AlfalfaGEDB | MS.gene08554

M. sativa cultivar XinJiangDaYe / MS.gene08554

KEGG: K03018
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF04998.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08554.t1	AES88750.2	95.4	238	4	1	1	231	1125	1362	3.80E-116	427.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08554.t1	F4JXF9	49.2	236	111	4	3	231	1127	1360	1.1e-50	201.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08554.t1	G7JSK5	95.4	238	4	1	1	231	1125	1362	2.7e-116	427.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049207	MS.gene08554	0.801926	7.15E-49	-1.69E-46
MS.gene049271	MS.gene08554	0.804473	2.12E-49	-1.69E-46
MS.gene049343	MS.gene08554	0.803459	3.45E-49	-1.69E-46
MS.gene049473	MS.gene08554	0.812926	3.32E-51	-1.69E-46
MS.gene049824	MS.gene08554	0.920737	8.75E-88	-1.69E-46
MS.gene049825	MS.gene08554	0.954923	9.87E-113	-1.69E-46
MS.gene049850	MS.gene08554	0.80065	1.30E-48	-1.69E-46
MS.gene049873	MS.gene08554	0.976558	4.68E-142	-1.69E-46
MS.gene050201	MS.gene08554	0.81059	1.07E-50	-1.69E-46
MS.gene050277	MS.gene08554	0.803022	4.25E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08554.t1	MTR_4g061700	95.378	238	4	1	1	231	1125	1362	1.14e-148	448
MS.gene08554.t1	MTR_4g061800	89.076	238	19	1	1	231	1134	1371	1.18e-138	421
MS.gene08554.t1	MTR_5g023020	32.584	178	101	2	62	224	1286	1459	3.55e-28	112
MS.gene08554.t1	MTR_4g086290	33.898	118	77	1	114	231	1509	1625	3.67e-18	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08554.t1	AT5G60040	49.153	236	111	4	3	231	1127	1360	4.66e-62	209
MS.gene08554.t1	AT5G60040	47.436	234	116	4	3	231	1144	1375	4.61e-59	201
MS.gene08554.t1	AT4G35800	29.469	207	135	2	33	228	1258	1464	9.43e-28	111
MS.gene08554.t1	AT4G35800	29.469	207	135	2	33	228	1258	1464	9.43e-28	111
MS.gene08554.t1	AT3G57660	35.593	118	76	0	114	231	1537	1654	3.31e-18	83.6
MS.gene08554.t1	AT3G57660	35.593	118	76	0	114	231	1550	1667	3.44e-18	83.6

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Find 49 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAAGTTGAAGCCAG+AGG	0.675074	4.1:+37885259	MS.gene08554:CDS
AAACCTATTCATATAGGCAC+TGG	0.516311	4.1:+37886790	MS.gene08554:CDS
AAAGAGGTTATGGCAATTGA+AGG	0.469543	4.1:+37886326	MS.gene08554:CDS
AAGACATGGAATTCAAAAGA+TGG	0.509948	4.1:+37886651	MS.gene08554:CDS
AAGAGGTTATGGCAATTGAA+GGG	0.518619	4.1:+37886327	MS.gene08554:CDS
AAGCTTCAAGTGGAACCCCA+AGG	0.610926	4.1:+37885393	MS.gene08554:CDS
AATACCTTCACTACAACCGA+TGG	0.609128	4.1:-37885468	None:intergenic
AATCACTCACTCCTTCAATT+GGG	0.539564	4.1:-37886753	None:intergenic
AATTGATTCTTTCACAATAT+TGG	0.204750	4.1:-37885225	None:intergenic
AGACATGGAATTCAAAAGAT+GGG	0.582691	4.1:+37886652	MS.gene08554:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGACATGGAATTCAAAAGA+TGG	+	chr4.1:37886651-37886670	MS.gene08554:CDS	30.0%
AATCAGGAATATGATTAGAG+AGG	+	chr4.1:37886017-37886036	MS.gene08554:intron	30.0%
AGACATGGAATTCAAAAGAT+GGG	+	chr4.1:37886652-37886671	MS.gene08554:CDS	30.0%
ATAGTCCAGTAAGGTATATA+AGG	-	chr4.1:37885756-37885775	None:intergenic	30.0%
ATGGGTAAACCTATTCATAT+AGG	+	chr4.1:37886784-37886803	MS.gene08554:CDS	30.0%
ATTAACAAGCAGCAATATAG+TGG	-	chr4.1:37886239-37886258	None:intergenic	30.0%
GGATATTAAAAAGCTTCAAG+TGG	+	chr4.1:37885383-37885402	MS.gene08554:CDS	30.0%
TAAGGAAACATATACCATAG+TGG	-	chr4.1:37885738-37885757	None:intergenic	30.0%
TGCAATAATATAGTCCAGTA+AGG	-	chr4.1:37885765-37885784	None:intergenic	30.0%
TGTTTCCTTATATACCTTAC+TGG	+	chr4.1:37885748-37885767	MS.gene08554:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	37885188	37886837	37885188	ID=MS.gene08554
chr4.1	mRNA	37885188	37886837	37885188	ID=MS.gene08554.t1;Parent=MS.gene08554
chr4.1	exon	37885188	37885280	37885188	ID=MS.gene08554.t1.exon1;Parent=MS.gene08554.t1
chr4.1	CDS	37885188	37885280	37885188	ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1
chr4.1	exon	37885369	37885485	37885369	ID=MS.gene08554.t1.exon2;Parent=MS.gene08554.t1
chr4.1	CDS	37885369	37885485	37885369	ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1
chr4.1	exon	37885600	37885673	37885600	ID=MS.gene08554.t1.exon3;Parent=MS.gene08554.t1
chr4.1	CDS	37885600	37885673	37885600	ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1
chr4.1	exon	37886316	37886520	37886316	ID=MS.gene08554.t1.exon4;Parent=MS.gene08554.t1
chr4.1	CDS	37886316	37886520	37886316	ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1
chr4.1	exon	37886631	37886837	37886631	ID=MS.gene08554.t1.exon5;Parent=MS.gene08554.t1
chr4.1	CDS	37886631	37886837	37886631	ID=cds.MS.gene08554.t1;Parent=MS.gene08554.t1

Gene Sequence

>MS.gene08554

ATGGGCATAATCGAAAAGGCAGGACTGAATATAGATGCCAATATTGTGAAAGAATCAATTTTGCAGACTGGAAAACTGAAGTTGAAGCCAGAGGTGAAGAGTACATCTTGTAATTATGAATTTCTATTCTATTCCATTTATGCCTCTAATATTCAAAGCTTTTTTTATTTTATTTTTGCAGAATGTTAAGATTTTGGATATTAAAAAGCTTCAAGTGGAACCCCAAGGGTCTAGCCGAAGTGAACTCCTTTTTCAACTTAATAATCTCAAAAATTTGCTTCCATCGGTTGTAGTGAAGGTATTTGTGTGTGTGTGTGTGTGTGTCTTTCTTGATAGTTGATACAGTGTTTGTTTTGTCTGGCTTTGTATTTTATATTCAGATGGAAAAACACTTCTTTTTTCTTCTTTGCAGGGAGTTAAAACTGTCGAACGAACTGTCCTAGAAATAAAAAAAATAAAAACAAATGATGGTAAAGAATCTGAGAAGTACACATTACTGGCGGAAGGGCTAGTTCATCCTCTGTATTTTGTTATGTACTTTTAATTTCCACTATGGTATATGTTTCCTTATATACCTTACTGGACTATATTATTGCATTAGTTTTTCTTGATTGAGGGAATGAGTGTTGCCCCTAAAGAATGCAGAAGTGTGCTTAGACGCAGGATGATATTGACTGGGAATATTATTGTTGCTTCATCACTGGTTCTGCTTAAGCTTTCAACCAAATATGTATGAAGAAGAACTTCATTTTCTTTCATAATATAAAGTGATGGGTGGAAAATAGAAGTGTAACAAAATCACCGTATATTCAGATTAATGTGAAATGAAAATCAGGAATATGATTAGAGAGGAGATTATCCTGCTGGGCCCAAAGAAAAACATGACGGGACAGTCGGGTGCTGTAAGATTAAGGGGGACTGGGGTTAGTGAAAACTAGGTCGACTTCTAATTTTATGTTGTTGTCTGTGTATGCTTTTAAGGAAAAGCAGTGAAAAAAATAAAGTAAACTATTGTCATGCTGAAGTAATATCTTGCTTTCACAGCATTCCACTATATTGCTGCTTGTTAATTGTCAAAATCATTAAACGTCAGTTTCTAATCTGCATGTATTCATTTTTTCTCATCAGCAAGGGCCTTAAAGAGGTTATGGCAATTGAAGGGGTTGATGGGCATAAAACCGTTACTAATCATATCATTGAACTGATGCACATTCTGGGAATTGAGGCTGCCAGATATGGTATCATAGATCAGATACAGTATACAATGAAACAGCATGGAATGAGCATAGACGTACGCCATATTATGCTTCTAGCAGATATGATGACTGTCAGGGTGAGTTATTTGAAAATTACTATAAGGCCAAAAAGTTTAAATTACAAGTCCCATGTGTGTTTGTGATAAATATGTAGATTTCTACTCATTTATGTGATTTATCAAACTAGGGTCAAGTCCTTGGAATGACAAGACATGGAATTCAAAAGATGGGCAGAAGTGCATTAATGCTTGCATCATTTGAGAGTTCAACAGACTATCTTTTCGATGCATCCTTGCGTGGGAAGGGTGACCCAATTGAAGGAGTGAGTGATTGCATAATCATGGGTAAACCTATTCATATAGGCACTGGAATGATCGAGGTCAAACAAAGGTGA

Protein sequence

>MS.gene08554.t1

MGIIEKAGLNIDANIVKESILQTGKLKLKPENVKILDIKKLQVEPQGSSRSELLFQLNNLKNLLPSVVVKGVKTVERTVLEIKKIKTNDGKESENKGLKEVMAIEGVDGHKTVTNHIIELMHILGIEAARYGIIDQIQYTMKQHGMSIDVRHIMLLADMMTVRGQVLGMTRHGIQKMGRSALMLASFESSTDYLFDASLRGKGDPIEGVSDCIIMGKPIHIGTGMIEVKQR