Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29915.t1 | XP_013445570.1 | 96 | 672 | 27 | 0 | 1 | 672 | 1 | 672 | 0.00E+00 | 1265.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29915.t1 | Q94AS9 | 77.4 | 619 | 132 | 3 | 59 | 671 | 76 | 692 | 2.9e-290 | 998.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29915.t1 | A0A072TQU5 | 96.0 | 672 | 27 | 0 | 1 | 672 | 1 | 672 | 0.0e+00 | 1265.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049356 | MS.gene29915 | 0.825355 | 4.91E-54 | -1.69E-46 |
MS.gene049369 | MS.gene29915 | 0.849141 | 3.91E-60 | -1.69E-46 |
MS.gene050399 | MS.gene29915 | 0.808272 | 3.36E-50 | -1.69E-46 |
MS.gene050400 | MS.gene29915 | 0.800387 | 1.48E-48 | -1.69E-46 |
MS.gene050971 | MS.gene29915 | 0.819086 | 1.40E-52 | -1.69E-46 |
MS.gene051692 | MS.gene29915 | 0.80999 | 1.44E-50 | -1.69E-46 |
MS.gene051874 | MS.gene29915 | 0.802616 | 5.16E-49 | -1.69E-46 |
MS.gene052188 | MS.gene29915 | 0.81269 | 3.73E-51 | -1.69E-46 |
MS.gene052340 | MS.gene29915 | 0.817486 | 3.22E-52 | -1.69E-46 |
MS.gene05316 | MS.gene29915 | 0.833223 | 6.03E-56 | -1.69E-46 |
MS.gene053449 | MS.gene29915 | 0.87133 | 7.42E-67 | -1.69E-46 |
MS.gene053813 | MS.gene29915 | 0.821037 | 5.00E-53 | -1.69E-46 |
MS.gene053912 | MS.gene29915 | 0.817566 | 3.09E-52 | -1.69E-46 |
MS.gene055909 | MS.gene29915 | 0.804702 | 1.90E-49 | -1.69E-46 |
MS.gene055911 | MS.gene29915 | 0.804729 | 1.88E-49 | -1.69E-46 |
MS.gene056422 | MS.gene29915 | 0.812729 | 3.66E-51 | -1.69E-46 |
MS.gene056511 | MS.gene29915 | 0.806253 | 9.00E-50 | -1.69E-46 |
MS.gene056609 | MS.gene29915 | 0.812848 | 3.45E-51 | -1.69E-46 |
MS.gene057449 | MS.gene29915 | 0.810683 | 1.02E-50 | -1.69E-46 |
MS.gene057450 | MS.gene29915 | 0.802575 | 5.26E-49 | -1.69E-46 |
MS.gene057537 | MS.gene29915 | 0.837812 | 4.17E-57 | -1.69E-46 |
MS.gene057926 | MS.gene29915 | 0.808089 | 3.68E-50 | -1.69E-46 |
MS.gene057927 | MS.gene29915 | 0.808722 | 2.69E-50 | -1.69E-46 |
MS.gene05842 | MS.gene29915 | 0.804674 | 1.93E-49 | -1.69E-46 |
MS.gene058459 | MS.gene29915 | 0.802414 | 5.67E-49 | -1.69E-46 |
MS.gene058928 | MS.gene29915 | 0.826852 | 2.16E-54 | -1.69E-46 |
MS.gene059305 | MS.gene29915 | 0.817691 | 2.89E-52 | -1.69E-46 |
MS.gene059366 | MS.gene29915 | 0.809485 | 1.85E-50 | -1.69E-46 |
MS.gene059674 | MS.gene29915 | 0.846179 | 2.55E-59 | -1.69E-46 |
MS.gene059676 | MS.gene29915 | 0.811026 | 8.60E-51 | -1.69E-46 |
MS.gene059711 | MS.gene29915 | 0.806881 | 6.63E-50 | -1.69E-46 |
MS.gene059807 | MS.gene29915 | 0.841171 | 5.59E-58 | -1.69E-46 |
MS.gene060818 | MS.gene29915 | 0.838894 | 2.19E-57 | -1.69E-46 |
MS.gene060837 | MS.gene29915 | 0.830637 | 2.62E-55 | -1.69E-46 |
MS.gene061051 | MS.gene29915 | -0.808414 | 3.13E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene070510 | MS.gene29915 | PPI |
MS.gene81622 | MS.gene29915 | PPI |
MS.gene67840 | MS.gene29915 | PPI |
MS.gene016743 | MS.gene29915 | PPI |
MS.gene37911 | MS.gene29915 | PPI |
MS.gene057884 | MS.gene29915 | PPI |
MS.gene057883 | MS.gene29915 | PPI |
MS.gene016758 | MS.gene29915 | PPI |
MS.gene81617 | MS.gene29915 | PPI |
MS.gene070505 | MS.gene29915 | PPI |
MS.gene057886 | MS.gene29915 | PPI |
MS.gene070509 | MS.gene29915 | PPI |
MS.gene070503 | MS.gene29915 | PPI |
MS.gene070507 | MS.gene29915 | PPI |
MS.gene81620 | MS.gene29915 | PPI |
MS.gene81615 | MS.gene29915 | PPI |
MS.gene29915 | MS.gene070511 | PPI |
MS.gene070492 | MS.gene29915 | PPI |
MS.gene016742 | MS.gene29915 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29915.t1 | MTR_8g464570 | 97.321 | 672 | 18 | 0 | 1 | 672 | 1 | 672 | 0.0 | 1365 |
MS.gene29915.t1 | MTR_2g081110 | 71.927 | 659 | 160 | 6 | 30 | 671 | 17 | 667 | 0.0 | 990 |
MS.gene29915.t1 | MTR_7g012260 | 50.946 | 634 | 285 | 11 | 44 | 666 | 88 | 706 | 0.0 | 620 |
MS.gene29915.t1 | MTR_3g109030 | 39.728 | 589 | 326 | 13 | 61 | 635 | 72 | 645 | 1.58e-128 | 397 |
MS.gene29915.t1 | MTR_4g058730 | 37.762 | 572 | 329 | 12 | 61 | 623 | 58 | 611 | 6.77e-126 | 387 |
MS.gene29915.t1 | MTR_4g130820 | 38.153 | 574 | 336 | 10 | 58 | 624 | 95 | 656 | 7.60e-125 | 387 |
MS.gene29915.t1 | MTR_2g094860 | 36.806 | 576 | 333 | 12 | 63 | 627 | 78 | 633 | 1.56e-123 | 383 |
MS.gene29915.t1 | MTR_2g460590 | 37.318 | 619 | 360 | 13 | 61 | 667 | 42 | 644 | 2.04e-123 | 382 |
MS.gene29915.t1 | MTR_1g028370 | 35.324 | 586 | 352 | 10 | 57 | 633 | 78 | 645 | 9.51e-121 | 376 |
MS.gene29915.t1 | MTR_1g064240 | 36.453 | 609 | 362 | 13 | 64 | 664 | 73 | 664 | 7.24e-119 | 371 |
MS.gene29915.t1 | MTR_3g088875 | 37.805 | 574 | 337 | 13 | 63 | 627 | 37 | 599 | 3.65e-118 | 369 |
MS.gene29915.t1 | MTR_3g091080 | 36.505 | 578 | 338 | 11 | 57 | 624 | 76 | 634 | 1.01e-117 | 368 |
MS.gene29915.t1 | MTR_8g027755 | 35.959 | 584 | 345 | 13 | 57 | 627 | 80 | 647 | 6.10e-116 | 364 |
MS.gene29915.t1 | MTR_7g117310 | 35.678 | 583 | 340 | 11 | 57 | 624 | 24 | 586 | 2.65e-114 | 358 |
MS.gene29915.t1 | MTR_7g117310 | 35.334 | 583 | 342 | 10 | 57 | 624 | 78 | 640 | 5.95e-114 | 358 |
MS.gene29915.t1 | MTR_7g117310 | 35.678 | 583 | 340 | 11 | 57 | 624 | 90 | 652 | 7.51e-114 | 358 |
MS.gene29915.t1 | MTR_7g034605 | 35.974 | 606 | 358 | 14 | 39 | 634 | 29 | 614 | 3.23e-113 | 355 |
MS.gene29915.t1 | MTR_6g477760 | 35.462 | 595 | 356 | 15 | 53 | 632 | 114 | 695 | 6.42e-105 | 334 |
MS.gene29915.t1 | MTR_6g075290 | 36.130 | 584 | 342 | 14 | 59 | 628 | 190 | 756 | 1.47e-99 | 322 |
MS.gene29915.t1 | MTR_6g075440 | 32.280 | 601 | 356 | 15 | 53 | 629 | 160 | 733 | 1.98e-96 | 314 |
MS.gene29915.t1 | MTR_6g075440 | 32.280 | 601 | 356 | 15 | 53 | 629 | 160 | 733 | 2.52e-96 | 314 |
MS.gene29915.t1 | MTR_5g007630 | 34.175 | 594 | 346 | 15 | 53 | 629 | 163 | 728 | 1.21e-92 | 303 |
MS.gene29915.t1 | MTR_6g075290 | 35.926 | 540 | 315 | 14 | 103 | 628 | 32 | 554 | 1.90e-85 | 279 |
MS.gene29915.t1 | MTR_6g075290 | 35.636 | 550 | 323 | 14 | 93 | 628 | 183 | 715 | 2.24e-85 | 283 |
MS.gene29915.t1 | MTR_6g075390 | 32.130 | 554 | 336 | 16 | 53 | 589 | 106 | 636 | 4.40e-81 | 271 |
MS.gene29915.t1 | MTR_6g075410 | 28.739 | 595 | 374 | 21 | 56 | 628 | 92 | 658 | 3.19e-68 | 236 |
MS.gene29915.t1 | MTR_6g076060 | 31.545 | 466 | 285 | 11 | 180 | 629 | 14 | 461 | 1.76e-61 | 214 |
MS.gene29915.t1 | MTR_6g075320 | 34.746 | 118 | 74 | 2 | 64 | 180 | 151 | 266 | 1.95e-16 | 80.9 |
MS.gene29915.t1 | MTR_2g094810 | 31.250 | 112 | 71 | 2 | 147 | 253 | 12 | 122 | 6.49e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29915.t1 | AT5G54250 | 77.383 | 619 | 132 | 3 | 59 | 671 | 76 | 692 | 0.0 | 1004 |
MS.gene29915.t1 | AT5G54250 | 77.383 | 619 | 132 | 3 | 59 | 671 | 76 | 692 | 0.0 | 1004 |
MS.gene29915.t1 | AT5G54250 | 77.383 | 619 | 132 | 3 | 59 | 671 | 76 | 692 | 0.0 | 1004 |
MS.gene29915.t1 | AT5G54250 | 76.575 | 619 | 132 | 4 | 59 | 671 | 76 | 687 | 0.0 | 987 |
MS.gene29915.t1 | AT5G15410 | 49.765 | 637 | 305 | 9 | 40 | 666 | 90 | 721 | 0.0 | 598 |
MS.gene29915.t1 | AT5G15410 | 49.765 | 637 | 305 | 9 | 40 | 666 | 91 | 722 | 0.0 | 598 |
MS.gene29915.t1 | AT2G28260 | 37.500 | 576 | 335 | 12 | 60 | 627 | 26 | 584 | 1.42e-127 | 392 |
MS.gene29915.t1 | AT2G28260 | 37.500 | 576 | 335 | 12 | 60 | 627 | 66 | 624 | 3.98e-127 | 392 |
MS.gene29915.t1 | AT5G53130 | 36.565 | 588 | 341 | 13 | 49 | 624 | 69 | 636 | 4.03e-125 | 387 |
MS.gene29915.t1 | AT2G24610 | 38.330 | 587 | 335 | 13 | 61 | 635 | 71 | 642 | 4.36e-124 | 385 |
MS.gene29915.t1 | AT2G24610 | 38.396 | 586 | 334 | 13 | 61 | 634 | 86 | 656 | 1.30e-123 | 384 |
MS.gene29915.t1 | AT3G48010 | 37.815 | 595 | 335 | 12 | 51 | 627 | 33 | 610 | 1.53e-122 | 380 |
MS.gene29915.t1 | AT1G01340 | 35.902 | 610 | 357 | 11 | 52 | 654 | 58 | 640 | 1.69e-122 | 380 |
MS.gene29915.t1 | AT1G01340 | 35.902 | 610 | 357 | 11 | 52 | 654 | 53 | 635 | 2.29e-122 | 380 |
MS.gene29915.t1 | AT4G30360 | 37.201 | 586 | 342 | 11 | 63 | 636 | 72 | 643 | 6.25e-119 | 372 |
MS.gene29915.t1 | AT5G14870 | 37.801 | 582 | 341 | 14 | 63 | 635 | 41 | 610 | 6.26e-119 | 371 |
MS.gene29915.t1 | AT4G01010 | 35.008 | 617 | 362 | 14 | 49 | 654 | 53 | 641 | 2.13e-118 | 369 |
MS.gene29915.t1 | AT4G01010 | 35.008 | 617 | 362 | 14 | 49 | 654 | 53 | 641 | 2.13e-118 | 369 |
MS.gene29915.t1 | AT2G23980 | 36.610 | 590 | 345 | 12 | 58 | 633 | 72 | 646 | 1.06e-117 | 369 |
MS.gene29915.t1 | AT2G23980 | 36.610 | 590 | 345 | 12 | 58 | 633 | 99 | 673 | 1.35e-117 | 369 |
MS.gene29915.t1 | AT2G23980 | 36.610 | 590 | 345 | 12 | 58 | 633 | 99 | 673 | 1.35e-117 | 369 |
MS.gene29915.t1 | AT2G23980 | 36.610 | 590 | 345 | 12 | 58 | 633 | 99 | 673 | 1.35e-117 | 369 |
MS.gene29915.t1 | AT2G23980 | 36.610 | 590 | 345 | 12 | 58 | 633 | 99 | 673 | 1.35e-117 | 369 |
MS.gene29915.t1 | AT2G23980 | 36.610 | 590 | 345 | 12 | 58 | 633 | 99 | 673 | 1.35e-117 | 369 |
MS.gene29915.t1 | AT5G57940 | 36.923 | 585 | 337 | 13 | 58 | 627 | 84 | 651 | 1.10e-116 | 365 |
MS.gene29915.t1 | AT5G57940 | 36.923 | 585 | 337 | 13 | 58 | 627 | 84 | 651 | 1.10e-116 | 365 |
MS.gene29915.t1 | AT5G57940 | 36.923 | 585 | 337 | 13 | 58 | 627 | 77 | 644 | 1.45e-116 | 365 |
MS.gene29915.t1 | AT1G19780 | 36.968 | 587 | 335 | 12 | 58 | 627 | 93 | 661 | 7.80e-116 | 364 |
MS.gene29915.t1 | AT4G30560 | 36.041 | 591 | 346 | 14 | 58 | 633 | 73 | 646 | 3.13e-114 | 359 |
MS.gene29915.t1 | AT4G30560 | 36.041 | 591 | 346 | 14 | 58 | 633 | 73 | 646 | 3.13e-114 | 359 |
MS.gene29915.t1 | AT4G30560 | 36.041 | 591 | 346 | 14 | 58 | 633 | 73 | 646 | 3.13e-114 | 359 |
MS.gene29915.t1 | AT4G30560 | 36.041 | 591 | 346 | 14 | 58 | 633 | 99 | 672 | 3.75e-114 | 360 |
MS.gene29915.t1 | AT4G30560 | 36.041 | 591 | 346 | 14 | 58 | 633 | 99 | 672 | 3.75e-114 | 360 |
MS.gene29915.t1 | AT1G15990 | 37.043 | 575 | 340 | 13 | 64 | 627 | 92 | 655 | 1.20e-113 | 358 |
MS.gene29915.t1 | AT2G23980 | 35.237 | 613 | 345 | 13 | 58 | 633 | 99 | 696 | 2.22e-112 | 356 |
MS.gene29915.t1 | AT2G23980 | 35.237 | 613 | 345 | 13 | 58 | 633 | 99 | 696 | 2.22e-112 | 356 |
MS.gene29915.t1 | AT2G23980 | 35.237 | 613 | 345 | 13 | 58 | 633 | 99 | 696 | 2.22e-112 | 356 |
MS.gene29915.t1 | AT2G23980 | 35.237 | 613 | 345 | 13 | 58 | 633 | 99 | 696 | 2.22e-112 | 356 |
MS.gene29915.t1 | AT2G46430 | 33.901 | 587 | 343 | 12 | 59 | 627 | 69 | 628 | 9.68e-108 | 342 |
MS.gene29915.t1 | AT2G46430 | 33.901 | 587 | 343 | 12 | 59 | 627 | 69 | 628 | 9.68e-108 | 342 |
MS.gene29915.t1 | AT3G17700 | 34.016 | 635 | 373 | 18 | 4 | 621 | 140 | 745 | 4.64e-100 | 323 |
MS.gene29915.t1 | AT3G17690 | 34.775 | 578 | 343 | 16 | 63 | 627 | 159 | 715 | 2.76e-98 | 318 |
MS.gene29915.t1 | AT1G19780 | 38.182 | 440 | 245 | 7 | 202 | 627 | 24 | 450 | 3.49e-92 | 296 |
MS.gene29915.t1 | AT3G17700 | 34.470 | 557 | 329 | 16 | 4 | 553 | 140 | 667 | 9.74e-90 | 294 |
MS.gene29915.t1 | AT2G46450 | 32.626 | 613 | 349 | 18 | 48 | 627 | 1 | 582 | 2.14e-87 | 287 |
MS.gene29915.t1 | AT2G46450 | 32.626 | 613 | 349 | 18 | 48 | 627 | 1 | 582 | 2.14e-87 | 287 |
MS.gene29915.t1 | AT3G17690 | 35.020 | 494 | 296 | 13 | 63 | 551 | 159 | 632 | 2.30e-86 | 284 |
MS.gene29915.t1 | AT2G46450 | 32.190 | 612 | 330 | 19 | 48 | 627 | 1 | 559 | 1.52e-82 | 273 |
MS.gene29915.t1 | AT2G46450 | 32.479 | 585 | 324 | 18 | 61 | 627 | 15 | 546 | 1.55e-82 | 273 |
MS.gene29915.t1 | AT2G46440 | 32.137 | 585 | 353 | 16 | 61 | 627 | 28 | 586 | 5.49e-76 | 256 |
MS.gene29915.t1 | AT2G46440 | 33.898 | 413 | 240 | 11 | 232 | 627 | 12 | 408 | 9.42e-59 | 204 |
MS.gene29915.t1 | AT3G17690 | 33.244 | 373 | 229 | 10 | 63 | 430 | 159 | 516 | 4.06e-54 | 194 |
MS.gene29915.t1 | AT5G37500 | 23.832 | 214 | 156 | 5 | 349 | 559 | 262 | 471 | 8.43e-13 | 72.0 |
MS.gene29915.t1 | AT5G37500 | 23.832 | 214 | 156 | 5 | 349 | 559 | 208 | 417 | 1.12e-12 | 72.0 |
MS.gene29915.t1 | AT5G37500 | 23.944 | 213 | 157 | 4 | 349 | 559 | 262 | 471 | 1.35e-12 | 71.6 |
MS.gene29915.t1 | AT5G37500 | 23.944 | 213 | 157 | 4 | 349 | 559 | 262 | 471 | 1.39e-12 | 71.6 |
MS.gene29915.t1 | AT3G02850 | 21.028 | 214 | 162 | 5 | 349 | 559 | 279 | 488 | 3.05e-11 | 67.0 |
MS.gene29915.t1 | AT3G02850 | 21.127 | 213 | 163 | 4 | 349 | 559 | 279 | 488 | 3.46e-11 | 67.0 |
MS.gene29915.t1 | AT3G02850 | 21.127 | 213 | 163 | 4 | 349 | 559 | 279 | 488 | 4.16e-11 | 67.0 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATACTGAGTGATAAATTT+TGG | 0.096669 | 8.3:+45721462 | None:intergenic |
TGACTGATGCTTTGCACTTT+TGG | 0.188658 | 8.3:-45724583 | MS.gene29915:CDS |
CATCTTGACAAGGGCCTTCT+AGG | 0.213081 | 8.3:+45715301 | None:intergenic |
TCAATTATGGAGCTTATAAA+TGG | 0.229313 | 8.3:-45718406 | MS.gene29915:CDS |
TGTCATAAGCCAATGTATTA+TGG | 0.245750 | 8.3:-45718521 | MS.gene29915:CDS |
TCTTCATTAGATTGTGCTTT+GGG | 0.275095 | 8.3:-45721569 | MS.gene29915:intron |
TCTTGCACCCACTTTGCTCT+TGG | 0.280047 | 8.3:+45724749 | None:intergenic |
ACAAATAACATTCTTTGAAC+TGG | 0.284384 | 8.3:+45716233 | None:intergenic |
TGAGACATTTGGATGCTCTT+TGG | 0.287862 | 8.3:+45718591 | None:intergenic |
GAATGGCATGGGCAGGGAAT+AGG | 0.293158 | 8.3:-45718466 | MS.gene29915:CDS |
ATACCATCTTTGTTTAGATT+TGG | 0.299313 | 8.3:-45717450 | MS.gene29915:CDS |
GGTGCCATTGTTTCAACATA+TGG | 0.301666 | 8.3:-45717276 | MS.gene29915:CDS |
TTCTTCATTAGATTGTGCTT+TGG | 0.305437 | 8.3:-45721570 | MS.gene29915:intron |
CTTGCACCCACTTTGCTCTT+GGG | 0.306607 | 8.3:+45724750 | None:intergenic |
AGTCCTGATCACTTCAATTA+TGG | 0.314000 | 8.3:-45718419 | MS.gene29915:CDS |
ATGTCTCTTCTTAAACCTTC+AGG | 0.316026 | 8.3:+45717476 | None:intergenic |
AGTATGTGACACAACATTTC+AGG | 0.324397 | 8.3:-45716007 | MS.gene29915:intron |
CTTGTCAAGATGTTCTTCAT+TGG | 0.326604 | 8.3:-45715290 | MS.gene29915:CDS |
ACATTGCTCTTTGAGACATT+TGG | 0.328723 | 8.3:+45718580 | None:intergenic |
CACCGCGGATGGCCGCCGCT+TGG | 0.342514 | 8.3:-45724498 | MS.gene29915:CDS |
CTTCTAGTCACTATGTTGAT+TGG | 0.344641 | 8.3:-45717876 | MS.gene29915:CDS |
GGGGCATGTTGGTACTTGTT+GGG | 0.349286 | 8.3:-45718617 | MS.gene29915:CDS |
GAAATTCTGACCTGAGGTAT+AGG | 0.359819 | 8.3:+45724416 | None:intergenic |
GTGGGGATGAGCTCCTTTCA+TGG | 0.360376 | 8.3:-45716130 | MS.gene29915:CDS |
TCATCCCCACTGAAGTTTCC+TGG | 0.365139 | 8.3:+45716143 | None:intergenic |
TTTGATGTCATAAGCACTTT+CGG | 0.368024 | 8.3:-45717966 | MS.gene29915:intron |
GTCATTAAGCCCCAGAAGAT+TGG | 0.374914 | 8.3:+45718335 | None:intergenic |
AGCTCCTTTCATGGTGTTTG+AGG | 0.378876 | 8.3:-45716121 | MS.gene29915:CDS |
GGTGGCTATTCCTTCTCTGT+TGG | 0.379051 | 8.3:-45721548 | MS.gene29915:CDS |
CAAAATACGCAATCATGTTA+AGG | 0.380943 | 8.3:+45721377 | None:intergenic |
TTCTGTTGTTGTGGTGGCCA+TGG | 0.381262 | 8.3:+45724943 | None:intergenic |
CGACGCACACAAAACCTATC+TGG | 0.382347 | 8.3:-45721433 | MS.gene29915:CDS |
AAATCATCTTGATTAGGCTT+TGG | 0.382366 | 8.3:+45715226 | None:intergenic |
AATGGCATGGGCAGGGAATA+GGG | 0.385231 | 8.3:-45718465 | MS.gene29915:CDS |
TTGAAAAGTTGCTGCATGTT+AGG | 0.385441 | 8.3:-45716167 | MS.gene29915:CDS |
AAGTCAAAATCATCTTGATT+AGG | 0.388135 | 8.3:+45715220 | None:intergenic |
TTCTTGCTAGTATGTGCAGC+AGG | 0.390289 | 8.3:-45724713 | MS.gene29915:CDS |
AGGGGCATGTTGGTACTTGT+TGG | 0.393382 | 8.3:-45718618 | MS.gene29915:CDS |
TTGTCAAGATGTTCTTCATT+GGG | 0.410507 | 8.3:-45715289 | MS.gene29915:CDS |
TCAACCCATCTCTTAATACT+TGG | 0.413143 | 8.3:+45716186 | None:intergenic |
ACTCACCAGGGTGGAGAACC+TGG | 0.415947 | 8.3:-45715399 | MS.gene29915:CDS |
TGTTATCCTTCCTATACCTC+AGG | 0.425121 | 8.3:-45724426 | MS.gene29915:intron |
AAAGCTTACCGTTTCTCCCT+TGG | 0.426701 | 8.3:+45717202 | None:intergenic |
CTTGAAACAACTGAGGCCTT+TGG | 0.431402 | 8.3:-45716050 | MS.gene29915:CDS |
AAAATACGCAATCATGTTAA+GGG | 0.435079 | 8.3:+45721378 | None:intergenic |
AACCATTCGGCCACCGCGGA+TGG | 0.438449 | 8.3:-45724509 | MS.gene29915:CDS |
TTGTTTAGATTTGGTGAGAC+AGG | 0.439170 | 8.3:-45717441 | MS.gene29915:intron |
AAGTTTGTTGAATAAAGATA+TGG | 0.442850 | 8.3:-45718492 | MS.gene29915:CDS |
CCTCATCATCGTCGTCGTCT+AGG | 0.446661 | 8.3:+45724843 | None:intergenic |
TCATTAAGCCCCAGAAGATT+GGG | 0.447419 | 8.3:+45718336 | None:intergenic |
GCTCCATAATTGAAGTGATC+AGG | 0.448645 | 8.3:+45718416 | None:intergenic |
GAGCAAAGTGGGTGCAAGAA+TGG | 0.449100 | 8.3:-45724745 | MS.gene29915:CDS |
TGTCGTTTATAAGACCTAGA+AGG | 0.456991 | 8.3:-45715315 | MS.gene29915:CDS |
GTGGAGAACCTGGGGTGCTG+TGG | 0.459056 | 8.3:-45715389 | MS.gene29915:CDS |
GTTTCAACATATGGATGAGC+TGG | 0.463529 | 8.3:-45717267 | MS.gene29915:CDS |
GGGTGCTGTGGCCATACAAT+TGG | 0.470066 | 8.3:-45715377 | MS.gene29915:CDS |
GAGCAATGTTATAAAACAAA+TGG | 0.470100 | 8.3:-45718566 | MS.gene29915:CDS |
ACTTACATTTGCTAACCATT+CGG | 0.472710 | 8.3:-45724522 | MS.gene29915:CDS |
GACCAAGCGGCGGCCATCCG+CGG | 0.473964 | 8.3:+45724496 | None:intergenic |
TGCATACTAAAATAGGCTGC+AGG | 0.474208 | 8.3:-45718638 | MS.gene29915:intron |
ATGTGCAGCAGGGTTGTTTG+TGG | 0.481147 | 8.3:-45724702 | MS.gene29915:CDS |
TAACTATGAAAGACAACGTT+GGG | 0.483093 | 8.3:-45717543 | MS.gene29915:CDS |
GAATAAAGATATGGCAAGAA+TGG | 0.483868 | 8.3:-45718483 | MS.gene29915:CDS |
CCTTCTCCATGCCAATTGTA+TGG | 0.485060 | 8.3:+45715366 | None:intergenic |
AACGTTGGGCTGCTATGCGT+GGG | 0.486010 | 8.3:-45717529 | MS.gene29915:CDS |
GGCCATCCGCGGTGGCCGAA+TGG | 0.486336 | 8.3:+45724507 | None:intergenic |
TCTGGGGCTTAATGACTCTC+AGG | 0.487909 | 8.3:-45718328 | MS.gene29915:intron |
CTTGTACTTCCATAATACAT+TGG | 0.494028 | 8.3:+45718512 | None:intergenic |
CTCAGTTACATCGTCGTTCG+CGG | 0.494697 | 8.3:+45724886 | None:intergenic |
GGAGGAAGAAGAGCAGCAAC+CGG | 0.495278 | 8.3:-45724822 | MS.gene29915:CDS |
ACCAATCCGTTGTGCTCTCT+AGG | 0.496478 | 8.3:+45717940 | None:intergenic |
ATGGCAAGAATGGCATGGGC+AGG | 0.499094 | 8.3:-45718473 | MS.gene29915:CDS |
AAGAATGTTATTTGTAGTGA+GGG | 0.501208 | 8.3:-45716225 | MS.gene29915:CDS |
GAAAGAGCATAGAAGAAAAG+TGG | 0.510624 | 8.3:+45724677 | None:intergenic |
CAAATAACATTCTTTGAACT+GGG | 0.515194 | 8.3:+45716234 | None:intergenic |
AAAGAATGTTATTTGTAGTG+AGG | 0.517668 | 8.3:-45716226 | MS.gene29915:CDS |
ACAAGTGTTGATGTTGATAG+TGG | 0.518429 | 8.3:+45716077 | None:intergenic |
AGCAACCGGTGAATTATAGA+AGG | 0.519221 | 8.3:-45724808 | MS.gene29915:CDS |
AGCAGCCAAGTATTAAGAGA+TGG | 0.519899 | 8.3:-45716191 | MS.gene29915:CDS |
TTGTATGGCCACAGCACCCC+AGG | 0.520940 | 8.3:+45715381 | None:intergenic |
CAACGTTGGGCTGCTATGCG+TGG | 0.521277 | 8.3:-45717530 | MS.gene29915:CDS |
ATTCCTTCTCTGTTGGAACA+AGG | 0.524651 | 8.3:-45721541 | MS.gene29915:CDS |
GGCCTTTGGTCTTGAAGCTG+AGG | 0.524971 | 8.3:-45716036 | MS.gene29915:CDS |
GTCTTGTTCTGTTGTTGTGG+TGG | 0.526859 | 8.3:+45724937 | None:intergenic |
TGCGTTTCGCCGTCTTGAAG+CGG | 0.528092 | 8.3:+45724549 | None:intergenic |
GTACACGTTTGTGAAGGAAA+AGG | 0.529854 | 8.3:-45715443 | MS.gene29915:CDS |
AGAAGCAAGTGATGCAATTG+AGG | 0.532010 | 8.3:-45717631 | MS.gene29915:CDS |
TCACCAAATCTAAACAAAGA+TGG | 0.533108 | 8.3:+45717447 | None:intergenic |
AATATTCACCAAGGGAGAAA+CGG | 0.536722 | 8.3:-45717210 | MS.gene29915:intron |
GGAACAAGGTTCAGTTACAT+TGG | 0.537909 | 8.3:-45721527 | MS.gene29915:CDS |
GGGCATGTTGGTACTTGTTG+GGG | 0.538151 | 8.3:-45718616 | MS.gene29915:CDS |
TGTTATAAAACAAATGGTTG+TGG | 0.543456 | 8.3:-45718560 | MS.gene29915:CDS |
AATAGGCTGCAGGGGCATGT+TGG | 0.543827 | 8.3:-45718628 | MS.gene29915:intron |
TCATTAGATTGTGCTTTGGG+TGG | 0.544077 | 8.3:-45721566 | MS.gene29915:intron |
AAAAGGTGAAGAGAAGTGCT+AGG | 0.545216 | 8.3:-45715426 | MS.gene29915:CDS |
ATTGACCTTCTATAATTCAC+CGG | 0.547123 | 8.3:+45724803 | None:intergenic |
TGTAACTGAGGACAGTGAGC+TGG | 0.547190 | 8.3:-45724873 | MS.gene29915:CDS |
GTCTCCTCAAACACCATGAA+AGG | 0.551605 | 8.3:+45716117 | None:intergenic |
AAGCAAGAGCGACCAAGCGG+CGG | 0.551706 | 8.3:+45724486 | None:intergenic |
AATTGGCATGGAGAAGGTAC+AGG | 0.553744 | 8.3:-45715360 | MS.gene29915:CDS |
GCAGCCAAGTATTAAGAGAT+GGG | 0.558128 | 8.3:-45716190 | MS.gene29915:CDS |
ACCTAGAGAGCACAACGGAT+TGG | 0.561226 | 8.3:-45717941 | MS.gene29915:CDS |
GCACCCCAGGTTCTCCACCC+TGG | 0.562884 | 8.3:+45715394 | None:intergenic |
TATGTTGATTGGAAACATCA+AGG | 0.563307 | 8.3:-45717865 | MS.gene29915:intron |
CCATACAATTGGCATGGAGA+AGG | 0.568101 | 8.3:-45715366 | MS.gene29915:CDS |
CAAGCGGCGGCCATCCGCGG+TGG | 0.576905 | 8.3:+45724499 | None:intergenic |
TCTTGCTAGTATGTGCAGCA+GGG | 0.577383 | 8.3:-45724712 | MS.gene29915:CDS |
AAGATATGGCAAGAATGGCA+TGG | 0.577883 | 8.3:-45718478 | MS.gene29915:CDS |
CATGGAGAAGGTACAGGCAT+AGG | 0.578603 | 8.3:-45715354 | MS.gene29915:CDS |
AGATATGGCAAGAATGGCAT+GGG | 0.580974 | 8.3:-45718477 | MS.gene29915:CDS |
CCTAGACGACGACGATGATG+AGG | 0.581648 | 8.3:-45724843 | MS.gene29915:CDS |
GCATACTAAAATAGGCTGCA+GGG | 0.582067 | 8.3:-45718637 | MS.gene29915:intron |
TGTGGACCCAAGAGCAAAGT+GGG | 0.584915 | 8.3:-45724756 | MS.gene29915:CDS |
AGTGCTAGGTATTACTCACC+AGG | 0.585592 | 8.3:-45715412 | MS.gene29915:CDS |
TGAGGATAAGAAATGTTGAA+TGG | 0.586161 | 8.3:-45717613 | MS.gene29915:CDS |
ACACATACATGAATCACTGA+TGG | 0.586412 | 8.3:+45724655 | None:intergenic |
AGTGGAAGACGCTCTATGAA+AGG | 0.587352 | 8.3:+45716095 | None:intergenic |
GGTGTCTTGTTCTGTTGTTG+TGG | 0.589452 | 8.3:+45724934 | None:intergenic |
ATCCTCAGCTTCAAGACCAA+AGG | 0.589698 | 8.3:+45716034 | None:intergenic |
CTCACCAGGGTGGAGAACCT+GGG | 0.593360 | 8.3:-45715398 | MS.gene29915:CDS |
TGGCAAGAATGGCATGGGCA+GGG | 0.594198 | 8.3:-45718472 | MS.gene29915:CDS |
TGTTAGGTACACGTTTGTGA+AGG | 0.596414 | 8.3:-45715449 | MS.gene29915:intron |
TATCTTCCTCCGCTTCAAGA+CGG | 0.596503 | 8.3:-45724558 | MS.gene29915:CDS |
GAAATGTTGAATGGTGGATG+AGG | 0.599633 | 8.3:-45717604 | MS.gene29915:CDS |
AGTTGCTGCATGTTAGGACC+AGG | 0.599864 | 8.3:-45716161 | MS.gene29915:CDS |
TTCTGACCTGAGGTATAGGA+AGG | 0.600329 | 8.3:+45724420 | None:intergenic |
GAACCTTGTTCCAACAGAGA+AGG | 0.600816 | 8.3:+45721538 | None:intergenic |
AGCAAGTATTAGTCGAGCTG+TGG | 0.605707 | 8.3:-45724774 | MS.gene29915:CDS |
TCATCCATATGTTGAAACAA+TGG | 0.605878 | 8.3:+45717272 | None:intergenic |
CTGTGGCCATACAATTGGCA+TGG | 0.607381 | 8.3:-45715372 | MS.gene29915:CDS |
TGTATGTGTCTCTTCATCGA+TGG | 0.609519 | 8.3:-45724641 | MS.gene29915:CDS |
AACATCATAATCTTGACGAG+TGG | 0.610549 | 8.3:-45717903 | MS.gene29915:CDS |
TGTGTCTCTTCATCGATGGA+TGG | 0.610956 | 8.3:-45724637 | MS.gene29915:CDS |
GGGCAGGGAATAGGGAAGCA+AGG | 0.613702 | 8.3:-45718457 | MS.gene29915:CDS |
CAATGAAGAACATCTTGACA+AGG | 0.615745 | 8.3:+45715291 | None:intergenic |
GTTTCGCCGTCTTGAAGCGG+AGG | 0.624163 | 8.3:+45724552 | None:intergenic |
GAAATCTCTAATATTCACCA+AGG | 0.625141 | 8.3:-45717219 | MS.gene29915:CDS |
ACATTGGCTTATGACAAGAA+AGG | 0.628779 | 8.3:+45718528 | None:intergenic |
CATACTAAAATAGGCTGCAG+GGG | 0.630612 | 8.3:-45718636 | MS.gene29915:intron |
GCAAAGCATCAGTCATGCAA+CGG | 0.631386 | 8.3:+45724591 | None:intergenic |
GGATAAGAAATGTTGAATGG+TGG | 0.633633 | 8.3:-45717610 | MS.gene29915:CDS |
GTCAAAGAAGAAACCACGGC+GGG | 0.634313 | 8.3:+45724454 | None:intergenic |
TAGGACCAGGAAACTTCAGT+GGG | 0.639603 | 8.3:-45716148 | MS.gene29915:CDS |
ATGGTTCGCAGTCACTGTAA+CGG | 0.642051 | 8.3:-45724618 | MS.gene29915:CDS |
CTGTGGACCCAAGAGCAAAG+TGG | 0.642221 | 8.3:-45724757 | MS.gene29915:CDS |
TCACCAGGGTGGAGAACCTG+GGG | 0.650134 | 8.3:-45715397 | MS.gene29915:CDS |
ATATTGCAGATAGCAAGAGA+AGG | 0.654967 | 8.3:-45716260 | MS.gene29915:intron |
TGCTAACCATTCGGCCACCG+CGG | 0.655643 | 8.3:-45724513 | MS.gene29915:CDS |
TGAATATTAGAGATTTCACT+CGG | 0.657419 | 8.3:+45717225 | None:intergenic |
AGACGACGACGATGATGAGG+AGG | 0.660971 | 8.3:-45724840 | MS.gene29915:CDS |
AGAATGTTATTTGTAGTGAG+GGG | 0.661742 | 8.3:-45716224 | MS.gene29915:CDS |
TTAGGACCAGGAAACTTCAG+TGG | 0.671815 | 8.3:-45716149 | MS.gene29915:CDS |
AAATCTCTAATATTCACCAA+GGG | 0.676290 | 8.3:-45717218 | MS.gene29915:CDS |
CGCGAACGACGATGTAACTG+AGG | 0.684723 | 8.3:-45724885 | MS.gene29915:CDS |
GTATAGGAAGGATAACAAAG+AGG | 0.685639 | 8.3:+45724432 | None:intergenic |
GCTTATCTTAAGTCCCGCCG+TGG | 0.686431 | 8.3:-45724467 | MS.gene29915:CDS |
GATAAGCAAGAGCGACCAAG+CGG | 0.688296 | 8.3:+45724483 | None:intergenic |
AGAGGTCAAAGAAGAAACCA+CGG | 0.688528 | 8.3:+45724450 | None:intergenic |
AATGAAGAACATCTTGACAA+GGG | 0.692039 | 8.3:+45715292 | None:intergenic |
GTAACTATGAAAGACAACGT+TGG | 0.705274 | 8.3:-45717544 | MS.gene29915:CDS |
GTGCGTGTATGAAGAACGTG+AGG | 0.705428 | 8.3:+45724913 | None:intergenic |
TGTCACACTTGAAACAACTG+AGG | 0.710389 | 8.3:-45716057 | MS.gene29915:CDS |
ACGTTGGGCTGCTATGCGTG+GGG | 0.714184 | 8.3:-45717528 | MS.gene29915:CDS |
CGGAAACCTAGAGAGCACAA+CGG | 0.720733 | 8.3:-45717946 | MS.gene29915:CDS |
CTAGGTATTACTCACCAGGG+TGG | 0.743606 | 8.3:-45715408 | MS.gene29915:CDS |
GTGCTAGGTATTACTCACCA+GGG | 0.750633 | 8.3:-45715411 | MS.gene29915:CDS |
ACACGTTGTCGAAAACCCTG+CGG | 0.774495 | 8.3:+45717569 | None:intergenic |
GGTCAAAGAAGAAACCACGG+CGG | 0.787822 | 8.3:+45724453 | None:intergenic |
AGGACCAGGAAACTTCAGTG+GGG | 0.801529 | 8.3:-45716147 | MS.gene29915:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 45715216 | 45724963 | 45715216 | ID=MS.gene29915 |
chr8.3 | mRNA | 45715216 | 45724963 | 45715216 | ID=MS.gene29915.t1;Parent=MS.gene29915 |
chr8.3 | exon | 45724427 | 45724963 | 45724427 | ID=MS.gene29915.t1.exon1;Parent=MS.gene29915.t1 |
chr8.3 | CDS | 45724427 | 45724963 | 45724427 | ID=cds.MS.gene29915.t1;Parent=MS.gene29915.t1 |
chr8.3 | exon | 45721366 | 45721581 | 45721366 | ID=MS.gene29915.t1.exon2;Parent=MS.gene29915.t1 |
chr8.3 | CDS | 45721366 | 45721581 | 45721366 | ID=cds.MS.gene29915.t1;Parent=MS.gene29915.t1 |
chr8.3 | exon | 45718329 | 45718645 | 45718329 | ID=MS.gene29915.t1.exon3;Parent=MS.gene29915.t1 |
chr8.3 | CDS | 45718329 | 45718645 | 45718329 | ID=cds.MS.gene29915.t1;Parent=MS.gene29915.t1 |
chr8.3 | exon | 45717866 | 45717974 | 45717866 | ID=MS.gene29915.t1.exon4;Parent=MS.gene29915.t1 |
chr8.3 | CDS | 45717866 | 45717974 | 45717866 | ID=cds.MS.gene29915.t1;Parent=MS.gene29915.t1 |
chr8.3 | exon | 45717442 | 45717678 | 45717442 | ID=MS.gene29915.t1.exon5;Parent=MS.gene29915.t1 |
chr8.3 | CDS | 45717442 | 45717678 | 45717442 | ID=cds.MS.gene29915.t1;Parent=MS.gene29915.t1 |
chr8.3 | exon | 45717211 | 45717297 | 45717211 | ID=MS.gene29915.t1.exon6;Parent=MS.gene29915.t1 |
chr8.3 | CDS | 45717211 | 45717297 | 45717211 | ID=cds.MS.gene29915.t1;Parent=MS.gene29915.t1 |
chr8.3 | exon | 45716008 | 45716273 | 45716008 | ID=MS.gene29915.t1.exon7;Parent=MS.gene29915.t1 |
chr8.3 | CDS | 45716008 | 45716273 | 45716008 | ID=cds.MS.gene29915.t1;Parent=MS.gene29915.t1 |
chr8.3 | exon | 45715216 | 45715465 | 45715216 | ID=MS.gene29915.t1.exon8;Parent=MS.gene29915.t1 |
chr8.3 | CDS | 45715216 | 45715465 | 45715216 | ID=cds.MS.gene29915.t1;Parent=MS.gene29915.t1 |
Gene Sequence |
Protein sequence |