Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066313.t1 | AFK40497.1 | 46 | 174 | 32 | 1 | 1 | 112 | 1 | 174 | 5.00E-26 | 127.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066313.t1 | Q9ZTX0 | 41.4 | 174 | 40 | 1 | 1 | 112 | 1 | 174 | 1.2e-23 | 110.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066313.t1 | G7ILG6 | 46.0 | 174 | 32 | 1 | 1 | 112 | 1 | 174 | 3.6e-26 | 127.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene066313 | 0.857169 | 1.96E-62 | -1.69E-46 |
| MS.gene049711 | MS.gene066313 | 0.811304 | 7.49E-51 | -1.69E-46 |
| MS.gene049977 | MS.gene066313 | 0.804615 | 1.98E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene066313 | 0.821211 | 4.56E-53 | -1.69E-46 |
| MS.gene050029 | MS.gene066313 | 0.812364 | 4.40E-51 | -1.69E-46 |
| MS.gene050273 | MS.gene066313 | 0.847019 | 1.51E-59 | -1.69E-46 |
| MS.gene051201 | MS.gene066313 | 0.811604 | 6.44E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene066313 | 0.849155 | 3.88E-60 | -1.69E-46 |
| MS.gene051332 | MS.gene066313 | 0.828572 | 8.34E-55 | -1.69E-46 |
| MS.gene051575 | MS.gene066313 | 0.800571 | 1.35E-48 | -1.69E-46 |
| MS.gene051594 | MS.gene066313 | 0.833952 | 3.97E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene066313 | 0.822486 | 2.31E-53 | -1.69E-46 |
| MS.gene05191 | MS.gene066313 | 0.814871 | 1.24E-51 | -1.69E-46 |
| MS.gene052037 | MS.gene066313 | 0.83518 | 1.95E-56 | -1.69E-46 |
| MS.gene052239 | MS.gene066313 | -0.816305 | 5.92E-52 | -1.69E-46 |
| MS.gene052447 | MS.gene066313 | 0.8283 | 9.71E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene066313 | 0.837606 | 4.71E-57 | -1.69E-46 |
| MS.gene052534 | MS.gene066313 | 0.820295 | 7.40E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene066313 | 0.813931 | 1.99E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene066313 | 0.816876 | 4.41E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene066313 | 0.821009 | 5.07E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene066313 | 0.833052 | 6.65E-56 | -1.69E-46 |
| MS.gene05422 | MS.gene066313 | 0.805707 | 1.17E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene066313 | 0.814554 | 1.45E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene066313 | 0.841114 | 5.78E-58 | -1.69E-46 |
| MS.gene054291 | MS.gene066313 | -0.813797 | 2.13E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene066313 | 0.800875 | 1.17E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene066313 | 0.83514 | 2.00E-56 | -1.69E-46 |
| MS.gene054991 | MS.gene066313 | 0.839744 | 1.32E-57 | -1.69E-46 |
| MS.gene055228 | MS.gene066313 | 0.837396 | 5.33E-57 | -1.69E-46 |
| MS.gene055229 | MS.gene066313 | 0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene05531 | MS.gene066313 | 0.809801 | 1.58E-50 | -1.69E-46 |
| MS.gene055724 | MS.gene066313 | 0.805227 | 1.48E-49 | -1.69E-46 |
| MS.gene055952 | MS.gene066313 | 0.808849 | 2.53E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene066313 | 0.804384 | 2.22E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene066313 | 0.843547 | 1.31E-58 | -1.69E-46 |
| MS.gene056272 | MS.gene066313 | 0.828947 | 6.77E-55 | -1.69E-46 |
| MS.gene056677 | MS.gene066313 | 0.802892 | 4.52E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene066313 | 0.805631 | 1.22E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene066313 | 0.835161 | 1.97E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene066313 | 0.803175 | 3.95E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene066313 | 0.806964 | 6.37E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene066313 | 0.814872 | 1.23E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene066313 | 0.801366 | 9.32E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene066313 | 0.80409 | 2.55E-49 | -1.69E-46 |
| MS.gene057921 | MS.gene066313 | 0.805449 | 1.33E-49 | -1.69E-46 |
| MS.gene058279 | MS.gene066313 | 0.810162 | 1.32E-50 | -1.69E-46 |
| MS.gene058294 | MS.gene066313 | 0.837228 | 5.88E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene066313 | 0.810052 | 1.40E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene066313 | 0.806321 | 8.71E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene066313 | 0.824672 | 7.11E-54 | -1.69E-46 |
| MS.gene059459 | MS.gene066313 | 0.803329 | 3.67E-49 | -1.69E-46 |
| MS.gene059460 | MS.gene066313 | 0.812914 | 3.34E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene066313 | 0.810585 | 1.07E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene066313 | 0.815735 | 7.94E-52 | -1.69E-46 |
| MS.gene060167 | MS.gene066313 | 0.810912 | 9.10E-51 | -1.69E-46 |
| MS.gene060257 | MS.gene066313 | 0.819363 | 1.21E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene066313 | 0.806834 | 6.79E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066313.t1 | MTR_2g012560 | 92.222 | 90 | 7 | 0 | 1 | 90 | 1 | 90 | 1.86e-54 | 172 |
| MS.gene066313.t1 | MTR_2g012560 | 92.222 | 90 | 7 | 0 | 1 | 90 | 1 | 90 | 3.26e-54 | 172 |
| MS.gene066313.t1 | MTR_4g090510 | 60.177 | 113 | 22 | 2 | 1 | 90 | 1 | 113 | 2.43e-37 | 129 |
| MS.gene066313.t1 | MTR_4g046110 | 47.321 | 112 | 30 | 4 | 4 | 91 | 3 | 109 | 1.57e-21 | 88.2 |
| MS.gene066313.t1 | MTR_2g090115 | 44.444 | 108 | 34 | 2 | 5 | 90 | 6 | 109 | 2.29e-20 | 84.7 |
| MS.gene066313.t1 | MTR_5g027790 | 39.583 | 96 | 43 | 4 | 1 | 90 | 1 | 87 | 9.94e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066313.t1 | AT1G61250 | 58.511 | 94 | 34 | 3 | 1 | 91 | 1 | 92 | 1.70e-30 | 110 |
| MS.gene066313.t1 | AT1G61250 | 59.140 | 93 | 33 | 3 | 1 | 90 | 1 | 91 | 4.68e-30 | 110 |
| MS.gene066313.t1 | AT1G11180 | 57.895 | 95 | 33 | 3 | 1 | 90 | 1 | 93 | 1.55e-29 | 108 |
| MS.gene066313.t1 | AT1G11180 | 57.895 | 95 | 33 | 3 | 1 | 90 | 1 | 93 | 1.82e-29 | 108 |
| MS.gene066313.t1 | AT1G11180 | 50.926 | 108 | 33 | 3 | 1 | 90 | 1 | 106 | 4.55e-27 | 102 |
| MS.gene066313.t1 | AT1G03550 | 53.763 | 93 | 38 | 2 | 3 | 94 | 2 | 90 | 1.60e-26 | 99.0 |
| MS.gene066313.t1 | AT1G03550 | 53.763 | 93 | 38 | 2 | 3 | 94 | 2 | 90 | 2.09e-26 | 99.0 |
| MS.gene066313.t1 | AT1G03550 | 53.763 | 93 | 38 | 2 | 3 | 94 | 2 | 90 | 2.59e-26 | 99.8 |
| MS.gene066313.t1 | AT1G03550 | 53.763 | 93 | 38 | 2 | 3 | 94 | 2 | 90 | 3.00e-26 | 99.8 |
| MS.gene066313.t1 | AT1G03550 | 53.763 | 93 | 38 | 2 | 3 | 94 | 2 | 90 | 5.19e-26 | 99.4 |
| MS.gene066313.t1 | AT2G20840 | 52.273 | 88 | 37 | 2 | 4 | 91 | 3 | 85 | 6.75e-24 | 94.0 |
| MS.gene066313.t1 | AT1G32050 | 40.206 | 97 | 47 | 3 | 1 | 94 | 1 | 89 | 6.06e-15 | 69.7 |
| MS.gene066313.t1 | AT2G20840 | 57.143 | 42 | 18 | 0 | 50 | 91 | 1 | 42 | 9.24e-11 | 58.2 |
| MS.gene066313.t1 | AT2G20840 | 57.143 | 42 | 18 | 0 | 50 | 91 | 1 | 42 | 9.24e-11 | 58.2 |
Find 35 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTTATTAGTTGATTCT+TGG | 0.275557 | 2.3:+30399414 | MS.gene066313:CDS |
| TACTTCATAGCAGGGGTTCC+TGG | 0.299994 | 2.3:+30399197 | MS.gene066313:CDS |
| TGAGTTAAACTTGGTATTAT+CGG | 0.319900 | 2.3:-30399375 | None:intergenic |
| TCAATTCAGCCTCCTTGGCT+TGG | 0.376025 | 2.3:-30398085 | None:intergenic |
| ATAATTGTAATCAGCACGTT+CGG | 0.386711 | 2.3:-30397872 | None:intergenic |
| AAAGAGGTACTTACAGCAAA+AGG | 0.387143 | 2.3:-30395772 | None:intergenic |
| CCCTGCTATGAAGTAGATAA+TGG | 0.406046 | 2.3:-30399189 | None:intergenic |
| TAATTGTAATCAGCACGTTC+GGG | 0.416991 | 2.3:-30397871 | None:intergenic |
| GCCATTATCTACTTCATAGC+AGG | 0.420275 | 2.3:+30399188 | MS.gene066313:CDS |
| GCAGCTCTTGAATTTGTGGC+AGG | 0.434655 | 2.3:-30397838 | None:intergenic |
| AGGTGCAGCTCTTGAATTTG+TGG | 0.439252 | 2.3:-30397842 | None:intergenic |
| TGAATTGAGAAAACGAGAAC+AGG | 0.474757 | 2.3:+30398100 | MS.gene066313:CDS |
| CCAAGAATCAACTAATAAGA+TGG | 0.498429 | 2.3:-30399414 | None:intergenic |
| TGTTTCTATCTTGTCATGGC+CGG | 0.505560 | 2.3:+30395709 | None:intergenic |
| TTTATATAGCCAAAGTGCTA+TGG | 0.506289 | 2.3:+30399346 | MS.gene066313:intron |
| TCAGCACGTTCGGGATTAAG+AGG | 0.510812 | 2.3:-30397862 | None:intergenic |
| GTTGACTTGTTCTTCGTCGA+AGG | 0.512552 | 2.3:-30395749 | None:intergenic |
| TTGACTTGTTCTTCGTCGAA+GGG | 0.513239 | 2.3:-30395748 | None:intergenic |
| AGCTCTTGAATTTGTGGCAG+GGG | 0.513721 | 2.3:-30397836 | None:intergenic |
| TGTTACATGTGAGTTAAACT+TGG | 0.518518 | 2.3:-30399384 | None:intergenic |
| CAGCTCTTGAATTTGTGGCA+GGG | 0.518748 | 2.3:-30397837 | None:intergenic |
| CGGAAAGTACCATAGCACTT+TGG | 0.528000 | 2.3:-30399355 | None:intergenic |
| CCATTATCTACTTCATAGCA+GGG | 0.528046 | 2.3:+30399189 | MS.gene066313:CDS |
| AAGAGGTACTTACAGCAAAA+GGG | 0.537767 | 2.3:-30395771 | None:intergenic |
| GAAGTGAGACGGAAAGAAGA+AGG | 0.547183 | 2.3:+30398393 | MS.gene066313:CDS |
| GGGATTACTGTTGTAACGAC+CGG | 0.572084 | 2.3:-30395728 | None:intergenic |
| TACCACATGACATATGCTCC+AGG | 0.581003 | 2.3:-30399215 | None:intergenic |
| GGAAAGAGAACTCCAAGCCA+AGG | 0.588085 | 2.3:+30398073 | MS.gene066313:CDS |
| TTAAAATGCAGGAAGTGAGA+CGG | 0.595319 | 2.3:+30398382 | MS.gene066313:intron |
| TTCCTGGAGCATATGTCATG+TGG | 0.615189 | 2.3:+30399213 | MS.gene066313:CDS |
| TATACCTCTTGATGCATCAA+CGG | 0.625805 | 2.3:+30397915 | MS.gene066313:CDS |
| CATTATCTACTTCATAGCAG+GGG | 0.639342 | 2.3:+30399190 | MS.gene066313:CDS |
| CATACCGTTGATGCATCAAG+AGG | 0.650424 | 2.3:-30397919 | None:intergenic |
| AAGAGAACTCCAAGCCAAGG+AGG | 0.704365 | 2.3:+30398076 | MS.gene066313:CDS |
| AAAGAAGAAGGCATTTCACG+AGG | 0.726855 | 2.3:+30398405 | MS.gene066313:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAAATCATAAAAA+TGG | + | chr2.3:30397026-30397045 | MS.gene066313:intron | 10.0% |
| !! | TTACAAATATGTATAAAAAA+AGG | - | chr2.3:30397976-30397995 | None:intergenic | 10.0% |
| !!! | AATTATTTCTTTTTGTATTT+TGG | - | chr2.3:30396102-30396121 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTTTGTATTTT+GGG | - | chr2.3:30396101-30396120 | None:intergenic | 10.0% |
| !!! | TATTTTTATGATATTTGATA+GGG | - | chr2.3:30396991-30397010 | None:intergenic | 10.0% |
| !!! | TTGATATTTTTATATTTGTT+TGG | - | chr2.3:30397418-30397437 | None:intergenic | 10.0% |
| !!! | TTTTAGTCATTTATATATTT+GGG | - | chr2.3:30399023-30399042 | None:intergenic | 10.0% |
| !! | ATATGTATAAAAAAAGGATT+TGG | - | chr2.3:30397970-30397989 | None:intergenic | 15.0% |
| !! | TACATATACATAATTTGATT+TGG | + | chr2.3:30396449-30396468 | MS.gene066313:intron | 15.0% |
| !! | TTAAAATGAAACATGAAAAT+TGG | + | chr2.3:30396014-30396033 | MS.gene066313:intron | 15.0% |
| !! | TTTAAAAAAATTCAGAATTC+TGG | + | chr2.3:30397805-30397824 | MS.gene066313:intron | 15.0% |
| !! | TTTAGTCATTTATATATTTG+GGG | - | chr2.3:30399022-30399041 | None:intergenic | 15.0% |
| !!! | CTATTTTTATGATATTTGAT+AGG | - | chr2.3:30396992-30397011 | None:intergenic | 15.0% |
| !!! | GCTTTAAATATTTATTTCAA+AGG | + | chr2.3:30397061-30397080 | MS.gene066313:intron | 15.0% |
| !!! | GTTTTAGTCATTTATATATT+TGG | - | chr2.3:30399024-30399043 | None:intergenic | 15.0% |
| !! | AAATCATAAAAATGGTCAAA+TGG | + | chr2.3:30397034-30397053 | MS.gene066313:intron | 20.0% |
| !! | AAATTAAGACAAAAAAATGC+AGG | - | chr2.3:30398361-30398380 | None:intergenic | 20.0% |
| !! | AATCATAAAAATGGTCAAAT+GGG | + | chr2.3:30397035-30397054 | MS.gene066313:intron | 20.0% |
| !! | ACATGATATATTTATTAACC+AGG | + | chr2.3:30397117-30397136 | MS.gene066313:intron | 20.0% |
| !! | ATATTTACTTATAGCATGTT+TGG | + | chr2.3:30398242-30398261 | MS.gene066313:intron | 20.0% |
| !! | ATGATAAATTCAAAGATGAA+AGG | - | chr2.3:30396283-30396302 | None:intergenic | 20.0% |
| !! | ATGCATTCAATTATAAATGT+CGG | + | chr2.3:30396910-30396929 | MS.gene066313:intron | 20.0% |
| !! | ATTCATGTTGAAATATTACA+TGG | + | chr2.3:30396768-30396787 | MS.gene066313:intron | 20.0% |
| !! | ATTGTTTATCAATTAAACAC+CGG | - | chr2.3:30398220-30398239 | None:intergenic | 20.0% |
| !! | TTTATTAGAACAGTATTTGA+TGG | - | chr2.3:30396372-30396391 | None:intergenic | 20.0% |
| !!! | ACAACAGAATTATTTCTTTT+TGG | + | chr2.3:30395881-30395900 | MS.gene066313:intron | 20.0% |
| !!! | AGAAATAATTCTGTTGTTTT+AGG | - | chr2.3:30395878-30395897 | None:intergenic | 20.0% |
| !!! | ATGTTAGAATTTGTTTTGTT+AGG | + | chr2.3:30397320-30397339 | MS.gene066313:intron | 20.0% |
| !!! | CTGATTACAATTATGTTTTT+GGG | + | chr2.3:30397881-30397900 | MS.gene066313:CDS | 20.0% |
| !!! | CTTGCAATTTTTAAATATGT+TGG | - | chr2.3:30399310-30399329 | None:intergenic | 20.0% |
| !!! | TCATTTTTTGAAATTGTCTT+TGG | + | chr2.3:30397505-30397524 | MS.gene066313:intron | 20.0% |
| !!! | TGTTACCAGATTTTTTTTTT+TGG | + | chr2.3:30398172-30398191 | MS.gene066313:intron | 20.0% |
| !!! | TGTTTTATTTCAAGAGTTTA+TGG | + | chr2.3:30398006-30398025 | MS.gene066313:intron | 20.0% |
| !!! | TTATGACATGTTTTAACAAT+AGG | + | chr2.3:30398037-30398056 | MS.gene066313:intron | 20.0% |
| !!! | TTATTTTCAAAATTGTGACA+TGG | + | chr2.3:30396228-30396247 | MS.gene066313:intron | 20.0% |
| !!! | TTTCATGTTTCATTTTAAGA+TGG | - | chr2.3:30396012-30396031 | None:intergenic | 20.0% |
| ! | AATAATAGATACTAAGCCTT+TGG | - | chr2.3:30396575-30396594 | None:intergenic | 25.0% |
| ! | ACACACCAAAAAAAAAAATC+TGG | - | chr2.3:30398180-30398199 | None:intergenic | 25.0% |
| ! | TGAGTTAAACTTGGTATTAT+CGG | - | chr2.3:30399378-30399397 | None:intergenic | 25.0% |
| ! | TTGATTGCATCTAGTTAAAT+TGG | + | chr2.3:30396529-30396548 | MS.gene066313:intron | 25.0% |
| ! | TTGTACAAAATGATATCATG+TGG | - | chr2.3:30396133-30396152 | None:intergenic | 25.0% |
| ! | TTGTTACAGGTGTAAAAATA+TGG | + | chr2.3:30399159-30399178 | MS.gene066313:intron | 25.0% |
| !! | AAAATCTTTTTGTATCAGAG+TGG | - | chr2.3:30397700-30397719 | None:intergenic | 25.0% |
| !! | AAATCTTTTTGTATCAGAGT+GGG | - | chr2.3:30397699-30397718 | None:intergenic | 25.0% |
| !! | ACAATCATTTTGTACAATCA+TGG | + | chr2.3:30396164-30396183 | MS.gene066313:intron | 25.0% |
| !! | ACTCTGATACAAAAAGATTT+TGG | + | chr2.3:30397699-30397718 | MS.gene066313:intron | 25.0% |
| !! | ATTTTCACTTATTATGAGAG+AGG | - | chr2.3:30397353-30397372 | None:intergenic | 25.0% |
| !! | GCTGATTACAATTATGTTTT+TGG | + | chr2.3:30397880-30397899 | MS.gene066313:CDS | 25.0% |
| !!! | AAAAGCTTTATTCAGAAAAG+AGG | - | chr2.3:30395791-30395810 | None:intergenic | 25.0% |
| !!! | AGTTTACTGATAAGTATTGA+AGG | + | chr2.3:30398970-30398989 | MS.gene066313:intron | 25.0% |
| !!! | ATTGCAGCATTGTTTTTAAT+TGG | + | chr2.3:30398923-30398942 | MS.gene066313:intron | 25.0% |
| !!! | ATTTTAAGATGGTTTCAACT+TGG | - | chr2.3:30396001-30396020 | None:intergenic | 25.0% |
| !!! | GTCTTAATTTGTTAAAATGC+AGG | + | chr2.3:30398371-30398390 | MS.gene066313:intron | 25.0% |
| !!! | TTGTTATTTAGGAGAAGAAT+TGG | + | chr2.3:30398703-30398722 | MS.gene066313:intron | 25.0% |
| !!! | TTTTTTTGTTTTCTGCAACT+GGG | + | chr2.3:30395818-30395837 | MS.gene066313:intron | 25.0% |
| !!! | TTTTTTTTGTTTTCTGCAAC+TGG | + | chr2.3:30395817-30395836 | MS.gene066313:intron | 25.0% |
| AAATGGTCTATCATTGAACA+TGG | - | chr2.3:30397593-30397612 | None:intergenic | 30.0% | |
| AACAAAGTGATTACATGTCA+AGG | - | chr2.3:30398671-30398690 | None:intergenic | 30.0% | |
| AACCATTATATCGTGCATTT+AGG | + | chr2.3:30399240-30399259 | MS.gene066313:intron | 30.0% | |
| ACAATAGGATGTGAAAAAGA+AGG | + | chr2.3:30398052-30398071 | MS.gene066313:intron | 30.0% | |
| ACATTCATGATGCAACATTA+TGG | + | chr2.3:30397649-30397668 | MS.gene066313:intron | 30.0% | |
| ATAATTGTAATCAGCACGTT+CGG | - | chr2.3:30397875-30397894 | None:intergenic | 30.0% | |
| ATCTGATTCAACAGATTCAA+TGG | + | chr2.3:30399117-30399136 | MS.gene066313:intron | 30.0% | |
| ATTTATTAACCAGGAAGAGT+AGG | + | chr2.3:30397126-30397145 | MS.gene066313:intron | 30.0% | |
| CCAAGAATCAACTAATAAGA+TGG | - | chr2.3:30399417-30399436 | None:intergenic | 30.0% | |
| GAAAACTTAATCACAGATAC+AGG | - | chr2.3:30398443-30398462 | None:intergenic | 30.0% | |
| GAATCTAACAAGTCCTTAAA+TGG | - | chr2.3:30397610-30397629 | None:intergenic | 30.0% | |
| GATTATGATGATATAGACCA+TGG | + | chr2.3:30396465-30396484 | MS.gene066313:intron | 30.0% | |
| GTAGATTGCAGAAAATTTGA+AGG | - | chr2.3:30396719-30396738 | None:intergenic | 30.0% | |
| GTATATGCATATAGATACCA+TGG | - | chr2.3:30396485-30396504 | None:intergenic | 30.0% | |
| GTTCAATGATAGACCATTTA+AGG | + | chr2.3:30397594-30397613 | MS.gene066313:intron | 30.0% | |
| TAAAACATGTGTGTTAGATG+CGG | - | chr2.3:30397789-30397808 | None:intergenic | 30.0% | |
| TACCTAAATGCACGATATAA+TGG | - | chr2.3:30399245-30399264 | None:intergenic | 30.0% | |
| TACTATGTTTATGTGTGTCT+GGG | + | chr2.3:30397544-30397563 | MS.gene066313:intron | 30.0% | |
| TGGAATAAAACTACTATGTG+AGG | + | chr2.3:30398510-30398529 | MS.gene066313:intron | 30.0% | |
| TGTTACATGTGAGTTAAACT+TGG | - | chr2.3:30399387-30399406 | None:intergenic | 30.0% | |
| TGTTTAGAAATTGTGTAGCT+AGG | - | chr2.3:30395977-30395996 | None:intergenic | 30.0% | |
| TTGAATATAATCACACGTGT+CGG | + | chr2.3:30396877-30396896 | MS.gene066313:intron | 30.0% | |
| TTTACACCTGTAACAAACAA+GGG | - | chr2.3:30399155-30399174 | None:intergenic | 30.0% | |
| ! | CCATCTTATTAGTTGATTCT+TGG | + | chr2.3:30399414-30399433 | MS.gene066313:CDS | 30.0% |
| ! | TCATTTATATATTTGGGGTG+TGG | - | chr2.3:30399017-30399036 | None:intergenic | 30.0% |
| ! | TGATGGATAATTGGGAAAAA+TGG | - | chr2.3:30398732-30398751 | None:intergenic | 30.0% |
| ! | TTTATATAGCCAAAGTGCTA+TGG | + | chr2.3:30399346-30399365 | MS.gene066313:intron | 30.0% |
| ! | TTTTACACCTGTAACAAACA+AGG | - | chr2.3:30399156-30399175 | None:intergenic | 30.0% |
| !! | CGATATCATGATGGATAATT+GGG | - | chr2.3:30398740-30398759 | None:intergenic | 30.0% |
| !! | TAATTTGTTATGCTTTAGCC+AGG | - | chr2.3:30397163-30397182 | None:intergenic | 30.0% |
| !!! | GAGAGACAATCTTTTTTTCA+TGG | - | chr2.3:30397246-30397265 | None:intergenic | 30.0% |
| !!! | GTTGCATTTTTTTCGTTGTT+AGG | + | chr2.3:30398798-30398817 | MS.gene066313:intron | 30.0% |
| AAAAATGCAGGTGAATTTCC+AGG | - | chr2.3:30398349-30398368 | None:intergenic | 35.0% | |
| AAAACATGTGTGTTAGATGC+GGG | - | chr2.3:30397788-30397807 | None:intergenic | 35.0% | |
| ACGAGAACAGGTATTTATAG+TGG | + | chr2.3:30398112-30398131 | MS.gene066313:intron | 35.0% | |
| ACTATCTTGCTTTCTTCTTG+TGG | + | chr2.3:30398835-30398854 | MS.gene066313:intron | 35.0% | |
| ACTATGTTTATGTGTGTCTG+GGG | + | chr2.3:30397545-30397564 | MS.gene066313:intron | 35.0% | |
| CAACATATTGCAGTCTTTGA+AGG | - | chr2.3:30398782-30398801 | None:intergenic | 35.0% | |
| CATTATCTACTTCATAGCAG+GGG | + | chr2.3:30399190-30399209 | MS.gene066313:CDS | 35.0% | |
| CCATTATCTACTTCATAGCA+GGG | + | chr2.3:30399189-30399208 | MS.gene066313:CDS | 35.0% | |
| CTATCTTGCTTTCTTCTTGT+GGG | + | chr2.3:30398836-30398855 | MS.gene066313:intron | 35.0% | |
| GATGGTATAAGTGAGTTACA+AGG | - | chr2.3:30396354-30396373 | None:intergenic | 35.0% | |
| GGAAAGAACATTATGACATG+TGG | - | chr2.3:30396333-30396352 | None:intergenic | 35.0% | |
| GGCAAGTATAGATAAGAAAC+AGG | - | chr2.3:30398328-30398347 | None:intergenic | 35.0% | |
| GTACTATGTTTATGTGTGTC+TGG | + | chr2.3:30397543-30397562 | MS.gene066313:intron | 35.0% | |
| GTATGTTAGTCGCTAAACTT+GGG | - | chr2.3:30397300-30397319 | None:intergenic | 35.0% | |
| GTCTATCATTGAACATGGTT+CGG | - | chr2.3:30397588-30397607 | None:intergenic | 35.0% | |
| GTTTCTTATCTATACTTGCC+TGG | + | chr2.3:30398328-30398347 | MS.gene066313:intron | 35.0% | |
| TAATTGTAATCAGCACGTTC+GGG | - | chr2.3:30397874-30397893 | None:intergenic | 35.0% | |
| TATACCTCTTGATGCATCAA+CGG | + | chr2.3:30397915-30397934 | MS.gene066313:CDS | 35.0% | |
| TATCAATTAAACACCGGTCT+AGG | - | chr2.3:30398214-30398233 | None:intergenic | 35.0% | |
| TATCTTGCTTTCTTCTTGTG+GGG | + | chr2.3:30398837-30398856 | MS.gene066313:intron | 35.0% | |
| TGAATTGAGAAAACGAGAAC+AGG | + | chr2.3:30398100-30398119 | MS.gene066313:CDS | 35.0% | |
| TGGATAATTGGGAAAAATGG+AGG | - | chr2.3:30398729-30398748 | None:intergenic | 35.0% | |
| TGTATGTTAGTCGCTAAACT+TGG | - | chr2.3:30397301-30397320 | None:intergenic | 35.0% | |
| TTAAAATGCAGGAAGTGAGA+CGG | + | chr2.3:30398382-30398401 | MS.gene066313:intron | 35.0% | |
| TTAAAGATGTGCATAGCCAA+AGG | + | chr2.3:30396556-30396575 | MS.gene066313:intron | 35.0% | |
| TTGCATCTAGTTAAATTGGC+AGG | + | chr2.3:30396533-30396552 | MS.gene066313:intron | 35.0% | |
| TTGTACTTGTAGAGACTATG+AGG | - | chr2.3:30396680-30396699 | None:intergenic | 35.0% | |
| TTTCATTCGCGATATCATGA+TGG | - | chr2.3:30398749-30398768 | None:intergenic | 35.0% | |
| ! | ATAGCTTGTGCTTCAATTTG+TGG | - | chr2.3:30396619-30396638 | None:intergenic | 35.0% |
| ! | TACACCAACATGATAACGTA+TGG | - | chr2.3:30396842-30396861 | None:intergenic | 35.0% |
| ! | TAGCTTGTGCTTCAATTTGT+GGG | - | chr2.3:30396618-30396637 | None:intergenic | 35.0% |
| ! | TGCAACATTATGGTGTCTTT+TGG | + | chr2.3:30397659-30397678 | MS.gene066313:intron | 35.0% |
| !! | AAAGAGGTACTTACAGCAAA+AGG | - | chr2.3:30395775-30395794 | None:intergenic | 35.0% |
| !! | AAGAGGTACTTACAGCAAAA+GGG | - | chr2.3:30395774-30395793 | None:intergenic | 35.0% |
| !! | GCGATATCATGATGGATAAT+TGG | - | chr2.3:30398741-30398760 | None:intergenic | 35.0% |
| !! | TGCAGCTGGAATTGTTATTT+AGG | + | chr2.3:30398692-30398711 | MS.gene066313:intron | 35.0% |
| !!! | TAATCACTTTGTTTTGCAGC+TGG | + | chr2.3:30398678-30398697 | MS.gene066313:intron | 35.0% |
| !!! | TTTTGGGTTTGCAATTCTTG+TGG | - | chr2.3:30396085-30396104 | None:intergenic | 35.0% |
| AAATTGTGACATGGTTCAGC+TGG | + | chr2.3:30396237-30396256 | MS.gene066313:intron | 40.0% | |
| AATTGTGACATGGTTCAGCT+GGG | + | chr2.3:30396238-30396257 | MS.gene066313:intron | 40.0% | |
| AGATAAGAAACAGGCAGTCA+AGG | - | chr2.3:30398319-30398338 | None:intergenic | 40.0% | |
| CAGCTCAAACATAGTAAGCA+GGG | + | chr2.3:30396040-30396059 | MS.gene066313:intron | 40.0% | |
| CCCTGCTATGAAGTAGATAA+TGG | - | chr2.3:30399192-30399211 | None:intergenic | 40.0% | |
| CTACTATGTGAGGATTCTGT+AGG | + | chr2.3:30398520-30398539 | MS.gene066313:intron | 40.0% | |
| GACACCATACGTTATCATGT+TGG | + | chr2.3:30396835-30396854 | MS.gene066313:intron | 40.0% | |
| GAGTCAGCTGGTATATACAA+TGG | - | chr2.3:30398557-30398576 | None:intergenic | 40.0% | |
| GATGAACACGTGCTCTATTT+GGG | + | chr2.3:30399071-30399090 | MS.gene066313:intron | 40.0% | |
| GCCATTATCTACTTCATAGC+AGG | + | chr2.3:30399188-30399207 | MS.gene066313:CDS | 40.0% | |
| GTAGAAACAACTACCTAGAC+CGG | + | chr2.3:30398198-30398217 | MS.gene066313:intron | 40.0% | |
| GTCTGCATTCAATTGAATGC+TGG | + | chr2.3:30398490-30398509 | MS.gene066313:intron | 40.0% | |
| TGATGAACACGTGCTCTATT+TGG | + | chr2.3:30399070-30399089 | MS.gene066313:intron | 40.0% | |
| TTGAATCCAACTCCAACAGA+GGG | - | chr2.3:30395944-30395963 | None:intergenic | 40.0% | |
| ! | AAATCGCCCTTGTTTGTTAC+AGG | + | chr2.3:30399146-30399165 | MS.gene066313:intron | 40.0% |
| ! | GCTCTATTTGGGTTATCGAA+TGG | + | chr2.3:30399082-30399101 | MS.gene066313:intron | 40.0% |
| ! | TATGGTGTCAATGTCGTGTT+CGG | - | chr2.3:30396824-30396843 | None:intergenic | 40.0% |
| ! | TTTTCTCAATTCAGCCTCCT+TGG | - | chr2.3:30398093-30398112 | None:intergenic | 40.0% |
| !! | AAAGAAGAAGGCATTTCACG+AGG | + | chr2.3:30398405-30398424 | MS.gene066313:CDS | 40.0% |
| !! | TGTTCGGTGTATGTGTCTAT+CGG | - | chr2.3:30396808-30396827 | None:intergenic | 40.0% |
| !! | TTGACTTGTTCTTCGTCGAA+GGG | - | chr2.3:30395751-30395770 | None:intergenic | 40.0% |
| AACCAGGAAGAGTAGGACTA+AGG | + | chr2.3:30397133-30397152 | MS.gene066313:intron | 45.0% | |
| AGCTCTTGAATTTGTGGCAG+GGG | - | chr2.3:30397839-30397858 | None:intergenic | 45.0% | |
| AGGTGCAGCTCTTGAATTTG+TGG | - | chr2.3:30397845-30397864 | None:intergenic | 45.0% | |
| AGTGCTACCTCACTCTGTAT+GGG | - | chr2.3:30398886-30398905 | None:intergenic | 45.0% | |
| CAGCTCTTGAATTTGTGGCA+GGG | - | chr2.3:30397840-30397859 | None:intergenic | 45.0% | |
| CATACCGTTGATGCATCAAG+AGG | - | chr2.3:30397922-30397941 | None:intergenic | 45.0% | |
| CCAGCTCAAACATAGTAAGC+AGG | + | chr2.3:30396039-30396058 | MS.gene066313:intron | 45.0% | |
| CCTGCTTACTATGTTTGAGC+TGG | - | chr2.3:30396042-30396061 | None:intergenic | 45.0% | |
| CTTGAATCCAACTCCAACAG+AGG | - | chr2.3:30395945-30395964 | None:intergenic | 45.0% | |
| GAAGTGAGACGGAAAGAAGA+AGG | + | chr2.3:30398393-30398412 | MS.gene066313:CDS | 45.0% | |
| GAGTAGGACTAAGGAATTCC+TGG | + | chr2.3:30397142-30397161 | MS.gene066313:intron | 45.0% | |
| GGGATTACTGTTGTAACGAC+CGG | - | chr2.3:30395731-30395750 | None:intergenic | 45.0% | |
| GTTAGTCGCTAAACTTGGGT+AGG | - | chr2.3:30397296-30397315 | None:intergenic | 45.0% | |
| TACCACATGACATATGCTCC+AGG | - | chr2.3:30399218-30399237 | None:intergenic | 45.0% | |
| TGTTTCGTTGAGTGTGTCAG+TGG | + | chr2.3:30399045-30399064 | MS.gene066313:intron | 45.0% | |
| TTCCTGGAGCATATGTCATG+TGG | + | chr2.3:30399213-30399232 | MS.gene066313:CDS | 45.0% | |
| TTCCTTAGTCCTACTCTTCC+TGG | - | chr2.3:30397138-30397157 | None:intergenic | 45.0% | |
| TTGCTTTCTTCTTGTGGGGA+AGG | + | chr2.3:30398841-30398860 | MS.gene066313:intron | 45.0% | |
| ! | CATGTTTAGAGTGAGTCAGC+TGG | - | chr2.3:30398569-30398588 | None:intergenic | 45.0% |
| ! | TCATTGAACATGGTTCGGCT+TGG | - | chr2.3:30397583-30397602 | None:intergenic | 45.0% |
| ! | TGCAGTCTTTGAAGGTGAAC+TGG | - | chr2.3:30398774-30398793 | None:intergenic | 45.0% |
| !! | CGGAAAGTACCATAGCACTT+TGG | - | chr2.3:30399358-30399377 | None:intergenic | 45.0% |
| !! | GTTGACTTGTTCTTCGTCGA+AGG | - | chr2.3:30395752-30395771 | None:intergenic | 45.0% |
| AACTAAGCTGCTCCCTCTGT+TGG | + | chr2.3:30395929-30395948 | MS.gene066313:intron | 50.0% | |
| AAGAGAACTCCAAGCCAAGG+AGG | + | chr2.3:30398076-30398095 | MS.gene066313:CDS | 50.0% | |
| GAAGCACAAGCTATCTCACC+TGG | + | chr2.3:30396625-30396644 | MS.gene066313:intron | 50.0% | |
| GAGTGCTACCTCACTCTGTA+TGG | - | chr2.3:30398887-30398906 | None:intergenic | 50.0% | |
| GCAGCTCTTGAATTTGTGGC+AGG | - | chr2.3:30397841-30397860 | None:intergenic | 50.0% | |
| GGAAAGAGAACTCCAAGCCA+AGG | + | chr2.3:30398073-30398092 | MS.gene066313:CDS | 50.0% | |
| TACCTCACTCTGTATGGGTG+CGG | - | chr2.3:30398881-30398900 | None:intergenic | 50.0% | |
| TACTTCATAGCAGGGGTTCC+TGG | + | chr2.3:30399197-30399216 | MS.gene066313:CDS | 50.0% | |
| TCAATTCAGCCTCCTTGGCT+TGG | - | chr2.3:30398088-30398107 | None:intergenic | 50.0% | |
| TCAGCACGTTCGGGATTAAG+AGG | - | chr2.3:30397865-30397884 | None:intergenic | 50.0% | |
| TTACCTGCAGCAGAATCACC+AGG | - | chr2.3:30396646-30396665 | None:intergenic | 50.0% | |
| ACCTCACTCTGTATGGGTGC+GGG | - | chr2.3:30398880-30398899 | None:intergenic | 55.0% | |
| TCACCTGGTGATTCTGCTGC+AGG | + | chr2.3:30396640-30396659 | MS.gene066313:intron | 55.0% | |
| TGTGTTAGATGCGGGCACGA+AGG | - | chr2.3:30397780-30397799 | None:intergenic | 55.0% | |
| GCTGCTCCCTCTGTTGGAGT+TGG | + | chr2.3:30395935-30395954 | MS.gene066313:intron | 60.0% | |
| GCCCGCACCCATACAGAGTG+AGG | + | chr2.3:30398876-30398895 | MS.gene066313:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 30395724 | 30399445 | 30395724 | ID=MS.gene066313 |
| chr2.3 | mRNA | 30395724 | 30399445 | 30395724 | ID=MS.gene066313.t1;Parent=MS.gene066313 |
| chr2.3 | exon | 30395724 | 30395780 | 30395724 | ID=MS.gene066313.t1.exon1;Parent=MS.gene066313.t1 |
| chr2.3 | CDS | 30395724 | 30395780 | 30395724 | ID=cds.MS.gene066313.t1;Parent=MS.gene066313.t1 |
| chr2.3 | exon | 30397820 | 30397936 | 30397820 | ID=MS.gene066313.t1.exon2;Parent=MS.gene066313.t1 |
| chr2.3 | CDS | 30397820 | 30397936 | 30397820 | ID=cds.MS.gene066313.t1;Parent=MS.gene066313.t1 |
| chr2.3 | exon | 30398059 | 30398121 | 30398059 | ID=MS.gene066313.t1.exon3;Parent=MS.gene066313.t1 |
| chr2.3 | CDS | 30398059 | 30398121 | 30398059 | ID=cds.MS.gene066313.t1;Parent=MS.gene066313.t1 |
| chr2.3 | exon | 30398393 | 30398426 | 30398393 | ID=MS.gene066313.t1.exon4;Parent=MS.gene066313.t1 |
| chr2.3 | CDS | 30398393 | 30398426 | 30398393 | ID=cds.MS.gene066313.t1;Parent=MS.gene066313.t1 |
| chr2.3 | exon | 30399168 | 30399234 | 30399168 | ID=MS.gene066313.t1.exon5;Parent=MS.gene066313.t1 |
| chr2.3 | CDS | 30399168 | 30399234 | 30399168 | ID=cds.MS.gene066313.t1;Parent=MS.gene066313.t1 |
| chr2.3 | exon | 30399355 | 30399445 | 30399355 | ID=MS.gene066313.t1.exon6;Parent=MS.gene066313.t1 |
| chr2.3 | CDS | 30399355 | 30399445 | 30399355 | ID=cds.MS.gene066313.t1;Parent=MS.gene066313.t1 |
| Gene Sequence |
| Protein sequence |
