AlfalfaGEDB | MS.gene06446

M. sativa cultivar XinJiangDaYe / MS.gene06446

KEGG: K10355
GO: -
PFAM: PF00022.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06446.t1	XP_012571874.1	100	377	0	0	1	377	1	377	4.80E-217	763.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06446.t1	P53492	98.4	377	6	0	1	377	1	377	4.1e-217	755.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06446.t1	G7JAX4	100.0	377	0	0	1	377	1	377	3.4e-217	763.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049321	MS.gene06446	0.981221	4.58E-152	-1.69E-46
MS.gene049343	MS.gene06446	-0.8021	6.58E-49	-1.69E-46
MS.gene057071	MS.gene06446	-0.804496	2.10E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene055991	MS.gene06446	PPI
MS.gene06446	MS.gene037838	PPI
MS.gene06446	MS.gene86783	PPI
MS.gene06446	MS.gene063165	PPI
MS.gene31154	MS.gene06446	PPI
MS.gene044849	MS.gene06446	PPI
MS.gene06446	MS.gene000108	PPI
MS.gene06446	MS.gene86676	PPI
MS.gene055437	MS.gene06446	PPI
MS.gene06446	MS.gene053110	PPI
MS.gene052120	MS.gene06446	PPI
MS.gene37081	MS.gene06446	PPI
MS.gene033590	MS.gene06446	PPI
MS.gene30959	MS.gene06446	PPI
MS.gene06446	MS.gene37274	PPI
MS.gene06446	MS.gene04628	PPI
MS.gene06446	MS.gene014281	PPI
MS.gene001874	MS.gene06446	PPI
MS.gene45493	MS.gene06446	PPI
MS.gene46685	MS.gene06446	PPI
MS.gene82765	MS.gene06446	PPI
MS.gene55068	MS.gene06446	PPI
MS.gene92731	MS.gene06446	PPI
MS.gene032698	MS.gene06446	PPI
MS.gene68222	MS.gene06446	PPI
MS.gene034501	MS.gene06446	PPI
MS.gene065414	MS.gene06446	PPI
MS.gene06446	MS.gene024155	PPI
MS.gene45491	MS.gene06446	PPI
MS.gene06446	MS.gene52664	PPI
MS.gene022650	MS.gene06446	PPI
MS.gene017992	MS.gene06446	PPI
MS.gene064894	MS.gene06446	PPI
MS.gene77958	MS.gene06446	PPI
MS.gene79962	MS.gene06446	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06446.t1	MTR_3g095530	100.000	377	0	0	1	377	1	377	0.0	783
MS.gene06446.t1	MTR_0015s0130	95.756	377	16	0	1	377	1	377	0.0	763
MS.gene06446.t1	MTR_7g026230	96.021	377	15	0	1	377	1	377	0.0	762
MS.gene06446.t1	MTR_7g093260	95.756	377	16	0	1	377	1	377	0.0	761
MS.gene06446.t1	MTR_6g004000	95.491	377	17	0	1	377	1	377	0.0	761
MS.gene06446.t1	MTR_2g096840	94.960	377	19	0	1	377	1	377	0.0	761
MS.gene06446.t1	MTR_2g008050	94.695	377	20	0	1	377	1	377	0.0	754
MS.gene06446.t1	MTR_7g027185	43.799	379	199	3	10	374	7	385	3.83e-121	355
MS.gene06446.t1	MTR_7g027185	45.070	355	182	2	10	351	7	361	1.94e-118	348
MS.gene06446.t1	MTR_7g027185	48.208	307	157	1	10	314	7	313	9.99e-111	326
MS.gene06446.t1	MTR_5g066400	37.360	447	206	12	1	376	1	444	7.43e-91	280
MS.gene06446.t1	MTR_8g464900	36.659	431	200	11	1	361	1	428	3.17e-84	263
MS.gene06446.t1	MTR_5g066400	34.753	446	191	12	1	376	1	416	4.03e-78	246
MS.gene06446.t1	MTR_8g089630	34.474	409	222	8	10	372	10	418	4.24e-72	231
MS.gene06446.t1	MTR_3g030550	37.105	380	213	9	7	377	1	363	2.05e-68	220
MS.gene06446.t1	MTR_5g066400	34.000	400	193	11	1	332	1	397	1.22e-66	217
MS.gene06446.t1	MTR_2g445210	28.132	423	238	7	8	366	6	426	1.50e-55	189
MS.gene06446.t1	MTR_8g007440	33.206	262	152	5	77	319	9	266	4.35e-44	154
MS.gene06446.t1	MTR_2g445210	26.882	372	206	7	8	315	6	375	6.14e-42	151
MS.gene06446.t1	MTR_3g010170	30.976	297	181	9	91	371	179	467	1.26e-39	147
MS.gene06446.t1	MTR_8g070520	32.082	293	172	10	91	366	187	469	3.90e-37	140
MS.gene06446.t1	MTR_8g070520	31.655	278	164	9	91	352	187	454	1.44e-33	130
MS.gene06446.t1	MTR_3g067945	30.556	252	156	7	9	245	21	268	8.01e-24	103
MS.gene06446.t1	MTR_3g067945	34.426	122	77	2	250	368	586	707	6.27e-16	79.7
MS.gene06446.t1	MTR_8g008540	72.973	37	10	0	340	376	41	77	2.58e-13	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06446.t1	AT5G09810	98.408	377	6	0	1	377	1	377	0.0	774
MS.gene06446.t1	AT3G53750	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene06446.t1	AT3G53750	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene06446.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene06446.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene06446.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene06446.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene06446.t1	AT3G12110	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene06446.t1	AT3G46520	94.430	377	21	0	1	377	1	377	0.0	749
MS.gene06446.t1	AT3G46520	94.430	377	21	0	1	377	1	377	0.0	749
MS.gene06446.t1	AT1G49240	93.369	377	25	0	1	377	1	377	0.0	749
MS.gene06446.t1	AT5G59370	94.164	377	22	0	1	377	1	377	0.0	748
MS.gene06446.t1	AT5G59370	94.164	377	22	0	1	377	1	377	0.0	748
MS.gene06446.t1	AT3G18780	93.103	377	26	0	1	377	1	377	0.0	747
MS.gene06446.t1	AT3G18780	93.103	377	26	0	1	377	1	377	0.0	747
MS.gene06446.t1	AT3G18780	92.521	361	27	0	1	361	1	361	0.0	707
MS.gene06446.t1	AT2G42100	84.511	368	57	0	10	377	11	378	0.0	674
MS.gene06446.t1	AT2G42090	71.622	370	100	1	7	376	1	365	0.0	569
MS.gene06446.t1	AT2G42170	78.313	332	69	1	46	377	1	329	0.0	560
MS.gene06446.t1	AT2G42170	78.313	332	69	1	46	377	1	329	0.0	560
MS.gene06446.t1	AT2G42170	78.526	312	64	1	46	357	1	309	0.0	523
MS.gene06446.t1	AT2G42170	78.526	312	64	1	46	357	1	309	0.0	523
MS.gene06446.t1	AT2G42170	78.319	226	46	1	152	377	9	231	2.42e-131	375
MS.gene06446.t1	AT3G27000	44.591	379	196	4	10	374	7	385	1.12e-122	360
MS.gene06446.t1	AT1G18450	38.202	445	201	11	1	376	1	440	8.62e-95	290
MS.gene06446.t1	AT1G13180	34.867	413	215	10	10	372	9	417	1.55e-72	233
MS.gene06446.t1	AT3G60830	37.467	379	213	9	7	377	1	363	1.66e-66	215
MS.gene06446.t1	AT3G33520	30.404	421	235	7	10	377	5	420	3.61e-59	197
MS.gene06446.t1	AT5G56180	30.928	291	175	9	91	364	50	331	2.01e-35	132
MS.gene06446.t1	AT5G56180	30.928	291	175	9	91	364	182	463	1.17e-34	133
MS.gene06446.t1	AT3G12380	29.572	257	158	6	9	245	21	274	3.50e-26	110
MS.gene06446.t1	AT3G12380	34.426	122	77	1	250	368	595	716	6.04e-16	80.1
MS.gene06446.t1	AT3G12380	29.412	255	155	6	9	245	21	268	1.77e-25	108
MS.gene06446.t1	AT3G12380	34.426	122	77	1	250	368	589	710	5.80e-16	80.1
MS.gene06446.t1	AT1G73910	35.862	145	74	3	1	129	1	142	2.69e-23	95.1
MS.gene06446.t1	AT1G73910	35.862	145	74	3	1	129	1	142	2.69e-23	95.1
MS.gene06446.t1	AT5G56180	31.683	202	115	7	91	281	182	371	4.62e-19	88.2
MS.gene06446.t1	AT1G73910	29.268	123	71	2	1	107	1	123	2.86e-12	65.1

Find 119 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAAAGTCTCAAACATGATT+TGG	0.224034	3.2:+79820293	None:intergenic
AGAAGCACTGGGTGCTCTTC+AGG	0.266274	3.2:+79820361	None:intergenic
GAGAGTAAGAATACCTCTTT+TGG	0.276320	3.2:+79820474	None:intergenic
GATGGTTGGAAAAGGACTTC+TGG	0.306272	3.2:+79819799	None:intergenic
AGCACGGTATTGTCAGTAAC+TGG	0.314467	3.2:-79820438	MS.gene06446:CDS
ACAGGTATTGTGTTGGATTC+CGG	0.317257	3.2:-79820126	MS.gene06446:intron
CTGACAATACCGTGCTCAAT+GGG	0.336851	3.2:+79820445	None:intergenic
ATCCTTCGTTTGGATCTTGC+TGG	0.344358	3.2:-79820048	MS.gene06446:CDS
TCCTAGCAGCATGAAGATTA+AGG	0.346598	3.2:-79819608	MS.gene06446:CDS
GGTGGTTCAACTATGTTTCC+TGG	0.355516	3.2:-79819670	MS.gene06446:CDS
TGTGTGCAGGCTGGATTTGC+TGG	0.360977	3.2:-79820607	MS.gene06446:intron
GAAAGTCTCAAACATGATTT+GGG	0.367813	3.2:+79820294	None:intergenic
GCTTCCATTCCGATCATTGA+TGG	0.371444	3.2:+79819781	None:intergenic
CTATTGGCCTTTGGGTTAAG+TGG	0.372320	3.2:+79820328	None:intergenic
TACTGGTGTCATGGTTGGTA+TGG	0.381549	3.2:-79820533	MS.gene06446:CDS
CCCACATGCTATCCTTCGTT+TGG	0.383523	3.2:-79820058	MS.gene06446:CDS
CGAGGTCGGCCAACAATACT+TGG	0.411313	3.2:+79820559	None:intergenic
TACGGCAACATTGTTCTTAG+TGG	0.417976	3.2:-79819691	MS.gene06446:CDS
ATGGTTGGAAAAGGACTTCT+GGG	0.420047	3.2:+79819800	None:intergenic
GGAAATTGTCCGTGACATAA+AGG	0.432407	3.2:-79819953	MS.gene06446:CDS
TATGCAAGTGGTCGTACAAC+TGG	0.432992	3.2:-79820226	MS.gene06446:intron
GTTGGCCGACCTCGTCATAC+TGG	0.436618	3.2:-79820550	MS.gene06446:CDS
CTTGTTTGTGACAATGGAAC+TGG	0.436831	3.2:-79820723	MS.gene06446:CDS
TCTTCATGCTGCTAGGAGCC+AGG	0.437433	3.2:+79819614	None:intergenic
CAACCCCTTGTTTGTGACAA+TGG	0.439095	3.2:-79820729	MS.gene06446:CDS
TTCTCTCAGTACTTTCCAGC+AGG	0.448158	3.2:-79819530	MS.gene06446:intron
GGAGCCTCAGTTAGAAGCAC+TGG	0.448567	3.2:+79820349	None:intergenic
TTGCTGGTGATGATGCTCCT+AGG	0.448710	3.2:-79820591	MS.gene06446:CDS
GCTGTGTTTCCAAGTATTGT+TGG	0.449099	3.2:-79820568	MS.gene06446:CDS
CGCCATGTATGTGGCCATCC+AGG	0.449438	3.2:-79820263	MS.gene06446:CDS
ACACTTCATGATAGAGTTGT+AGG	0.451087	3.2:+79819738	None:intergenic
CAGAGAGAAAGTACAGTGTC+TGG	0.452136	3.2:-79819573	MS.gene06446:CDS
GATGGACAAGTTATCACAAT+TGG	0.452391	3.2:-79819841	MS.gene06446:CDS
ATTGTGATAACTTGTCCATC+AGG	0.464957	3.2:+79819844	None:intergenic
CATTTCCTGTGGACAATGGA+TGG	0.469196	3.2:+79819373	None:intergenic
CGATCATTGATGGTTGGAAA+AGG	0.470418	3.2:+79819791	None:intergenic
GGGATGACATGGAGAAGATC+TGG	0.479434	3.2:-79820417	MS.gene06446:CDS
GAAGCTTGCATATGTTGCCT+TGG	0.482032	3.2:-79819929	MS.gene06446:CDS
AGAAAGTACAGTGTCTGGAT+TGG	0.483200	3.2:-79819568	MS.gene06446:CDS
AGCCTGGATGGCCACATACA+TGG	0.486225	3.2:+79820261	None:intergenic
CAGACACTGTACTTTCTCTC+TGG	0.490948	3.2:+79819574	None:intergenic
TCACACTGTGCCAATCTATG+AGG	0.492803	3.2:-79820091	MS.gene06446:CDS
ACTGACAATACCGTGCTCAA+TGG	0.496612	3.2:+79820444	None:intergenic
AAGTACAGTGTCTGGATTGG+AGG	0.497575	3.2:-79819565	MS.gene06446:CDS
ATGAAGATCCTCACTGAGAG+AGG	0.498979	3.2:-79820003	MS.gene06446:CDS
AAGGGTGAATATGACGAGTC+TGG	0.499493	3.2:-79819397	MS.gene06446:CDS
CAGCATGAAGATTAAGGTTG+TGG	0.500086	3.2:-79819602	MS.gene06446:CDS
GTTCACCACCTCAGCTGAGC+GGG	0.502382	3.2:-79819974	MS.gene06446:CDS
AGTGCATAACCCTCATAGAT+TGG	0.503175	3.2:+79820081	None:intergenic
CCATTCCGATCATTGATGGT+TGG	0.507915	3.2:+79819785	None:intergenic
CTCATACGGTCAGCAATACC+AGG	0.512812	3.2:+79819652	None:intergenic
TGCTGGTGATGATGCTCCTA+GGG	0.516201	3.2:-79820590	MS.gene06446:CDS
CATAGAGGGAGAGGACAGCC+TGG	0.522013	3.2:+79820245	None:intergenic
TTGGGCTTCGTCACCAACAT+AGG	0.522846	3.2:+79820498	None:intergenic
CAGTTCCATTGTCACAAACA+AGG	0.524372	3.2:+79820724	None:intergenic
GGCAACATTGTTCTTAGTGG+TGG	0.526272	3.2:-79819688	MS.gene06446:CDS
GAGCAAGGAGATCACTGCCC+TGG	0.526620	3.2:-79819632	MS.gene06446:CDS
CAGTGATCTCCTTGCTCATA+CGG	0.530919	3.2:+79819638	None:intergenic
CCAACCATCAATGATCGGAA+TGG	0.531135	3.2:-79819785	MS.gene06446:CDS
CATGGTTGGTATGGGTCAAA+AGG	0.532081	3.2:-79820524	MS.gene06446:CDS
ATTGTGTTGGATTCCGGCGA+TGG	0.537139	3.2:-79820120	MS.gene06446:CDS
ACTGGTGTCATGGTTGGTAT+GGG	0.539815	3.2:-79820532	MS.gene06446:CDS
ACCTCGTCATACTGGTGTCA+TGG	0.540702	3.2:-79820542	MS.gene06446:CDS
GACAATTTCCCGCTCAGCTG+AGG	0.541645	3.2:+79819966	None:intergenic
ACACTGTACTTTCTCTCTGG+TGG	0.545670	3.2:+79819577	None:intergenic
ATGATCGGAATGGAAGCTGC+TGG	0.546973	3.2:-79819775	MS.gene06446:CDS
TGTACGACCACTTGCATAGA+GGG	0.561313	3.2:+79820231	None:intergenic
AGTTCCATTGTCACAAACAA+GGG	0.561709	3.2:+79820725	None:intergenic
TGTCAGTAACTGGGATGACA+TGG	0.562581	3.2:-79820428	MS.gene06446:CDS
GAGGGAGAGGACAGCCTGGA+TGG	0.565012	3.2:+79820249	None:intergenic
TTGTACGACCACTTGCATAG+AGG	0.570654	3.2:+79820230	None:intergenic
AGACTCGTCATATTCACCCT+TGG	0.570952	3.2:+79819399	None:intergenic
AATTTCCCGCTCAGCTGAGG+TGG	0.571031	3.2:+79819969	None:intergenic
AAGTTCTTGTTCATAATCCA+AGG	0.571032	3.2:+79819912	None:intergenic
ATACTTGGAAACACAGCCCT+AGG	0.573620	3.2:+79820574	None:intergenic
CGTCATACTGGTGTCATGGT+TGG	0.573856	3.2:-79820538	MS.gene06446:CDS
CTTCATGCTGCTAGGAGCCA+GGG	0.577950	3.2:+79819615	None:intergenic
GAAGCATTTCCTGTGGACAA+TGG	0.580709	3.2:+79819369	None:intergenic
CAAGCTTCTCCTTTATGTCA+CGG	0.584330	3.2:+79819944	None:intergenic
GACCACTTGCATAGAGGGAG+AGG	0.585397	3.2:+79820236	None:intergenic
CTGGCCCATCCATTGTCCAC+AGG	0.585546	3.2:-79819378	MS.gene06446:CDS
GCAAAAGATGGCAGATGCTG+AGG	0.585999	3.2:-79820757	None:intergenic
CAATGTGCCCGCCATGTATG+TGG	0.588880	3.2:-79820272	MS.gene06446:CDS
TGGATGGCCACATACATGGC+GGG	0.589918	3.2:+79820265	None:intergenic
GACGAAGCCCAATCCAAAAG+AGG	0.590961	3.2:-79820487	MS.gene06446:CDS
GATATCAGAAAAGATCTGTA+CGG	0.594697	3.2:-79819709	MS.gene06446:CDS
GTCCTCTCCCTCTATGCAAG+TGG	0.594901	3.2:-79820238	MS.gene06446:CDS
ATTTCCTGTGGACAATGGAT+GGG	0.598758	3.2:+79819374	None:intergenic
ACCTTAATCTTCATGCTGCT+AGG	0.600175	3.2:+79819607	None:intergenic
TTTGCAGATGTGGATATCCA+AGG	0.604467	3.2:-79819416	MS.gene06446:intron
CTCAAGTACCCCATTGAGCA+CGG	0.608960	3.2:-79820454	MS.gene06446:CDS
CACACTGTGCCAATCTATGA+GGG	0.612158	3.2:-79820090	MS.gene06446:CDS
TATTGCTGACCGTATGAGCA+AGG	0.626661	3.2:-79819647	MS.gene06446:CDS
GAGCCTCAGTTAGAAGCACT+GGG	0.630481	3.2:+79820350	None:intergenic
AGTGTGACTCACACCATCGC+CGG	0.631174	3.2:+79820107	None:intergenic
GCACGGTATTGTCAGTAACT+GGG	0.632162	3.2:-79820437	MS.gene06446:CDS
GGTCAAAAGGATGCCTATGT+TGG	0.633441	3.2:-79820511	MS.gene06446:CDS
TCCAAACGAAGGATAGCATG+TGG	0.637382	3.2:+79820057	None:intergenic
TTGTGACAATGGAACTGGAA+TGG	0.639550	3.2:-79820718	MS.gene06446:CDS
CTCTATCATGAAGTGTGATG+TGG	0.640270	3.2:-79819731	MS.gene06446:CDS
GGACTTAGAAGCATTTCCTG+TGG	0.642629	3.2:+79819362	None:intergenic
GGAAAAGGACTTCTGGGCAA+CGG	0.648496	3.2:+79819806	None:intergenic
GGAAAGTACTGAGAGAAGCA+AGG	0.656348	3.2:+79819536	None:intergenic
GTTCCATTGTCACAAACAAG+GGG	0.658903	3.2:+79820726	None:intergenic
CAATGGAACTGGAATGGTGA+AGG	0.661223	3.2:-79820712	MS.gene06446:intron
TGAAGATCCTCACTGAGAGA+GGG	0.661425	3.2:-79820002	MS.gene06446:CDS
TTATCACAATTGGAGCTGAG+AGG	0.664936	3.2:-79819831	MS.gene06446:CDS
TGAGGCTCCACTTAACCCAA+AGG	0.668440	3.2:-79820335	MS.gene06446:CDS
TGACACCAGTATGACGAGGT+CGG	0.672228	3.2:+79820545	None:intergenic
GCACCCAGTGCTTCTAACTG+AGG	0.673440	3.2:-79820353	MS.gene06446:CDS
CCAAACGAAGGATAGCATGT+GGG	0.675471	3.2:+79820058	None:intergenic
TTGCAGATGTGGATATCCAA+GGG	0.681771	3.2:-79819415	MS.gene06446:intron
CTGGATGGCCACATACATGG+CGG	0.687535	3.2:+79820264	None:intergenic
CTTCATGATAGAGTTGTAGG+TGG	0.694993	3.2:+79819741	None:intergenic
GACCAGCAAGATCCAAACGA+AGG	0.704830	3.2:+79820046	None:intergenic
ACATGTACCCTCTCTCAGTG+AGG	0.709732	3.2:+79819995	None:intergenic
TGACAATACCGTGCTCAATG+GGG	0.720666	3.2:+79820446	None:intergenic
TGTTCACCACCTCAGCTGAG+CGG	0.722178	3.2:-79819975	MS.gene06446:CDS
ACCATGACACCAGTATGACG+AGG	0.732971	3.2:+79820541	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTCAAAAATGAAAAGATTGA+GGG	+	chr3.2:79819970-79819989	None:intergenic	20.0%
!!	TTTCAAAAATGAAAAGATTG+AGG	+	chr3.2:79819971-79819990	None:intergenic	20.0%
!!!	AATCTTTTCATTTTTGAAAC+AGG	-	chr3.2:79819972-79819991	MS.gene06446:CDS	20.0%
	AAAAACTATGAACTTCCTGA+TGG	-	chr3.2:79820257-79820276	MS.gene06446:CDS	30.0%
	AAGTTCTTGTTCATAATCCA+AGG	+	chr3.2:79820207-79820226	None:intergenic	30.0%
	GAAAGTCTCAAACATGATTT+GGG	+	chr3.2:79819825-79819844	None:intergenic	30.0%
	GACATCACATACATTATACA+TGG	+	chr3.2:79820643-79820662	None:intergenic	30.0%
	GATATCAGAAAAGATCTGTA+CGG	-	chr3.2:79820407-79820426	MS.gene06446:CDS	30.0%
	TGAAAGTCTCAAACATGATT+TGG	+	chr3.2:79819826-79819845	None:intergenic	30.0%
!	AAGAATACCTCTTTTGGATT+GGG	+	chr3.2:79819639-79819658	None:intergenic	30.0%
!	TAAGAATACCTCTTTTGGAT+TGG	+	chr3.2:79819640-79819659	None:intergenic	30.0%
!!!	TTGTTTTTGTTTTGCAGATG+TGG	-	chr3.2:79820690-79820709	MS.gene06446:intron	30.0%
!!!	TTTTGAAACAGGTATTGTGT+TGG	-	chr3.2:79819983-79820002	MS.gene06446:CDS	30.0%
	AAGATTGAGGGACAGAATAA+TGG	+	chr3.2:79819958-79819977	None:intergenic	35.0%
	ACACTTCATGATAGAGTTGT+AGG	+	chr3.2:79820381-79820400	None:intergenic	35.0%
	AGTTCCATTGTCACAAACAA+GGG	+	chr3.2:79819394-79819413	None:intergenic	35.0%
	GATGGACAAGTTATCACAAT+TGG	-	chr3.2:79820275-79820294	MS.gene06446:CDS	35.0%
	GTGATAAAATAATCACCTGC+TGG	+	chr3.2:79820604-79820623	None:intergenic	35.0%
	TTCATCTACAATTTGTGTGC+AGG	-	chr3.2:79819496-79819515	MS.gene06446:intron	35.0%
!	ATTGTGATAACTTGTCCATC+AGG	+	chr3.2:79820275-79820294	None:intergenic	35.0%
!	CTTTTCCAACCATCAATGAT+CGG	-	chr3.2:79820326-79820345	MS.gene06446:CDS	35.0%
!	GAGAGTAAGAATACCTCTTT+TGG	+	chr3.2:79819645-79819664	None:intergenic	35.0%
!	TTGGGTCATCTTTTCTCTAT+TGG	+	chr3.2:79819807-79819826	None:intergenic	35.0%
!!!	ATCTTTTCTCTATTGGCCTT+TGG	+	chr3.2:79819800-79819819	None:intergenic	35.0%
!!!	TCTTTTCTCTATTGGCCTTT+GGG	+	chr3.2:79819799-79819818	None:intergenic	35.0%
	ACCTTAATCTTCATGCTGCT+AGG	+	chr3.2:79820512-79820531	None:intergenic	40.0%
	AGTGCATAACCCTCATAGAT+TGG	+	chr3.2:79820038-79820057	None:intergenic	40.0%
	ATGGTTGGAAAAGGACTTCT+GGG	+	chr3.2:79820319-79820338	None:intergenic	40.0%
	ATTTCCTGTGGACAATGGAT+GGG	+	chr3.2:79820745-79820764	None:intergenic	40.0%
	CAAGCTTCTCCTTTATGTCA+CGG	+	chr3.2:79820175-79820194	None:intergenic	40.0%
	CAGCATGAAGATTAAGGTTG+TGG	-	chr3.2:79820514-79820533	MS.gene06446:CDS	40.0%
	CAGTTCCATTGTCACAAACA+AGG	+	chr3.2:79819395-79819414	None:intergenic	40.0%
	CTCTATCATGAAGTGTGATG+TGG	-	chr3.2:79820385-79820404	MS.gene06446:CDS	40.0%
	CTTCATGATAGAGTTGTAGG+TGG	+	chr3.2:79820378-79820397	None:intergenic	40.0%
	CTTGTTTGTGACAATGGAAC+TGG	-	chr3.2:79819393-79819412	MS.gene06446:CDS	40.0%
	GGAAATTGTCCGTGACATAA+AGG	-	chr3.2:79820163-79820182	MS.gene06446:intron	40.0%
	GTTCCATTGTCACAAACAAG+GGG	+	chr3.2:79819393-79819412	None:intergenic	40.0%
	TACGGCAACATTGTTCTTAG+TGG	-	chr3.2:79820425-79820444	MS.gene06446:CDS	40.0%
	TCCTAGCAGCATGAAGATTA+AGG	-	chr3.2:79820508-79820527	MS.gene06446:CDS	40.0%
	TTATCACAATTGGAGCTGAG+AGG	-	chr3.2:79820285-79820304	MS.gene06446:CDS	40.0%
	TTGCAGATGTGGATATCCAA+GGG	-	chr3.2:79820701-79820720	MS.gene06446:intron	40.0%
	TTGTGACAATGGAACTGGAA+TGG	-	chr3.2:79819398-79819417	MS.gene06446:CDS	40.0%
	TTTGCAGATGTGGATATCCA+AGG	-	chr3.2:79820700-79820719	MS.gene06446:intron	40.0%
!	ACAGGTATTGTGTTGGATTC+CGG	-	chr3.2:79819990-79820009	MS.gene06446:CDS	40.0%
!	AGAAAGTACAGTGTCTGGAT+TGG	-	chr3.2:79820548-79820567	MS.gene06446:CDS	40.0%
!	CGATCATTGATGGTTGGAAA+AGG	+	chr3.2:79820328-79820347	None:intergenic	40.0%
!	GCTGTGTTTCCAAGTATTGT+TGG	-	chr3.2:79819548-79819567	MS.gene06446:CDS	40.0%
	AAGGGTGAATATGACGAGTC+TGG	-	chr3.2:79820719-79820738	MS.gene06446:CDS	45.0%
	ACACTGTACTTTCTCTCTGG+TGG	+	chr3.2:79820542-79820561	None:intergenic	45.0%
	ACTGACAATACCGTGCTCAA+TGG	+	chr3.2:79819675-79819694	None:intergenic	45.0%
	AGACTCGTCATATTCACCCT+TGG	+	chr3.2:79820720-79820739	None:intergenic	45.0%
	AGCACGGTATTGTCAGTAAC+TGG	-	chr3.2:79819678-79819697	MS.gene06446:CDS	45.0%
	ATACTTGGAAACACAGCCCT+AGG	+	chr3.2:79819545-79819564	None:intergenic	45.0%
	ATCCTTCGTTTGGATCTTGC+TGG	-	chr3.2:79820068-79820087	MS.gene06446:CDS	45.0%
	ATGAAGATCCTCACTGAGAG+AGG	-	chr3.2:79820113-79820132	MS.gene06446:CDS	45.0%
	CAATGGAACTGGAATGGTGA+AGG	-	chr3.2:79819404-79819423	MS.gene06446:CDS	45.0%
	CACACTGTGCCAATCTATGA+GGG	-	chr3.2:79820026-79820045	MS.gene06446:CDS	45.0%
	CAGACACTGTACTTTCTCTC+TGG	+	chr3.2:79820545-79820564	None:intergenic	45.0%
	CAGTGATCTCCTTGCTCATA+CGG	+	chr3.2:79820481-79820500	None:intergenic	45.0%
	CATTTCCTGTGGACAATGGA+TGG	+	chr3.2:79820746-79820765	None:intergenic	45.0%
	CCAAACGAAGGATAGCATGT+GGG	+	chr3.2:79820061-79820080	None:intergenic	45.0%
	CCAACCATCAATGATCGGAA+TGG	-	chr3.2:79820331-79820350	MS.gene06446:CDS	45.0%
	CTGACAATACCGTGCTCAAT+GGG	+	chr3.2:79819674-79819693	None:intergenic	45.0%
	GAAGCTTGCATATGTTGCCT+TGG	-	chr3.2:79820187-79820206	MS.gene06446:intron	45.0%
	GATGGTTGGAAAAGGACTTC+TGG	+	chr3.2:79820320-79820339	None:intergenic	45.0%
	GCACGGTATTGTCAGTAACT+GGG	-	chr3.2:79819679-79819698	MS.gene06446:CDS	45.0%
	GCTTCCATTCCGATCATTGA+TGG	+	chr3.2:79820338-79820357	None:intergenic	45.0%
	GGCAACATTGTTCTTAGTGG+TGG	-	chr3.2:79820428-79820447	MS.gene06446:CDS	45.0%
	GGTCAAAAGGATGCCTATGT+TGG	-	chr3.2:79819605-79819624	MS.gene06446:CDS	45.0%
	GGTGGTTCAACTATGTTTCC+TGG	-	chr3.2:79820446-79820465	MS.gene06446:CDS	45.0%
	TATGCAAGTGGTCGTACAAC+TGG	-	chr3.2:79819890-79819909	MS.gene06446:CDS	45.0%
	TATTGCTGACCGTATGAGCA+AGG	-	chr3.2:79820469-79820488	MS.gene06446:CDS	45.0%
	TCACACTGTGCCAATCTATG+AGG	-	chr3.2:79820025-79820044	MS.gene06446:CDS	45.0%
	TCCAAACGAAGGATAGCATG+TGG	+	chr3.2:79820062-79820081	None:intergenic	45.0%
	TCTACAATTTGTGTGCAGGC+TGG	-	chr3.2:79819500-79819519	MS.gene06446:intron	45.0%
	TGAAGATCCTCACTGAGAGA+GGG	-	chr3.2:79820114-79820133	MS.gene06446:CDS	45.0%
	TGACAATACCGTGCTCAATG+GGG	+	chr3.2:79819673-79819692	None:intergenic	45.0%
	TGTACGACCACTTGCATAGA+GGG	+	chr3.2:79819888-79819907	None:intergenic	45.0%
	TGTCAGTAACTGGGATGACA+TGG	-	chr3.2:79819688-79819707	MS.gene06446:CDS	45.0%
	TTCTCTCAGTACTTTCCAGC+AGG	-	chr3.2:79820586-79820605	MS.gene06446:CDS	45.0%
	TTGTACGACCACTTGCATAG+AGG	+	chr3.2:79819889-79819908	None:intergenic	45.0%
!	AAGTACAGTGTCTGGATTGG+AGG	-	chr3.2:79820551-79820570	MS.gene06446:CDS	45.0%
!	CAACCCCTTGTTTGTGACAA+TGG	-	chr3.2:79819387-79819406	MS.gene06446:CDS	45.0%
!	CAGAGAGAAAGTACAGTGTC+TGG	-	chr3.2:79820543-79820562	MS.gene06446:CDS	45.0%
!	CATGGTTGGTATGGGTCAAA+AGG	-	chr3.2:79819592-79819611	MS.gene06446:CDS	45.0%
!	CCATTCCGATCATTGATGGT+TGG	+	chr3.2:79820334-79820353	None:intergenic	45.0%
!	GAAGCATTTCCTGTGGACAA+TGG	+	chr3.2:79820750-79820769	None:intergenic	45.0%
!!	ACTGGTGTCATGGTTGGTAT+GGG	-	chr3.2:79819584-79819603	MS.gene06446:CDS	45.0%
!!	CTATTGGCCTTTGGGTTAAG+TGG	+	chr3.2:79819791-79819810	None:intergenic	45.0%
!!	GGAAAGTACTGAGAGAAGCA+AGG	+	chr3.2:79820583-79820602	None:intergenic	45.0%
!!	TACTGGTGTCATGGTTGGTA+TGG	-	chr3.2:79819583-79819602	MS.gene06446:CDS	45.0%
	ACATGTACCCTCTCTCAGTG+AGG	+	chr3.2:79820124-79820143	None:intergenic	50.0%
	ACCATGACACCAGTATGACG+AGG	+	chr3.2:79819578-79819597	None:intergenic	50.0%
	ATGATCGGAATGGAAGCTGC+TGG	-	chr3.2:79820341-79820360	MS.gene06446:CDS	50.0%
	ATTGTGTTGGATTCCGGCGA+TGG	-	chr3.2:79819996-79820015	MS.gene06446:CDS	50.0%
	CCCACATGCTATCCTTCGTT+TGG	-	chr3.2:79820058-79820077	MS.gene06446:CDS	50.0%
	CTCAAGTACCCCATTGAGCA+CGG	-	chr3.2:79819662-79819681	MS.gene06446:CDS	50.0%
	CTCATACGGTCAGCAATACC+AGG	+	chr3.2:79820467-79820486	None:intergenic	50.0%
	GACCAGCAAGATCCAAACGA+AGG	+	chr3.2:79820073-79820092	None:intergenic	50.0%
	GACGAAGCCCAATCCAAAAG+AGG	-	chr3.2:79819629-79819648	MS.gene06446:CDS	50.0%
	GGAAAAGGACTTCTGGGCAA+CGG	+	chr3.2:79820313-79820332	None:intergenic	50.0%
	GGGATGACATGGAGAAGATC+TGG	-	chr3.2:79819699-79819718	MS.gene06446:CDS	50.0%
	TGACACCAGTATGACGAGGT+CGG	+	chr3.2:79819574-79819593	None:intergenic	50.0%
	TGAGGCTCCACTTAACCCAA+AGG	-	chr3.2:79819781-79819800	MS.gene06446:CDS	50.0%
	TTGGGCTTCGTCACCAACAT+AGG	+	chr3.2:79819621-79819640	None:intergenic	50.0%
!	ACCTCGTCATACTGGTGTCA+TGG	-	chr3.2:79819574-79819593	MS.gene06446:CDS	50.0%
!	TGCTGGTGATGATGCTCCTA+GGG	-	chr3.2:79819526-79819545	MS.gene06446:intron	50.0%
!	TTGCTGGTGATGATGCTCCT+AGG	-	chr3.2:79819525-79819544	MS.gene06446:intron	50.0%
!!	CGTCATACTGGTGTCATGGT+TGG	-	chr3.2:79819578-79819597	MS.gene06446:CDS	50.0%
!!	GAGCCTCAGTTAGAAGCACT+GGG	+	chr3.2:79819769-79819788	None:intergenic	50.0%
	AATTTCCCGCTCAGCTGAGG+TGG	+	chr3.2:79820150-79820169	None:intergenic	55.0%
	AGCCTGGATGGCCACATACA+TGG	+	chr3.2:79819858-79819877	None:intergenic	55.0%
	AGTGTGACTCACACCATCGC+CGG	+	chr3.2:79820012-79820031	None:intergenic	55.0%
	CAATGTGCCCGCCATGTATG+TGG	-	chr3.2:79819844-79819863	MS.gene06446:CDS	55.0%
	CGAGGTCGGCCAACAATACT+TGG	+	chr3.2:79819560-79819579	None:intergenic	55.0%
	CTGGATGGCCACATACATGG+CGG	+	chr3.2:79819855-79819874	None:intergenic	55.0%
	CTTCATGCTGCTAGGAGCCA+GGG	+	chr3.2:79820504-79820523	None:intergenic	55.0%
	GACAATTTCCCGCTCAGCTG+AGG	+	chr3.2:79820153-79820172	None:intergenic	55.0%
	GACCACTTGCATAGAGGGAG+AGG	+	chr3.2:79819883-79819902	None:intergenic	55.0%
	GCACCCAGTGCTTCTAACTG+AGG	-	chr3.2:79819763-79819782	MS.gene06446:CDS	55.0%
	GTCCTCTCCCTCTATGCAAG+TGG	-	chr3.2:79819878-79819897	MS.gene06446:CDS	55.0%
	TCTTCATGCTGCTAGGAGCC+AGG	+	chr3.2:79820505-79820524	None:intergenic	55.0%
	TGGATGGCCACATACATGGC+GGG	+	chr3.2:79819854-79819873	None:intergenic	55.0%
	TGTGTGCAGGCTGGATTTGC+TGG	-	chr3.2:79819509-79819528	MS.gene06446:intron	55.0%
	TGTTCACCACCTCAGCTGAG+CGG	-	chr3.2:79820141-79820160	MS.gene06446:intron	55.0%
!	GGAGCCTCAGTTAGAAGCAC+TGG	+	chr3.2:79819770-79819789	None:intergenic	55.0%
!!	AGAAGCACTGGGTGCTCTTC+AGG	+	chr3.2:79819758-79819777	None:intergenic	55.0%
	CATAGAGGGAGAGGACAGCC+TGG	+	chr3.2:79819874-79819893	None:intergenic	60.0%
	CGCCATGTATGTGGCCATCC+AGG	-	chr3.2:79819853-79819872	MS.gene06446:CDS	60.0%
	CTGGCCCATCCATTGTCCAC+AGG	-	chr3.2:79820738-79820757	MS.gene06446:CDS	60.0%
	GAGCAAGGAGATCACTGCCC+TGG	-	chr3.2:79820484-79820503	MS.gene06446:CDS	60.0%
	GTTCACCACCTCAGCTGAGC+GGG	-	chr3.2:79820142-79820161	MS.gene06446:intron	60.0%
	GTTGGCCGACCTCGTCATAC+TGG	-	chr3.2:79819566-79819585	MS.gene06446:CDS	60.0%
	GAGGGAGAGGACAGCCTGGA+TGG	+	chr3.2:79819870-79819889	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	79819366	79820772	79819366	ID=MS.gene06446
chr3.2	mRNA	79819366	79820772	79819366	ID=MS.gene06446.t1;Parent=MS.gene06446
chr3.2	exon	79820713	79820772	79820713	ID=MS.gene06446.t1.exon1;Parent=MS.gene06446.t1
chr3.2	CDS	79820713	79820772	79820713	ID=cds.MS.gene06446.t1;Parent=MS.gene06446.t1
chr3.2	exon	79820227	79820620	79820227	ID=MS.gene06446.t1.exon2;Parent=MS.gene06446.t1
chr3.2	CDS	79820227	79820620	79820227	ID=cds.MS.gene06446.t1;Parent=MS.gene06446.t1
chr3.2	exon	79819531	79820144	79819531	ID=MS.gene06446.t1.exon3;Parent=MS.gene06446.t1
chr3.2	CDS	79819531	79820144	79819531	ID=cds.MS.gene06446.t1;Parent=MS.gene06446.t1
chr3.2	exon	79819366	79819431	79819366	ID=MS.gene06446.t1.exon4;Parent=MS.gene06446.t1
chr3.2	CDS	79819366	79819431	79819366	ID=cds.MS.gene06446.t1;Parent=MS.gene06446.t1

Gene Sequence

>MS.gene06446

ATGGCAGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGTTAGTAATTCAAAAAAAAAATCTGTCATTTTTGTGTGTTTGATTTTTGTTTTTGTTACTGAACGATGTGTTCATCTACAATTTGTGTGCAGGCTGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCAAGTATTGTTGGCCGACCTCGTCATACTGGTGTCATGGTTGGTATGGGTCAAAAGGATGCCTATGTTGGTGACGAAGCCCAATCCAAAAGAGGTATTCTTACTCTCAAGTACCCCATTGAGCACGGTATTGTCAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTAACTGAGGCTCCACTTAACCCAAAGGCCAATAGAGAAAAGATGACCCAAATCATGTTTGAGACTTTCAATGTGCCCGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTCTATGCAAGTGGTCGTACAACTGGTTCGTATTTTGACTATCTTTTTGAGAACATACTTTTGTCATTCCATTATTCTGTCCCTCAATCTTTTCATTTTTGAAACAGGTATTGTGTTGGATTCCGGCGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGTTATGCACTCCCACATGCTATCCTTCGTTTGGATCTTGCTGGTCGTGATCTAACTGATTCTTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCAGCTGAGCGGGAAATTGTCCGTGACATAAAGGAGAAGCTTGCATATGTTGCCTTGGATTATGAACAAGAACTTGAGACTGCAAAGAGCAGTTCTTCAATTGAGAAAAACTATGAACTTCCTGATGGACAAGTTATCACAATTGGAGCTGAGAGGTTCCGTTGCCCAGAAGTCCTTTTCCAACCATCAATGATCGGAATGGAAGCTGCTGGAATTCACGAGACCACCTACAACTCTATCATGAAGTGTGATGTGGATATCAGAAAAGATCTGTACGGCAACATTGTTCTTAGTGGTGGTTCAACTATGTTTCCTGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCCCTGGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCTTCTCTCAGTACTTTCCAGCAGGTGATTATTTTATCACAGATTAGCACATTTTGCCATGTATAATGTATGTGATGTCAATTTTATCTAATTCTACAATTTATTTTTGTTTTTGTTTTGCAGATGTGGATATCCAAGGGTGAATATGACGAGTCTGGCCCATCCATTGTCCACAGGAAATGCTTCTAA

Protein sequence

>MS.gene06446.t1

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF