Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072070.t1 | XP_003592934.2 | 89.9 | 227 | 16 | 2 | 1 | 224 | 1 | 223 | 1.10E-99 | 372.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072070.t1 | Q93W20 | 82.2 | 169 | 30 | 0 | 56 | 224 | 67 | 235 | 2.1e-72 | 273.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072070.t1 | G7IN99 | 89.9 | 227 | 16 | 2 | 1 | 224 | 1 | 223 | 7.7e-100 | 372.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene072070 | 0.833719 | 4.54E-56 | -1.69E-46 |
| MS.gene049356 | MS.gene072070 | 0.808879 | 2.49E-50 | -1.69E-46 |
| MS.gene049757 | MS.gene072070 | 0.852135 | 5.63E-61 | -1.69E-46 |
| MS.gene050060 | MS.gene072070 | 0.833901 | 4.09E-56 | -1.69E-46 |
| MS.gene050133 | MS.gene072070 | -0.803758 | 2.99E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene072070 | -0.837369 | 5.41E-57 | -1.69E-46 |
| MS.gene050553 | MS.gene072070 | 0.831341 | 1.76E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene072070 | 0.812444 | 4.23E-51 | -1.69E-46 |
| MS.gene050710 | MS.gene072070 | -0.80278 | 4.77E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene072070 | -0.803016 | 4.26E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene072070 | 0.833476 | 5.22E-56 | -1.69E-46 |
| MS.gene050971 | MS.gene072070 | 0.827424 | 1.58E-54 | -1.69E-46 |
| MS.gene051521 | MS.gene072070 | 0.832405 | 9.63E-56 | -1.69E-46 |
| MS.gene051617 | MS.gene072070 | 0.800386 | 1.48E-48 | -1.69E-46 |
| MS.gene051734 | MS.gene072070 | 0.800381 | 1.48E-48 | -1.69E-46 |
| MS.gene051838 | MS.gene072070 | 0.857121 | 2.03E-62 | -1.69E-46 |
| MS.gene052134 | MS.gene072070 | 0.824545 | 7.62E-54 | -1.69E-46 |
| MS.gene052135 | MS.gene072070 | 0.824458 | 7.99E-54 | -1.69E-46 |
| MS.gene052136 | MS.gene072070 | 0.827158 | 1.83E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene072070 | 0.822985 | 1.77E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene072070 | 0.805348 | 1.39E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene072070 | 0.859553 | 3.82E-63 | -1.69E-46 |
| MS.gene052469 | MS.gene072070 | 0.86672 | 2.32E-65 | -1.69E-46 |
| MS.gene053449 | MS.gene072070 | 0.822517 | 2.27E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene072070 | 0.813912 | 2.01E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene072070 | 0.841436 | 4.76E-58 | -1.69E-46 |
| MS.gene054349 | MS.gene072070 | 0.802886 | 4.53E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene072070 | -0.818863 | 1.57E-52 | -1.69E-46 |
| MS.gene054884 | MS.gene072070 | -0.807932 | 3.97E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene072070 | 0.839501 | 1.53E-57 | -1.69E-46 |
| MS.gene055539 | MS.gene072070 | 0.848002 | 8.09E-60 | -1.69E-46 |
| MS.gene05553 | MS.gene072070 | 0.80229 | 6.02E-49 | -1.69E-46 |
| MS.gene05556 | MS.gene072070 | 0.808134 | 3.59E-50 | -1.69E-46 |
| MS.gene055741 | MS.gene072070 | 0.857455 | 1.61E-62 | -1.69E-46 |
| MS.gene055744 | MS.gene072070 | 0.864742 | 9.77E-65 | -1.69E-46 |
| MS.gene056233 | MS.gene072070 | 0.833895 | 4.10E-56 | -1.69E-46 |
| MS.gene056283 | MS.gene072070 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene072070 | 0.830971 | 2.17E-55 | -1.69E-46 |
| MS.gene056511 | MS.gene072070 | 0.811258 | 7.66E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene072070 | 0.826407 | 2.76E-54 | -1.69E-46 |
| MS.gene056876 | MS.gene072070 | 0.804904 | 1.73E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene072070 | 0.830017 | 3.72E-55 | -1.69E-46 |
| MS.gene057199 | MS.gene072070 | 0.817167 | 3.79E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene072070 | 0.829386 | 5.30E-55 | -1.69E-46 |
| MS.gene057734 | MS.gene072070 | 0.807951 | 3.93E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene072070 | 0.821826 | 3.28E-53 | -1.69E-46 |
| MS.gene058090 | MS.gene072070 | 0.825321 | 5.00E-54 | -1.69E-46 |
| MS.gene058120 | MS.gene072070 | 0.819435 | 1.16E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene072070 | 0.817889 | 2.61E-52 | -1.69E-46 |
| MS.gene058448 | MS.gene072070 | 0.847525 | 1.09E-59 | -1.69E-46 |
| MS.gene058928 | MS.gene072070 | 0.800576 | 1.35E-48 | -1.69E-46 |
| MS.gene058948 | MS.gene072070 | 0.809262 | 2.06E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene072070 | -0.816066 | 6.70E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene072070 | 0.806201 | 9.23E-50 | -1.69E-46 |
| MS.gene059717 | MS.gene072070 | 0.903217 | 4.36E-79 | -1.69E-46 |
| MS.gene059788 | MS.gene072070 | 0.811654 | 6.28E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene072070 | 0.821651 | 3.61E-53 | -1.69E-46 |
| MS.gene059946 | MS.gene072070 | 0.818369 | 2.03E-52 | -1.69E-46 |
| MS.gene060717 | MS.gene072070 | 0.810616 | 1.05E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene072070 | 0.816284 | 5.99E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072070.t1 | MTR_2g005900 | 89.868 | 227 | 16 | 2 | 1 | 224 | 1 | 223 | 1.09e-142 | 397 |
| MS.gene072070.t1 | MTR_2g036690 | 74.510 | 153 | 39 | 0 | 72 | 224 | 89 | 241 | 1.99e-77 | 233 |
| MS.gene072070.t1 | MTR_2g036690 | 73.913 | 92 | 24 | 0 | 72 | 163 | 89 | 180 | 8.64e-42 | 141 |
| MS.gene072070.t1 | MTR_7g109850 | 43.312 | 157 | 83 | 3 | 68 | 223 | 63 | 214 | 1.06e-30 | 112 |
| MS.gene072070.t1 | MTR_8g038785 | 58.904 | 73 | 30 | 0 | 68 | 140 | 63 | 135 | 7.82e-21 | 90.9 |
| MS.gene072070.t1 | MTR_1g069215 | 46.667 | 60 | 30 | 1 | 86 | 143 | 200 | 259 | 3.31e-11 | 61.6 |
| MS.gene072070.t1 | MTR_3g073070 | 46.667 | 60 | 30 | 1 | 86 | 143 | 198 | 257 | 3.43e-11 | 61.6 |
| MS.gene072070.t1 | MTR_3g073070 | 43.548 | 62 | 33 | 1 | 85 | 144 | 197 | 258 | 3.60e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072070.t1 | AT5G49940 | 80.000 | 175 | 35 | 0 | 50 | 224 | 61 | 235 | 1.37e-98 | 286 |
| MS.gene072070.t1 | AT4G25910 | 61.364 | 220 | 70 | 4 | 6 | 224 | 30 | 235 | 9.10e-81 | 241 |
| MS.gene072070.t1 | AT5G49940 | 78.947 | 114 | 24 | 0 | 50 | 163 | 61 | 174 | 7.25e-60 | 186 |
| MS.gene072070.t1 | AT4G01940 | 36.813 | 182 | 107 | 4 | 38 | 213 | 44 | 223 | 5.60e-29 | 108 |
Find 65 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCGACTGCGACTATTTC+AGG | 0.155822 | 2.4:+76261245 | None:intergenic |
| TTCTGTTATGACAATGAAAA+TGG | 0.180204 | 2.4:-76261297 | MS.gene072070:CDS |
| GGCAATTCCACAGCTGAATT+TGG | 0.194360 | 2.4:+76261461 | None:intergenic |
| GGGCATTGAGCGTCGATTAA+TGG | 0.258243 | 2.4:-76261276 | MS.gene072070:CDS |
| TTCAGGTTCTAGAGGAATTA+AGG | 0.293515 | 2.4:-76259261 | MS.gene072070:intron |
| TGTTGTACGGTTGAAGTTAC+AGG | 0.305471 | 2.4:-76261342 | MS.gene072070:CDS |
| TTATGTTTGTACAGCTATAA+AGG | 0.329155 | 2.4:-76261495 | MS.gene072070:intron |
| TTCTTCCATCACCCTCAAAA+AGG | 0.340435 | 2.4:-76262757 | MS.gene072070:intron |
| GTGATTCGGACCTTTACTAT+TGG | 0.387716 | 2.4:+76259184 | None:intergenic |
| CCGGTTTCTTCATCAGTTAC+CGG | 0.393466 | 2.4:+76261224 | None:intergenic |
| CCGTACCTGGTAGGGGCAGC+TGG | 0.401375 | 2.4:-76259238 | MS.gene072070:CDS |
| TCCTTTCATACACGTCCGTT+TGG | 0.412463 | 2.4:-76262585 | MS.gene072070:intron |
| TGAAATAGTCGCAGTCGAAC+CGG | 0.432530 | 2.4:-76261243 | MS.gene072070:CDS |
| TCTTGAATTGGTAGCAATTG+AGG | 0.443279 | 2.4:-76259209 | MS.gene072070:CDS |
| TCTTTGTTGTTGCAGGGCAC+TGG | 0.448241 | 2.4:-76262666 | MS.gene072070:intron |
| AGCTGAACTGCTGCTATGGC+AGG | 0.451914 | 2.4:+76259097 | None:intergenic |
| AGCTGGTGGAACTCTTGAAT+TGG | 0.456731 | 2.4:-76259221 | MS.gene072070:CDS |
| AAACTGTGTTGGATGAAATT+CGG | 0.457743 | 2.4:-76261418 | MS.gene072070:CDS |
| CGGCAGCTGGACCTGTGATT+CGG | 0.465355 | 2.4:+76259170 | None:intergenic |
| ATAGTAAAGGTCCGAATCAC+AGG | 0.485942 | 2.4:-76259181 | MS.gene072070:CDS |
| TAGCAGCTGAACTGCTGCTA+TGG | 0.490395 | 2.4:+76259093 | None:intergenic |
| TTCATCATTTAGCTCGAGAC+CGG | 0.495683 | 2.4:+76261205 | None:intergenic |
| TCTGTTATGACAATGAAAAT+GGG | 0.498234 | 2.4:-76261296 | MS.gene072070:CDS |
| AGAAGAAGAAGAAGGTTGAA+GGG | 0.503550 | 2.4:+76262776 | None:intergenic |
| TTCCACCAGCTGCCCCTACC+AGG | 0.506704 | 2.4:+76259233 | None:intergenic |
| ACAGTCATGACACCGGCAGC+TGG | 0.515392 | 2.4:+76259157 | None:intergenic |
| TTGAAGTTACAGGGTGCCTG+TGG | 0.517377 | 2.4:-76261332 | MS.gene072070:CDS |
| AATTAAGGCCGTACCTGGTA+GGG | 0.517939 | 2.4:-76259246 | MS.gene072070:CDS |
| AGCTGAATTTGGAGTGGCAA+CGG | 0.519177 | 2.4:+76261472 | None:intergenic |
| CGAATCACAGGTCCAGCTGC+CGG | 0.519813 | 2.4:-76259169 | MS.gene072070:CDS |
| AGCACCACCACACCTTGCAT+CGG | 0.529473 | 2.4:+76262825 | None:intergenic |
| GTTCGACTGCGACTATTTCA+GGG | 0.533343 | 2.4:+76261246 | None:intergenic |
| TTCATTGTCATAACAGAACT+CGG | 0.533887 | 2.4:+76261302 | None:intergenic |
| GAATTAAGGCCGTACCTGGT+AGG | 0.540850 | 2.4:-76259247 | MS.gene072070:CDS |
| CCAGCTGCCCCTACCAGGTA+CGG | 0.552725 | 2.4:+76259238 | None:intergenic |
| CCGGTAACTGATGAAGAAAC+CGG | 0.553976 | 2.4:-76261224 | MS.gene072070:CDS |
| TGTTGTCCTAAAAGAAACAT+TGG | 0.558584 | 2.4:+76262641 | None:intergenic |
| AATTGAGGAGCCAATAGTAA+AGG | 0.562850 | 2.4:-76259194 | MS.gene072070:CDS |
| AGAGGAATTAAGGCCGTACC+TGG | 0.564029 | 2.4:-76259251 | MS.gene072070:CDS |
| ACCAAACGGACGTGTATGAA+AGG | 0.569126 | 2.4:+76262584 | None:intergenic |
| GAAAATCAGCACCCGATGCA+AGG | 0.579496 | 2.4:-76262837 | None:intergenic |
| CGGACGTGTATGAAAGGAAA+GGG | 0.582467 | 2.4:+76262590 | None:intergenic |
| TACCTGGTAGGGGCAGCTGG+TGG | 0.585925 | 2.4:-76259235 | MS.gene072070:CDS |
| AAAGGGAAGGACGCGGCAGA+AGG | 0.586202 | 2.4:+76262607 | None:intergenic |
| GTGACTGTTTCAGGTTCTAG+AGG | 0.588325 | 2.4:-76259269 | MS.gene072070:intron |
| ATTAAGGCCGTACCTGGTAG+GGG | 0.594661 | 2.4:-76259245 | MS.gene072070:CDS |
| CCACCGTCTGATATGAGATA+CGG | 0.596291 | 2.4:+76261395 | None:intergenic |
| TGAAAATGTAGAAACTGTGT+TGG | 0.605986 | 2.4:-76261429 | MS.gene072070:CDS |
| AAATGATGAAAATATAGAGA+AGG | 0.609423 | 2.4:-76261192 | MS.gene072070:intron |
| TGAAGTTACAGGGTGCCTGT+GGG | 0.613999 | 2.4:-76261331 | MS.gene072070:CDS |
| TTCCACAGCTGAATTTGGAG+TGG | 0.615913 | 2.4:+76261466 | None:intergenic |
| AGAACTCGGACACGACCCAC+AGG | 0.616393 | 2.4:+76261316 | None:intergenic |
| AAATCGATGGCAATGTTGTA+CGG | 0.617193 | 2.4:-76261355 | MS.gene072070:CDS |
| GTGATGGAAGAAGAAGAAGA+AGG | 0.618429 | 2.4:+76262768 | None:intergenic |
| GCACCCGATGCAAGGTGTGG+TGG | 0.624441 | 2.4:-76262829 | None:intergenic |
| ACGGACGTGTATGAAAGGAA+AGG | 0.624764 | 2.4:+76262589 | None:intergenic |
| GTCGCTCTACATGAAATCGA+TGG | 0.627147 | 2.4:-76261368 | MS.gene072070:CDS |
| TGCCACTCCAAATTCAGCTG+TGG | 0.629430 | 2.4:-76261468 | MS.gene072070:CDS |
| GTTGTACGGTTGAAGTTACA+GGG | 0.634834 | 2.4:-76261341 | MS.gene072070:CDS |
| CGGCCGTATCTCATATCAGA+CGG | 0.648569 | 2.4:-76261398 | MS.gene072070:CDS |
| AACACGCACAGTCATGACAC+CGG | 0.653006 | 2.4:+76259150 | None:intergenic |
| TCAGCACCCGATGCAAGGTG+TGG | 0.661795 | 2.4:-76262832 | None:intergenic |
| TGAAAGGAAAGGGAAGGACG+CGG | 0.666949 | 2.4:+76262600 | None:intergenic |
| CGTGTATGAAAGGAAAGGGA+AGG | 0.668106 | 2.4:+76262594 | None:intergenic |
| CCGTATCTCATATCAGACGG+TGG | 0.699947 | 2.4:-76261395 | MS.gene072070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATAATAATTAAAACG+AGG | + | chr2.4:76259220-76259239 | None:intergenic | 10.0% |
| !!! | AAAACTAATATTTTTTATGA+AGG | - | chr2.4:76261814-76261833 | MS.gene072070:intron | 10.0% |
| !!! | AAACTAATATTTTTTATGAA+GGG | - | chr2.4:76261815-76261834 | MS.gene072070:intron | 10.0% |
| !!! | ACATAATTTTTATAAATCAT+AGG | + | chr2.4:76261859-76261878 | None:intergenic | 10.0% |
| !!! | AGTTTTTAAAAATTGTTTTT+GGG | + | chr2.4:76261800-76261819 | None:intergenic | 10.0% |
| !!! | CATAATTTTTATAAATCATA+GGG | + | chr2.4:76261858-76261877 | None:intergenic | 10.0% |
| !!! | TAGTTTTTAAAAATTGTTTT+TGG | + | chr2.4:76261801-76261820 | None:intergenic | 10.0% |
| !!! | TGTGTTAATTTTTTTTTAAA+GGG | + | chr2.4:76261943-76261962 | None:intergenic | 10.0% |
| !! | ACTTATGAAAATATGTTAAA+AGG | + | chr2.4:76259864-76259883 | None:intergenic | 15.0% |
| !! | CTTATGAAAATATGTTAAAA+GGG | + | chr2.4:76259863-76259882 | None:intergenic | 15.0% |
| !! | CTTTACAACTTAAATAATAT+AGG | - | chr2.4:76261337-76261356 | MS.gene072070:CDS | 15.0% |
| !! | TATATTAGAGAATTTATGAA+AGG | + | chr2.4:76259706-76259725 | None:intergenic | 15.0% |
| !! | TTTAATTGAAGAAAAATAGT+TGG | + | chr2.4:76259550-76259569 | None:intergenic | 15.0% |
| !!! | GTGTGTTAATTTTTTTTTAA+AGG | + | chr2.4:76261944-76261963 | None:intergenic | 15.0% |
| !! | AAATGATGAAAATATAGAGA+AGG | - | chr2.4:76260720-76260739 | MS.gene072070:intron | 20.0% |
| !! | ACATAATGAACATTCAAATA+TGG | + | chr2.4:76260801-76260820 | None:intergenic | 20.0% |
| !! | AGAAATATTGAAGTTGAATT+TGG | + | chr2.4:76260320-76260339 | None:intergenic | 20.0% |
| !! | ATGAAAAAAATATAGCATCT+AGG | - | chr2.4:76260991-76261010 | MS.gene072070:intron | 20.0% |
| !! | ATTTAAAGAGATATGTAACT+CGG | - | chr2.4:76261205-76261224 | MS.gene072070:CDS | 20.0% |
| !! | CAGAAATTTAATCCTATTAT+TGG | + | chr2.4:76261553-76261572 | None:intergenic | 20.0% |
| !! | TAACTAAATAACTAACCAAA+CGG | + | chr2.4:76259345-76259364 | None:intergenic | 20.0% |
| !! | TGAAAAAAATATAGCATCTA+GGG | - | chr2.4:76260992-76261011 | MS.gene072070:intron | 20.0% |
| !! | TGTGGTGTATAATATAATAA+AGG | - | chr2.4:76261154-76261173 | MS.gene072070:intron | 20.0% |
| !! | TTAATATAACAACTCAGTTT+CGG | - | chr2.4:76260357-76260376 | MS.gene072070:intron | 20.0% |
| !!! | ACTTCTTTTCATAATAGAAA+GGG | - | chr2.4:76261580-76261599 | MS.gene072070:intron | 20.0% |
| !!! | ATTTTTATAAATCATAGGGT+TGG | + | chr2.4:76261854-76261873 | None:intergenic | 20.0% |
| !!! | GAAAATTTATAGCGTATTTT+AGG | - | chr2.4:76260834-76260853 | MS.gene072070:intron | 20.0% |
| !!! | TAATATTTTTTATGAAGGGT+TGG | - | chr2.4:76261819-76261838 | MS.gene072070:intron | 20.0% |
| !!! | TTAGATATATGTTTTCGAAT+TGG | - | chr2.4:76261274-76261293 | MS.gene072070:CDS | 20.0% |
| ! | AAAATAGTTGGAATTTGAAG+AGG | + | chr2.4:76259538-76259557 | None:intergenic | 25.0% |
| ! | AAACGATATACAGGTAAATT+TGG | + | chr2.4:76261373-76261392 | None:intergenic | 25.0% |
| ! | AAATAGTTGGAATTTGAAGA+GGG | + | chr2.4:76259537-76259556 | None:intergenic | 25.0% |
| ! | AAATTGAAGCATATAGTACT+TGG | - | chr2.4:76260933-76260952 | MS.gene072070:intron | 25.0% |
| ! | AATAATGAAGATCACATGTT+AGG | + | chr2.4:76260399-76260418 | None:intergenic | 25.0% |
| ! | AATTGAAGCATATAGTACTT+GGG | - | chr2.4:76260934-76260953 | MS.gene072070:intron | 25.0% |
| ! | ATCAGATTTAGAAACCAAAA+TGG | - | chr2.4:76261446-76261465 | MS.gene072070:CDS | 25.0% |
| ! | ATTCCTCTAACAAAAGATAA+AGG | + | chr2.4:76260194-76260213 | None:intergenic | 25.0% |
| ! | TATTATGAAAAGAAGTCAAG+AGG | + | chr2.4:76261576-76261595 | None:intergenic | 25.0% |
| ! | TCTGTTATGACAATGAAAAT+GGG | - | chr2.4:76260616-76260635 | MS.gene072070:intron | 25.0% |
| ! | TTATGTTTGTACAGCTATAA+AGG | - | chr2.4:76260417-76260436 | MS.gene072070:intron | 25.0% |
| ! | TTCCTCTAACAAAAGATAAA+GGG | + | chr2.4:76260193-76260212 | None:intergenic | 25.0% |
| ! | TTCTGTTATGACAATGAAAA+TGG | - | chr2.4:76260615-76260634 | MS.gene072070:intron | 25.0% |
| ! | TTGTGAAATTCAAACCATTT+GGG | - | chr2.4:76262117-76262136 | MS.gene072070:intron | 25.0% |
| !! | CTTCTTTTCATAATAGAAAG+GGG | - | chr2.4:76261581-76261600 | MS.gene072070:intron | 25.0% |
| !! | GACTTCTTTTCATAATAGAA+AGG | - | chr2.4:76261579-76261598 | MS.gene072070:intron | 25.0% |
| !! | TTTCTTTTAATGAAACGCAT+GGG | + | chr2.4:76262377-76262396 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGAACAGAAAAAC+AGG | + | chr2.4:76261716-76261735 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTCATTTTCTCTT+GGG | + | chr2.4:76261670-76261689 | None:intergenic | 25.0% |
| !!! | TCTCTTTTTTCATTTTCTCT+TGG | + | chr2.4:76261671-76261690 | None:intergenic | 25.0% |
| !!! | TCTTTTTTCATTTTCTCTTG+GGG | + | chr2.4:76261669-76261688 | None:intergenic | 25.0% |
| !!! | TTTACTTTTGAAAACACTTG+TGG | - | chr2.4:76261136-76261155 | MS.gene072070:intron | 25.0% |
| AAAACTTATGCTGTCTCAAA+TGG | + | chr2.4:76259617-76259636 | None:intergenic | 30.0% | |
| AAAAGAGAACAAAAACAACC+TGG | - | chr2.4:76261683-76261702 | MS.gene072070:intron | 30.0% | |
| AAACTGTGTTGGATGAAATT+CGG | - | chr2.4:76260494-76260513 | MS.gene072070:intron | 30.0% | |
| AAACTTATGCTGTCTCAAAT+GGG | + | chr2.4:76259616-76259635 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr2.4:76259837-76259856 | MS.gene072070:intron | 30.0% | |
| AATAGTTGGAATTTGAAGAG+GGG | + | chr2.4:76259536-76259555 | None:intergenic | 30.0% | |
| AATTCTATAACCAACCTACA+CGG | + | chr2.4:76262410-76262429 | None:intergenic | 30.0% | |
| AATTCTGTACACTGTCTATT+TGG | - | chr2.4:76262282-76262301 | MS.gene072070:intron | 30.0% | |
| ACAGACAGTTATGATGAATA+TGG | + | chr2.4:76259381-76259400 | None:intergenic | 30.0% | |
| AGTTATTTGAGTATATCCGT+TGG | + | chr2.4:76260157-76260176 | None:intergenic | 30.0% | |
| ATCATAACTGTCTGTATGTT+TGG | - | chr2.4:76259386-76259405 | MS.gene072070:intron | 30.0% | |
| GATCCGAAAACAAATTTATC+AGG | + | chr2.4:76261180-76261199 | None:intergenic | 30.0% | |
| GTCACTTATACATAAATGCA+TGG | + | chr2.4:76259463-76259482 | None:intergenic | 30.0% | |
| GTTGTGAAATTCAAACCATT+TGG | - | chr2.4:76262116-76262135 | MS.gene072070:intron | 30.0% | |
| TAATATGTAGTGACTGTTTC+AGG | - | chr2.4:76262634-76262653 | MS.gene072070:CDS | 30.0% | |
| TACATGAATGTGAATAAGCA+TGG | - | chr2.4:76260278-76260297 | MS.gene072070:intron | 30.0% | |
| TATATGGCTATCAAGACATA+TGG | + | chr2.4:76261885-76261904 | None:intergenic | 30.0% | |
| TATTTAGTTACCTACTTCCA+AGG | - | chr2.4:76259355-76259374 | MS.gene072070:intron | 30.0% | |
| TCAACTGTTATGCCAATAAT+AGG | - | chr2.4:76261538-76261557 | MS.gene072070:intron | 30.0% | |
| TGAAAATGTAGAAACTGTGT+TGG | - | chr2.4:76260483-76260502 | MS.gene072070:intron | 30.0% | |
| TGACTAACAAACTAACCAAA+TGG | + | chr2.4:76259501-76259520 | None:intergenic | 30.0% | |
| TGTTGTCCTAAAAGAAACAT+TGG | + | chr2.4:76259274-76259293 | None:intergenic | 30.0% | |
| TTCATTGTCATAACAGAACT+CGG | + | chr2.4:76260613-76260632 | None:intergenic | 30.0% | |
| TTTCTGTACATGTAGGATTA+TGG | - | chr2.4:76262445-76262464 | MS.gene072070:intron | 30.0% | |
| ! | AAATGAAACCTACCTTTTTG+AGG | + | chr2.4:76259170-76259189 | None:intergenic | 30.0% |
| ! | AATGAAACCTACCTTTTTGA+GGG | + | chr2.4:76259169-76259188 | None:intergenic | 30.0% |
| ! | CTCTGCTTCTATTTTGTAAA+AGG | + | chr2.4:76261632-76261651 | None:intergenic | 30.0% |
| ! | CTTTCTTTTAATGAAACGCA+TGG | + | chr2.4:76262378-76262397 | None:intergenic | 30.0% |
| ! | GATCTGATAATTGACTTCAA+AGG | - | chr2.4:76262010-76262029 | MS.gene072070:intron | 30.0% |
| ! | TCTACATTTTCAGCAGTTAA+TGG | + | chr2.4:76260475-76260494 | None:intergenic | 30.0% |
| !! | AGGCCTGATAAATTTGTTTT+CGG | - | chr2.4:76261174-76261193 | MS.gene072070:intron | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr2.4:76259628-76259647 | MS.gene072070:intron | 30.0% |
| !! | ATACTTTCTTTGTTGTTGCA+GGG | - | chr2.4:76259240-76259259 | MS.gene072070:CDS | 30.0% |
| !! | CGTTTACATAAGCTTTAAGA+GGG | - | chr2.4:76260885-76260904 | MS.gene072070:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | - | chr2.4:76259629-76259648 | MS.gene072070:intron | 30.0% |
| !! | TATACTTTCTTTGTTGTTGC+AGG | - | chr2.4:76259239-76259258 | MS.gene072070:CDS | 30.0% |
| AAATCGATGGCAATGTTGTA+CGG | - | chr2.4:76260557-76260576 | MS.gene072070:intron | 35.0% | |
| AACAACTCAGTTTCGGAAAT+TGG | - | chr2.4:76260364-76260383 | MS.gene072070:intron | 35.0% | |
| AAGAAGAAGAAGAAGGTTGA+AGG | + | chr2.4:76259140-76259159 | None:intergenic | 35.0% | |
| AAGGCTAGACATTTACTAAC+TGG | + | chr2.4:76262244-76262263 | None:intergenic | 35.0% | |
| AATTGAGGAGCCAATAGTAA+AGG | - | chr2.4:76262718-76262737 | MS.gene072070:intron | 35.0% | |
| ACAACTCAGTTTCGGAAATT+GGG | - | chr2.4:76260365-76260384 | MS.gene072070:intron | 35.0% | |
| AGAAGAAGAAGAAGGTTGAA+GGG | + | chr2.4:76259139-76259158 | None:intergenic | 35.0% | |
| AGGATTATGGTTATTGAGTC+TGG | - | chr2.4:76262458-76262477 | MS.gene072070:intron | 35.0% | |
| AGTTATGATGAATATGGCCT+TGG | + | chr2.4:76259375-76259394 | None:intergenic | 35.0% | |
| ATATAACACTCACCAATCGA+GGG | - | chr2.4:76261900-76261919 | MS.gene072070:intron | 35.0% | |
| ATATGTTAAAAGGGCCTGTT+TGG | + | chr2.4:76259854-76259873 | None:intergenic | 35.0% | |
| ATGTGTAACTTCATCCCAAA+TGG | + | chr2.4:76262134-76262153 | None:intergenic | 35.0% | |
| CAAAAGATAAAGGGTCTGTT+TGG | + | chr2.4:76260184-76260203 | None:intergenic | 35.0% | |
| TCACTCTAACCCATAAAACA+TGG | + | chr2.4:76261480-76261499 | None:intergenic | 35.0% | |
| TCTCACAAAACTTATGCCAA+CGG | - | chr2.4:76260138-76260157 | MS.gene072070:intron | 35.0% | |
| TGAGTAACAGCAACAGTTAA+AGG | + | chr2.4:76262263-76262282 | None:intergenic | 35.0% | |
| TTCAACGATACACATCCATT+TGG | - | chr2.4:76259483-76259502 | MS.gene072070:intron | 35.0% | |
| ! | ACACCTGTAGTTGAAGTTTT+TGG | - | chr2.4:76261960-76261979 | MS.gene072070:intron | 35.0% |
| ! | CACCTGTAGTTGAAGTTTTT+GGG | - | chr2.4:76261961-76261980 | MS.gene072070:intron | 35.0% |
| ! | CTGGTACCAATGTTTCTTTT+AGG | - | chr2.4:76259265-76259284 | MS.gene072070:intron | 35.0% |
| ! | GACCCTTTATCTTTTGTTAG+AGG | - | chr2.4:76260188-76260207 | MS.gene072070:intron | 35.0% |
| ! | GCTATAGAAGTAGCTTTTGT+AGG | - | chr2.4:76259782-76259801 | MS.gene072070:intron | 35.0% |
| ! | TCTTGAATTGGTAGCAATTG+AGG | - | chr2.4:76262703-76262722 | MS.gene072070:intron | 35.0% |
| !! | AAGTTTTGTGAGACTGTTTG+GGG | - | chr2.4:76259630-76259649 | MS.gene072070:intron | 35.0% |
| !! | ATTTGGTGGTATGGGATTTT+AGG | - | chr2.4:76262299-76262318 | MS.gene072070:intron | 35.0% |
| !! | GCGTTTACATAAGCTTTAAG+AGG | - | chr2.4:76260884-76260903 | MS.gene072070:intron | 35.0% |
| !! | TTCAGGTTCTAGAGGAATTA+AGG | - | chr2.4:76262651-76262670 | MS.gene072070:CDS | 35.0% |
| !! | TTTATGGGTTAGAGTGACAA+AGG | - | chr2.4:76261483-76261502 | MS.gene072070:CDS | 35.0% |
| !!! | GCAGAAGTACCATGTTTTAT+GGG | - | chr2.4:76261468-76261487 | MS.gene072070:CDS | 35.0% |
| AATGTGAATAAGCATGGCAC+TGG | - | chr2.4:76260284-76260303 | MS.gene072070:intron | 40.0% | |
| AGAAAGGGGATGAGTAATTG+AGG | - | chr2.4:76261595-76261614 | MS.gene072070:intron | 40.0% | |
| AGAGAACAAAAACAACCTGG+AGG | - | chr2.4:76261686-76261705 | MS.gene072070:intron | 40.0% | |
| ATAGTAAAGGTCCGAATCAC+AGG | - | chr2.4:76262731-76262750 | MS.gene072070:intron | 40.0% | |
| ATGCTGTCTCAAATGGGATT+GGG | + | chr2.4:76259610-76259629 | None:intergenic | 40.0% | |
| CATATAACACTCACCAATCG+AGG | - | chr2.4:76261899-76261918 | MS.gene072070:intron | 40.0% | |
| CTAACTGGCTACTTCTTACA+AGG | + | chr2.4:76262229-76262248 | None:intergenic | 40.0% | |
| CTCCCAAAAACTTCAACTAC+AGG | + | chr2.4:76261966-76261985 | None:intergenic | 40.0% | |
| CTCGATTGGTGAGTGTTATA+TGG | + | chr2.4:76261901-76261920 | None:intergenic | 40.0% | |
| GGTAGGCTTAAACGATATAC+AGG | + | chr2.4:76261382-76261401 | None:intergenic | 40.0% | |
| GTTGTACGGTTGAAGTTACA+GGG | - | chr2.4:76260571-76260590 | MS.gene072070:intron | 40.0% | |
| TATGCTGTCTCAAATGGGAT+TGG | + | chr2.4:76259611-76259630 | None:intergenic | 40.0% | |
| TCTGTACACTGTCTATTTGG+TGG | - | chr2.4:76262285-76262304 | MS.gene072070:intron | 40.0% | |
| TGAAGCATATAGTACTTGGG+CGG | - | chr2.4:76260937-76260956 | MS.gene072070:intron | 40.0% | |
| TGTTGTACGGTTGAAGTTAC+AGG | - | chr2.4:76260570-76260589 | MS.gene072070:intron | 40.0% | |
| TTCTTCCATCACCCTCAAAA+AGG | - | chr2.4:76259155-76259174 | MS.gene072070:CDS | 40.0% | |
| ! | ACACTGTCTATTTGGTGGTA+TGG | - | chr2.4:76262290-76262309 | MS.gene072070:intron | 40.0% |
| ! | ATGAATATGGCCTTGGAAGT+AGG | + | chr2.4:76259368-76259387 | None:intergenic | 40.0% |
| ! | CACTGTCTATTTGGTGGTAT+GGG | - | chr2.4:76262291-76262310 | MS.gene072070:intron | 40.0% |
| ! | CTGCGTTTTTCTGTACATGT+AGG | - | chr2.4:76262438-76262457 | MS.gene072070:intron | 40.0% |
| ! | GTGATGGAAGAAGAAGAAGA+AGG | + | chr2.4:76259147-76259166 | None:intergenic | 40.0% |
| ! | GTGATTCGGACCTTTACTAT+TGG | + | chr2.4:76262731-76262750 | None:intergenic | 40.0% |
| ! | TTCATCATTTAGCTCGAGAC+CGG | + | chr2.4:76260710-76260729 | None:intergenic | 40.0% |
| !! | ACATGGTACTTCTGCCATTT+TGG | + | chr2.4:76261463-76261482 | None:intergenic | 40.0% |
| !! | AGTTTTGTGAGACTGTTTGG+GGG | - | chr2.4:76259631-76259650 | MS.gene072070:intron | 40.0% |
| !!! | GGCAGAAGTACCATGTTTTA+TGG | - | chr2.4:76261467-76261486 | MS.gene072070:CDS | 40.0% |
| AATTAAGGCCGTACCTGGTA+GGG | - | chr2.4:76262666-76262685 | MS.gene072070:intron | 45.0% | |
| ACCAAACGGACGTGTATGAA+AGG | + | chr2.4:76259331-76259350 | None:intergenic | 45.0% | |
| ACGGACGTGTATGAAAGGAA+AGG | + | chr2.4:76259326-76259345 | None:intergenic | 45.0% | |
| AGAAAAACAGGAACACCTCC+AGG | + | chr2.4:76261704-76261723 | None:intergenic | 45.0% | |
| AGCTGGTGGAACTCTTGAAT+TGG | - | chr2.4:76262691-76262710 | MS.gene072070:intron | 45.0% | |
| AGTTTCGGAAATTGGGAGCT+GGG | - | chr2.4:76260372-76260391 | MS.gene072070:intron | 45.0% | |
| CCACCGTCTGATATGAGATA+CGG | + | chr2.4:76260520-76260539 | None:intergenic | 45.0% | |
| CCGGTAACTGATGAAGAAAC+CGG | - | chr2.4:76260688-76260707 | MS.gene072070:intron | 45.0% | |
| CCGGTTTCTTCATCAGTTAC+CGG | + | chr2.4:76260691-76260710 | None:intergenic | 45.0% | |
| CGGACGTGTATGAAAGGAAA+GGG | + | chr2.4:76259325-76259344 | None:intergenic | 45.0% | |
| CGTGTATGAAAGGAAAGGGA+AGG | + | chr2.4:76259321-76259340 | None:intergenic | 45.0% | |
| GAAAGATGCTTTGTCCGTGT+AGG | - | chr2.4:76262393-76262412 | MS.gene072070:intron | 45.0% | |
| GGCAATTCCACAGCTGAATT+TGG | + | chr2.4:76260454-76260473 | None:intergenic | 45.0% | |
| GTCGCTCTACATGAAATCGA+TGG | - | chr2.4:76260544-76260563 | MS.gene072070:intron | 45.0% | |
| GTTCGACTGCGACTATTTCA+GGG | + | chr2.4:76260669-76260688 | None:intergenic | 45.0% | |
| TCCATCACCCTCAAAAAGGT+AGG | - | chr2.4:76259159-76259178 | MS.gene072070:CDS | 45.0% | |
| TCCTTTCATACACGTCCGTT+TGG | - | chr2.4:76259327-76259346 | MS.gene072070:intron | 45.0% | |
| TGAAATAGTCGCAGTCGAAC+CGG | - | chr2.4:76260669-76260688 | MS.gene072070:intron | 45.0% | |
| TTCCACAGCTGAATTTGGAG+TGG | + | chr2.4:76260449-76260468 | None:intergenic | 45.0% | |
| ! | AGCTGAATTTGGAGTGGCAA+CGG | + | chr2.4:76260443-76260462 | None:intergenic | 45.0% |
| ! | GTTTTGTGAGACTGTTTGGG+GGG | - | chr2.4:76259632-76259651 | MS.gene072070:intron | 45.0% |
| !! | ACCTACCTTTTTGAGGGTGA+TGG | + | chr2.4:76259163-76259182 | None:intergenic | 45.0% |
| !! | AGGAGGCATTGCAATCATAC+TGG | - | chr2.4:76261414-76261433 | MS.gene072070:CDS | 45.0% |
| !! | ATGGGTTAGAGTGACAAAGG+AGG | - | chr2.4:76261486-76261505 | MS.gene072070:intron | 45.0% |
| !! | GGAGGCATTGCAATCATACT+GGG | - | chr2.4:76261415-76261434 | MS.gene072070:CDS | 45.0% |
| !! | GTGACTGTTTCAGGTTCTAG+AGG | - | chr2.4:76262643-76262662 | MS.gene072070:CDS | 45.0% |
| AACACGCACAGTCATGACAC+CGG | + | chr2.4:76262765-76262784 | None:intergenic | 50.0% | |
| AGAGGAATTAAGGCCGTACC+TGG | - | chr2.4:76262661-76262680 | MS.gene072070:intron | 50.0% | |
| AGCCTACCAGCTAGATTCAG+AGG | - | chr2.4:76261394-76261413 | MS.gene072070:CDS | 50.0% | |
| ATGCCTCCTCTGAATCTAGC+TGG | + | chr2.4:76261403-76261422 | None:intergenic | 50.0% | |
| ATTAAGGCCGTACCTGGTAG+GGG | - | chr2.4:76262667-76262686 | MS.gene072070:intron | 50.0% | |
| CAGTTTCGGAAATTGGGAGC+TGG | - | chr2.4:76260371-76260390 | MS.gene072070:intron | 50.0% | |
| CCGTATCTCATATCAGACGG+TGG | - | chr2.4:76260517-76260536 | MS.gene072070:intron | 50.0% | |
| CGGCCGTATCTCATATCAGA+CGG | - | chr2.4:76260514-76260533 | MS.gene072070:intron | 50.0% | |
| CTACCAGCTAGATTCAGAGG+AGG | - | chr2.4:76261397-76261416 | MS.gene072070:CDS | 50.0% | |
| CTCCTCTGAATCTAGCTGGT+AGG | + | chr2.4:76261399-76261418 | None:intergenic | 50.0% | |
| GAATTAAGGCCGTACCTGGT+AGG | - | chr2.4:76262665-76262684 | MS.gene072070:intron | 50.0% | |
| GATGCTTTGTCCGTGTAGGT+TGG | - | chr2.4:76262397-76262416 | MS.gene072070:intron | 50.0% | |
| GGTTCGACTGCGACTATTTC+AGG | + | chr2.4:76260670-76260689 | None:intergenic | 50.0% | |
| GTCTCAAATGGGATTGGGCA+TGG | + | chr2.4:76259605-76259624 | None:intergenic | 50.0% | |
| TAGCAGCTGAACTGCTGCTA+TGG | + | chr2.4:76262822-76262841 | None:intergenic | 50.0% | |
| TGAAAGGAAAGGGAAGGACG+CGG | + | chr2.4:76259315-76259334 | None:intergenic | 50.0% | |
| TGCCACTCCAAATTCAGCTG+TGG | - | chr2.4:76260444-76260463 | MS.gene072070:intron | 50.0% | |
| ! | GTGAATAAGCATGGCACTGG+AGG | - | chr2.4:76260287-76260306 | MS.gene072070:intron | 50.0% |
| ! | TGAAGTTACAGGGTGCCTGT+GGG | - | chr2.4:76260581-76260600 | MS.gene072070:intron | 50.0% |
| ! | TTGAAGTTACAGGGTGCCTG+TGG | - | chr2.4:76260580-76260599 | MS.gene072070:intron | 50.0% |
| !! | GGGCATTGAGCGTCGATTAA+TGG | - | chr2.4:76260636-76260655 | MS.gene072070:intron | 50.0% |
| !! | TCTTTGTTGTTGCAGGGCAC+TGG | - | chr2.4:76259246-76259265 | MS.gene072070:CDS | 50.0% |
| AGCTGAACTGCTGCTATGGC+AGG | + | chr2.4:76262818-76262837 | None:intergenic | 55.0% | |
| ATGCCACACTCACCCTCGAT+TGG | + | chr2.4:76261915-76261934 | None:intergenic | 55.0% | |
| TCACCAATCGAGGGTGAGTG+TGG | - | chr2.4:76261909-76261928 | MS.gene072070:intron | 55.0% | |
| AAAGGGAAGGACGCGGCAGA+AGG | + | chr2.4:76259308-76259327 | None:intergenic | 60.0% | |
| ACAGTCATGACACCGGCAGC+TGG | + | chr2.4:76262758-76262777 | None:intergenic | 60.0% | |
| AGAACTCGGACACGACCCAC+AGG | + | chr2.4:76260599-76260618 | None:intergenic | 60.0% | |
| CGAATCACAGGTCCAGCTGC+CGG | - | chr2.4:76262743-76262762 | MS.gene072070:intron | 60.0% | |
| CGGCAGCTGGACCTGTGATT+CGG | + | chr2.4:76262745-76262764 | None:intergenic | 60.0% | |
| CCAGCTGCCCCTACCAGGTA+CGG | + | chr2.4:76262677-76262696 | None:intergenic | 65.0% | |
| TACCTGGTAGGGGCAGCTGG+TGG | - | chr2.4:76262677-76262696 | MS.gene072070:intron | 65.0% | |
| TTCCACCAGCTGCCCCTACC+AGG | + | chr2.4:76262682-76262701 | None:intergenic | 65.0% | |
| CCGTACCTGGTAGGGGCAGC+TGG | - | chr2.4:76262674-76262693 | MS.gene072070:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 76259090 | 76262844 | 76259090 | ID=MS.gene072070 |
| chr2.4 | mRNA | 76259090 | 76262844 | 76259090 | ID=MS.gene072070.t1;Parent=MS.gene072070 |
| chr2.4 | exon | 76262758 | 76262844 | 76262758 | ID=MS.gene072070.t1.exon1;Parent=MS.gene072070.t1 |
| chr2.4 | CDS | 76262758 | 76262844 | 76262758 | ID=cds.MS.gene072070.t1;Parent=MS.gene072070.t1 |
| chr2.4 | exon | 76262586 | 76262673 | 76262586 | ID=MS.gene072070.t1.exon2;Parent=MS.gene072070.t1 |
| chr2.4 | CDS | 76262586 | 76262673 | 76262586 | ID=cds.MS.gene072070.t1;Parent=MS.gene072070.t1 |
| chr2.4 | exon | 76261193 | 76261503 | 76261193 | ID=MS.gene072070.t1.exon3;Parent=MS.gene072070.t1 |
| chr2.4 | CDS | 76261193 | 76261503 | 76261193 | ID=cds.MS.gene072070.t1;Parent=MS.gene072070.t1 |
| chr2.4 | exon | 76259090 | 76259278 | 76259090 | ID=MS.gene072070.t1.exon4;Parent=MS.gene072070.t1 |
| chr2.4 | CDS | 76259090 | 76259278 | 76259090 | ID=cds.MS.gene072070.t1;Parent=MS.gene072070.t1 |
| Gene Sequence |
| Protein sequence |
