AlfalfaGEDB | MS.gene07450

M. sativa cultivar XinJiangDaYe / MS.gene07450

KEGG: K15777
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006725 GO:0008150 GO:0008152 GO:0008198 GO:0008270 GO:0009987 GO:0016491 GO:0016701 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0046914 GO:0055114
PFAM: PF02900.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07450.t1	XP_013468810.2	100	160	0	0	1	160	25	184	4.20E-90	340.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07450.t1	Q949R4	66.9	160	51	2	3	160	4	163	2.7e-61	236.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07450.t1	A0A072VM25	100.0	160	0	0	1	160	1	160	3.0e-90	340.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene07450	0.83247	9.28E-56	-1.69E-46
MS.gene04919	MS.gene07450	0.831887	1.29E-55	-1.69E-46
MS.gene04920	MS.gene07450	0.841659	4.15E-58	-1.69E-46
MS.gene049283	MS.gene07450	0.839912	1.19E-57	-1.69E-46
MS.gene049499	MS.gene07450	0.809159	2.17E-50	-1.69E-46
MS.gene049680	MS.gene07450	0.823894	1.08E-53	-1.69E-46
MS.gene049983	MS.gene07450	0.805449	1.33E-49	-1.69E-46
MS.gene04998	MS.gene07450	0.809962	1.46E-50	-1.69E-46
MS.gene050359	MS.gene07450	0.814679	1.36E-51	-1.69E-46
MS.gene050414	MS.gene07450	0.825441	4.68E-54	-1.69E-46
MS.gene050646	MS.gene07450	0.831958	1.24E-55	-1.69E-46
MS.gene050945	MS.gene07450	0.818085	2.36E-52	-1.69E-46
MS.gene051043	MS.gene07450	0.826354	2.84E-54	-1.69E-46
MS.gene051154	MS.gene07450	0.806699	7.25E-50	-1.69E-46
MS.gene051699	MS.gene07450	0.832544	8.90E-56	-1.69E-46
MS.gene051832	MS.gene07450	0.820675	6.05E-53	-1.69E-46
MS.gene051959	MS.gene07450	0.836626	8.38E-57	-1.69E-46
MS.gene051960	MS.gene07450	0.836486	9.10E-57	-1.69E-46
MS.gene052016	MS.gene07450	0.818517	1.88E-52	-1.69E-46
MS.gene052118	MS.gene07450	0.831917	1.27E-55	-1.69E-46
MS.gene052296	MS.gene07450	0.804611	1.99E-49	-1.69E-46
MS.gene052307	MS.gene07450	0.800599	1.34E-48	-1.69E-46
MS.gene052533	MS.gene07450	0.832822	7.59E-56	-1.69E-46
MS.gene052570	MS.gene07450	0.804053	2.60E-49	-1.69E-46
MS.gene052793	MS.gene07450	0.811685	6.19E-51	-1.69E-46
MS.gene053094	MS.gene07450	0.826851	2.16E-54	-1.69E-46
MS.gene053228	MS.gene07450	0.823879	1.09E-53	-1.69E-46
MS.gene053575	MS.gene07450	0.801116	1.05E-48	-1.69E-46
MS.gene053879	MS.gene07450	0.825893	3.66E-54	-1.69E-46
MS.gene053963	MS.gene07450	0.807204	5.67E-50	-1.69E-46
MS.gene054684	MS.gene07450	0.817362	3.43E-52	-1.69E-46
MS.gene054892	MS.gene07450	0.870873	1.05E-66	-1.69E-46
MS.gene054893	MS.gene07450	0.876844	1.01E-68	-1.69E-46
MS.gene055150	MS.gene07450	0.852763	3.73E-61	-1.69E-46
MS.gene055229	MS.gene07450	0.806394	8.40E-50	-1.69E-46
MS.gene056082	MS.gene07450	0.814785	1.29E-51	-1.69E-46
MS.gene05624	MS.gene07450	0.828726	7.66E-55	-1.69E-46
MS.gene056677	MS.gene07450	0.865372	6.19E-65	-1.69E-46
MS.gene056699	MS.gene07450	0.813901	2.02E-51	-1.69E-46
MS.gene05686	MS.gene07450	0.805391	1.37E-49	-1.69E-46
MS.gene057102	MS.gene07450	0.818145	2.28E-52	-1.69E-46
MS.gene057174	MS.gene07450	0.823225	1.55E-53	-1.69E-46
MS.gene057622	MS.gene07450	0.833585	4.90E-56	-1.69E-46
MS.gene058095	MS.gene07450	0.832703	8.13E-56	-1.69E-46
MS.gene058159	MS.gene07450	0.828775	7.45E-55	-1.69E-46
MS.gene058279	MS.gene07450	0.801382	9.24E-49	-1.69E-46
MS.gene058592	MS.gene07450	0.859532	3.88E-63	-1.69E-46
MS.gene05878	MS.gene07450	0.844911	5.64E-59	-1.69E-46
MS.gene059170	MS.gene07450	0.832435	9.47E-56	-1.69E-46
MS.gene05952	MS.gene07450	0.891545	3.60E-74	-1.69E-46
MS.gene05956	MS.gene07450	0.829059	6.36E-55	-1.69E-46
MS.gene05985	MS.gene07450	-0.842657	2.26E-58	-1.69E-46
MS.gene059901	MS.gene07450	-0.814479	1.51E-51	-1.69E-46
MS.gene06023	MS.gene07450	0.867936	9.47E-66	-1.69E-46
MS.gene060259	MS.gene07450	0.819507	1.12E-52	-1.69E-46
MS.gene060412	MS.gene07450	0.819421	1.17E-52	-1.69E-46
MS.gene060413	MS.gene07450	0.821963	3.05E-53	-1.69E-46
MS.gene060522	MS.gene07450	0.826889	2.12E-54	-1.69E-46
MS.gene060840	MS.gene07450	0.808298	3.32E-50	-1.69E-46
MS.gene060937	MS.gene07450	0.800548	1.37E-48	-1.69E-46
MS.gene060964	MS.gene07450	0.800351	1.50E-48	-1.69E-46
MS.gene061100	MS.gene07450	0.843633	1.24E-58	-1.69E-46
MS.gene061188	MS.gene07450	0.806886	6.62E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07450.t1	MTR_1g077030	100.000	160	0	0	1	160	1	160	3.65e-117	332
MS.gene07450.t1	MTR_6g064960	79.012	162	32	2	1	160	1	162	1.77e-91	267
MS.gene07450.t1	MTR_6g036660	56.471	85	7	1	76	160	9	63	3.70e-21	84.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07450.t1	AT4G15093	66.875	160	51	2	3	160	4	163	2.27e-77	231

Find 0 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AGATAGATATAAAACAAAAA+TGG	+	8694:1098-1117	MS.gene07450:intergenic	15.0%
!!	CAAGATTTATTCCATTAAAT+GGG	+	8694:737-756	MS.gene07450:intergenic	20.0%
!	AAGAAATTGTAGCAATAGAT+TGG	-	8694:804-823	MS.gene07450:intron	25.0%
!	ATATGCATACATTACACATT+AGG	-	8694:859-878	MS.gene07450:intron	25.0%
!	ATTACATCTTGAAATTTGAG+CGG	-	8694:663-682	MS.gene07450:intron	25.0%
!	ATTGTGATTAACAACGTTAA+CGG	+	8694:519-538	MS.gene07450:intergenic	25.0%
!	CCAAGATTTATTCCATTAAA+TGG	+	8694:738-757	MS.gene07450:intergenic	25.0%
!	CCATTTAATGGAATAAATCT+TGG	-	8694:735-754	MS.gene07450:intron	25.0%
!	GGAATCTGAATTAAACAATT+AGG	+	8694:942-961	MS.gene07450:intergenic	25.0%
!	TTTATTCCATTAAATGGGAT+CGG	+	8694:732-751	MS.gene07450:intergenic	25.0%
!!!	TTGCTTTTCCTAAGTTATAA+TGG	+	8694:1347-1366	MS.gene07450:intergenic	25.0%
	AAAACAAAAATGGACCATTG+TGG	+	8694:1088-1107	MS.gene07450:intergenic	30.0%
	AATGAAACCATCCATGATTT+CGG	-	8694:536-555	MS.gene07450:CDS	30.0%
	CTATTGAATCATAACTGATC+CGG	-	8694:902-921	MS.gene07450:intron	30.0%
	GATTGGATAAACAAACATTG+AGG	-	8694:821-840	MS.gene07450:intron	30.0%
	GGTACTTACCATTATAACTT+AGG	-	8694:1336-1355	MS.gene07450:CDS	30.0%
	TAGCTCTTCAATTGATACTT+AGG	+	8694:1035-1054	MS.gene07450:intergenic	30.0%
	TATACCAGTATGTCAACTTT+CGG	-	8694:1296-1315	MS.gene07450:CDS	30.0%
	TATTGAATCATAACTGATCC+GGG	-	8694:903-922	MS.gene07450:intron	30.0%
	TCGGTTTCATCAAATAGAAA+TGG	-	8694:1315-1334	MS.gene07450:CDS	30.0%
	TTAATTCAGATTCCGAACTT+TGG	-	8694:948-967	MS.gene07450:intron	30.0%
	TTTCGATTCTCAAACAGATT+TGG	+	8694:780-799	MS.gene07450:intergenic	30.0%
!	GAAACGTTTTACATATCACA+TGG	-	8694:365-384	MS.gene07450:CDS	30.0%
!!!	TTTCGGTATCGATTTGTTTT+TGG	-	8694:995-1014	MS.gene07450:intron	30.0%
	AATAGCTCCTCTTAAAGATG+AGG	-	8694:1365-1384	MS.gene07450:CDS	35.0%
	ATAGCTCCTCTTAAAGATGA+GGG	-	8694:1366-1385	MS.gene07450:CDS	35.0%
	ATGACCAGAGATAACAAGAA+TGG	+	8694:477-496	MS.gene07450:intergenic	35.0%
	ATTCTTGACATCATGGAAAG+AGG	-	8694:430-449	MS.gene07450:CDS	35.0%
	CATGGAAATTCTTGACATCA+TGG	-	8694:423-442	MS.gene07450:CDS	35.0%
	GAAACTAGAGTCCAATCATT+CGG	+	8694:979-998	MS.gene07450:intergenic	35.0%
	GATACTTGAGCTGCAAATAA+AGG	+	8694:1134-1153	MS.gene07450:intergenic	35.0%
	GCATACATTACACATTAGGT+TGG	-	8694:863-882	MS.gene07450:intron	35.0%
	TAGATGAAACAATTCCTGCA+TGG	-	8694:405-424	MS.gene07450:CDS	35.0%
	TGATTAACAACGTTAACGGT+TGG	+	8694:515-534	MS.gene07450:intergenic	35.0%
	TGCAGGAATTGTTTCATCTA+TGG	+	8694:405-424	MS.gene07450:intergenic	35.0%
	TGGACGAAGATAAAAAACGT+GGG	-	8694:1223-1242	MS.gene07450:CDS	35.0%
!	GAATGATTGGACTCTAGTTT+CGG	-	8694:978-997	MS.gene07450:intron	35.0%
!	TCTTGTTATCTCTGGTCATT+GGG	-	8694:478-497	MS.gene07450:CDS	35.0%
!	TTCTTGTTATCTCTGGTCAT+TGG	-	8694:477-496	MS.gene07450:CDS	35.0%
	AAAAAACGTGGGCTTGATCA+TGG	-	8694:1234-1253	MS.gene07450:CDS	40.0%
	AAAACCACCGAAATCATGGA+TGG	+	8694:546-565	MS.gene07450:intergenic	40.0%
	AAAGTTAGCAAAGAGGGTGA+AGG	-	8694:1170-1189	MS.gene07450:CDS	40.0%
	AATAAATCTTGGTTGTGCGC+TGG	-	8694:746-765	MS.gene07450:intron	40.0%
	ACTCATGTTGATGTATCCAG+AGG	-	8694:1269-1288	MS.gene07450:CDS	40.0%
	GAAACCGAAAGTTGACATAC+TGG	+	8694:1303-1322	MS.gene07450:intergenic	40.0%
	GAGATAACAAGAATGGCAGA+TGG	+	8694:470-489	MS.gene07450:intergenic	40.0%
	GATGTCAAGAATTTCCATGC+AGG	+	8694:422-441	MS.gene07450:intergenic	40.0%
	GTGGACGAAGATAAAAAACG+TGG	-	8694:1222-1241	MS.gene07450:CDS	40.0%
	GTTTCATCTATGGCTAGTGT+TGG	+	8694:395-414	MS.gene07450:intergenic	40.0%
	TAGACACCCTCATCTTTAAG+AGG	+	8694:1375-1394	MS.gene07450:intergenic	40.0%
	TAGGAAAACCACCGAAATCA+TGG	+	8694:550-569	MS.gene07450:intergenic	40.0%
	TCTGGATACATCAACATGAG+TGG	+	8694:1270-1289	MS.gene07450:intergenic	40.0%
	TGAGCTGCAAATAAAGGAAC+AGG	+	8694:1128-1147	MS.gene07450:intergenic	40.0%
	TTCACCCTCTTTGCTAACTT+TGG	+	8694:1171-1190	MS.gene07450:intergenic	40.0%
!	ATGATTTCGGTGGTTTTCCT+AGG	-	8694:549-568	MS.gene07450:CDS	40.0%
!	GTTTTCCAATCTCTCCACAA+TGG	-	8694:1071-1090	MS.gene07450:intron	40.0%
!	TCTGCCATTCTTGTTATCTC+TGG	-	8694:470-489	MS.gene07450:CDS	40.0%
!!	TTTTCCTAGGAGCATGTACA+AGG	-	8694:562-581	MS.gene07450:CDS	40.0%
	ACTAGAGTCCAATCATTCGG+TGG	+	8694:976-995	MS.gene07450:intergenic	45.0%
	ATGGACCATTGTGGAGAGAT+TGG	+	8694:1079-1098	MS.gene07450:intergenic	45.0%
	CAAACCTTGTACATGCTCCT+AGG	+	8694:569-588	MS.gene07450:intergenic	45.0%
	CATACTGGTATATCAGCCTC+TGG	+	8694:1288-1307	MS.gene07450:intergenic	45.0%
	GAAACCATCCATGATTTCGG+TGG	-	8694:539-558	MS.gene07450:CDS	45.0%
	GGCTCCAAAGTTAGCAAAGA+GGG	-	8694:1164-1183	MS.gene07450:intron	45.0%
	GTGTAGCCGATCCCATTTAA+TGG	-	8694:723-742	MS.gene07450:intron	45.0%
	TGGGCTTGATCATGGAACAT+GGG	-	8694:1242-1261	MS.gene07450:CDS	45.0%
	TTAGGCCATCTTTGCTTACC+CGG	+	8694:924-943	MS.gene07450:intergenic	45.0%
!	AAGGAACTGATCGAAGCATC+TGG	-	8694:1189-1208	MS.gene07450:CDS	45.0%
!	AGGAACTGATCGAAGCATCT+GGG	-	8694:1190-1209	MS.gene07450:CDS	45.0%
!	CATTCGGTGGAACCAAAGTT+CGG	+	8694:963-982	MS.gene07450:intergenic	45.0%
!	CTTTGGTTCCACCGAATGAT+TGG	-	8694:965-984	MS.gene07450:intron	45.0%
	AGAATGGCAGATGGTCTCTC+AGG	+	8694:461-480	MS.gene07450:intergenic	50.0%
	AGCTCAAGTATCCAGCACCA+GGG	-	8694:1142-1161	MS.gene07450:intron	50.0%
	CTGATCCGGGTAAGCAAAGA+TGG	-	8694:916-935	MS.gene07450:intron	50.0%
	GGGCTCCAAAGTTAGCAAAG+AGG	-	8694:1163-1182	MS.gene07450:intron	50.0%
	GTGGGCTTGATCATGGAACA+TGG	-	8694:1241-1260	MS.gene07450:CDS	50.0%
!!	TTTGCTAACTTTGGAGCCCC+TGG	+	8694:1162-1181	MS.gene07450:intergenic	50.0%
	CAGCTCAAGTATCCAGCACC+AGG	-	8694:1141-1160	MS.gene07450:intron	55.0%
	GCTCAAGTATCCAGCACCAG+GGG	-	8694:1143-1162	MS.gene07450:intron	55.0%
!	AGCATCTGGGTTGAGTCGAG+TGG	-	8694:1203-1222	MS.gene07450:CDS	55.0%
!!	AACTTTGGAGCCCCTGGTGC+TGG	+	8694:1156-1175	MS.gene07450:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
8694	gene	353	1395	353	ID=MS.gene07450
8694	mRNA	353	1395	353	ID=MS.gene07450.t1;Parent=MS.gene07450
8694	exon	1165	1395	1165	ID=MS.gene07450.t1.exon1;Parent=MS.gene07450.t1
8694	CDS	1165	1395	1165	ID=cds.MS.gene07450.t1;Parent=MS.gene07450.t1
8694	exon	353	604	353	ID=MS.gene07450.t1.exon2;Parent=MS.gene07450.t1
8694	CDS	353	604	353	ID=cds.MS.gene07450.t1;Parent=MS.gene07450.t1

Gene Sequence

>MS.gene07450

ATGGCATTGAAGGAAACGTTTTACATATCACATGGATCACCAACACTAGCCATAGATGAAACAATTCCTGCATGGAAATTCTTGACATCATGGAAAGAGGTGTTTCCTGAGAGACCATCTGCCATTCTTGTTATCTCTGGTCATTGGGACACTTCTGTTCCAACCGTTAACGTTGTTAATCACAATGAAACCATCCATGATTTCGGTGGTTTTCCTAGGAGCATGTACAAGGTTTGTTTCTATGTACTTTTGTAACATGTCTCATGTCAATGATTTCAATTATATTTAGACTTCATGATCACAATTTTAAATTACATCTTGAAATTTGAGCGGATAATTTATGATAGAACATTGTGATGTCGTTTGATCTGTGTAGCCGATCCCATTTAATGGAATAAATCTTGGTTGTGCGCTGGCAGAGAATCCAAATCTGTTTGAGAATCGAAAAATTAAGAAATTGTAGCAATAGATTGGATAAACAAACATTGAGGCTGTAAATTGTAATAATATGCATACATTACACATTAGGTTGGTTGAATTTCAAATTTTCTATTGAATCATAACTGATCCGGGTAAGCAAAGATGGCCTAATTGTTTAATTCAGATTCCGAACTTTGGTTCCACCGAATGATTGGACTCTAGTTTCGGTATCGATTTGTTTTTGGTTACTTAAGCTGATCCTAAGTATCAATTGAAGAGCTAATAATTCTAATTCGACGTTTTCCAATCTCTCCACAATGGTCCATTTTTGTTTTATATCTATCTGTTTAAACCTGTTCCTTTATTTGCAGCTCAAGTATCCAGCACCAGGGGCTCCAAAGTTAGCAAAGAGGGTGAAGGAACTGATCGAAGCATCTGGGTTGAGTCGAGTGGACGAAGATAAAAAACGTGGGCTTGATCATGGAACATGGGTGCCACTCATGTTGATGTATCCAGAGGCTGATATACCAGTATGTCAACTTTCGGTTTCATCAAATAGAAATGGTACTTACCATTATAACTTAGGAAAAGCAATAGCTCCTCTTAAAGATGAGGGTGTCTAA

Protein sequence

>MS.gene07450.t1

MALKETFYISHGSPTLAIDETIPAWKFLTSWKEVFPERPSAILVISGHWDTSVPTVNVVNHNETIHDFGGFPRSMYKLKYPAPGAPKLAKRVKELIEASGLSRVDEDKKRGLDHGTWVPLMLMYPEADIPVCQLSVSSNRNGTYHYNLGKAIAPLKDEGV