Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22943.t1 | XP_013450381.1 | 98.3 | 874 | 15 | 0 | 1 | 874 | 10 | 883 | 0.00E+00 | 1701 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22943.t1 | P0DKG8 | 68.7 | 878 | 267 | 7 | 1 | 874 | 10 | 883 | 0.0e+00 | 1189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22943.t1 | A0A072U3V9 | 98.3 | 874 | 15 | 0 | 1 | 874 | 10 | 883 | 0.0e+00 | 1701.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene22943 | 0.809804 | 1.58E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene22943 | 0.814254 | 1.69E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene22943 | 0.806278 | 8.89E-50 | -1.69E-46 |
| MS.gene050404 | MS.gene22943 | 0.828259 | 9.93E-55 | -1.69E-46 |
| MS.gene050406 | MS.gene22943 | 0.830084 | 3.58E-55 | -1.69E-46 |
| MS.gene050426 | MS.gene22943 | -0.81203 | 5.20E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene22943 | 0.835048 | 2.11E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene22943 | 0.811668 | 6.24E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene22943 | 0.885428 | 8.20E-72 | -1.69E-46 |
| MS.gene051171 | MS.gene22943 | 0.879042 | 1.72E-69 | -1.69E-46 |
| MS.gene051208 | MS.gene22943 | 0.839149 | 1.88E-57 | -1.69E-46 |
| MS.gene051240 | MS.gene22943 | 0.809198 | 2.13E-50 | -1.69E-46 |
| MS.gene051242 | MS.gene22943 | 0.873667 | 1.23E-67 | -1.69E-46 |
| MS.gene051244 | MS.gene22943 | 0.873808 | 1.10E-67 | -1.69E-46 |
| MS.gene051525 | MS.gene22943 | 0.821065 | 4.92E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene22943 | 0.856387 | 3.33E-62 | -1.69E-46 |
| MS.gene052011 | MS.gene22943 | -0.804108 | 2.53E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene22943 | 0.802805 | 4.71E-49 | -1.69E-46 |
| MS.gene052134 | MS.gene22943 | 0.835911 | 1.27E-56 | -1.69E-46 |
| MS.gene052135 | MS.gene22943 | 0.826359 | 2.83E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene22943 | 0.826452 | 2.69E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene22943 | 0.805182 | 1.51E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene22943 | 0.843928 | 1.04E-58 | -1.69E-46 |
| MS.gene052340 | MS.gene22943 | 0.837305 | 5.62E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene22943 | 0.833016 | 6.79E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene22943 | 0.807843 | 4.15E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene22943 | 0.800237 | 1.58E-48 | -1.69E-46 |
| MS.gene052505 | MS.gene22943 | 0.813419 | 2.58E-51 | -1.69E-46 |
| MS.gene053107 | MS.gene22943 | 0.80304 | 4.21E-49 | -1.69E-46 |
| MS.gene053330 | MS.gene22943 | 0.899915 | 1.23E-77 | -1.69E-46 |
| MS.gene053907 | MS.gene22943 | 0.813586 | 2.38E-51 | -1.69E-46 |
| MS.gene053971 | MS.gene22943 | 0.856769 | 2.57E-62 | -1.69E-46 |
| MS.gene054102 | MS.gene22943 | 0.834653 | 2.65E-56 | -1.69E-46 |
| MS.gene054110 | MS.gene22943 | 0.833049 | 6.67E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene22943 | 0.801242 | 9.88E-49 | -1.69E-46 |
| MS.gene054719 | MS.gene22943 | 0.85284 | 3.54E-61 | -1.69E-46 |
| MS.gene054884 | MS.gene22943 | -0.801649 | 8.15E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene22943 | 0.802358 | 5.83E-49 | -1.69E-46 |
| MS.gene055370 | MS.gene22943 | 0.892995 | 9.48E-75 | -1.69E-46 |
| MS.gene055428 | MS.gene22943 | 0.825677 | 4.11E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene22943 | 0.841596 | 4.32E-58 | -1.69E-46 |
| MS.gene05553 | MS.gene22943 | 0.86426 | 1.38E-64 | -1.69E-46 |
| MS.gene056305 | MS.gene22943 | 0.819344 | 1.22E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene22943 | 0.805111 | 1.56E-49 | -1.69E-46 |
| MS.gene056351 | MS.gene22943 | 0.812056 | 5.14E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene22943 | 0.805687 | 1.18E-49 | -1.69E-46 |
| MS.gene056451 | MS.gene22943 | 0.82202 | 2.96E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene22943 | 0.812409 | 4.30E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene22943 | 0.884366 | 2.04E-71 | -1.69E-46 |
| MS.gene056659 | MS.gene22943 | 0.816676 | 4.89E-52 | -1.69E-46 |
| MS.gene056664 | MS.gene22943 | 0.891963 | 2.46E-74 | -1.69E-46 |
| MS.gene056796 | MS.gene22943 | 0.834684 | 2.60E-56 | -1.69E-46 |
| MS.gene05702 | MS.gene22943 | 0.827294 | 1.69E-54 | -1.69E-46 |
| MS.gene057196 | MS.gene22943 | 0.854411 | 1.25E-61 | -1.69E-46 |
| MS.gene057332 | MS.gene22943 | 0.826805 | 2.22E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene22943 | 0.823405 | 1.41E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene22943 | 0.820122 | 8.11E-53 | -1.69E-46 |
| MS.gene057825 | MS.gene22943 | 0.802451 | 5.58E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene22943 | 0.833887 | 4.12E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene22943 | 0.802638 | 5.10E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene22943 | 0.840869 | 6.71E-58 | -1.69E-46 |
| MS.gene058233 | MS.gene22943 | 0.884653 | 1.60E-71 | -1.69E-46 |
| MS.gene058276 | MS.gene22943 | 0.864626 | 1.06E-64 | -1.69E-46 |
| MS.gene058365 | MS.gene22943 | 0.815344 | 9.70E-52 | -1.69E-46 |
| MS.gene058444 | MS.gene22943 | 0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene058743 | MS.gene22943 | 0.825881 | 3.68E-54 | -1.69E-46 |
| MS.gene058746 | MS.gene22943 | 0.903783 | 2.43E-79 | -1.69E-46 |
| MS.gene059011 | MS.gene22943 | 0.810979 | 8.81E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene22943 | 0.815482 | 9.04E-52 | -1.69E-46 |
| MS.gene059141 | MS.gene22943 | 0.821273 | 4.41E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene22943 | 0.800142 | 1.66E-48 | -1.69E-46 |
| MS.gene059420 | MS.gene22943 | 0.801038 | 1.09E-48 | -1.69E-46 |
| MS.gene059512 | MS.gene22943 | 0.82361 | 1.26E-53 | -1.69E-46 |
| MS.gene059597 | MS.gene22943 | 0.811393 | 7.16E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene22943 | 0.807221 | 5.62E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene22943 | 0.809497 | 1.84E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene22943 | 0.818758 | 1.66E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene22943 | 0.819638 | 1.05E-52 | -1.69E-46 |
| MS.gene059869 | MS.gene22943 | -0.818888 | 1.55E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene22943 | 0.831972 | 1.23E-55 | -1.69E-46 |
| MS.gene060403 | MS.gene22943 | 0.806536 | 7.84E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene22943 | 0.907386 | 5.36E-81 | -1.69E-46 |
| MS.gene061049 | MS.gene22943 | 0.824667 | 7.13E-54 | -1.69E-46 |
| MS.gene061231 | MS.gene22943 | 0.815248 | 1.02E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAGGACTTCTTTATATTT+TGG | 0.117821 | 7.3:+5749560 | None:intergenic |
| TGAAGGAAATTTAGAAAATT+TGG | 0.135903 | 7.3:-5748922 | MS.gene22943:intron |
| GGACCTTCGGCAAATGTTTC+TGG | 0.140517 | 7.3:-5754856 | MS.gene22943:CDS |
| GCAGATTTGCTATCATGTTC+TGG | 0.190657 | 7.3:-5752181 | MS.gene22943:intron |
| CAAAGCAAACCTGTGCAATT+TGG | 0.221140 | 7.3:+5752455 | None:intergenic |
| CACTGTTACAAGAGATCTTC+TGG | 0.241677 | 7.3:-5751353 | MS.gene22943:CDS |
| GAGAGGATAGAGGAGGAATT+TGG | 0.243763 | 7.3:-5755100 | MS.gene22943:CDS |
| TGGACTAACTCCAGTTCTTT+AGG | 0.245830 | 7.3:+5755522 | None:intergenic |
| AGATCAAATACCGGGTGTTT+TGG | 0.268009 | 7.3:-5748776 | MS.gene22943:CDS |
| CCAGTAGCTCCAAACATAAA+AGG | 0.272058 | 7.3:-5749781 | MS.gene22943:CDS |
| TATATGATACACACTGAAAT+TGG | 0.278187 | 7.3:-5751117 | MS.gene22943:CDS |
| TTCACCTTTGCATAATCTTC+AGG | 0.279113 | 7.3:+5753019 | None:intergenic |
| GCTTGGGATGTATCAAATTA+AGG | 0.281559 | 7.3:-5753278 | MS.gene22943:intron |
| CTCCTTTGGCAAAGTTGCTT+GGG | 0.299059 | 7.3:-5753294 | MS.gene22943:CDS |
| CTGTGTGTAAAGAGCCTTAC+AGG | 0.317355 | 7.3:-5752706 | MS.gene22943:intron |
| GTTGAGGTTGCACGGATTCT+TGG | 0.319585 | 7.3:-5755305 | MS.gene22943:CDS |
| CTTTCTCATGTTCTTTGAAT+AGG | 0.319692 | 7.3:+5752981 | None:intergenic |
| CAGATTTGCTATCATGTTCT+GGG | 0.322566 | 7.3:-5752180 | MS.gene22943:CDS |
| TACATACAGATCTAGGAATA+GGG | 0.332916 | 7.3:+5752136 | None:intergenic |
| GCCTCATGGCACAATATAGA+AGG | 0.336893 | 7.3:-5749506 | MS.gene22943:CDS |
| ATTACAGGTATTTGCTCCTT+TGG | 0.341930 | 7.3:-5753308 | MS.gene22943:CDS |
| GCTCCTTTGGCAAAGTTGCT+TGG | 0.345703 | 7.3:-5753295 | MS.gene22943:CDS |
| ATACATACAGATCTAGGAAT+AGG | 0.350804 | 7.3:+5752135 | None:intergenic |
| ATTGTTAACTTGAATCATAT+TGG | 0.354666 | 7.3:+5749583 | None:intergenic |
| AGTGGGAGAGAATTCGTTAC+TGG | 0.356793 | 7.3:-5751689 | MS.gene22943:CDS |
| AGCTTACCGTAAAAGCATTA+TGG | 0.356855 | 7.3:+5755502 | None:intergenic |
| CATTTGTCCAGGAACTTGAT+TGG | 0.368685 | 7.3:-5755183 | MS.gene22943:intron |
| CAAAGCCGTGCGTTGGGGTT+GGG | 0.369858 | 7.3:-5752321 | MS.gene22943:CDS |
| TGTACCTCCCACAAACTTCC+AGG | 0.375552 | 7.3:+5755694 | None:intergenic |
| ATTGCAACCCCTAAACCTAA+TGG | 0.376245 | 7.3:-5751987 | MS.gene22943:CDS |
| CATTGCAATGGAGACATTAC+AGG | 0.381847 | 7.3:-5753323 | MS.gene22943:CDS |
| TTAAACCAAAGCCGTGCGTT+GGG | 0.385297 | 7.3:-5752327 | MS.gene22943:CDS |
| TGGGGTTGATCCATGGAATC+TGG | 0.390644 | 7.3:-5752161 | MS.gene22943:CDS |
| GGTCTAAGAATTGATCATCT+TGG | 0.398616 | 7.3:+5752756 | None:intergenic |
| ACACTTCACGAGGGATTCTC+TGG | 0.400032 | 7.3:-5755802 | MS.gene22943:CDS |
| TATGTTCAGGCTTGAAATAC+AGG | 0.403830 | 7.3:-5751919 | MS.gene22943:intron |
| GTAGATTAGAACAGAAGAAA+TGG | 0.405177 | 7.3:-5751747 | MS.gene22943:intron |
| CCAACCCCAACGCACGGCTT+TGG | 0.406391 | 7.3:+5752322 | None:intergenic |
| ATGGCAGTTGTCTTGTTCTT+CGG | 0.412219 | 7.3:-5755749 | MS.gene22943:CDS |
| CATGAGCTCTAGGGAATTTG+TGG | 0.417115 | 7.3:-5751377 | MS.gene22943:CDS |
| ACATATGCCTCCACATAAAC+AGG | 0.418695 | 7.3:-5754646 | MS.gene22943:intron |
| GTGTGAATGTATGCAATTCT+TGG | 0.422183 | 7.3:-5756427 | MS.gene22943:CDS |
| ACCAGCTGTGGACTGCATAA+AGG | 0.423090 | 7.3:+5752298 | None:intergenic |
| AACGACCAGGCTGAGGTTGA+TGG | 0.426492 | 7.3:-5748978 | MS.gene22943:intron |
| CGTGTGCGTGGAAAGCTCCT+AGG | 0.427647 | 7.3:-5756364 | MS.gene22943:CDS |
| GGCATTGCAGCTCACTATAG+TGG | 0.428991 | 7.3:-5751707 | MS.gene22943:CDS |
| ATTTGTCCAGGAACTTGATT+GGG | 0.429628 | 7.3:-5755182 | MS.gene22943:intron |
| TGTGACGCCAAGTGCTTTGT+CGG | 0.430385 | 7.3:+5755822 | None:intergenic |
| CTAGATTTGCATCTAGAGAA+TGG | 0.434783 | 7.3:-5755768 | MS.gene22943:CDS |
| CAGTAGCTCCAAACATAAAA+GGG | 0.435513 | 7.3:-5749780 | MS.gene22943:CDS |
| GTATCTTCCTCCTAAAGAAC+TGG | 0.435659 | 7.3:-5755532 | MS.gene22943:CDS |
| AGAATCCGTGCAACCTCAAC+CGG | 0.436241 | 7.3:+5755308 | None:intergenic |
| TCCCAACTAGGTGTCAAAGC+TGG | 0.436553 | 7.3:-5754931 | MS.gene22943:intron |
| AACAATTATTTCAGGCATGA+TGG | 0.437402 | 7.3:-5749168 | MS.gene22943:intron |
| GATTGGGAGTCAATTGCTGC+TGG | 0.437948 | 7.3:-5755166 | MS.gene22943:CDS |
| AAAGCTCCTAGGGTTCTTAC+CGG | 0.438758 | 7.3:-5756353 | MS.gene22943:CDS |
| TTGCAACCCCTAAACCTAAT+GGG | 0.442273 | 7.3:-5751986 | MS.gene22943:CDS |
| TCCTGCCAGGTTTAGAAAGT+TGG | 0.448380 | 7.3:-5749544 | MS.gene22943:CDS |
| AACAAAATACATACAGATCT+AGG | 0.449095 | 7.3:+5752129 | None:intergenic |
| GCCTTTATGCAGTCCACAGC+TGG | 0.449575 | 7.3:-5752299 | MS.gene22943:intron |
| TCTTGGAGAGGGGATGGAAA+TGG | 0.451251 | 7.3:-5756410 | MS.gene22943:CDS |
| CCAAAGCCGTGCGTTGGGGT+TGG | 0.452445 | 7.3:-5752322 | MS.gene22943:CDS |
| GAGAGAATTCGTTACTGGCT+TGG | 0.454991 | 7.3:-5751684 | MS.gene22943:CDS |
| CTTCATCATTCATCCGGTTG+AGG | 0.455435 | 7.3:-5755321 | MS.gene22943:CDS |
| GTTATGTTATTTCAAGTTGA+AGG | 0.457526 | 7.3:-5748939 | MS.gene22943:CDS |
| GCTGAGGTTGATGGCGGAAG+GGG | 0.457562 | 7.3:-5748969 | MS.gene22943:CDS |
| ATGTAAATTTGAAGGGCAAA+GGG | 0.462707 | 7.3:-5749634 | MS.gene22943:CDS |
| ATGGAAATTACCTGTTTATG+TGG | 0.465464 | 7.3:+5754636 | None:intergenic |
| CCCAACTAGGTGTCAAAGCT+GGG | 0.468219 | 7.3:-5754930 | MS.gene22943:intron |
| ATGGAATCACAGTGCTATGA+AGG | 0.470768 | 7.3:+5751955 | None:intergenic |
| ATGTGAAAGCAGAGGACCTT+CGG | 0.473982 | 7.3:-5754869 | MS.gene22943:CDS |
| AGGCTGAGGTTGATGGCGGA+AGG | 0.474494 | 7.3:-5748971 | MS.gene22943:CDS |
| TCTAATTGCATCAGGACCTT+AGG | 0.478487 | 7.3:-5755566 | MS.gene22943:intron |
| AGACCTTATGACAGTTAAAA+CGG | 0.479370 | 7.3:-5752738 | MS.gene22943:CDS |
| ATCCACTGTTACCTCTCCAC+TGG | 0.480367 | 7.3:+5751306 | None:intergenic |
| CGTGCATCATGTAAATTTGA+AGG | 0.483447 | 7.3:-5749642 | MS.gene22943:CDS |
| TTGTTGGCAACATGAGCTCT+AGG | 0.486743 | 7.3:-5751387 | MS.gene22943:CDS |
| ACTGTCCTTCAGAGTAAGAA+TGG | 0.489568 | 7.3:-5749707 | MS.gene22943:CDS |
| GATCAGGAAGCTTACCTCTT+CGG | 0.489957 | 7.3:+5749447 | None:intergenic |
| CTCTAGAGTAGATCAAATAC+CGG | 0.491186 | 7.3:-5748785 | MS.gene22943:CDS |
| CAAAGGGGACATGATGCTGC+AGG | 0.497067 | 7.3:-5749618 | MS.gene22943:CDS |
| GCTTGGACACCCAAGGTCAA+TGG | 0.497685 | 7.3:-5749680 | MS.gene22943:CDS |
| GGCTGAGGTTGATGGCGGAA+GGG | 0.499777 | 7.3:-5748970 | MS.gene22943:CDS |
| GAATTCGTTACTGGCTTGGT+TGG | 0.500544 | 7.3:-5751680 | MS.gene22943:CDS |
| CTTGAATCATATTGGAGACA+TGG | 0.502218 | 7.3:+5749591 | None:intergenic |
| CATGTTCTGGGGTTGATCCA+TGG | 0.504046 | 7.3:-5752168 | MS.gene22943:CDS |
| ACTTTCTCAGTGATTCTGAC+GGG | 0.507221 | 7.3:-5749835 | MS.gene22943:CDS |
| CTCAACCGGATGAATGATGA+AGG | 0.509670 | 7.3:+5755322 | None:intergenic |
| CGAACCCTTCATCATTCATC+CGG | 0.509821 | 7.3:-5755327 | MS.gene22943:CDS |
| GAGTGGCAAGAAGAGTTTGT+TGG | 0.510210 | 7.3:-5751403 | MS.gene22943:CDS |
| AGAGTAAGAATGGAAGTGCT+TGG | 0.510899 | 7.3:-5749697 | MS.gene22943:CDS |
| GGTTGATGGCGGAAGGGGAA+TGG | 0.511538 | 7.3:-5748964 | MS.gene22943:CDS |
| TTCATCCGGTTGAGGTTGCA+CGG | 0.513436 | 7.3:-5755313 | MS.gene22943:CDS |
| GGCTGAGGTCGCTACAGCAT+TGG | 0.515456 | 7.3:-5749147 | MS.gene22943:CDS |
| TTATCGTCAAATTAGCAGAC+AGG | 0.517261 | 7.3:-5754692 | MS.gene22943:CDS |
| ATTAAACCAAAGCCGTGCGT+TGG | 0.519871 | 7.3:-5752328 | MS.gene22943:CDS |
| TGCAATTCTTGGAGAGGGGA+TGG | 0.519916 | 7.3:-5756416 | MS.gene22943:CDS |
| TGAGATTAACCAAATTGCAC+AGG | 0.524101 | 7.3:-5752464 | MS.gene22943:intron |
| TCATATTCCGACAAAGCACT+TGG | 0.525417 | 7.3:-5755829 | MS.gene22943:CDS |
| AAATATAAAGAAGTCCTGCC+AGG | 0.526449 | 7.3:-5749557 | MS.gene22943:CDS |
| GATGGTCTACTGGCTGTAGT+TGG | 0.526752 | 7.3:-5748753 | MS.gene22943:CDS |
| CATTGTGGAAGGAGAGACTA+AGG | 0.527478 | 7.3:-5755062 | MS.gene22943:intron |
| GTGTGCGTGGAAAGCTCCTA+GGG | 0.527742 | 7.3:-5756363 | MS.gene22943:CDS |
| GCATTTGCAAGCACTCGTGC+AGG | 0.528305 | 7.3:+5750942 | None:intergenic |
| CTGTAGTTGGCCAAGCCTGA+TGG | 0.529497 | 7.3:-5748740 | MS.gene22943:CDS |
| CAACAAGATGGTAGCTGCAA+AGG | 0.530841 | 7.3:-5751094 | MS.gene22943:intron |
| GTTTCGTGGATTAACCTGTA+AGG | 0.534166 | 7.3:+5752692 | None:intergenic |
| CATGTAAATTTGAAGGGCAA+AGG | 0.535165 | 7.3:-5749635 | MS.gene22943:CDS |
| CTCATGTTCTTTGAATAGGT+CGG | 0.536108 | 7.3:+5752985 | None:intergenic |
| GAATAGGGGTCCAGATTCCA+TGG | 0.537999 | 7.3:+5752151 | None:intergenic |
| TGCATACAACAGATAACCAT+TGG | 0.538972 | 7.3:+5749474 | None:intergenic |
| GCCAACTTTCTAAACCTGGC+AGG | 0.545096 | 7.3:+5749543 | None:intergenic |
| TGCAAGACACAAAATAATGA+AGG | 0.547606 | 7.3:-5750034 | MS.gene22943:intron |
| GCTTGCCAACTTTCTAAACC+TGG | 0.549616 | 7.3:+5749539 | None:intergenic |
| TATTTCAGGCATGATGGCTG+AGG | 0.552186 | 7.3:-5749162 | MS.gene22943:intron |
| AGAAAGCCGGTAAGAACCCT+AGG | 0.552414 | 7.3:+5756347 | None:intergenic |
| GATACGAGATCACGGGCCTA+AGG | 0.552517 | 7.3:+5755550 | None:intergenic |
| ACTGTTACAAGAGATCTTCT+GGG | 0.552683 | 7.3:-5751352 | MS.gene22943:CDS |
| CACTTCCATTCTTACTCTGA+AGG | 0.552893 | 7.3:+5749702 | None:intergenic |
| TACAACAGATAACCATTGGA+TGG | 0.554913 | 7.3:+5749478 | None:intergenic |
| GCGTACTCTGAGTGCAATGT+TGG | 0.561487 | 7.3:+5751601 | None:intergenic |
| AGCTGTGCTTGCAAGAAAGC+CGG | 0.562369 | 7.3:+5756334 | None:intergenic |
| CACTGAAATTGGCAACAAGA+TGG | 0.562829 | 7.3:-5751106 | MS.gene22943:CDS |
| TTTGTACCCATTAGGTTTAG+GGG | 0.564612 | 7.3:+5751980 | None:intergenic |
| ACTTCCAGGGGAAAACTCGC+TGG | 0.564635 | 7.3:+5755708 | None:intergenic |
| AATGGATTTGATAGCTGAGA+GGG | 0.567318 | 7.3:-5751729 | MS.gene22943:CDS |
| GGGTAAGTGGTTACCAGCTG+TGG | 0.569013 | 7.3:+5752286 | None:intergenic |
| GACTTTCTCAGTGATTCTGA+CGG | 0.576627 | 7.3:-5749836 | MS.gene22943:CDS |
| TGCTGGATTACTTCATGACA+CGG | 0.579642 | 7.3:-5755149 | MS.gene22943:CDS |
| GAAATTACCTGTTTATGTGG+AGG | 0.581208 | 7.3:+5754639 | None:intergenic |
| TAAACCAAAGCCGTGCGTTG+GGG | 0.582851 | 7.3:-5752326 | MS.gene22943:CDS |
| ATGTATGCAATTCTTGGAGA+GGG | 0.584331 | 7.3:-5756421 | MS.gene22943:CDS |
| TGTTGGCAACATGAGCTCTA+GGG | 0.586013 | 7.3:-5751386 | MS.gene22943:CDS |
| GTCTTTGTATTTACACCCAG+TGG | 0.587156 | 7.3:-5751322 | MS.gene22943:CDS |
| ACTCACCACACAAGAACATA+CGG | 0.588943 | 7.3:+5749109 | None:intergenic |
| TTCCCCTGGAAGTTTGTGGG+AGG | 0.589656 | 7.3:-5755698 | MS.gene22943:intron |
| GCTTGCAAATGCAGAAGTTG+TGG | 0.591891 | 7.3:-5750931 | MS.gene22943:CDS |
| TGTACAGAATAGCATTGCAA+TGG | 0.595760 | 7.3:-5753335 | MS.gene22943:intron |
| GCATTGCAGCTCACTATAGT+GGG | 0.596921 | 7.3:-5751706 | MS.gene22943:CDS |
| AAAGGCCCAACCCCAACGCA+CGG | 0.597406 | 7.3:+5752316 | None:intergenic |
| GTACCTCCCACAAACTTCCA+GGG | 0.597986 | 7.3:+5755695 | None:intergenic |
| TTAGGTTTAATGCAGGTCAA+CGG | 0.603196 | 7.3:-5750978 | MS.gene22943:intron |
| ACATACAGATCTAGGAATAG+GGG | 0.604280 | 7.3:+5752137 | None:intergenic |
| AAGCCCATAAAATTGCCTCA+TGG | 0.605242 | 7.3:-5749520 | MS.gene22943:CDS |
| GGAGGAAGATACGAGATCAC+GGG | 0.606559 | 7.3:+5755543 | None:intergenic |
| TAGAAGGGCATTCCATCCAA+TGG | 0.607450 | 7.3:-5749490 | MS.gene22943:CDS |
| AGGAGGAAGATACGAGATCA+CGG | 0.607622 | 7.3:+5755542 | None:intergenic |
| GTGCATCATGTAAATTTGAA+GGG | 0.610778 | 7.3:-5749641 | MS.gene22943:CDS |
| TGGAAGTGCTTGGACACCCA+AGG | 0.611288 | 7.3:-5749687 | MS.gene22943:CDS |
| CCTCATGGCACAATATAGAA+GGG | 0.612331 | 7.3:-5749505 | MS.gene22943:CDS |
| TAGATTAAGAATCTTCCTCA+AGG | 0.612482 | 7.3:-5751162 | MS.gene22943:CDS |
| AATGTTTCTGGCTATGACAG+AGG | 0.612713 | 7.3:-5754844 | MS.gene22943:CDS |
| TGTATTTACACCCAGTGGAG+AGG | 0.615293 | 7.3:-5751317 | MS.gene22943:intron |
| ACTAACTCCAGTTCTTTAGG+AGG | 0.618244 | 7.3:+5755525 | None:intergenic |
| ATCCCAAGCAACTTTGCCAA+AGG | 0.618298 | 7.3:+5753292 | None:intergenic |
| AAAGGGGACATGATGCTGCA+GGG | 0.620819 | 7.3:-5749617 | MS.gene22943:CDS |
| AAACTCGCTGGCAACGTCCG+AGG | 0.623661 | 7.3:+5755720 | None:intergenic |
| GAAAATATTATTGAACGGTG+TGG | 0.624304 | 7.3:-5749756 | MS.gene22943:CDS |
| TCCACTGTTACCTCTCCACT+GGG | 0.626056 | 7.3:+5751307 | None:intergenic |
| GGCTCAATGCTATTAGAGAG+TGG | 0.627954 | 7.3:-5751420 | MS.gene22943:CDS |
| AGATTTGCTATCATGTTCTG+GGG | 0.632012 | 7.3:-5752179 | MS.gene22943:CDS |
| GTAATCATCTATCGTGTGCG+TGG | 0.634781 | 7.3:-5756376 | MS.gene22943:CDS |
| ACAGTGCGTCACATTGTGGA+AGG | 0.639089 | 7.3:-5755073 | MS.gene22943:CDS |
| TTCTGTAGTGATATCAGCAG+CGG | 0.640815 | 7.3:+5749868 | None:intergenic |
| TGCTACAGTGCGTCACATTG+TGG | 0.642347 | 7.3:-5755077 | MS.gene22943:CDS |
| CTTTCTCAGTGATTCTGACG+GGG | 0.642676 | 7.3:-5749834 | MS.gene22943:CDS |
| TGTAAATTTGAAGGGCAAAG+GGG | 0.645718 | 7.3:-5749633 | MS.gene22943:CDS |
| ACATACGGCTATGTCTGAAG+TGG | 0.647289 | 7.3:+5749124 | None:intergenic |
| AAATCCTGAAGATTATGCAA+AGG | 0.647444 | 7.3:-5753023 | MS.gene22943:CDS |
| AGTAGCTCCAAACATAAAAG+GGG | 0.650201 | 7.3:-5749779 | MS.gene22943:CDS |
| CCCTTCTATATTGTGCCATG+AGG | 0.650407 | 7.3:+5749505 | None:intergenic |
| TCTAGCATTCAAGAACGCCA+TGG | 0.653651 | 7.3:+5748713 | None:intergenic |
| TCAATCACAGTAGCACCTTG+AGG | 0.657313 | 7.3:+5751147 | None:intergenic |
| TCTAGAGTAGATCAAATACC+GGG | 0.659498 | 7.3:-5748784 | MS.gene22943:CDS |
| GTTGTATGCATAGACCGAAG+AGG | 0.660812 | 7.3:-5749461 | MS.gene22943:intron |
| TAGCCAGAAACATTTGCCGA+AGG | 0.661863 | 7.3:+5754853 | None:intergenic |
| GACCAGGCTGAGGTTGATGG+CGG | 0.663709 | 7.3:-5748975 | MS.gene22943:intron |
| ACTTGGCGTCACACTTCACG+AGG | 0.666144 | 7.3:-5755812 | MS.gene22943:CDS |
| GTAGACCATCCCAAAACACC+CGG | 0.672266 | 7.3:+5748766 | None:intergenic |
| TGTTCAAGATGTGAAAGCAG+AGG | 0.675037 | 7.3:-5754877 | MS.gene22943:CDS |
| TACCTCCCACAAACTTCCAG+GGG | 0.676489 | 7.3:+5755696 | None:intergenic |
| GTTTCTGGCTATGACAGAGG+AGG | 0.682217 | 7.3:-5754841 | MS.gene22943:intron |
| CATAGCCGTATGTTCTTGTG+TGG | 0.682854 | 7.3:-5749114 | MS.gene22943:intron |
| AAATGGATTTGATAGCTGAG+AGG | 0.682911 | 7.3:-5751730 | MS.gene22943:CDS |
| CCAACTAGGTGTCAAAGCTG+GGG | 0.684172 | 7.3:-5754929 | MS.gene22943:intron |
| CCAAGCCTGATGGAAAACCA+TGG | 0.686242 | 7.3:-5748730 | MS.gene22943:CDS |
| TCAACCGGATGAATGATGAA+GGG | 0.689425 | 7.3:+5755323 | None:intergenic |
| GTAGCTCCAAACATAAAAGG+GGG | 0.697648 | 7.3:-5749778 | MS.gene22943:CDS |
| GTTGGAAGTGCAGTGCCCAG+TGG | 0.700189 | 7.3:-5751662 | MS.gene22943:CDS |
| GGTTGCAACATGCTAAAACA+CGG | 0.702738 | 7.3:-5750059 | MS.gene22943:CDS |
| AATGTATGCAATTCTTGGAG+AGG | 0.707152 | 7.3:-5756422 | MS.gene22943:CDS |
| TTGGCATTTAAAGCTCACGA+TGG | 0.719107 | 7.3:-5755368 | MS.gene22943:CDS |
| CTTGGCGTCACACTTCACGA+GGG | 0.722443 | 7.3:-5755811 | MS.gene22943:CDS |
| ATGGATTTGATAGCTGAGAG+GGG | 0.725531 | 7.3:-5751728 | MS.gene22943:CDS |
| TGTATGCAATTCTTGGAGAG+GGG | 0.729175 | 7.3:-5756420 | MS.gene22943:CDS |
| GATGGTCAGAAAAGACGCAG+CGG | 0.742743 | 7.3:-5755350 | MS.gene22943:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 5748714 | 5756461 | 5748714 | ID=MS.gene22943 |
| chr7.3 | mRNA | 5748714 | 5756461 | 5748714 | ID=MS.gene22943.t1;Parent=MS.gene22943 |
| chr7.3 | exon | 5756274 | 5756461 | 5756274 | ID=MS.gene22943.t1.exon1;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5756274 | 5756461 | 5756274 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5755699 | 5755878 | 5755699 | ID=MS.gene22943.t1.exon2;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5755699 | 5755878 | 5755699 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5755509 | 5755574 | 5755509 | ID=MS.gene22943.t1.exon3;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5755509 | 5755574 | 5755509 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5755298 | 5755390 | 5755298 | ID=MS.gene22943.t1.exon4;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5755298 | 5755390 | 5755298 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5755063 | 5755194 | 5755063 | ID=MS.gene22943.t1.exon5;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5755063 | 5755194 | 5755063 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5754842 | 5754943 | 5754842 | ID=MS.gene22943.t1.exon6;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5754842 | 5754943 | 5754842 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5754647 | 5754724 | 5754647 | ID=MS.gene22943.t1.exon7;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5754647 | 5754724 | 5754647 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5753279 | 5753350 | 5753279 | ID=MS.gene22943.t1.exon8;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5753279 | 5753350 | 5753279 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5752970 | 5753077 | 5752970 | ID=MS.gene22943.t1.exon9;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5752970 | 5753077 | 5752970 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5752707 | 5752804 | 5752707 | ID=MS.gene22943.t1.exon10;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5752707 | 5752804 | 5752707 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5752465 | 5752525 | 5752465 | ID=MS.gene22943.t1.exon11;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5752465 | 5752525 | 5752465 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5752300 | 5752362 | 5752300 | ID=MS.gene22943.t1.exon12;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5752300 | 5752362 | 5752300 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5752143 | 5752199 | 5752143 | ID=MS.gene22943.t1.exon13;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5752143 | 5752199 | 5752143 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5751920 | 5752021 | 5751920 | ID=MS.gene22943.t1.exon14;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5751920 | 5752021 | 5751920 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5751607 | 5751765 | 5751607 | ID=MS.gene22943.t1.exon15;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5751607 | 5751765 | 5751607 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5751318 | 5751449 | 5751318 | ID=MS.gene22943.t1.exon16;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5751318 | 5751449 | 5751318 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5751095 | 5751181 | 5751095 | ID=MS.gene22943.t1.exon17;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5751095 | 5751181 | 5751095 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5750914 | 5750985 | 5750914 | ID=MS.gene22943.t1.exon18;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5750914 | 5750985 | 5750914 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5750035 | 5750121 | 5750035 | ID=MS.gene22943.t1.exon19;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5750035 | 5750121 | 5750035 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5749462 | 5749915 | 5749462 | ID=MS.gene22943.t1.exon20;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5749462 | 5749915 | 5749462 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5749115 | 5749176 | 5749115 | ID=MS.gene22943.t1.exon21;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5749115 | 5749176 | 5749115 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5748923 | 5748991 | 5748923 | ID=MS.gene22943.t1.exon22;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5748923 | 5748991 | 5748923 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| chr7.3 | exon | 5748714 | 5748818 | 5748714 | ID=MS.gene22943.t1.exon23;Parent=MS.gene22943.t1 |
| chr7.3 | CDS | 5748714 | 5748818 | 5748714 | ID=cds.MS.gene22943.t1;Parent=MS.gene22943.t1 |
| Gene Sequence |
| Protein sequence |
