AlfalfaGEDB | MS.gene27427

M. sativa cultivar XinJiangDaYe / MS.gene27427

KEGG: K22374
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF00248.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27427.t1	GAU40887.1	88.6	324	34	1	1	324	1	321	5.10E-167	597

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27427.t1	E7C196	61.5	322	114	2	9	323	8	326	2.5e-114	413.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27427.t1	A0A2Z6PC20	88.6	324	34	1	1	324	1	321	3.7e-167	597.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene27427	0.80895	2.41E-50	-1.69E-46
MS.gene049222	MS.gene27427	0.820619	6.23E-53	-1.69E-46
MS.gene049232	MS.gene27427	0.801705	7.94E-49	-1.69E-46
MS.gene049285	MS.gene27427	0.800983	1.12E-48	-1.69E-46
MS.gene049396	MS.gene27427	0.820127	8.08E-53	-1.69E-46
MS.gene049609	MS.gene27427	0.82704	1.95E-54	-1.69E-46
MS.gene049633	MS.gene27427	0.858746	6.67E-63	-1.69E-46
MS.gene050170	MS.gene27427	0.822735	2.02E-53	-1.69E-46
MS.gene050323	MS.gene27427	0.838878	2.21E-57	-1.69E-46
MS.gene050496	MS.gene27427	0.811971	5.36E-51	-1.69E-46
MS.gene050593	MS.gene27427	0.800978	1.12E-48	-1.69E-46
MS.gene050675	MS.gene27427	0.814178	1.76E-51	-1.69E-46
MS.gene050747	MS.gene27427	0.809589	1.76E-50	-1.69E-46
MS.gene050772	MS.gene27427	0.845685	3.48E-59	-1.69E-46
MS.gene05080	MS.gene27427	0.856274	3.59E-62	-1.69E-46
MS.gene05081	MS.gene27427	0.801571	8.46E-49	-1.69E-46
MS.gene050868	MS.gene27427	0.842223	2.95E-58	-1.69E-46
MS.gene050871	MS.gene27427	0.838848	2.25E-57	-1.69E-46
MS.gene050950	MS.gene27427	0.809157	2.17E-50	-1.69E-46
MS.gene051268	MS.gene27427	0.812424	4.27E-51	-1.69E-46
MS.gene051838	MS.gene27427	0.850887	1.27E-60	-1.69E-46
MS.gene051858	MS.gene27427	0.814859	1.24E-51	-1.69E-46
MS.gene051874	MS.gene27427	0.809476	1.86E-50	-1.69E-46
MS.gene052506	MS.gene27427	0.811898	5.56E-51	-1.69E-46
MS.gene052822	MS.gene27427	0.818571	1.83E-52	-1.69E-46
MS.gene052870	MS.gene27427	0.83895	2.12E-57	-1.69E-46
MS.gene052872	MS.gene27427	0.839926	1.18E-57	-1.69E-46
MS.gene052966	MS.gene27427	0.823459	1.37E-53	-1.69E-46
MS.gene053203	MS.gene27427	0.823011	1.74E-53	-1.69E-46
MS.gene053449	MS.gene27427	0.837363	5.43E-57	-1.69E-46
MS.gene053479	MS.gene27427	0.841056	5.99E-58	-1.69E-46
MS.gene053574	MS.gene27427	0.832671	8.28E-56	-1.69E-46
MS.gene053824	MS.gene27427	0.842161	3.06E-58	-1.69E-46
MS.gene053912	MS.gene27427	0.838673	2.50E-57	-1.69E-46
MS.gene053916	MS.gene27427	0.810867	9.31E-51	-1.69E-46
MS.gene054003	MS.gene27427	0.801281	9.70E-49	-1.69E-46
MS.gene05494	MS.gene27427	0.853753	1.94E-61	-1.69E-46
MS.gene055206	MS.gene27427	0.819667	1.03E-52	-1.69E-46
MS.gene055224	MS.gene27427	0.804911	1.72E-49	-1.69E-46
MS.gene055502	MS.gene27427	0.803196	3.91E-49	-1.69E-46
MS.gene055577	MS.gene27427	0.827334	1.66E-54	-1.69E-46
MS.gene055722	MS.gene27427	0.839161	1.87E-57	-1.69E-46
MS.gene05589	MS.gene27427	0.8177	2.88E-52	-1.69E-46
MS.gene055941	MS.gene27427	0.804256	2.36E-49	-1.69E-46
MS.gene056387	MS.gene27427	0.811985	5.32E-51	-1.69E-46
MS.gene056448	MS.gene27427	0.804139	2.49E-49	-1.69E-46
MS.gene056504	MS.gene27427	0.818596	1.81E-52	-1.69E-46
MS.gene056510	MS.gene27427	0.819947	8.89E-53	-1.69E-46
MS.gene056511	MS.gene27427	0.815102	1.10E-51	-1.69E-46
MS.gene056657	MS.gene27427	0.802892	4.52E-49	-1.69E-46
MS.gene057076	MS.gene27427	0.841336	5.05E-58	-1.69E-46
MS.gene057331	MS.gene27427	0.821871	3.21E-53	-1.69E-46
MS.gene057734	MS.gene27427	0.819706	1.01E-52	-1.69E-46
MS.gene058338	MS.gene27427	0.806541	7.83E-50	-1.69E-46
MS.gene05837	MS.gene27427	0.832278	1.04E-55	-1.69E-46
MS.gene058723	MS.gene27427	0.818302	2.10E-52	-1.69E-46
MS.gene058773	MS.gene27427	0.828502	8.68E-55	-1.69E-46
MS.gene058838	MS.gene27427	0.805662	1.20E-49	-1.69E-46
MS.gene059023	MS.gene27427	0.824801	6.63E-54	-1.69E-46
MS.gene05913	MS.gene27427	0.824083	9.78E-54	-1.69E-46
MS.gene059305	MS.gene27427	0.832213	1.07E-55	-1.69E-46
MS.gene059699	MS.gene27427	-0.807949	3.94E-50	-1.69E-46
MS.gene059703	MS.gene27427	-0.81296	3.26E-51	-1.69E-46
MS.gene059711	MS.gene27427	0.805317	1.42E-49	-1.69E-46
MS.gene059718	MS.gene27427	0.8167	4.83E-52	-1.69E-46
MS.gene059865	MS.gene27427	0.819767	9.77E-53	-1.69E-46
MS.gene059902	MS.gene27427	0.808079	3.69E-50	-1.69E-46
MS.gene060482	MS.gene27427	0.809187	2.14E-50	-1.69E-46
MS.gene060762	MS.gene27427	0.816893	4.37E-52	-1.69E-46
MS.gene060818	MS.gene27427	0.811501	6.78E-51	-1.69E-46
MS.gene060835	MS.gene27427	0.804141	2.49E-49	-1.69E-46
MS.gene060837	MS.gene27427	0.821198	4.59E-53	-1.69E-46
MS.gene060982	MS.gene27427	0.820989	5.12E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27427.t1	MTR_4g072350	80.247	324	61	1	1	324	1	321	0.0	541
MS.gene27427.t1	MTR_4g072360	75.542	323	76	1	1	323	1	320	0.0	515
MS.gene27427.t1	MTR_4g072320	76.161	323	68	3	1	323	1	314	0.0	511
MS.gene27427.t1	MTR_6g073110	58.255	321	131	1	1	321	1	318	4.68e-144	409
MS.gene27427.t1	MTR_0374s0050	50.000	326	149	3	1	323	1	315	5.06e-110	323
MS.gene27427.t1	MTR_3g083130	48.910	321	141	8	8	321	9	313	1.18e-99	296
MS.gene27427.t1	MTR_4g036845	46.729	321	161	7	5	323	2	314	1.48e-92	278
MS.gene27427.t1	MTR_5g097900	49.515	309	137	7	16	321	19	311	2.30e-89	270
MS.gene27427.t1	MTR_5g097910	51.220	287	130	5	16	300	19	297	4.00e-89	269
MS.gene27427.t1	MTR_5g097940	51.220	287	130	5	16	300	19	297	4.00e-89	269
MS.gene27427.t1	MTR_8g070095	44.828	319	160	7	11	323	10	318	1.01e-85	261
MS.gene27427.t1	MTR_6g072650	81.333	150	6	1	175	324	10	137	2.10e-83	248
MS.gene27427.t1	MTR_8g070115	42.056	321	176	5	4	323	3	314	3.31e-81	249
MS.gene27427.t1	MTR_4g021350	43.492	315	164	7	11	323	10	312	3.33e-79	244
MS.gene27427.t1	MTR_7g063580	44.268	314	164	6	11	323	50	353	4.41e-78	243
MS.gene27427.t1	MTR_4g021410	42.628	312	158	7	11	321	11	302	2.03e-72	226
MS.gene27427.t1	MTR_4g021350	44.097	288	148	6	11	297	10	285	2.63e-71	223
MS.gene27427.t1	MTR_4g021450	40.741	324	171	7	1	323	1	304	2.46e-69	218
MS.gene27427.t1	MTR_4g021410	43.571	280	140	6	43	321	3	265	2.61e-67	212
MS.gene27427.t1	MTR_7g070500	37.580	314	181	7	11	321	17	318	3.88e-66	211
MS.gene27427.t1	MTR_7g070500	37.329	292	171	5	11	302	17	296	3.27e-60	195
MS.gene27427.t1	MTR_4g072060	38.796	299	164	8	9	297	3	292	3.31e-58	190
MS.gene27427.t1	MTR_4g021410	43.388	242	120	5	81	321	1	226	3.73e-54	177
MS.gene27427.t1	MTR_4g021450	41.803	244	125	5	81	323	1	228	2.18e-51	170
MS.gene27427.t1	MTR_6g072710	63.717	113	41	0	193	305	1	113	6.92e-49	159
MS.gene27427.t1	MTR_4g021450	45.000	180	94	2	145	323	10	185	1.80e-48	160
MS.gene27427.t1	MTR_6g072705	95.652	46	2	0	110	155	40	85	2.25e-26	100
MS.gene27427.t1	MTR_3g449790	25.086	291	153	11	42	295	83	345	1.00e-11	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27427.t1	AT1G59960	51.299	308	146	2	17	323	21	325	2.96e-118	344
MS.gene27427.t1	AT1G59950	50.974	308	147	2	17	323	15	319	1.34e-108	319
MS.gene27427.t1	AT2G37790	47.771	314	153	5	11	323	10	313	2.15e-95	285
MS.gene27427.t1	AT2G37770	47.937	315	152	6	11	323	10	314	2.46e-93	280
MS.gene27427.t1	AT3G53880	45.223	314	162	5	11	323	10	314	1.35e-87	265
MS.gene27427.t1	AT5G62420	44.620	316	164	8	11	323	8	315	1.42e-86	263
MS.gene27427.t1	AT2G37760	45.541	314	157	5	11	323	10	310	1.90e-86	262
MS.gene27427.t1	AT2G37760	45.541	314	157	5	11	323	10	310	1.90e-86	262
MS.gene27427.t1	AT2G37760	45.675	289	144	4	11	299	10	285	4.78e-80	245
MS.gene27427.t1	AT2G37760	45.172	290	146	4	11	300	10	286	1.27e-79	244
MS.gene27427.t1	AT2G37760	45.172	290	146	4	11	300	10	286	1.27e-79	244
MS.gene27427.t1	AT3G53880	44.599	287	150	4	11	297	10	287	8.10e-77	238
MS.gene27427.t1	AT5G01670	39.319	323	181	8	2	321	9	319	8.53e-76	236
MS.gene27427.t1	AT2G37760	46.008	263	135	4	62	323	8	264	4.55e-71	221
MS.gene27427.t1	AT2G37760	46.008	263	135	4	62	323	8	264	4.55e-71	221
MS.gene27427.t1	AT5G01670	36.286	350	181	9	2	321	9	346	8.85e-70	221
MS.gene27427.t1	AT2G21260	39.667	300	162	8	8	297	2	292	1.86e-66	211
MS.gene27427.t1	AT2G21250	38.333	300	166	8	8	297	2	292	1.38e-64	206
MS.gene27427.t1	AT2G37770	50.000	204	91	5	11	213	10	203	3.41e-58	189
MS.gene27427.t1	AT2G21250	39.004	241	128	8	8	238	2	233	1.22e-47	160
MS.gene27427.t1	AT2G21260	36.818	220	124	6	86	295	8	222	4.16e-41	144
MS.gene27427.t1	AT5G53580	24.028	283	159	10	42	288	80	342	5.97e-11	63.2

Find 79 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGGGAGCATACAAAGTATTT+TGG	0.154726	6.2:-74629323	MS.gene27427:CDS
TGAAGCTCTCACTTCAATTT+TGG	0.164436	6.2:-74630089	MS.gene27427:CDS
TCCACAATGCAGACTTTATA+AGG	0.257806	6.2:-74628724	MS.gene27427:CDS
TTTGATACAGCTTCTATCTA+TGG	0.288397	6.2:-74630037	MS.gene27427:CDS
GCAGTTCCTAGGCCTATTAT+TGG	0.318436	6.2:+74630133	None:intergenic
GAAACTGAACCAAGAAGAAT+TGG	0.348726	6.2:-74628763	MS.gene27427:CDS
GTTGCTAACACCAATAGATT+TGG	0.348806	6.2:+74629624	None:intergenic
TCTATTGGTGTTAGCAACTT+TGG	0.367727	6.2:-74629619	MS.gene27427:CDS
TCAGCAATTTCCTGAAGAAT+AGG	0.369772	6.2:+74629276	None:intergenic
ATGGAAGATTGTTACAGATT+AGG	0.375258	6.2:-74629652	MS.gene27427:CDS
GGGGAAAAGATGCCAATAAT+AGG	0.375376	6.2:-74630145	MS.gene27427:CDS
CATTTCACCGGCAGTTAATC+AGG	0.380171	6.2:-74629560	MS.gene27427:intron
GAAGTGAGAGCTTCATTTGA+TGG	0.392979	6.2:+74630097	None:intergenic
GATGGAGAACCCTATTCTTC+AGG	0.395066	6.2:-74629286	MS.gene27427:CDS
CATGAGGTGATACTAAATTC+AGG	0.395724	6.2:-74630166	MS.gene27427:CDS
TAAAGCAACATGGAAAACTA+TGG	0.396324	6.2:-74629671	MS.gene27427:CDS
CAGCAATTTCCTGAAGAATA+GGG	0.397981	6.2:+74629277	None:intergenic
AGAACCTTGAAATATTTGAT+TGG	0.401797	6.2:-74628785	MS.gene27427:CDS
TTAGGCTTAGCCAAATCTAT+TGG	0.410561	6.2:-74629634	MS.gene27427:CDS
AGTTTCCCTTGTTGCCATGA+TGG	0.413836	6.2:+74629396	None:intergenic
CCATGTTGCTTTAATGTCAA+AGG	0.417313	6.2:+74629681	None:intergenic
GTTTCCAATCAAATATTTCA+AGG	0.435069	6.2:+74628781	None:intergenic
CTGATTAACTGCCGGTGAAA+TGG	0.442372	6.2:+74629561	None:intergenic
TCTTGCAGATAGCACTAAGA+TGG	0.451601	6.2:-74628866	MS.gene27427:intron
CATGTTGCTTTAATGTCAAA+GGG	0.458517	6.2:+74629682	None:intergenic
AAATGGACCTTACAAATCCT+TGG	0.461855	6.2:-74628682	MS.gene27427:CDS
GAGGAGTTGTAGCAGTTCCT+AGG	0.470932	6.2:+74630122	None:intergenic
TGGATCTCTACTTGATTCAC+TGG	0.472213	6.2:-74629762	MS.gene27427:CDS
AGCATCATTGCACCATAGCT+TGG	0.473444	6.2:+74629931	None:intergenic
AGCTCTTCCAAGGATTTGTA+AGG	0.476136	6.2:+74628675	None:intergenic
AGCTTCGCCTAGAGGTTCTT+CGG	0.477001	6.2:+74630012	None:intergenic
TAGAAAGAAGAGTGTAGCTC+AGG	0.477815	6.2:-74629250	MS.gene27427:intron
GTTGAAGGCTTTAACTTCAC+AGG	0.478558	6.2:-74629718	MS.gene27427:CDS
AGAGCTTCATTTGATGGAAG+AGG	0.479484	6.2:+74630103	None:intergenic
ACATCTTCTTTCAATCTCAC+TGG	0.482395	6.2:+74629739	None:intergenic
CATGGCAACAAGGGAAACTC+AGG	0.493453	6.2:-74629392	MS.gene27427:CDS
GAATCTGAGGTTGGAGTATG+TGG	0.495354	6.2:-74629782	MS.gene27427:CDS
TGTGTGTGCATGGTCACCAT+TGG	0.497595	6.2:-74629343	MS.gene27427:CDS
GTGTGTGCATGGTCACCATT+GGG	0.511118	6.2:-74629342	MS.gene27427:CDS
ATTGTTTAGGAATCTGAGGT+TGG	0.515864	6.2:-74629791	MS.gene27427:intron
ATGAGGTGATACTAAATTCA+GGG	0.518353	6.2:-74630165	MS.gene27427:CDS
CCTTTGACATTAAAGCAACA+TGG	0.518974	6.2:-74629681	MS.gene27427:CDS
AGGGAATTCTGCATGAAGAA+AGG	0.520886	6.2:-74629372	MS.gene27427:CDS
GGAAAATACAACCATTTCAC+CGG	0.523086	6.2:-74629572	MS.gene27427:CDS
AGAGAACAATGCTTGCTTGA+GGG	0.524372	6.2:+74629874	None:intergenic
AAGATGCCAATAATAGGCCT+AGG	0.525430	6.2:-74630139	MS.gene27427:CDS
CAAATCCTTGGAAGAGCTGT+GGG	0.525762	6.2:-74628670	MS.gene27427:CDS
AGATTGAAAGAAGATGTTGA+AGG	0.547100	6.2:-74629733	MS.gene27427:CDS
TCTTGTACCTGATTAACTGC+CGG	0.553919	6.2:+74629553	None:intergenic
TTGGGGTTCTAATGCTGTGA+TGG	0.554067	6.2:-74629304	MS.gene27427:CDS
CTGAATTTAGTATCACCTCA+TGG	0.555888	6.2:+74630167	None:intergenic
TCACCATGACCTTGTTCTCA+AGG	0.559342	6.2:-74629909	MS.gene27427:CDS
GTGTCAAAAGCTTTAGAGAT+CGG	0.568756	6.2:-74629989	MS.gene27427:CDS
AATGTCTGTAACCAATGTCA+AGG	0.577476	6.2:+74630059	None:intergenic
TTGGTTGATGCCCTTGACAT+TGG	0.578089	6.2:-74630070	MS.gene27427:CDS
ACCATCCCACAGCTCTTCCA+AGG	0.580081	6.2:+74628665	None:intergenic
ATGAATCCATCATGGCAACA+AGG	0.583038	6.2:-74629402	MS.gene27427:CDS
GAACAATGCTTGCTTGAGGG+TGG	0.589137	6.2:+74629877	None:intergenic
TCGAATTGTTTAGGAATCTG+AGG	0.591873	6.2:-74629795	MS.gene27427:intron
AGGTAGAAATGAATCCATCA+TGG	0.594785	6.2:-74629410	MS.gene27427:CDS
ACAAATCCTTGGAAGAGCTG+TGG	0.595019	6.2:-74628671	MS.gene27427:CDS
TGAAAAGCTTCAACAAAGAG+AGG	0.595864	6.2:-74628815	MS.gene27427:CDS
TGAATCCATCATGGCAACAA+GGG	0.596651	6.2:-74629401	MS.gene27427:CDS
TATGGTACCGAAGAACCTCT+AGG	0.597666	6.2:-74630019	MS.gene27427:CDS
GAGAGAACAATGCTTGCTTG+AGG	0.603868	6.2:+74629873	None:intergenic
ATGTCTGTAACCAATGTCAA+GGG	0.608239	6.2:+74630060	None:intergenic
GCCTTATAAAGTCTGCATTG+TGG	0.609832	6.2:+74628723	None:intergenic
AGGCTTTAACTTCACAGGTG+AGG	0.611497	6.2:-74629713	MS.gene27427:CDS
AATACTTTGTATGCTCCCAA+TGG	0.618795	6.2:+74629327	None:intergenic
AAGGAATTCATGTGTGTGCA+TGG	0.624563	6.2:-74629353	MS.gene27427:CDS
TTTGACACAGCTTCGCCTAG+AGG	0.624568	6.2:+74630004	None:intergenic
GAGCCTTGAGAACAAGGTCA+TGG	0.636860	6.2:+74629906	None:intergenic
TATTCTTCAGGAAATTGCTG+AGG	0.645519	6.2:-74629274	MS.gene27427:CDS
TGAGGTGATACTAAATTCAG+GGG	0.660799	6.2:-74630164	MS.gene27427:CDS
TCCTTGGAAGAGCTGTGGGA+TGG	0.668107	6.2:-74628666	MS.gene27427:CDS
ATGGCAACAAGGGAAACTCA+GGG	0.675053	6.2:-74629391	MS.gene27427:CDS
GGAAGGAAATAAACTCCATG+AGG	0.684740	6.2:-74630182	MS.gene27427:CDS
CTAAGATGGATACATGAGCA+AGG	0.686586	6.2:-74628852	MS.gene27427:CDS
CTAACACTAGGAAAGATGGA+AGG	0.686804	6.2:-74630199	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAATAACAAAATTAGAGA+AGG	+	chr6.2:74629022-74629041	None:intergenic	15.0%
!!!	GCTTATATATAAGTAATTTT+AGG	-	chr6.2:74629917-74629936	MS.gene27427:CDS	15.0%
!!	ACCTTAAAATGTTAGATAAA+TGG	-	chr6.2:74629687-74629706	MS.gene27427:CDS	20.0%
!!	AGTATTAACGTAATATTGAT+TGG	+	chr6.2:74629355-74629374	None:intergenic	20.0%
!!!	ATTTTTTGTTCGAATTGTTT+AGG	-	chr6.2:74629036-74629055	MS.gene27427:intron	20.0%
!!!	GAAATGTTTTTATCTGAAAA+TGG	-	chr6.2:74630141-74630160	MS.gene27427:CDS	20.0%
!	AGAACCTTGAAATATTTGAT+TGG	-	chr6.2:74630055-74630074	MS.gene27427:CDS	25.0%
!	GTTTCCAATCAAATATTTCA+AGG	+	chr6.2:74630062-74630081	None:intergenic	25.0%
!	TGTTATGAAATTCACTCAAT+TGG	-	chr6.2:74629384-74629403	MS.gene27427:CDS	25.0%
!!	ATATTGATTGGTTAATGACT+CGG	+	chr6.2:74629343-74629362	None:intergenic	25.0%
!!	GCCATTTATCTAACATTTTA+AGG	+	chr6.2:74629691-74629710	None:intergenic	25.0%
	AGATTGAAAGAAGATGTTGA+AGG	-	chr6.2:74629107-74629126	MS.gene27427:intron	30.0%
	ATGAGGTGATACTAAATTCA+GGG	-	chr6.2:74628675-74628694	MS.gene27427:CDS	30.0%
	ATGGAAGATTGTTACAGATT+AGG	-	chr6.2:74629188-74629207	MS.gene27427:intron	30.0%
	TAAAGCAACATGGAAAACTA+TGG	-	chr6.2:74629169-74629188	MS.gene27427:intron	30.0%
	TACGAACATAAATACTTGTG+AGG	-	chr6.2:74629739-74629758	MS.gene27427:CDS	30.0%
	TTTGATACAGCTTCTATCTA+TGG	-	chr6.2:74628803-74628822	MS.gene27427:CDS	30.0%
!	CAAAAAGCTTTCCTTACTTT+TGG	-	chr6.2:74629247-74629266	MS.gene27427:intron	30.0%
!	CATGTCGATTATTTGGATTT+AGG	-	chr6.2:74629410-74629429	MS.gene27427:CDS	30.0%
!	GGTTGTATTTTCCAAAAGTA+AGG	+	chr6.2:74629261-74629280	None:intergenic	30.0%
!	TGATTTTGTCCAATTCTTCT+TGG	+	chr6.2:74630089-74630108	None:intergenic	30.0%
!	TTTTCATTACTTCCAAGCTA+TGG	-	chr6.2:74628897-74628916	MS.gene27427:intron	30.0%
!!	CATGTTGCTTTAATGTCAAA+GGG	+	chr6.2:74629161-74629180	None:intergenic	30.0%
!!	CTCTCGAACTTTTTCTTTTA+AGG	-	chr6.2:74628985-74629004	MS.gene27427:intron	30.0%
!!!	CTTCATCTCGTTTTTTTATG+AGG	+	chr6.2:74628877-74628896	None:intergenic	30.0%
	AAACGACAGTAAAGAGCTTA+CGG	+	chr6.2:74629839-74629858	None:intergenic	35.0%
	AAATGGACCTTACAAATCCT+TGG	-	chr6.2:74630158-74630177	MS.gene27427:CDS	35.0%
	AATACTTTGTATGCTCCCAA+TGG	+	chr6.2:74629516-74629535	None:intergenic	35.0%
	AATGTCTGTAACCAATGTCA+AGG	+	chr6.2:74628784-74628803	None:intergenic	35.0%
	ACATCTTCTTTCAATCTCAC+TGG	+	chr6.2:74629104-74629123	None:intergenic	35.0%
	AGGTAGAAATGAATCCATCA+TGG	-	chr6.2:74629430-74629449	MS.gene27427:intron	35.0%
	ATGTCTGTAACCAATGTCAA+GGG	+	chr6.2:74628783-74628802	None:intergenic	35.0%
	ATTGGAAACAGCTAATGACA+TGG	-	chr6.2:74629789-74629808	MS.gene27427:intron	35.0%
	CAGCAATTTCCTGAAGAATA+GGG	+	chr6.2:74629566-74629585	None:intergenic	35.0%
	CATGAGGTGATACTAAATTC+AGG	-	chr6.2:74628674-74628693	MS.gene27427:CDS	35.0%
	CCTTTGACATTAAAGCAACA+TGG	-	chr6.2:74629159-74629178	MS.gene27427:intron	35.0%
	CTGAATTTAGTATCACCTCA+TGG	+	chr6.2:74628676-74628695	None:intergenic	35.0%
	CTGCACTAAGAAATCTAAAG+AGG	+	chr6.2:74629713-74629732	None:intergenic	35.0%
	GAAACTGAACCAAGAAGAAT+TGG	-	chr6.2:74630077-74630096	MS.gene27427:CDS	35.0%
	GGAAAATACAACCATTTCAC+CGG	-	chr6.2:74629268-74629287	MS.gene27427:CDS	35.0%
	GTTGCTAACACCAATAGATT+TGG	+	chr6.2:74629219-74629238	None:intergenic	35.0%
	TATTCTTCAGGAAATTGCTG+AGG	-	chr6.2:74629566-74629585	MS.gene27427:CDS	35.0%
	TCAGCAATTTCCTGAAGAAT+AGG	+	chr6.2:74629567-74629586	None:intergenic	35.0%
	TCCACAATGCAGACTTTATA+AGG	-	chr6.2:74630116-74630135	MS.gene27427:CDS	35.0%
	TCGAATTGTTTAGGAATCTG+AGG	-	chr6.2:74629045-74629064	MS.gene27427:intron	35.0%
	TGAAAAGCTTCAACAAAGAG+AGG	-	chr6.2:74630025-74630044	MS.gene27427:CDS	35.0%
	TGAGGTGATACTAAATTCAG+GGG	-	chr6.2:74628676-74628695	MS.gene27427:CDS	35.0%
	TTAGGCTTAGCCAAATCTAT+TGG	-	chr6.2:74629206-74629225	MS.gene27427:intron	35.0%
	TTATGACTTATGAGAGCTCA+TGG	-	chr6.2:74629766-74629785	MS.gene27427:CDS	35.0%
!	AGGTTTCAGAACAGTTTGTT+AGG	+	chr6.2:74629671-74629690	None:intergenic	35.0%
!	ATTGTTTAGGAATCTGAGGT+TGG	-	chr6.2:74629049-74629068	MS.gene27427:intron	35.0%
!	TAATGACTCGGACAAATACT+CGG	+	chr6.2:74629331-74629350	None:intergenic	35.0%
!	TGAAGCTCTCACTTCAATTT+TGG	-	chr6.2:74628751-74628770	MS.gene27427:CDS	35.0%
!	TTGGTTGCATGTCGATTATT+TGG	-	chr6.2:74629403-74629422	MS.gene27427:CDS	35.0%
!!	CCATGTTGCTTTAATGTCAA+AGG	+	chr6.2:74629162-74629181	None:intergenic	35.0%
!!	GGAGCATACAAAGTATTTTG+GGG	-	chr6.2:74629519-74629538	MS.gene27427:intron	35.0%
!!	GGGAGCATACAAAGTATTTT+GGG	-	chr6.2:74629518-74629537	MS.gene27427:intron	35.0%
!!	GTGTCAAAAGCTTTAGAGAT+CGG	-	chr6.2:74628851-74628870	MS.gene27427:CDS	35.0%
!!	TCTATTGGTGTTAGCAACTT+TGG	-	chr6.2:74629221-74629240	MS.gene27427:intron	35.0%
!!	TGGGAGCATACAAAGTATTT+TGG	-	chr6.2:74629517-74629536	MS.gene27427:intron	35.0%
	AAGATGCCAATAATAGGCCT+AGG	-	chr6.2:74628701-74628720	MS.gene27427:CDS	40.0%
	AAGGAATTCATGTGTGTGCA+TGG	-	chr6.2:74629487-74629506	MS.gene27427:intron	40.0%
	ACTTATGAGAGCTCATGGAT+TGG	-	chr6.2:74629771-74629790	MS.gene27427:CDS	40.0%
	AGAGAACAATGCTTGCTTGA+GGG	+	chr6.2:74628969-74628988	None:intergenic	40.0%
	AGAGCTTCATTTGATGGAAG+AGG	+	chr6.2:74628740-74628759	None:intergenic	40.0%
	AGCTCTTCCAAGGATTTGTA+AGG	+	chr6.2:74630168-74630187	None:intergenic	40.0%
	AGGGAATTCTGCATGAAGAA+AGG	-	chr6.2:74629468-74629487	MS.gene27427:intron	40.0%
	ATGAATCCATCATGGCAACA+AGG	-	chr6.2:74629438-74629457	MS.gene27427:intron	40.0%
	CTAAGATGGATACATGAGCA+AGG	-	chr6.2:74629988-74630007	MS.gene27427:CDS	40.0%
	GAAGTGAGAGCTTCATTTGA+TGG	+	chr6.2:74628746-74628765	None:intergenic	40.0%
	GCCTTATAAAGTCTGCATTG+TGG	+	chr6.2:74630120-74630139	None:intergenic	40.0%
	GGAAGGAAATAAACTCCATG+AGG	-	chr6.2:74628658-74628677	MS.gene27427:CDS	40.0%
	GGGGAAAAGATGCCAATAAT+AGG	-	chr6.2:74628695-74628714	MS.gene27427:CDS	40.0%
	TCTTGCAGATAGCACTAAGA+TGG	-	chr6.2:74629974-74629993	MS.gene27427:CDS	40.0%
	TCTTGTACCTGATTAACTGC+CGG	+	chr6.2:74629290-74629309	None:intergenic	40.0%
	TGAATCCATCATGGCAACAA+GGG	-	chr6.2:74629439-74629458	MS.gene27427:intron	40.0%
	TGGATCTCTACTTGATTCAC+TGG	-	chr6.2:74629078-74629097	MS.gene27427:intron	40.0%
!	GTTGAAGGCTTTAACTTCAC+AGG	-	chr6.2:74629122-74629141	MS.gene27427:intron	40.0%
!	TAGAAAGAAGAGTGTAGCTC+AGG	-	chr6.2:74629590-74629609	MS.gene27427:CDS	40.0%
!!	TTTTGAGAGCCTTGAGAACA+AGG	+	chr6.2:74628943-74628962	None:intergenic	40.0%
	ACAAATCCTTGGAAGAGCTG+TGG	-	chr6.2:74630169-74630188	MS.gene27427:CDS	45.0%
	AGCATCATTGCACCATAGCT+TGG	+	chr6.2:74628912-74628931	None:intergenic	45.0%
	AGTTTCCCTTGTTGCCATGA+TGG	+	chr6.2:74629447-74629466	None:intergenic	45.0%
	ATGGCAACAAGGGAAACTCA+GGG	-	chr6.2:74629449-74629468	MS.gene27427:intron	45.0%
	CAAATCCTTGGAAGAGCTGT+GGG	-	chr6.2:74630170-74630189	MS.gene27427:CDS	45.0%
	CATTTCACCGGCAGTTAATC+AGG	-	chr6.2:74629280-74629299	MS.gene27427:CDS	45.0%
	CTGATTAACTGCCGGTGAAA+TGG	+	chr6.2:74629282-74629301	None:intergenic	45.0%
	GAGAGAACAATGCTTGCTTG+AGG	+	chr6.2:74628970-74628989	None:intergenic	45.0%
	GATGGAGAACCCTATTCTTC+AGG	-	chr6.2:74629554-74629573	MS.gene27427:intron	45.0%
	GCAGTTCCTAGGCCTATTAT+TGG	+	chr6.2:74628710-74628729	None:intergenic	45.0%
	TCACCATGACCTTGTTCTCA+AGG	-	chr6.2:74628931-74628950	MS.gene27427:intron	45.0%
!	AAAGAAGAGTGTAGCTCAGG+TGG	-	chr6.2:74629593-74629612	MS.gene27427:CDS	45.0%
!	AGGCTTTAACTTCACAGGTG+AGG	-	chr6.2:74629127-74629146	MS.gene27427:intron	45.0%
!	GAATCTGAGGTTGGAGTATG+TGG	-	chr6.2:74629058-74629077	MS.gene27427:intron	45.0%
!	TATGGTACCGAAGAACCTCT+AGG	-	chr6.2:74628821-74628840	MS.gene27427:CDS	45.0%
!	TTGGGGTTCTAATGCTGTGA+TGG	-	chr6.2:74629536-74629555	MS.gene27427:intron	45.0%
!	TTGGTTGATGCCCTTGACAT+TGG	-	chr6.2:74628770-74628789	MS.gene27427:CDS	45.0%
	AGCTTCGCCTAGAGGTTCTT+CGG	+	chr6.2:74628831-74628850	None:intergenic	50.0%
	CATGGCAACAAGGGAAACTC+AGG	-	chr6.2:74629448-74629467	MS.gene27427:intron	50.0%
	GAACAATGCTTGCTTGAGGG+TGG	+	chr6.2:74628966-74628985	None:intergenic	50.0%
	GAGCCTTGAGAACAAGGTCA+TGG	+	chr6.2:74628937-74628956	None:intergenic	50.0%
	GAGGAGTTGTAGCAGTTCCT+AGG	+	chr6.2:74628721-74628740	None:intergenic	50.0%
	GTGTGTGCATGGTCACCATT+GGG	-	chr6.2:74629498-74629517	MS.gene27427:intron	50.0%
	TGTGTGTGCATGGTCACCAT+TGG	-	chr6.2:74629497-74629516	MS.gene27427:intron	50.0%
	TTTGACACAGCTTCGCCTAG+AGG	+	chr6.2:74628839-74628858	None:intergenic	50.0%
	ACCATCCCACAGCTCTTCCA+AGG	+	chr6.2:74630178-74630197	None:intergenic	55.0%
	TCCTTGGAAGAGCTGTGGGA+TGG	-	chr6.2:74630174-74630193	MS.gene27427:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	74628656	74630206	74628656	ID=MS.gene27427
chr6.2	mRNA	74628656	74630206	74628656	ID=MS.gene27427.t1;Parent=MS.gene27427
chr6.2	exon	74629881	74630206	74629881	ID=MS.gene27427.t1.exon1;Parent=MS.gene27427.t1
chr6.2	CDS	74629881	74630206	74629881	ID=cds.MS.gene27427.t1;Parent=MS.gene27427.t1
chr6.2	exon	74629561	74629804	74629561	ID=MS.gene27427.t1.exon2;Parent=MS.gene27427.t1
chr6.2	CDS	74629561	74629804	74629561	ID=cds.MS.gene27427.t1;Parent=MS.gene27427.t1
chr6.2	exon	74629251	74629430	74629251	ID=MS.gene27427.t1.exon3;Parent=MS.gene27427.t1
chr6.2	CDS	74629251	74629430	74629251	ID=cds.MS.gene27427.t1;Parent=MS.gene27427.t1
chr6.2	exon	74628656	74628880	74628656	ID=MS.gene27427.t1.exon4;Parent=MS.gene27427.t1
chr6.2	CDS	74628656	74628880	74628656	ID=cds.MS.gene27427.t1;Parent=MS.gene27427.t1

Gene Sequence

>MS.gene27427

ATGGAAGGAAATAAACTCCATGAGGTGATACTAAATTCAGGGGAAAAGATGCCAATAATAGGCCTAGGAACTGCTACAACTCCTCTTCCATCAAATGAAGCTCTCACTTCAATTTTGGTTGATGCCCTTGACATTGGTTACAGACATTTTGATACAGCTTCTATCTATGGTACCGAAGAACCTCTAGGCGAAGCTGTGTCAAAAGCTTTAGAGATCGGCCTCATAAAAAAACGAGATGAAGTTTTCATTACTTCCAAGCTATGGTGCAATGATGCTCACCATGACCTTGTTCTCAAGGCTCTCAAAACCACCCTCAAGCAAGCATTGTTCTCTCGAACTTTTTCTTTTAAGGCTGTGTTTTTTCCTTCTCTAATTTTGTTATTTTTTGTTCGAATTGTTTAGGAATCTGAGGTTGGAGTATGTGGATCTCTACTTGATTCACTGGCCAGTGAGATTGAAAGAAGATGTTGAAGGCTTTAACTTCACAGGTGAGGATGTGATTCCCTTTGACATTAAAGCAACATGGAAAACTATGGAAGATTGTTACAGATTAGGCTTAGCCAAATCTATTGGTGTTAGCAACTTTGGTATCAAAAAGCTTTCCTTACTTTTGGAAAATACAACCATTTCACCGGCAGTTAATCAGGTACAAGAAGTAATCAAATGAATTAACCGAGTATTTGTCCGAGTCATTAACCAATCAATATTACGTTAATACTAATATAACGTGTTATGAAATTCACTCAATTGGTTGCATGTCGATTATTTGGATTTAGGTAGAAATGAATCCATCATGGCAACAAGGGAAACTCAGGGAATTCTGCATGAAGAAAGGAATTCATGTGTGTGCATGGTCACCATTGGGAGCATACAAAGTATTTTGGGGTTCTAATGCTGTGATGGAGAACCCTATTCTTCAGGAAATTGCTGAGGCTAGAAAGAAGAGTGTAGCTCAGGTGGAATTGATTTTATAGTTCAAACTAATTTCGATTACAACTTTGATGAATCTTGTCCTAACAAACTGTTCTGAAACCTTAAAATGTTAGATAAATGGCCTCTTTAGATTTCTTAGTGCAGCTTATCTACGAACATAAATACTTGTGAGGCAGATTATGACTTATGAGAGCTCATGGATTGGAAACAGCTAATGACATGGTCATAAGCTCTTTTCAGCTTATTTCCGTAAGCTCTTTACTGTCGTTTATGCAAATAATTTATAAGAAAAAAGTTTGACTTTATTTTAACTTTTGTTATAAAAATAGCTTATATATAAGTAATTTTAGGATAAACAACATATGCACACTAATAAGCAAGTTTATCTTGCAGATAGCACTAAGATGGATACATGAGCAAGGAACAAGTGTAATTGTGAAAAGCTTCAACAAAGAGAGGATGAAACAGAACCTTGAAATATTTGATTGGAAACTGAACCAAGAAGAATTGGACAAAATCAATAAGATTCCACAATGCAGACTTTATAAGGCTGAAATGTTTTTATCTGAAAATGGACCTTACAAATCCTTGGAAGAGCTGTGGGATGGTGACCCTTGA

Protein sequence

>MS.gene27427.t1

MEGNKLHEVILNSGEKMPIIGLGTATTPLPSNEALTSILVDALDIGYRHFDTASIYGTEEPLGEAVSKALEIGLIKKRDEVFITSKLWCNDAHHDLVLKALKTTLKQALNLRLEYVDLYLIHWPVRLKEDVEGFNFTGEDVIPFDIKATWKTMEDCYRLGLAKSIGVSNFGIKKLSLLLENTTISPAVNQVEMNPSWQQGKLREFCMKKGIHVCAWSPLGAYKVFWGSNAVMENPILQEIAEARKKSVAQIALRWIHEQGTSVIVKSFNKERMKQNLEIFDWKLNQEELDKINKIPQCRLYKAEMFLSENGPYKSLEELWDGDP