Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08554.t1 | AES88750.2 | 95.4 | 238 | 4 | 1 | 1 | 231 | 1125 | 1362 | 3.80E-116 | 427.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08554.t1 | F4JXF9 | 49.2 | 236 | 111 | 4 | 3 | 231 | 1127 | 1360 | 1.1e-50 | 201.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08554.t1 | G7JSK5 | 95.4 | 238 | 4 | 1 | 1 | 231 | 1125 | 1362 | 2.7e-116 | 427.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene08554 | 0.801926 | 7.15E-49 | -1.69E-46 |
| MS.gene049271 | MS.gene08554 | 0.804473 | 2.12E-49 | -1.69E-46 |
| MS.gene049343 | MS.gene08554 | 0.803459 | 3.45E-49 | -1.69E-46 |
| MS.gene049473 | MS.gene08554 | 0.812926 | 3.32E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene08554 | 0.920737 | 8.75E-88 | -1.69E-46 |
| MS.gene049825 | MS.gene08554 | 0.954923 | 9.87E-113 | -1.69E-46 |
| MS.gene049850 | MS.gene08554 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene049873 | MS.gene08554 | 0.976558 | 4.68E-142 | -1.69E-46 |
| MS.gene050201 | MS.gene08554 | 0.81059 | 1.07E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene08554 | 0.803022 | 4.25E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene08554 | 0.82777 | 1.30E-54 | -1.69E-46 |
| MS.gene050355 | MS.gene08554 | 0.80794 | 3.95E-50 | -1.69E-46 |
| MS.gene050427 | MS.gene08554 | 0.816982 | 4.18E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene08554 | 0.827644 | 1.40E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene08554 | 0.813935 | 1.99E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene08554 | 0.802862 | 4.59E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene08554 | 0.822809 | 1.94E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene08554 | 0.828869 | 7.07E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene08554 | 0.826532 | 2.58E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene08554 | 0.813775 | 2.16E-51 | -1.69E-46 |
| MS.gene051957 | MS.gene08554 | 0.810576 | 1.08E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene08554 | 0.802677 | 5.01E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene08554 | -0.814374 | 1.59E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene08554 | 0.844761 | 6.19E-59 | -1.69E-46 |
| MS.gene052582 | MS.gene08554 | 0.815438 | 9.25E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene08554 | 0.831063 | 2.06E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene08554 | 0.813421 | 2.58E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene08554 | 0.815965 | 7.05E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene08554 | 0.870811 | 1.10E-66 | -1.69E-46 |
| MS.gene053294 | MS.gene08554 | 0.834461 | 2.96E-56 | -1.69E-46 |
| MS.gene053597 | MS.gene08554 | 0.805167 | 1.52E-49 | -1.69E-46 |
| MS.gene053599 | MS.gene08554 | 0.84018 | 1.02E-57 | -1.69E-46 |
| MS.gene05364 | MS.gene08554 | 0.822991 | 1.76E-53 | -1.69E-46 |
| MS.gene05365 | MS.gene08554 | 0.802188 | 6.32E-49 | -1.69E-46 |
| MS.gene053995 | MS.gene08554 | 0.8566 | 2.88E-62 | -1.69E-46 |
| MS.gene054651 | MS.gene08554 | 0.826155 | 3.17E-54 | -1.69E-46 |
| MS.gene054967 | MS.gene08554 | 0.817284 | 3.57E-52 | -1.69E-46 |
| MS.gene055374 | MS.gene08554 | 0.807262 | 5.51E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene08554 | 0.804165 | 2.46E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene08554 | 0.82183 | 3.28E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene08554 | 0.822059 | 2.90E-53 | -1.69E-46 |
| MS.gene055555 | MS.gene08554 | 0.842195 | 3.00E-58 | -1.69E-46 |
| MS.gene055580 | MS.gene08554 | -0.8176 | 3.03E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene08554 | 0.838007 | 3.71E-57 | -1.69E-46 |
| MS.gene055808 | MS.gene08554 | 0.881587 | 2.12E-70 | -1.69E-46 |
| MS.gene056043 | MS.gene08554 | -0.801496 | 8.76E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene08554 | 0.870539 | 1.35E-66 | -1.69E-46 |
| MS.gene056215 | MS.gene08554 | 0.805648 | 1.21E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene08554 | 0.830594 | 2.69E-55 | -1.69E-46 |
| MS.gene056631 | MS.gene08554 | 0.804483 | 2.11E-49 | -1.69E-46 |
| MS.gene056642 | MS.gene08554 | 0.84196 | 3.46E-58 | -1.69E-46 |
| MS.gene057027 | MS.gene08554 | 0.815395 | 9.45E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene08554 | 0.832351 | 9.93E-56 | -1.69E-46 |
| MS.gene057414 | MS.gene08554 | 0.802877 | 4.55E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene08554 | 0.84306 | 1.77E-58 | -1.69E-46 |
| MS.gene058009 | MS.gene08554 | 0.809903 | 1.50E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene08554 | 0.83073 | 2.49E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene08554 | 0.851445 | 8.83E-61 | -1.69E-46 |
| MS.gene05950 | MS.gene08554 | 0.812984 | 3.22E-51 | -1.69E-46 |
| MS.gene05953 | MS.gene08554 | 0.835501 | 1.62E-56 | -1.69E-46 |
| MS.gene05954 | MS.gene08554 | 0.885331 | 8.91E-72 | -1.69E-46 |
| MS.gene059625 | MS.gene08554 | 0.808586 | 2.88E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene08554 | 0.81301 | 3.18E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene08554 | 0.814781 | 1.29E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene08554 | 0.802932 | 4.44E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene08554 | 0.850358 | 1.79E-60 | -1.69E-46 |
| MS.gene060521 | MS.gene08554 | 0.801688 | 8.00E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene08554 | 0.811565 | 6.57E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene08554 | 0.82859 | 8.26E-55 | -1.69E-46 |
| MS.gene061040 | MS.gene08554 | -0.821936 | 3.10E-53 | -1.69E-46 |
| MS.gene061266 | MS.gene08554 | 0.819058 | 1.42E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08554.t1 | MTR_4g061700 | 95.378 | 238 | 4 | 1 | 1 | 231 | 1125 | 1362 | 1.14e-148 | 448 |
| MS.gene08554.t1 | MTR_4g061800 | 89.076 | 238 | 19 | 1 | 1 | 231 | 1134 | 1371 | 1.18e-138 | 421 |
| MS.gene08554.t1 | MTR_5g023020 | 32.584 | 178 | 101 | 2 | 62 | 224 | 1286 | 1459 | 3.55e-28 | 112 |
| MS.gene08554.t1 | MTR_4g086290 | 33.898 | 118 | 77 | 1 | 114 | 231 | 1509 | 1625 | 3.67e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08554.t1 | AT5G60040 | 49.153 | 236 | 111 | 4 | 3 | 231 | 1127 | 1360 | 4.66e-62 | 209 |
| MS.gene08554.t1 | AT5G60040 | 47.436 | 234 | 116 | 4 | 3 | 231 | 1144 | 1375 | 4.61e-59 | 201 |
| MS.gene08554.t1 | AT4G35800 | 29.469 | 207 | 135 | 2 | 33 | 228 | 1258 | 1464 | 9.43e-28 | 111 |
| MS.gene08554.t1 | AT4G35800 | 29.469 | 207 | 135 | 2 | 33 | 228 | 1258 | 1464 | 9.43e-28 | 111 |
| MS.gene08554.t1 | AT3G57660 | 35.593 | 118 | 76 | 0 | 114 | 231 | 1537 | 1654 | 3.31e-18 | 83.6 |
| MS.gene08554.t1 | AT3G57660 | 35.593 | 118 | 76 | 0 | 114 | 231 | 1550 | 1667 | 3.44e-18 | 83.6 |
Find 49 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGCCATAACCTCTTTA+AGG | 0.113717 | 4.1:-37886322 | None:intergenic |
| TTTGCAGAATGTTAAGATTT+TGG | 0.161242 | 4.1:+37885362 | MS.gene08554:intron |
| AATTGATTCTTTCACAATAT+TGG | 0.204750 | 4.1:-37885225 | None:intergenic |
| CATTGAACTGATGCACATTC+TGG | 0.222910 | 4.1:+37886382 | MS.gene08554:CDS |
| TGAGATTATTAAGTTGAAAA+AGG | 0.235822 | 4.1:-37885434 | None:intergenic |
| TTCACTTCGGCTAGACCCTT+GGG | 0.332446 | 4.1:-37885409 | None:intergenic |
| CAATCACTCACTCCTTCAAT+TGG | 0.356642 | 4.1:-37886754 | None:intergenic |
| ATTCCAGTGCCTATATGAAT+AGG | 0.375180 | 4.1:-37886793 | None:intergenic |
| CTGATCTATGATACCATATC+TGG | 0.377324 | 4.1:-37886417 | None:intergenic |
| CAAGGGCCTTAAAGAGGTTA+TGG | 0.402001 | 4.1:+37886316 | MS.gene08554:CDS |
| ATGGCAATTGAAGGGGTTGA+TGG | 0.404455 | 4.1:+37886335 | MS.gene08554:CDS |
| TAGCAGATATGATGACTGTC+AGG | 0.404647 | 4.1:+37886498 | MS.gene08554:CDS |
| TATCTGCTAGAAGCATAATA+TGG | 0.411824 | 4.1:-37886484 | None:intergenic |
| CGATGCATCCTTGCGTGGGA+AGG | 0.413910 | 4.1:+37886726 | MS.gene08554:CDS |
| GGAATTGAGGCTGCCAGATA+TGG | 0.414804 | 4.1:+37886404 | MS.gene08554:CDS |
| TCAAACTAGGGTCAAGTCCT+TGG | 0.415181 | 4.1:+37886622 | MS.gene08554:intron |
| GTTCACTTCGGCTAGACCCT+TGG | 0.417101 | 4.1:-37885410 | None:intergenic |
| ATGGGTAAACCTATTCATAT+AGG | 0.444116 | 4.1:+37886784 | MS.gene08554:CDS |
| ATTGAACTGATGCACATTCT+GGG | 0.456174 | 4.1:+37886383 | MS.gene08554:CDS |
| AGTGAGTGATTGCATAATCA+TGG | 0.458045 | 4.1:+37886765 | MS.gene08554:CDS |
| AAAGAGGTTATGGCAATTGA+AGG | 0.469543 | 4.1:+37886326 | MS.gene08554:CDS |
| AAGACATGGAATTCAAAAGA+TGG | 0.509948 | 4.1:+37886651 | MS.gene08554:CDS |
| CATCAGCAAGGGCCTTAAAG+AGG | 0.511065 | 4.1:+37886310 | MS.gene08554:intron |
| TTCCATGTCTTGTCATTCCA+AGG | 0.514932 | 4.1:-37886639 | None:intergenic |
| AAACCTATTCATATAGGCAC+TGG | 0.516311 | 4.1:+37886790 | MS.gene08554:CDS |
| AAGAGGTTATGGCAATTGAA+GGG | 0.518619 | 4.1:+37886327 | MS.gene08554:CDS |
| TTCAATGATATGATTAGTAA+CGG | 0.524631 | 4.1:-37886366 | None:intergenic |
| GGGAAGGGTGACCCAATTGA+AGG | 0.525487 | 4.1:+37886742 | MS.gene08554:CDS |
| GCTTCCATCGGTTGTAGTGA+AGG | 0.526606 | 4.1:+37885464 | MS.gene08554:CDS |
| GGACATGGGCATAATCGAAA+AGG | 0.532534 | 4.1:+37885184 | None:intergenic |
| TGGCAATTGAAGGGGTTGAT+GGG | 0.534884 | 4.1:+37886336 | MS.gene08554:CDS |
| AGAGGTTATGGCAATTGAAG+GGG | 0.537047 | 4.1:+37886328 | MS.gene08554:CDS |
| AATCACTCACTCCTTCAATT+GGG | 0.539564 | 4.1:-37886753 | None:intergenic |
| GATGCATCCTTGCGTGGGAA+GGG | 0.543229 | 4.1:+37886727 | MS.gene08554:CDS |
| GATGCACATTCTGGGAATTG+AGG | 0.567345 | 4.1:+37886391 | MS.gene08554:CDS |
| AGACATGGAATTCAAAAGAT+GGG | 0.582691 | 4.1:+37886652 | MS.gene08554:CDS |
| GTGAGTGATTGCATAATCAT+GGG | 0.585359 | 4.1:+37886766 | MS.gene08554:CDS |
| GTCCTTGGAATGACAAGACA+TGG | 0.589188 | 4.1:+37886637 | MS.gene08554:CDS |
| TGGGTCACCCTTCCCACGCA+AGG | 0.590838 | 4.1:-37886734 | None:intergenic |
| AATACCTTCACTACAACCGA+TGG | 0.609128 | 4.1:-37885468 | None:intergenic |
| AAGCTTCAAGTGGAACCCCA+AGG | 0.610926 | 4.1:+37885393 | MS.gene08554:CDS |
| AGCTTCAAGTGGAACCCCAA+GGG | 0.615564 | 4.1:+37885394 | MS.gene08554:CDS |
| ATGGGCATAATCGAAAAGGC+AGG | 0.620316 | 4.1:+37885188 | MS.gene08554:CDS |
| TCACTTCGGCTAGACCCTTG+GGG | 0.622915 | 4.1:-37885408 | None:intergenic |
| CAGTATACAATGAAACAGCA+TGG | 0.633424 | 4.1:+37886443 | MS.gene08554:CDS |
| AGCAGATATGATGACTGTCA+GGG | 0.641689 | 4.1:+37886499 | MS.gene08554:CDS |
| AAAACTGAAGTTGAAGCCAG+AGG | 0.675074 | 4.1:+37885259 | MS.gene08554:CDS |
| TATAGGCACTGGAATGATCG+AGG | 0.686172 | 4.1:+37886801 | MS.gene08554:CDS |
| GAATGATCGAGGTCAAACAA+AGG | 0.700498 | 4.1:+37886812 | MS.gene08554:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAAACAAATGA+TGG | + | chr4.1:37885636-37885655 | MS.gene08554:CDS | 10.0% |
| !! | GTTATTTGAAAATTACTATA+AGG | + | chr4.1:37886525-37886544 | MS.gene08554:intron | 15.0% |
| !! | ATTAATGTGAAATGAAAATC+AGG | + | chr4.1:37886001-37886020 | MS.gene08554:intron | 20.0% |
| !! | CTTTCATAATATAAAGTGAT+GGG | + | chr4.1:37885940-37885959 | MS.gene08554:intron | 20.0% |
| !! | TCTTTCATAATATAAAGTGA+TGG | + | chr4.1:37885939-37885958 | MS.gene08554:intron | 20.0% |
| !! | TTATGTGATTTATCAAACTA+GGG | + | chr4.1:37886610-37886629 | MS.gene08554:intron | 20.0% |
| !! | TTCAATGATATGATTAGTAA+CGG | - | chr4.1:37886369-37886388 | None:intergenic | 20.0% |
| !! | TTCACATTAATCTGAATATA+CGG | - | chr4.1:37885992-37886011 | None:intergenic | 20.0% |
| !! | TTTATGTGATTTATCAAACT+AGG | + | chr4.1:37886609-37886628 | MS.gene08554:intron | 20.0% |
| !!! | AAAAAAGCTTTGAATATTAG+AGG | - | chr4.1:37885333-37885352 | None:intergenic | 20.0% |
| !!! | AATTGATTCTTTCACAATAT+TGG | - | chr4.1:37885228-37885247 | None:intergenic | 20.0% |
| !!! | CTTTGTATTTTATATTCAGA+TGG | + | chr4.1:37885549-37885568 | MS.gene08554:intron | 20.0% |
| !!! | GACTTGTAATTTAAACTTTT+TGG | - | chr4.1:37886551-37886570 | None:intergenic | 20.0% |
| !!! | TGAGATTATTAAGTTGAAAA+AGG | - | chr4.1:37885437-37885456 | None:intergenic | 20.0% |
| ! | AAGTACATAACAAAATACAG+AGG | - | chr4.1:37885708-37885727 | None:intergenic | 25.0% |
| ! | AGTTCTTCTTCATACATATT+TGG | - | chr4.1:37885913-37885932 | None:intergenic | 25.0% |
| ! | ATATTTATCACAAACACACA+TGG | - | chr4.1:37886574-37886593 | None:intergenic | 25.0% |
| ! | TATTTATCACAAACACACAT+GGG | - | chr4.1:37886573-37886592 | None:intergenic | 25.0% |
| !! | TTGAATATTAGAGGCATAAA+TGG | - | chr4.1:37885324-37885343 | None:intergenic | 25.0% |
| !! | TTTGCAGAATGTTAAGATTT+TGG | + | chr4.1:37885362-37885381 | MS.gene08554:intron | 25.0% |
| !!! | CATTAGTTTTTCTTGATTGA+GGG | + | chr4.1:37885783-37885802 | MS.gene08554:intron | 25.0% |
| !!! | TGTACTTTTAATTTCCACTA+TGG | + | chr4.1:37885721-37885740 | MS.gene08554:intron | 25.0% |
| AAGACATGGAATTCAAAAGA+TGG | + | chr4.1:37886651-37886670 | MS.gene08554:CDS | 30.0% | |
| AATCAGGAATATGATTAGAG+AGG | + | chr4.1:37886017-37886036 | MS.gene08554:intron | 30.0% | |
| AGACATGGAATTCAAAAGAT+GGG | + | chr4.1:37886652-37886671 | MS.gene08554:CDS | 30.0% | |
| ATAGTCCAGTAAGGTATATA+AGG | - | chr4.1:37885756-37885775 | None:intergenic | 30.0% | |
| ATGGGTAAACCTATTCATAT+AGG | + | chr4.1:37886784-37886803 | MS.gene08554:CDS | 30.0% | |
| ATTAACAAGCAGCAATATAG+TGG | - | chr4.1:37886239-37886258 | None:intergenic | 30.0% | |
| GGATATTAAAAAGCTTCAAG+TGG | + | chr4.1:37885383-37885402 | MS.gene08554:CDS | 30.0% | |
| TAAGGAAACATATACCATAG+TGG | - | chr4.1:37885738-37885757 | None:intergenic | 30.0% | |
| TGCAATAATATAGTCCAGTA+AGG | - | chr4.1:37885765-37885784 | None:intergenic | 30.0% | |
| TGTTTCCTTATATACCTTAC+TGG | + | chr4.1:37885748-37885767 | MS.gene08554:intron | 30.0% | |
| ! | AAAGAATCAATTTTGCAGAC+TGG | + | chr4.1:37885236-37885255 | MS.gene08554:CDS | 30.0% |
| ! | TATCTGCTAGAAGCATAATA+TGG | - | chr4.1:37886487-37886506 | None:intergenic | 30.0% |
| ! | TATTATTGTTGCTTCATCAC+TGG | + | chr4.1:37885869-37885888 | MS.gene08554:intron | 30.0% |
| ! | TCATAATATAAAGTGATGGG+TGG | + | chr4.1:37885943-37885962 | MS.gene08554:intron | 30.0% |
| ! | TCTCAAAAATTTGCTTCCAT+CGG | + | chr4.1:37885452-37885471 | MS.gene08554:CDS | 30.0% |
| !!! | ACTTCTTTTTTCTTCTTTGC+AGG | + | chr4.1:37885578-37885597 | MS.gene08554:intron | 30.0% |
| !!! | CTTCTTTTTTCTTCTTTGCA+GGG | + | chr4.1:37885579-37885598 | MS.gene08554:intron | 30.0% |
| !!! | GCATTAGTTTTTCTTGATTG+AGG | + | chr4.1:37885782-37885801 | MS.gene08554:intron | 30.0% |
| !!! | TCATTTTTTCTCATCAGCAA+GGG | + | chr4.1:37886299-37886318 | MS.gene08554:intron | 30.0% |
| !!! | TTCATTTTTTCTCATCAGCA+AGG | + | chr4.1:37886298-37886317 | MS.gene08554:intron | 30.0% |
| AAACCTATTCATATAGGCAC+TGG | + | chr4.1:37886790-37886809 | MS.gene08554:CDS | 35.0% | |
| AAAGAGGTTATGGCAATTGA+AGG | + | chr4.1:37886326-37886345 | MS.gene08554:CDS | 35.0% | |
| AAGAGGTTATGGCAATTGAA+GGG | + | chr4.1:37886327-37886346 | MS.gene08554:CDS | 35.0% | |
| AATCACTCACTCCTTCAATT+GGG | - | chr4.1:37886756-37886775 | None:intergenic | 35.0% | |
| AGTGAGTGATTGCATAATCA+TGG | + | chr4.1:37886765-37886784 | MS.gene08554:CDS | 35.0% | |
| ATTCCAGTGCCTATATGAAT+AGG | - | chr4.1:37886796-37886815 | None:intergenic | 35.0% | |
| ATTGAACTGATGCACATTCT+GGG | + | chr4.1:37886383-37886402 | MS.gene08554:CDS | 35.0% | |
| CAATTGCCATAACCTCTTTA+AGG | - | chr4.1:37886325-37886344 | None:intergenic | 35.0% | |
| CAGTATACAATGAAACAGCA+TGG | + | chr4.1:37886443-37886462 | MS.gene08554:CDS | 35.0% | |
| CTGATCTATGATACCATATC+TGG | - | chr4.1:37886420-37886439 | None:intergenic | 35.0% | |
| GTGAGTGATTGCATAATCAT+GGG | + | chr4.1:37886766-37886785 | MS.gene08554:CDS | 35.0% | |
| GTTGAAAAAGGAGTTCACTT+CGG | - | chr4.1:37885425-37885444 | None:intergenic | 35.0% | |
| ! | ATCTGAGAAGTACACATTAC+TGG | + | chr4.1:37885665-37885684 | MS.gene08554:intron | 35.0% |
| ! | GTTGTCTGTGTATGCTTTTA+AGG | + | chr4.1:37886147-37886166 | MS.gene08554:intron | 35.0% |
| !!! | GATACAGTGTTTGTTTTGTC+TGG | + | chr4.1:37885526-37885545 | MS.gene08554:intron | 35.0% |
| AAAACTGAAGTTGAAGCCAG+AGG | + | chr4.1:37885259-37885278 | MS.gene08554:CDS | 40.0% | |
| AATACCTTCACTACAACCGA+TGG | - | chr4.1:37885471-37885490 | None:intergenic | 40.0% | |
| AGAGGTTATGGCAATTGAAG+GGG | + | chr4.1:37886328-37886347 | MS.gene08554:CDS | 40.0% | |
| AGCACACTTCTGCATTCTTT+AGG | - | chr4.1:37885822-37885841 | None:intergenic | 40.0% | |
| AGCAGATATGATGACTGTCA+GGG | + | chr4.1:37886499-37886518 | MS.gene08554:CDS | 40.0% | |
| CAATCACTCACTCCTTCAAT+TGG | - | chr4.1:37886757-37886776 | None:intergenic | 40.0% | |
| CACACTTCTGCATTCTTTAG+GGG | - | chr4.1:37885820-37885839 | None:intergenic | 40.0% | |
| CATTGAACTGATGCACATTC+TGG | + | chr4.1:37886382-37886401 | MS.gene08554:CDS | 40.0% | |
| GAATGATCGAGGTCAAACAA+AGG | + | chr4.1:37886812-37886831 | MS.gene08554:CDS | 40.0% | |
| GCACACTTCTGCATTCTTTA+GGG | - | chr4.1:37885821-37885840 | None:intergenic | 40.0% | |
| TAGCAGATATGATGACTGTC+AGG | + | chr4.1:37886498-37886517 | MS.gene08554:CDS | 40.0% | |
| TTCCATGTCTTGTCATTCCA+AGG | - | chr4.1:37886642-37886661 | None:intergenic | 40.0% | |
| ! | GTCCCGTCATGTTTTTCTTT+GGG | - | chr4.1:37886059-37886078 | None:intergenic | 40.0% |
| ! | TGAGAAGTACACATTACTGG+CGG | + | chr4.1:37885668-37885687 | MS.gene08554:intron | 40.0% |
| ! | TGTCCCGTCATGTTTTTCTT+TGG | - | chr4.1:37886060-37886079 | None:intergenic | 40.0% |
| AAGTACACATTACTGGCGGA+AGG | + | chr4.1:37885672-37885691 | MS.gene08554:intron | 45.0% | |
| AGACGCAGGATGATATTGAC+TGG | + | chr4.1:37885843-37885862 | MS.gene08554:intron | 45.0% | |
| AGAGAGGAGATTATCCTGCT+GGG | + | chr4.1:37886033-37886052 | MS.gene08554:intron | 45.0% | |
| AGTACACATTACTGGCGGAA+GGG | + | chr4.1:37885673-37885692 | MS.gene08554:intron | 45.0% | |
| ATGGCAATTGAAGGGGTTGA+TGG | + | chr4.1:37886335-37886354 | MS.gene08554:CDS | 45.0% | |
| ATGGGCATAATCGAAAAGGC+AGG | + | chr4.1:37885188-37885207 | MS.gene08554:CDS | 45.0% | |
| CAAGATGTACTCTTCACCTC+TGG | - | chr4.1:37885278-37885297 | None:intergenic | 45.0% | |
| CAAGGGCCTTAAAGAGGTTA+TGG | + | chr4.1:37886316-37886335 | MS.gene08554:CDS | 45.0% | |
| CTGTAAGATTAAGGGGGACT+GGG | + | chr4.1:37886088-37886107 | MS.gene08554:intron | 45.0% | |
| GGCCCAAAGAAAAACATGAC+GGG | + | chr4.1:37886054-37886073 | MS.gene08554:intron | 45.0% | |
| GGGCCCAAAGAAAAACATGA+CGG | + | chr4.1:37886053-37886072 | MS.gene08554:intron | 45.0% | |
| GTCCTTGGAATGACAAGACA+TGG | + | chr4.1:37886637-37886656 | MS.gene08554:CDS | 45.0% | |
| TAGAGAGGAGATTATCCTGC+TGG | + | chr4.1:37886032-37886051 | MS.gene08554:intron | 45.0% | |
| TCAAACTAGGGTCAAGTCCT+TGG | + | chr4.1:37886622-37886641 | MS.gene08554:intron | 45.0% | |
| TGTAAGATTAAGGGGGACTG+GGG | + | chr4.1:37886089-37886108 | MS.gene08554:intron | 45.0% | |
| ! | AAAAACATGACGGGACAGTC+GGG | + | chr4.1:37886063-37886082 | MS.gene08554:intron | 45.0% |
| ! | AGTCGGGTGCTGTAAGATTA+AGG | + | chr4.1:37886079-37886098 | MS.gene08554:intron | 45.0% |
| ! | GAAAAACATGACGGGACAGT+CGG | + | chr4.1:37886062-37886081 | MS.gene08554:intron | 45.0% |
| ! | GACGCAGGATGATATTGACT+GGG | + | chr4.1:37885844-37885863 | MS.gene08554:intron | 45.0% |
| ! | GACTGGGGTTAGTGAAAACT+AGG | + | chr4.1:37886104-37886123 | MS.gene08554:intron | 45.0% |
| ! | GATGCACATTCTGGGAATTG+AGG | + | chr4.1:37886391-37886410 | MS.gene08554:CDS | 45.0% |
| ! | GTCGGGTGCTGTAAGATTAA+GGG | + | chr4.1:37886080-37886099 | MS.gene08554:intron | 45.0% |
| ! | TCGGGTGCTGTAAGATTAAG+GGG | + | chr4.1:37886081-37886100 | MS.gene08554:intron | 45.0% |
| ! | TGGCAATTGAAGGGGTTGAT+GGG | + | chr4.1:37886336-37886355 | MS.gene08554:CDS | 45.0% |
| ! | TTTTCGATGCATCCTTGCGT+GGG | + | chr4.1:37886722-37886741 | MS.gene08554:CDS | 45.0% |
| !! | TATAGGCACTGGAATGATCG+AGG | + | chr4.1:37886801-37886820 | MS.gene08554:CDS | 45.0% |
| !!! | TTTTTATTTTTTTTATTTCT+AGG | - | chr4.1:37885629-37885648 | None:intergenic | 5.0% |
| AAGCTTCAAGTGGAACCCCA+AGG | + | chr4.1:37885393-37885412 | MS.gene08554:CDS | 50.0% | |
| AGCTTCAAGTGGAACCCCAA+GGG | + | chr4.1:37885394-37885413 | MS.gene08554:CDS | 50.0% | |
| CATCAGCAAGGGCCTTAAAG+AGG | + | chr4.1:37886310-37886329 | MS.gene08554:intron | 50.0% | |
| GCTGTAAGATTAAGGGGGAC+TGG | + | chr4.1:37886087-37886106 | MS.gene08554:intron | 50.0% | |
| GGAATTGAGGCTGCCAGATA+TGG | + | chr4.1:37886404-37886423 | MS.gene08554:CDS | 50.0% | |
| TTCACTTCGGCTAGACCCTT+GGG | - | chr4.1:37885412-37885431 | None:intergenic | 50.0% | |
| ! | CGGGTGCTGTAAGATTAAGG+GGG | + | chr4.1:37886082-37886101 | MS.gene08554:intron | 50.0% |
| ! | CTTTTCGATGCATCCTTGCG+TGG | + | chr4.1:37886721-37886740 | MS.gene08554:CDS | 50.0% |
| ! | GCTTCCATCGGTTGTAGTGA+AGG | + | chr4.1:37885464-37885483 | MS.gene08554:CDS | 50.0% |
| ! | TGTTTTTCTTTGGGCCCAGC+AGG | - | chr4.1:37886050-37886069 | None:intergenic | 50.0% |
| GATGCATCCTTGCGTGGGAA+GGG | + | chr4.1:37886727-37886746 | MS.gene08554:CDS | 55.0% | |
| GGGAAGGGTGACCCAATTGA+AGG | + | chr4.1:37886742-37886761 | MS.gene08554:CDS | 55.0% | |
| GTTCACTTCGGCTAGACCCT+TGG | - | chr4.1:37885413-37885432 | None:intergenic | 55.0% | |
| TCACTTCGGCTAGACCCTTG+GGG | - | chr4.1:37885411-37885430 | None:intergenic | 55.0% | |
| ! | GCAGAAGTGTGCTTAGACGC+AGG | + | chr4.1:37885829-37885848 | MS.gene08554:intron | 55.0% |
| CGATGCATCCTTGCGTGGGA+AGG | + | chr4.1:37886726-37886745 | MS.gene08554:CDS | 60.0% | |
| TGGGTCACCCTTCCCACGCA+AGG | - | chr4.1:37886737-37886756 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 37885188 | 37886837 | 37885188 | ID=MS.gene08554 |
| chr4.1 | mRNA | 37885188 | 37886837 | 37885188 | ID=MS.gene08554.t1;Parent=MS.gene08554 |
| chr4.1 | exon | 37885188 | 37885280 | 37885188 | ID=MS.gene08554.t1.exon1;Parent=MS.gene08554.t1 |
| chr4.1 | CDS | 37885188 | 37885280 | 37885188 | ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1 |
| chr4.1 | exon | 37885369 | 37885485 | 37885369 | ID=MS.gene08554.t1.exon2;Parent=MS.gene08554.t1 |
| chr4.1 | CDS | 37885369 | 37885485 | 37885369 | ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1 |
| chr4.1 | exon | 37885600 | 37885673 | 37885600 | ID=MS.gene08554.t1.exon3;Parent=MS.gene08554.t1 |
| chr4.1 | CDS | 37885600 | 37885673 | 37885600 | ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1 |
| chr4.1 | exon | 37886316 | 37886520 | 37886316 | ID=MS.gene08554.t1.exon4;Parent=MS.gene08554.t1 |
| chr4.1 | CDS | 37886316 | 37886520 | 37886316 | ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1 |
| chr4.1 | exon | 37886631 | 37886837 | 37886631 | ID=MS.gene08554.t1.exon5;Parent=MS.gene08554.t1 |
| chr4.1 | CDS | 37886631 | 37886837 | 37886631 | ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1 |
| Gene Sequence |
| Protein sequence |
