.2:62446523-62446542 MS.gene07529:intron 10.0%
!! TAATTATTTGTATATACTTT+AGG + chr1.2:62446522-62446541 MS.gene07529:intron 10.0%
!!! TTTTTTTTTTTTTTAAGAAG+GGG + chr1.2:62446478-62446497 MS.gene07529:intron 10.0%
!! AAAACTTAATTCACATATAT+TGG + chr1.2:62446753-62446772 MS.gene07529:intron 15.0%
!! ATCAAAGCAAAAAAAAAAAA+AGG - chr1.2:62446730-62446749 None:intergenic 15.0%
!! ACAATAAAACTTTACATTGT+TGG - chr1.2:62446616-62446635 None:intergenic 20.0%
!! ACTCAAAAAATGGAAATTAA+CGG + chr1.2:62445814-62445833 MS.gene07529:CDS 20.0%
!! AGTCTAAGTATATGAAAATA+TGG - chr1.2:62446427-62446446 None:intergenic 20.0%
!! ATATACTTAGACTAAAATGA+GGG + chr1.2:62446434-62446453 MS.gene07529:intron 20.0%
!!! AAAAACTTTAGAAACTAAGT+TGG - chr1.2:62446326-62446345 None:intergenic 20.0%
!!! AAACTTTAGAGATTAAATTG+AGG - chr1.2:62446291-62446310 None:intergenic 20.0%
!!! AACTTTAGAGATTAAATTGA+GGG - chr1.2:62446290-62446309 None:intergenic 20.0%
!!! CAATTAAGACAATTTTGAAA+AGG - chr1.2:62445699-62445718 None:intergenic 20.0%
!!! CTTTTCAAAATTGTCTTAAT+TGG + chr1.2:62445697-62445716 MS.gene07529:CDS 20.0%
!!! TAAGCAATATTTGAAGTATA+TGG + chr1.2:62446354-62446373 MS.gene07529:intron 20.0%
!!! TAATTTCCATTTTTTGAGTT+TGG - chr1.2:62445813-62445832 None:intergenic 20.0%
! AAAAATGGAAATTAACGGAA+AGG + chr1.2:62445819-62445838 MS.gene07529:CDS 25.0%
! AAATCTACAACATATTAAGC+CGG + chr1.2:62447010-62447029 MS.gene07529:CDS 25.0%
! ACTATGTTTGAATCTTTCTT+TGG + chr1.2:62446010-62446029 MS.gene07529:intron 25.0%
! ACTTAATTCACATATATTGG+TGG + chr1.2:62446756-62446775 MS.gene07529:intron 25.0%
! CATATACTTAGACTAAAATG+AGG + chr1.2:62446433-62446452 MS.gene07529:intron 25.0%
! TTTCTCAATAAACTTGACAT+TGG + chr1.2:62446090-62446109 MS.gene07529:intron 25.0%
!! AAAATTAATGTCCCTTTTTG+GGG + chr1.2:62446141-62446160 MS.gene07529:intron 25.0%
!! GAAAATTAATGTCCCTTTTT+GGG + chr1.2:62446140-62446159 MS.gene07529:intron 25.0%
!! TGAAAATTAATGTCCCTTTT+TGG + chr1.2:62446139-62446158 MS.gene07529:intron 25.0%
!!! TATATGCTTTTAAGATGCTA+GGG + chr1.2:62446392-62446411 MS.gene07529:intron 25.0%
!!! TTGTTCTTTCTATGTTTTTG+AGG + chr1.2:62446046-62446065 MS.gene07529:intron 25.0%
AGAGTTCCAAACTCAAAAAA+TGG + chr1.2:62445804-62445823 MS.gene07529:CDS 30.0%
AGTGATACTTAAAAGGCTAA+TGG + chr1.2:62446560-62446579 MS.gene07529:intron 30.0%
ATTAGGATAAAATTCATCCC+TGG - chr1.2:62445764-62445783 None:intergenic 30.0%
CATACCATACAAGTACTATA+AGG - chr1.2:62446179-62446198 None:intergenic 30.0%
CATTAAACTTTCCCCAAAAA+GGG - chr1.2:62446155-62446174 None:intergenic 30.0%
CCTAATTCAAAGTCAACTAT+AGG + chr1.2:62445778-62445797 MS.gene07529:CDS 30.0%
CCTATAATATGCAGAAGTAA+CGG - chr1.2:62445893-62445912 None:intergenic 30.0%
CGTTACTTCTGCATATTATA+GGG + chr1.2:62445891-62445910 MS.gene07529:CDS 30.0%
GAAATGATGATTAAGTGTAC+TGG + chr1.2:62446792-62446811 MS.gene07529:intron 30.0%
GTTACTTCTGCATATTATAG+GGG + chr1.2:62445892-62445911 MS.gene07529:CDS 30.0%
TACAAAATAAAATCGCCTCA+AGG - chr1.2:62446235-62446254 None:intergenic 30.0%
TACATGTACACACATATTGA+TGG + chr1.2:62446695-62446714 MS.gene07529:intron 30.0%
TGAAGAGAGTGATACTTAAA+AGG + chr1.2:62446553-62446572 MS.gene07529:intron 30.0%
! CCTATAGTTGACTTTGAATT+AGG - chr1.2:62445781-62445800 None:intergenic 30.0%
!!! GTATATGCTTTTAAGATGCT+AGG + chr1.2:62446391-62446410 MS.gene07529:intron 30.0%
!!! TGTTTTTGAGGTAAATGATC+AGG + chr1.2:62446058-62446077 MS.gene07529:intron 30.0%
AACGTTGTCACAATACTTGT+TGG + chr1.2:62446844-62446863 MS.gene07529:CDS 35.0%
ACGTTGTCACAATACTTGTT+GGG + chr1.2:62446845-62446864 MS.gene07529:CDS 35.0%
ACTGTTGTTCTACAACAAGA+AGG + chr1.2:62447093-62447112 MS.gene07529:CDS 35.0%
ATGTCGAAGAATAACAAGAC+TGG - chr1.2:62446676-62446695 None:intergenic 35.0%
CCATTAAACTTTCCCCAAAA+AGG - chr1.2:62446156-62446175 None:intergenic 35.0%
CCGTTACTTCTGCATATTAT+AGG + chr1.2:62445890-62445909 MS.gene07529:CDS 35.0%
CTGTTGTTCTACAACAAGAA+GGG + chr1.2:62447094-62447113 MS.gene07529:CDS 35.0%
TAATGAAGAAGAGAAGACAG+AGG + chr1.2:62445669-62445688 MS.gene07529:CDS 35.0%
TGTTGTTCTACAACAAGAAG+GGG + chr1.2:62447095-62447114 MS.gene07529:CDS 35.0%
! AGTCTTTCCATTTTCAATCC+AGG - chr1.2:62447076-62447095 None:intergenic 35.0%
! GGCTAATGGTGTACTATTTT+AGG + chr1.2:62446574-62446593 MS.gene07529:intron 35.0%
! TAATTGGTGATTCAGCTGTT+GGG + chr1.2:62445713-62445732 MS.gene07529:CDS 35.0%
! TTAATTGGTGATTCAGCTGT+TGG + chr1.2:62445712-62445731 MS.gene07529:CDS 35.0%
!! ATGGCCTTATAGTACTTGTA+TGG + chr1.2:62446172-62446191 MS.gene07529:intron 35.0%
!! CCTTTTTGGGGAAAGTTTAA+TGG + chr1.2:62446153-62446172 MS.gene07529:intron 35.0%
AGGAAGTTAAAGCGCAGATA+TGG + chr1.2:62445839-62445858 MS.gene07529:CDS 40.0%
ATTTACTCGCAAGATTTGCC+AGG + chr1.2:62445743-62445762 MS.gene07529:CDS 40.0%
CCTCAAGGAAAAGAATGAAG+AGG - chr1.2:62446220-62446239 None:intergenic 40.0%
CTACAACATATTAAGCCGGA+AGG + chr1.2:62447014-62447033 MS.gene07529:CDS 40.0%
CTTGAGACATCATAACCTTC+CGG - chr1.2:62447032-62447051 None:intergenic 40.0%
GATGCTTCCTGGATTGAAAA+TGG + chr1.2:62447066-62447085 MS.gene07529:CDS 40.0%
GGAAGTTAAAGCGCAGATAT+GGG + chr1.2:62445840-62445859 MS.gene07529:CDS 40.0%
TGGGAACAAGTCAGATCTTA+AGG + chr1.2:62446864-62446883 MS.gene07529:CDS 40.0%
TTCTGGTATATGACATCAGC+AGG + chr1.2:62445929-62445948 MS.gene07529:CDS 40.0%
TTTACTCGCAAGATTTGCCA+GGG + chr1.2:62445744-62445763 MS.gene07529:CDS 40.0%
! CCTCTTCATTCTTTTCCTTG+AGG + chr1.2:62446217-62446236 MS.gene07529:intron 40.0%
! CGTCAAACGTTTGATAGCAT+TGG + chr1.2:62445952-62445971 MS.gene07529:CDS 40.0%
! GGCACAAGGTTTGTTCTTTA+TGG + chr1.2:62446930-62446949 MS.gene07529:CDS 40.0%
AGCAGAAGGGGAGACAAAAA+AGG + chr1.2:62447125-62447144 MS.gene07529:CDS 45.0%
AGTCAGATCTTAAGGATGCG+AGG + chr1.2:62446872-62446891 MS.gene07529:CDS 45.0%
GCAGAAGGGGAGACAAAAAA+GGG + chr1.2:62447126-62447145 MS.gene07529:CDS 45.0%
GTCAGATCTTAAGGATGCGA+GGG + chr1.2:62446873-62446892 MS.gene07529:CDS 45.0%
TCAAGAAAGACGATGCTTCC+TGG + chr1.2:62447055-62447074 MS.gene07529:CDS 45.0%
! GCATATTATAGGGGTGCAGT+TGG + chr1.2:62445901-62445920 MS.gene07529:CDS 45.0%
!! CGTTTGATAGCATTGGTCGA+TGG + chr1.2:62445959-62445978 MS.gene07529:CDS 45.0%
!!! TTTTTTTTTTTTTTTAAGAA+GGG + chr1.2:62446477-62446496 MS.gene07529:intron 5.0%
!!! TTTTTTTTTTTTTTTTAAGA+AGG + chr1.2:62446476-62446495 MS.gene07529:intron 5.0%
AAGGGGATCGATCAGCAGAA+GGG + chr1.2:62447112-62447131 MS.gene07529:CDS 50.0%
AGATCTTAAGGATGCGAGGG+AGG + chr1.2:62446876-62446895 MS.gene07529:CDS 50.0%
! AAGGCTTTAGCTGAGGCACA+AGG + chr1.2:62446916-62446935 MS.gene07529:CDS 50.0%
AAAGCCTTGCCTTCCGTCGT+AGG - chr1.2:62446904-62446923 None:intergenic 55.0%
AGGGGATCGATCAGCAGAAG+GGG + chr1.2:62447113-62447132 MS.gene07529:CDS 55.0%
CGCAGATATGGGACACAGCT+GGG + chr1.2:62445851-62445870 MS.gene07529:CDS 55.0%
GAAGGGGATCGATCAGCAGA+AGG + chr1.2:62447111-62447130 MS.gene07529:CDS 55.0%
! GGAAGGCAAGGCTTTAGCTG+AGG + chr1.2:62446909-62446928 MS.gene07529:CDS 55.0%
GCGCAGATATGGGACACAGC+TGG + chr1.2:62445850-62445869 MS.gene07529:CDS 60.0%
GGTACCTACGACGGAAGGCA+AGG + chr1.2:62446897-62446916 MS.gene07529:CDS 60.0%
! GGGTGCAGTTGGAGCACTTC+TGG + chr1.2:62445912-62445931 MS.gene07529:CDS 60.0%
!! AGGGAGGTACCTACGACGGA+AGG + chr1.2:62446892-62446911 MS.gene07529:CDS 60.0%
!! TGCGAGGGAGGTACCTACGA+CGG + chr1.2:62446888-62446907 MS.gene07529:CDS 60.0%
GGGACACAGCTGGGCAAGAG+AGG + chr1.2:62445860-62445879 MS.gene07529:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 62445658 62447164 62445658 ID=MS.gene07529
chr1.2 mRNA 62445658 62447164 62445658 ID=MS.gene07529.t1;Parent=MS.gene07529
chr1.2 exon 62445658 62445997 62445658 ID=MS.gene07529.t1.exon1;Parent=MS.gene07529.t1
chr1.2 CDS 62445658 62445997 62445658 ID=cds.MS.gene07529.t1;Parent=MS.gene07529.t1
chr1.2 exon 62446830 62447164 62446830 ID=MS.gene07529.t1.exon2;Parent=MS.gene07529.t1
chr1.2 CDS 62446830 62447164 62446830 ID=cds.MS.gene07529.t1;Parent=MS.gene07529.t1
Gene Sequence

>MS.gene07529

ATGGCATTTAATAATGAAGAAGAGAAGACAGAGGATTACCTTTTCAAAATTGTCTTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTACTCGCAAGATTTGCCAGGGATGAATTTTATCCTAATTCAAAGTCAACTATAGGAGTAGAGTTCCAAACTCAAAAAATGGAAATTAACGGAAAGGAAGTTAAAGCGCAGATATGGGACACAGCTGGGCAAGAGAGGTTCAGAGCCGTTACTTCTGCATATTATAGGGGTGCAGTTGGAGCACTTCTGGTATATGACATCAGCAGGCGTCAAACGTTTGATAGCATTGGTCGATGGCTTAACGAACTTCACAGTAAGAATTATAACTATGTTTGAATCTTTCTTTGGCTTGAAATTTTTCTTGTTCTTTCTATGTTTTTGAGGTAAATGATCAGGAACTGTTAATTTCTCAATAAACTTGACATTGGTACAATATAGAAAACATTTATGATACTGAAAATTAATGTCCCTTTTTGGGGAAAGTTTAATGGCCTTATAGTACTTGTATGGTATGTAAATAAACAAAATTATGCCTCTTCATTCTTTTCCTTGAGGCGATTTTATTTTGTAAATACTGAATTGCAAATTTTCATTTGAATAAACCCTCAATTTAATCTCTAAAGTTTCACTCTCTTTCTCCAACTTAGTTTCTAAAGTTTTTAAAAAGAGTAAGCAATATTTGAAGTATATGGAACTCGTCGCTTTAGTATATGCTTTTAAGATGCTAGGGACTAACACGCCATATTTTCATATACTTAGACTAAAATGAGGGATGCCATATACGTTTTTTTTTTTTTTTTTTTTTTTAAGAAGGGGATGTCATATACGTTAAGAGACTAATTATTTGTATATACTTTAGGGACTAAATTGAAGAGAGTGATACTTAAAAGGCTAATGGTGTACTATTTTAGGTTCTTAAGCTACTTCACCAACAATGTAAAGTTTTATTGTGTCTTTTCATTTGAATTTGAACTTCTGCATCTTTATGCCAGTCTTGTTATTCTTCGACATACATGTACACACATATTGATGGTTGTTTTTTCCTTTTTTTTTTTTTGCTTTGATTCAAAAACTTAATTCACATATATTGGTGGTTGTGAATATGATGAAATGATGATTAAGTGTACTGGTGTATTATTTAACAGCTCACTCTGATATGAACGTTGTCACAATACTTGTTGGGAACAAGTCAGATCTTAAGGATGCGAGGGAGGTACCTACGACGGAAGGCAAGGCTTTAGCTGAGGCACAAGGTTTGTTCTTTATGGAGACATCAGCACTTGATTCGTCAAATGTAGTTGCTGCTTTTCAAACAGTTGTAAAAGAAATCTACAACATATTAAGCCGGAAGGTTATGATGTCTCAAGAGCTCAAGAAAGACGATGCTTCCTGGATTGAAAATGGAAAGACTGTTGTTCTACAACAAGAAGGGGATCGATCAGCAGAAGGGGAGACAAAAAAGGGTTGTTGTTCGAAATAG

Protein sequence

>MS.gene07529.t1

MAFNNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVPTTEGKALAEAQGLFFMETSALDSSNVVAAFQTVVKEIYNILSRKVMMSQELKKDDASWIENGKTVVLQQEGDRSAEGETKKGCCSK