Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23422.t1 | XP_004493832.1 | 57.3 | 185 | 49 | 2 | 1 | 155 | 1 | 185 | 8.40E-43 | 183.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23422.t1 | Q8S1Z1 | 43.0 | 207 | 61 | 4 | 1 | 150 | 1 | 207 | 5.7e-32 | 138.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23422.t1 | A0A1S2XSG9 | 57.3 | 185 | 49 | 2 | 1 | 155 | 1 | 185 | 6.0e-43 | 183.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene23422 | 0.830992 | 2.15E-55 | -1.69E-46 |
| MS.gene049272 | MS.gene23422 | 0.818703 | 1.71E-52 | -1.69E-46 |
| MS.gene049343 | MS.gene23422 | 0.813014 | 3.17E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene23422 | 0.816809 | 4.57E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene23422 | 0.818697 | 1.71E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene23422 | 0.819158 | 1.34E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene23422 | 0.842068 | 3.24E-58 | -1.69E-46 |
| MS.gene050156 | MS.gene23422 | 0.815867 | 7.42E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene23422 | 0.813508 | 2.47E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene23422 | 0.837894 | 3.97E-57 | -1.69E-46 |
| MS.gene050759 | MS.gene23422 | 0.826842 | 2.17E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene23422 | 0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene050962 | MS.gene23422 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene23422 | 0.801145 | 1.03E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene23422 | 0.806399 | 8.38E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene23422 | 0.814545 | 1.46E-51 | -1.69E-46 |
| MS.gene051957 | MS.gene23422 | 0.802317 | 5.94E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene23422 | 0.824138 | 9.49E-54 | -1.69E-46 |
| MS.gene052190 | MS.gene23422 | 0.805106 | 1.57E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene23422 | 0.817705 | 2.87E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene23422 | 0.919994 | 2.24E-87 | -1.69E-46 |
| MS.gene052519 | MS.gene23422 | 0.831057 | 2.07E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene23422 | 0.828964 | 6.71E-55 | -1.69E-46 |
| MS.gene052584 | MS.gene23422 | 0.831976 | 1.23E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene23422 | 0.807486 | 4.94E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene23422 | 0.801531 | 8.62E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene23422 | 0.810151 | 1.33E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene23422 | 0.812229 | 4.71E-51 | -1.69E-46 |
| MS.gene053054 | MS.gene23422 | -0.802872 | 4.57E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene23422 | 0.803225 | 3.86E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene23422 | 0.843318 | 1.51E-58 | -1.69E-46 |
| MS.gene053966 | MS.gene23422 | 0.800989 | 1.11E-48 | -1.69E-46 |
| MS.gene054291 | MS.gene23422 | -0.834324 | 3.20E-56 | -1.69E-46 |
| MS.gene054467 | MS.gene23422 | 0.801245 | 9.86E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene23422 | 0.815502 | 8.94E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene23422 | 0.829254 | 5.70E-55 | -1.69E-46 |
| MS.gene054657 | MS.gene23422 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene23422 | 0.820274 | 7.48E-53 | -1.69E-46 |
| MS.gene055166 | MS.gene23422 | 0.819697 | 1.01E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene23422 | 0.806667 | 7.36E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene23422 | 0.807474 | 4.97E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene23422 | 0.840491 | 8.42E-58 | -1.69E-46 |
| MS.gene056050 | MS.gene23422 | 0.802509 | 5.42E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene23422 | 0.837232 | 5.87E-57 | -1.69E-46 |
| MS.gene056174 | MS.gene23422 | 0.803261 | 3.79E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene23422 | 0.816542 | 5.24E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene23422 | 0.805178 | 1.51E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene23422 | 0.806495 | 8.00E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene23422 | 0.803085 | 4.12E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene23422 | 0.823714 | 1.19E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene23422 | 0.814347 | 1.61E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene23422 | 0.838584 | 2.64E-57 | -1.69E-46 |
| MS.gene058829 | MS.gene23422 | 0.82721 | 1.77E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene23422 | 0.807509 | 4.88E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene23422 | 0.812208 | 4.76E-51 | -1.69E-46 |
| MS.gene05979 | MS.gene23422 | 0.804115 | 2.52E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene23422 | 0.807363 | 5.24E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene23422 | 0.815419 | 9.34E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene23422 | 0.811127 | 8.18E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene23422 | 0.802623 | 5.14E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene23422 | 0.808688 | 2.74E-50 | -1.69E-46 |
| MS.gene060690 | MS.gene23422 | 0.827681 | 1.37E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene23422 | 0.807839 | 4.16E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene23422 | 0.832365 | 9.85E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23422.t1 | MTR_4g094380 | 41.063 | 207 | 65 | 3 | 1 | 150 | 1 | 207 | 3.97e-42 | 140 |
| MS.gene23422.t1 | MTR_4g094380 | 50.360 | 139 | 40 | 2 | 1 | 110 | 1 | 139 | 1.30e-38 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23422.t1 | AT3G60360 | 41.262 | 206 | 65 | 4 | 1 | 150 | 1 | 206 | 3.83e-40 | 135 |
Find 21 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGATTCAGTCTGAGAAAA+AGG | 0.320386 | 7.2:+12750834 | MS.gene23422:CDS |
| ATCTTAAAGTAAAATTCATC+TGG | 0.330226 | 7.2:-12750718 | None:intergenic |
| AATATACCTGAGTCTCTTCC+TGG | 0.342208 | 7.2:-12752378 | None:intergenic |
| AGGGTTTCACGGAAACGATT+TGG | 0.362984 | 7.2:+12750495 | MS.gene23422:intron |
| ATTAGAGCTAGACTTGTTGA+TGG | 0.367637 | 7.2:+12750742 | MS.gene23422:CDS |
| GCTTGTCTGTCAGACACTTA+AGG | 0.375501 | 7.2:+12750675 | MS.gene23422:intron |
| CAGACTGAATCTCTTGAAGA+AGG | 0.417743 | 7.2:-12750825 | None:intergenic |
| GTCTACGGATGATGTTTCTC+AGG | 0.432159 | 7.2:-12750358 | None:intergenic |
| GCACAAAGACTATCTCCTTC+GGG | 0.434793 | 7.2:+12750530 | MS.gene23422:CDS |
| AGCACAAAGACTATCTCCTT+CGG | 0.447683 | 7.2:+12750529 | MS.gene23422:CDS |
| TCGTAACTATTAGGGTTTCA+CGG | 0.494684 | 7.2:+12750484 | MS.gene23422:intron |
| TCTTAAAGTAAAATTCATCT+GGG | 0.525519 | 7.2:-12750717 | None:intergenic |
| AAGAAAGCAAGAGTAGACTC+AGG | 0.549205 | 7.2:+12752323 | MS.gene23422:CDS |
| TGTGATAAGCTTTAGCCCGA+AGG | 0.563386 | 7.2:-12750545 | None:intergenic |
| CTATAACGATTACACAATCC+AGG | 0.565748 | 7.2:+12752360 | MS.gene23422:CDS |
| CACAATCCAGGAAGAGACTC+AGG | 0.567026 | 7.2:+12752372 | MS.gene23422:CDS |
| AGACTGAATCTCTTGAAGAA+GGG | 0.587041 | 7.2:-12750824 | None:intergenic |
| AATAGCATGAGAATTCAGTT+CGG | 0.612076 | 7.2:-12750986 | None:intergenic |
| AGAAAGCAAGAGTAGACTCA+GGG | 0.625238 | 7.2:+12752324 | MS.gene23422:CDS |
| GCTCTTTGTAAGTACGTCTA+CGG | 0.634635 | 7.2:-12750373 | None:intergenic |
| TCTACGGATGATGTTTCTCA+GGG | 0.657071 | 7.2:-12750357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAAAAAAAAATATGCT+AGG | + | chr7.2:12751282-12751301 | MS.gene23422:intron | 15.0% |
| !! | AAAAAAATATGCTAGGAATA+TGG | + | chr7.2:12751289-12751308 | MS.gene23422:intron | 20.0% |
| !! | AAAAAATATGCTAGGAATAT+GGG | + | chr7.2:12751290-12751309 | MS.gene23422:intron | 20.0% |
| !! | ACCACAAAAATTAATCAAAA+TGG | - | chr7.2:12752172-12752191 | None:intergenic | 20.0% |
| !! | ATAAATGTAGAGTAGATAAA+TGG | - | chr7.2:12751672-12751691 | None:intergenic | 20.0% |
| !! | ATACGAAATAAAACTTCAAT+AGG | - | chr7.2:12752041-12752060 | None:intergenic | 20.0% |
| !! | ATCATGTTTCCTTATTAAAA+CGG | + | chr7.2:12751735-12751754 | MS.gene23422:intron | 20.0% |
| !! | ATCTTAAAGTAAAATTCATC+TGG | - | chr7.2:12750721-12750740 | None:intergenic | 20.0% |
| !! | TCTTAAAGTAAAATTCATCT+GGG | - | chr7.2:12750720-12750739 | None:intergenic | 20.0% |
| !! | TTATGGATCTAACTAAAATT+AGG | + | chr7.2:12751542-12751561 | MS.gene23422:intron | 20.0% |
| !! | TTTCTTGAACAAATAAAATG+CGG | + | chr7.2:12751256-12751275 | MS.gene23422:intron | 20.0% |
| !!! | AACAAATTTTCAAAAGTTGA+TGG | - | chr7.2:12751229-12751248 | None:intergenic | 20.0% |
| !!! | GAACATGAGTTTTATTTTAT+GGG | + | chr7.2:12751468-12751487 | MS.gene23422:intron | 20.0% |
| !!! | GCTACTAGTTTTATAATATA+CGG | + | chr7.2:12752146-12752165 | MS.gene23422:intron | 20.0% |
| !!! | TCATCTTATTCTATTTTATG+TGG | - | chr7.2:12751978-12751997 | None:intergenic | 20.0% |
| !!! | TGAACATGAGTTTTATTTTA+TGG | + | chr7.2:12751467-12751486 | MS.gene23422:intron | 20.0% |
| ! | ATAGATAAATGGAATAAAGC+CGG | + | chr7.2:12751814-12751833 | MS.gene23422:intron | 25.0% |
| ! | CATAAATGGAAAGTAAATGT+AGG | + | chr7.2:12751791-12751810 | MS.gene23422:intron | 25.0% |
| ! | CTTAGTTGTCAATACAATAA+TGG | - | chr7.2:12751411-12751430 | None:intergenic | 25.0% |
| ! | GAAATAAAACTTCAATAGGA+TGG | - | chr7.2:12752037-12752056 | None:intergenic | 25.0% |
| ! | GAATATATGATATTGGATCA+GGG | - | chr7.2:12751370-12751389 | None:intergenic | 25.0% |
| ! | GTAAATGTAGGATAGATAAA+TGG | + | chr7.2:12751803-12751822 | MS.gene23422:intron | 25.0% |
| ! | TACATGCGAATATATGATAT+TGG | - | chr7.2:12751377-12751396 | None:intergenic | 25.0% |
| ! | TCAAGTCTTAATGTTAACAA+AGG | - | chr7.2:12751176-12751195 | None:intergenic | 25.0% |
| ! | TCATGTTTCCTTATTAAAAC+GGG | + | chr7.2:12751736-12751755 | MS.gene23422:intron | 25.0% |
| ! | TTCATGCTTAGTTTCAAATT+TGG | + | chr7.2:12750602-12750621 | MS.gene23422:intron | 25.0% |
| ! | TTTCATCTATGAACAGAATA+AGG | + | chr7.2:12752473-12752492 | MS.gene23422:intron | 25.0% |
| !! | TAACATGCATGTTTTATGAA+TGG | + | chr7.2:12751574-12751593 | MS.gene23422:intron | 25.0% |
| !!! | ATCAATAATTTTAGCCCATA+TGG | + | chr7.2:12752069-12752088 | MS.gene23422:intron | 25.0% |
| !!! | GAAGTTTTATTTCGTATAAG+CGG | + | chr7.2:12752044-12752063 | MS.gene23422:intron | 25.0% |
| !!! | GCCATTTTGATTAATTTTTG+TGG | + | chr7.2:12752168-12752187 | MS.gene23422:intron | 25.0% |
| !!! | GTTTGTTTTCGTAACTATTA+GGG | + | chr7.2:12750476-12750495 | MS.gene23422:intron | 25.0% |
| !!! | TTCTCATGCTATTTTCTATA+CGG | + | chr7.2:12750996-12751015 | MS.gene23422:CDS | 25.0% |
| AAAACTTCAATAGGATGGAT+AGG | - | chr7.2:12752032-12752051 | None:intergenic | 30.0% | |
| AATAGCATGAGAATTCAGTT+CGG | - | chr7.2:12750989-12751008 | None:intergenic | 30.0% | |
| ACAAACGAAATTGAAGCATA+TGG | - | chr7.2:12750462-12750481 | None:intergenic | 30.0% | |
| ATCACTCAAACATGTTCATA+AGG | - | chr7.2:12752416-12752435 | None:intergenic | 30.0% | |
| ATGTATTGAGTTACTATCCA+AGG | - | chr7.2:12751623-12751642 | None:intergenic | 30.0% | |
| CATTCACAAGTAAGCAAATT+TGG | - | chr7.2:12750926-12750945 | None:intergenic | 30.0% | |
| CGAATATATGATATTGGATC+AGG | - | chr7.2:12751371-12751390 | None:intergenic | 30.0% | |
| GAAGAGAAAGAGAAGAAAAA+AGG | + | chr7.2:12752091-12752110 | MS.gene23422:intron | 30.0% | |
| TAAAGCTTATCACAAAAAGC+AGG | + | chr7.2:12750554-12750573 | MS.gene23422:CDS | 30.0% | |
| TAGTAACTCAATACATGTGT+TGG | + | chr7.2:12751627-12751646 | MS.gene23422:intron | 30.0% | |
| TGACTGATAACAATTATGGT+TGG | + | chr7.2:12752116-12752135 | MS.gene23422:intron | 30.0% | |
| TGTATTGAGTTACTATCCAA+GGG | - | chr7.2:12751622-12751641 | None:intergenic | 30.0% | |
| TTGTGTCTATCTCTCATAAA+TGG | + | chr7.2:12751777-12751796 | MS.gene23422:intron | 30.0% | |
| ! | TTTTCAGTTTTCTGCAAGAA+GGG | - | chr7.2:12750958-12750977 | None:intergenic | 30.0% |
| !! | AAACATGCATGTTATTTCCT+CGG | - | chr7.2:12751568-12751587 | None:intergenic | 30.0% |
| !! | ATGATAGATTTTGTTGTGTC+TGG | + | chr7.2:12751994-12752013 | MS.gene23422:intron | 30.0% |
| !! | CGTTTGTTTTCGTAACTATT+AGG | + | chr7.2:12750475-12750494 | MS.gene23422:intron | 30.0% |
| !! | TAGTAAGACCCGTTTTAATA+AGG | - | chr7.2:12751747-12751766 | None:intergenic | 30.0% |
| !!! | ATGCTATTTTCTATACGGAA+AGG | + | chr7.2:12751001-12751020 | MS.gene23422:CDS | 30.0% |
| !!! | CATGAGTTTTATTTTATGGG+AGG | + | chr7.2:12751471-12751490 | MS.gene23422:intron | 30.0% |
| AAAGAGAACTAGTTACGGTT+GGG | - | chr7.2:12750402-12750421 | None:intergenic | 35.0% | |
| AAAGCCGGAAAGTAAATGTT+GGG | + | chr7.2:12751829-12751848 | MS.gene23422:intron | 35.0% | |
| AAATCAACTCATGCTTGTTC+TGG | - | chr7.2:12751039-12751058 | None:intergenic | 35.0% | |
| AACGAAATTGAAGCATATGG+AGG | - | chr7.2:12750459-12750478 | None:intergenic | 35.0% | |
| ACAAAAAGCAGGACACTTTA+CGG | + | chr7.2:12750565-12750584 | MS.gene23422:CDS | 35.0% | |
| AGACACAAGTGAAAGATTAG+TGG | + | chr7.2:12751701-12751720 | MS.gene23422:intron | 35.0% | |
| AGACTGAATCTCTTGAAGAA+GGG | - | chr7.2:12750827-12750846 | None:intergenic | 35.0% | |
| AGAGATTCAGTCTGAGAAAA+AGG | + | chr7.2:12750834-12750853 | MS.gene23422:CDS | 35.0% | |
| ATCTAACTAAAATTAGGCCG+AGG | + | chr7.2:12751548-12751567 | MS.gene23422:intron | 35.0% | |
| CATAACTCTACCAAAACATG+GGG | - | chr7.2:12751527-12751546 | None:intergenic | 35.0% | |
| CCATAACTCTACCAAAACAT+GGG | - | chr7.2:12751528-12751547 | None:intergenic | 35.0% | |
| CTATAACGATTACACAATCC+AGG | + | chr7.2:12752360-12752379 | MS.gene23422:CDS | 35.0% | |
| CTTACTTGTGAATGTCTTGT+TGG | + | chr7.2:12750932-12750951 | MS.gene23422:intron | 35.0% | |
| CTTCTCTTTCTCTTCCATAT+GGG | - | chr7.2:12752086-12752105 | None:intergenic | 35.0% | |
| GAGAACAATCTATCATTCTG+TGG | - | chr7.2:12752291-12752310 | None:intergenic | 35.0% | |
| GAGAGAAAGAGAACTAGTTA+CGG | - | chr7.2:12750407-12750426 | None:intergenic | 35.0% | |
| GGAGTGACTGATAACAATTA+TGG | + | chr7.2:12752112-12752131 | MS.gene23422:intron | 35.0% | |
| TAAAGCCGGAAAGTAAATGT+TGG | + | chr7.2:12751828-12751847 | MS.gene23422:intron | 35.0% | |
| TATCCTGACATTCAACATCA+CGG | + | chr7.2:12750778-12750797 | MS.gene23422:intron | 35.0% | |
| TCCATAACTCTACCAAAACA+TGG | - | chr7.2:12751529-12751548 | None:intergenic | 35.0% | |
| TCGTAACTATTAGGGTTTCA+CGG | + | chr7.2:12750484-12750503 | MS.gene23422:intron | 35.0% | |
| TCTTCTCTTTCTCTTCCATA+TGG | - | chr7.2:12752087-12752106 | None:intergenic | 35.0% | |
| TTGACAACTAAGATAGCATC+TGG | + | chr7.2:12751419-12751438 | MS.gene23422:intron | 35.0% | |
| TTGTTCAATGAAAGCTGACT+TGG | + | chr7.2:12752212-12752231 | MS.gene23422:intron | 35.0% | |
| ! | AAGGATAAAAAGCGCAAACT+AGG | + | chr7.2:12752492-12752511 | MS.gene23422:CDS | 35.0% |
| ! | CTTTTCAGTTTTCTGCAAGA+AGG | - | chr7.2:12750959-12750978 | None:intergenic | 35.0% |
| !! | ATTAGAGCTAGACTTGTTGA+TGG | + | chr7.2:12750742-12750761 | MS.gene23422:CDS | 35.0% |
| AAGAAAGCAAGAGTAGACTC+AGG | + | chr7.2:12752323-12752342 | MS.gene23422:CDS | 40.0% | |
| AATATACCTGAGTCTCTTCC+TGG | - | chr7.2:12752381-12752400 | None:intergenic | 40.0% | |
| AATCTCTTGAAGAAGGGTTC+TGG | - | chr7.2:12750821-12750840 | None:intergenic | 40.0% | |
| AGAAAGCAAGAGTAGACTCA+GGG | + | chr7.2:12752324-12752343 | MS.gene23422:CDS | 40.0% | |
| AGCACAAAGACTATCTCCTT+CGG | + | chr7.2:12750529-12750548 | MS.gene23422:CDS | 40.0% | |
| ATCCTGACATTCAACATCAC+GGG | + | chr7.2:12750779-12750798 | MS.gene23422:intron | 40.0% | |
| CAAAAAGCAGGACACTTTAC+GGG | + | chr7.2:12750566-12750585 | MS.gene23422:CDS | 40.0% | |
| CAGACTGAATCTCTTGAAGA+AGG | - | chr7.2:12750828-12750847 | None:intergenic | 40.0% | |
| GAAAGAGAACTAGTTACGGT+TGG | - | chr7.2:12750403-12750422 | None:intergenic | 40.0% | |
| GATTACAGTCAACTGAGTCA+AGG | - | chr7.2:12751346-12751365 | None:intergenic | 40.0% | |
| GATTCAGTCTGAGAAAAAGG+TGG | + | chr7.2:12750837-12750856 | MS.gene23422:intron | 40.0% | |
| GCTCTTTGTAAGTACGTCTA+CGG | - | chr7.2:12750376-12750395 | None:intergenic | 40.0% | |
| TATGCTAGGAATATGGGTTC+AGG | + | chr7.2:12751296-12751315 | MS.gene23422:intron | 40.0% | |
| TCTACGGATGATGTTTCTCA+GGG | - | chr7.2:12750360-12750379 | None:intergenic | 40.0% | |
| ! | GACTTGGTTCATAGTGCATT+TGG | + | chr7.2:12752228-12752247 | MS.gene23422:intron | 40.0% |
| !!! | CCCATGTTTTGGTAGAGTTA+TGG | + | chr7.2:12751525-12751544 | MS.gene23422:intron | 40.0% |
| ACCAAAACATGGGGACATAC+TGG | - | chr7.2:12751518-12751537 | None:intergenic | 45.0% | |
| AGGGTTTCACGGAAACGATT+TGG | + | chr7.2:12750495-12750514 | MS.gene23422:intron | 45.0% | |
| CAGTCTGAGAAAAAGGTGGA+TGG | + | chr7.2:12750841-12750860 | MS.gene23422:intron | 45.0% | |
| GCACAAAGACTATCTCCTTC+GGG | + | chr7.2:12750530-12750549 | MS.gene23422:CDS | 45.0% | |
| GCTGCCCAACATTTACTTTC+CGG | - | chr7.2:12751836-12751855 | None:intergenic | 45.0% | |
| GCTTGTCTGTCAGACACTTA+AGG | + | chr7.2:12750675-12750694 | MS.gene23422:intron | 45.0% | |
| GTCTACGGATGATGTTTCTC+AGG | - | chr7.2:12750361-12750380 | None:intergenic | 45.0% | |
| TAAGATAGCATCTGGCAGAC+AGG | + | chr7.2:12751427-12751446 | MS.gene23422:intron | 45.0% | |
| TCAACTGAGTCAAGGCTTCA+TGG | - | chr7.2:12751338-12751357 | None:intergenic | 45.0% | |
| TCTGGCAGACAGGAAAAAGT+AGG | + | chr7.2:12751437-12751456 | MS.gene23422:intron | 45.0% | |
| TTCCCGTGATGTTGAATGTC+AGG | - | chr7.2:12750784-12750803 | None:intergenic | 45.0% | |
| ! | ACTCAATACATGTGTTGGCG+AGG | + | chr7.2:12751632-12751651 | MS.gene23422:intron | 45.0% |
| ! | TATCCAAGGGTACGCTGAAA+AGG | - | chr7.2:12751609-12751628 | None:intergenic | 45.0% |
| ! | TCCAGTATGTCCCCATGTTT+TGG | + | chr7.2:12751514-12751533 | MS.gene23422:intron | 45.0% |
| ! | TGTGATAAGCTTTAGCCCGA+AGG | - | chr7.2:12750548-12750567 | None:intergenic | 45.0% |
| CACAATCCAGGAAGAGACTC+AGG | + | chr7.2:12752372-12752391 | MS.gene23422:CDS | 50.0% | |
| ! | AGTCCTTTTCAGCGTACCCT+TGG | + | chr7.2:12751603-12751622 | MS.gene23422:intron | 50.0% |
| ! | CATGTGTTGGCGAGGAGTTC+TGG | + | chr7.2:12751640-12751659 | MS.gene23422:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 12750350 | 12752530 | 12750350 | ID=MS.gene23422 |
| chr7.2 | mRNA | 12750350 | 12752530 | 12750350 | ID=MS.gene23422.t1;Parent=MS.gene23422 |
| chr7.2 | exon | 12750350 | 12750405 | 12750350 | ID=MS.gene23422.t1.exon1;Parent=MS.gene23422.t1 |
| chr7.2 | CDS | 12750350 | 12750405 | 12750350 | ID=cds.MS.gene23422.t1;Parent=MS.gene23422.t1 |
| chr7.2 | exon | 12750497 | 12750587 | 12750497 | ID=MS.gene23422.t1.exon2;Parent=MS.gene23422.t1 |
| chr7.2 | CDS | 12750497 | 12750587 | 12750497 | ID=cds.MS.gene23422.t1;Parent=MS.gene23422.t1 |
| chr7.2 | exon | 12750688 | 12750776 | 12750688 | ID=MS.gene23422.t1.exon3;Parent=MS.gene23422.t1 |
| chr7.2 | CDS | 12750688 | 12750776 | 12750688 | ID=cds.MS.gene23422.t1;Parent=MS.gene23422.t1 |
| chr7.2 | exon | 12750822 | 12750855 | 12750822 | ID=MS.gene23422.t1.exon4;Parent=MS.gene23422.t1 |
| chr7.2 | CDS | 12750822 | 12750855 | 12750822 | ID=cds.MS.gene23422.t1;Parent=MS.gene23422.t1 |
| chr7.2 | exon | 12750967 | 12751022 | 12750967 | ID=MS.gene23422.t1.exon5;Parent=MS.gene23422.t1 |
| chr7.2 | CDS | 12750967 | 12751022 | 12750967 | ID=cds.MS.gene23422.t1;Parent=MS.gene23422.t1 |
| chr7.2 | exon | 12752294 | 12752393 | 12752294 | ID=MS.gene23422.t1.exon6;Parent=MS.gene23422.t1 |
| chr7.2 | CDS | 12752294 | 12752393 | 12752294 | ID=cds.MS.gene23422.t1;Parent=MS.gene23422.t1 |
| chr7.2 | exon | 12752489 | 12752530 | 12752489 | ID=MS.gene23422.t1.exon7;Parent=MS.gene23422.t1 |
| chr7.2 | CDS | 12752489 | 12752530 | 12752489 | ID=cds.MS.gene23422.t1;Parent=MS.gene23422.t1 |
| Gene Sequence |
| Protein sequence |
