Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33464.t1 | XP_003604582.1 | 98.3 | 229 | 4 | 0 | 1 | 229 | 1 | 229 | 4.10E-123 | 450.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33464.t1 | Q8LBZ4 | 35.1 | 154 | 82 | 5 | 77 | 229 | 168 | 304 | 1.3e-16 | 88.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33464.t1 | G7JLU6 | 98.3 | 229 | 4 | 0 | 1 | 229 | 1 | 229 | 3.0e-123 | 450.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene33464 | 0.816097 | 6.59E-52 | -1.69E-46 |
| MS.gene049151 | MS.gene33464 | 0.802188 | 6.32E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene33464 | 0.806979 | 6.32E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene33464 | 0.815375 | 9.55E-52 | -1.69E-46 |
| MS.gene049297 | MS.gene33464 | 0.817822 | 2.70E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene33464 | 0.807114 | 5.92E-50 | -1.69E-46 |
| MS.gene049599 | MS.gene33464 | -0.817843 | 2.67E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene33464 | 0.873665 | 1.23E-67 | -1.69E-46 |
| MS.gene049910 | MS.gene33464 | 0.821798 | 3.33E-53 | -1.69E-46 |
| MS.gene049915 | MS.gene33464 | 0.83955 | 1.48E-57 | -1.69E-46 |
| MS.gene050128 | MS.gene33464 | 0.816276 | 6.01E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene33464 | 0.809615 | 1.73E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene33464 | 0.826375 | 2.81E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene33464 | 0.813687 | 2.26E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene33464 | 0.852358 | 4.87E-61 | -1.69E-46 |
| MS.gene050330 | MS.gene33464 | -0.837198 | 5.99E-57 | -1.69E-46 |
| MS.gene050558 | MS.gene33464 | 0.843122 | 1.70E-58 | -1.69E-46 |
| MS.gene050623 | MS.gene33464 | -0.829489 | 5.00E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene33464 | 0.827025 | 1.97E-54 | -1.69E-46 |
| MS.gene05119 | MS.gene33464 | -0.814172 | 1.76E-51 | -1.69E-46 |
| MS.gene051471 | MS.gene33464 | 0.810198 | 1.30E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene33464 | 0.80474 | 1.87E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene33464 | 0.818843 | 1.59E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene33464 | 0.864487 | 1.17E-64 | -1.69E-46 |
| MS.gene051983 | MS.gene33464 | 0.844719 | 6.35E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene33464 | 0.826499 | 2.62E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene33464 | 0.80744 | 5.05E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene33464 | 0.840733 | 7.28E-58 | -1.69E-46 |
| MS.gene052309 | MS.gene33464 | -0.801778 | 7.67E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene33464 | 0.818861 | 1.57E-52 | -1.69E-46 |
| MS.gene053073 | MS.gene33464 | 0.813244 | 2.82E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene33464 | 0.801366 | 9.32E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene33464 | 0.81681 | 4.56E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene33464 | 0.877106 | 8.20E-69 | -1.69E-46 |
| MS.gene054184 | MS.gene33464 | 0.81411 | 1.82E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene33464 | 0.82401 | 1.02E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene33464 | 0.811424 | 7.05E-51 | -1.69E-46 |
| MS.gene054542 | MS.gene33464 | 0.837478 | 5.08E-57 | -1.69E-46 |
| MS.gene054667 | MS.gene33464 | 0.823849 | 1.11E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene33464 | 0.845074 | 5.09E-59 | -1.69E-46 |
| MS.gene054942 | MS.gene33464 | 0.807596 | 4.68E-50 | -1.69E-46 |
| MS.gene054983 | MS.gene33464 | 0.826591 | 2.49E-54 | -1.69E-46 |
| MS.gene055133 | MS.gene33464 | 0.800233 | 1.59E-48 | -1.69E-46 |
| MS.gene055277 | MS.gene33464 | 0.813627 | 2.33E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene33464 | 0.850617 | 1.51E-60 | -1.69E-46 |
| MS.gene055428 | MS.gene33464 | 0.826928 | 2.07E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene33464 | 0.822392 | 2.43E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene33464 | -0.839884 | 1.21E-57 | -1.69E-46 |
| MS.gene056612 | MS.gene33464 | 0.83182 | 1.34E-55 | -1.69E-46 |
| MS.gene056875 | MS.gene33464 | 0.811172 | 8.00E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene33464 | 0.850816 | 1.33E-60 | -1.69E-46 |
| MS.gene05702 | MS.gene33464 | 0.806629 | 7.50E-50 | -1.69E-46 |
| MS.gene057121 | MS.gene33464 | 0.817246 | 3.64E-52 | -1.69E-46 |
| MS.gene057245 | MS.gene33464 | 0.810629 | 1.05E-50 | -1.69E-46 |
| MS.gene057260 | MS.gene33464 | 0.804039 | 2.61E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene33464 | 0.809817 | 1.57E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene33464 | 0.825323 | 4.99E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene33464 | 0.823617 | 1.26E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene33464 | 0.845234 | 4.61E-59 | -1.69E-46 |
| MS.gene058139 | MS.gene33464 | 0.810729 | 9.97E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene33464 | 0.833338 | 5.65E-56 | -1.69E-46 |
| MS.gene058182 | MS.gene33464 | 0.814307 | 1.65E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene33464 | 0.80207 | 6.68E-49 | -1.69E-46 |
| MS.gene058749 | MS.gene33464 | 0.835322 | 1.80E-56 | -1.69E-46 |
| MS.gene058845 | MS.gene33464 | 0.841016 | 6.13E-58 | -1.69E-46 |
| MS.gene05907 | MS.gene33464 | 0.813015 | 3.17E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene33464 | 0.825632 | 4.22E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene33464 | 0.850598 | 1.53E-60 | -1.69E-46 |
| MS.gene059597 | MS.gene33464 | 0.816378 | 5.70E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene33464 | 0.863246 | 2.86E-64 | -1.69E-46 |
| MS.gene059894 | MS.gene33464 | 0.856253 | 3.64E-62 | -1.69E-46 |
| MS.gene059899 | MS.gene33464 | 0.820852 | 5.51E-53 | -1.69E-46 |
| MS.gene06037 | MS.gene33464 | 0.80899 | 2.36E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene33464 | 0.838621 | 2.58E-57 | -1.69E-46 |
| MS.gene060495 | MS.gene33464 | 0.803835 | 2.88E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene33464 | 0.856096 | 4.05E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33464.t1 | MTR_4g014750 | 98.253 | 229 | 4 | 0 | 1 | 229 | 1 | 229 | 1.10e-168 | 464 |
| MS.gene33464.t1 | MTR_4g014750 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 2.53e-122 | 344 |
| MS.gene33464.t1 | MTR_1g052405 | 35.294 | 153 | 81 | 5 | 77 | 228 | 190 | 325 | 3.83e-18 | 82.0 |
| MS.gene33464.t1 | MTR_1g492730 | 35.948 | 153 | 82 | 5 | 77 | 228 | 165 | 302 | 1.94e-17 | 79.7 |
| MS.gene33464.t1 | MTR_1g052380 | 30.065 | 153 | 90 | 5 | 77 | 228 | 56 | 192 | 1.10e-14 | 70.9 |
| MS.gene33464.t1 | MTR_3g085620 | 29.143 | 175 | 102 | 5 | 59 | 228 | 16 | 173 | 1.38e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33464.t1 | AT2G38025 | 60.000 | 230 | 81 | 5 | 9 | 228 | 5 | 233 | 2.07e-86 | 256 |
| MS.gene33464.t1 | AT2G38025 | 67.262 | 168 | 49 | 2 | 67 | 228 | 43 | 210 | 4.36e-74 | 224 |
| MS.gene33464.t1 | AT3G57810 | 35.065 | 154 | 82 | 5 | 77 | 229 | 168 | 304 | 8.51e-21 | 89.0 |
| MS.gene33464.t1 | AT3G57810 | 35.065 | 154 | 82 | 5 | 77 | 229 | 168 | 304 | 8.51e-21 | 89.0 |
| MS.gene33464.t1 | AT3G57810 | 35.065 | 154 | 82 | 5 | 77 | 229 | 168 | 304 | 8.51e-21 | 89.0 |
Find 50 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGGGCAACCTGATTTC+TGG | 0.156112 | 4.2:+86562852 | MS.gene33464:CDS |
| AATCGGAATTCAAGCTTATT+TGG | 0.181024 | 4.2:+86560492 | MS.gene33464:CDS |
| GTATGGAAGTGAATTTAAAA+AGG | 0.264562 | 4.2:+86563440 | MS.gene33464:CDS |
| TTCATTCCGATTGCCGAGTA+TGG | 0.300593 | 4.2:+86563423 | MS.gene33464:CDS |
| TCTGGTATGTACACAATAAT+TGG | 0.313597 | 4.2:-86563246 | None:intergenic |
| CGGTTGCTTCAGTTGTTTCT+CGG | 0.328646 | 4.2:+86560466 | MS.gene33464:CDS |
| GATTCTCCTCCCCAGAAATC+AGG | 0.356950 | 4.2:-86562863 | None:intergenic |
| GCAGTTACTGCAGGCGGATT+GGG | 0.359521 | 4.2:+86562837 | MS.gene33464:intron |
| TGCAGTTACTGCAGGCGGAT+TGG | 0.360734 | 4.2:+86562836 | MS.gene33464:intron |
| GATTGGGCAACCTGATTTCT+GGG | 0.372109 | 4.2:+86562853 | MS.gene33464:CDS |
| CAGTTGTTTCTCGGTTTAAT+CGG | 0.374617 | 4.2:+86560475 | MS.gene33464:CDS |
| CATTATGACCTTCTGTTATG+AGG | 0.384606 | 4.2:+86563507 | MS.gene33464:CDS |
| CTCATAACAGAAGGTCATAA+TGG | 0.393100 | 4.2:-86563506 | None:intergenic |
| GCAGCATAGAGGCGGTGGTC+GGG | 0.413029 | 4.2:+86563392 | MS.gene33464:intron |
| ACGGTGTCTGTTTCGTGCTC+TGG | 0.421987 | 4.2:+86561758 | MS.gene33464:CDS |
| GGGAGGAGAATCAGAACTAT+TGG | 0.442300 | 4.2:+86562874 | MS.gene33464:CDS |
| AATTCAAGCTTATTTGGTGT+TGG | 0.442709 | 4.2:+86560498 | MS.gene33464:CDS |
| TTTAAATTCACTTCCATACT+CGG | 0.461333 | 4.2:-86563436 | None:intergenic |
| ATTCTTAAGCAGTTGAAAGA+TGG | 0.469119 | 4.2:+86560414 | MS.gene33464:CDS |
| ATCAACCGTGACGGCAATGA+TGG | 0.474613 | 4.2:-86562709 | None:intergenic |
| TTAAGGCATACCTCATGCTC+TGG | 0.476452 | 4.2:-86563264 | None:intergenic |
| CAGCATAGAGGCGGTGGTCG+GGG | 0.476465 | 4.2:+86563393 | MS.gene33464:intron |
| ATTTGAGATTGTTTCTTCAC+CGG | 0.481993 | 4.2:+86560446 | MS.gene33464:CDS |
| CGAGAAACAACTGAAGCAAC+CGG | 0.497549 | 4.2:-86560465 | None:intergenic |
| TCTAAAACACACCGTTGTAA+AGG | 0.503080 | 4.2:-86562735 | None:intergenic |
| TCACTTCCATACTCGGCAAT+CGG | 0.507697 | 4.2:-86563429 | None:intergenic |
| TAACACAGATGAACTAAGAA+TGG | 0.521962 | 4.2:+86562632 | MS.gene33464:intron |
| CAAAGGAATGGCTCACAACA+AGG | 0.527955 | 4.2:+86562331 | MS.gene33464:CDS |
| GAAGCTATATGTGAAAATGT+AGG | 0.546789 | 4.2:+86562663 | MS.gene33464:CDS |
| TGCAGCATAGAGGCGGTGGT+CGG | 0.570182 | 4.2:+86563391 | MS.gene33464:intron |
| GTTCGATGAAATCAGGTCAA+AGG | 0.573936 | 4.2:+86562314 | MS.gene33464:intron |
| GGGCAACCTGATTTCTGGGG+AGG | 0.583375 | 4.2:+86562857 | MS.gene33464:CDS |
| ATGAAATCAGGTCAAAGGAA+TGG | 0.584616 | 4.2:+86562319 | MS.gene33464:intron |
| AGAAGCCATCATTGCCGTCA+CGG | 0.595204 | 4.2:+86562704 | MS.gene33464:CDS |
| AATGGCTCACAACAAGGGAA+TGG | 0.600900 | 4.2:+86562337 | MS.gene33464:CDS |
| AAAATGCAGCATAGAGGCGG+TGG | 0.608132 | 4.2:+86563387 | MS.gene33464:intron |
| GTTCAGAAGGTTACAGGCGA+CGG | 0.614816 | 4.2:+86561735 | MS.gene33464:CDS |
| TTTGCTGCAGTTACTGCAGG+CGG | 0.617614 | 4.2:+86562831 | MS.gene33464:intron |
| ATACAATTCCTCATAACAGA+AGG | 0.623406 | 4.2:-86563515 | None:intergenic |
| CGCGAGGAGAGAGAAAATGC+AGG | 0.629042 | 4.2:+86562371 | MS.gene33464:CDS |
| TGTGTACATACCAGAGCATG+AGG | 0.636499 | 4.2:+86563254 | MS.gene33464:CDS |
| AGAAGGTTACAGGCGACGGA+CGG | 0.652941 | 4.2:+86561739 | MS.gene33464:CDS |
| ATTGGGCAACCTGATTTCTG+GGG | 0.653227 | 4.2:+86562854 | MS.gene33464:CDS |
| TAAAGGCTCATCAACCGTGA+CGG | 0.660842 | 4.2:-86562718 | None:intergenic |
| AAAGGAATGGCTCACAACAA+GGG | 0.664021 | 4.2:+86562332 | MS.gene33464:CDS |
| ATGGCGCAAAAGCTTCTCAA+CGG | 0.671372 | 4.2:+86560283 | MS.gene33464:CDS |
| AATGGCTCTTAACCAACGCG+AGG | 0.698050 | 4.2:+86562355 | MS.gene33464:CDS |
| CGGTTGATGAGCCTTTACAA+CGG | 0.717115 | 4.2:+86562724 | MS.gene33464:CDS |
| GCTGTGAGGCTATTGTTCAG+CGG | 0.720718 | 4.2:+86563477 | MS.gene33464:CDS |
| GTTCTAGCAGAAAAGCTGTG+AGG | 0.757620 | 4.2:+86563463 | MS.gene33464:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTAATTTCACTTTTTT+GGG | + | chr4.2:86560595-86560614 | MS.gene33464:intron | 10.0% |
| !! | ATAAAAATAAAAAGATACGA+AGG | - | chr4.2:86562535-86562554 | None:intergenic | 15.0% |
| !! | ATTAAGAAAATAGTTCAAAT+TGG | - | chr4.2:86561622-86561641 | None:intergenic | 15.0% |
| !!! | AAACTAAGTATTGTTTTTTA+AGG | - | chr4.2:86563284-86563303 | None:intergenic | 15.0% |
| !!! | AATCTTTTTTATCTTTTGTT+GGG | + | chr4.2:86561449-86561468 | MS.gene33464:intron | 15.0% |
| !!! | AGTTGTTCAAATTAATTTTA+GGG | + | chr4.2:86562275-86562294 | MS.gene33464:intron | 15.0% |
| !!! | ATTCAGTTAAAAGTAATTTT+CGG | - | chr4.2:86563132-86563151 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTAATAAGCTTC+TGG | + | chr4.2:86561960-86561979 | MS.gene33464:intron | 15.0% |
| !!! | CTTTATTAATTTCACTTTTT+TGG | + | chr4.2:86560594-86560613 | MS.gene33464:intron | 15.0% |
| !!! | TAATAAAGATTGAATTTTGT+TGG | - | chr4.2:86560582-86560601 | None:intergenic | 15.0% |
| !!! | TAATCTTTTTTATCTTTTGT+TGG | + | chr4.2:86561448-86561467 | MS.gene33464:intron | 15.0% |
| !! | ACTAAATAGAGTTTCTTATT+TGG | + | chr4.2:86562947-86562966 | MS.gene33464:intron | 20.0% |
| !! | ACTAACAAAAGATATACTAA+AGG | + | chr4.2:86561335-86561354 | MS.gene33464:intron | 20.0% |
| !! | ATTAGCAGTGTTAAAAAATT+AGG | - | chr4.2:86560348-86560367 | None:intergenic | 20.0% |
| !! | TATGGAAGTGAATTTAAAAA+GGG | + | chr4.2:86563441-86563460 | MS.gene33464:CDS | 20.0% |
| !! | TTATAAGTTTGATTAATCCA+GGG | - | chr4.2:86561029-86561048 | None:intergenic | 20.0% |
| !! | TTTATAAGTTTGATTAATCC+AGG | - | chr4.2:86561030-86561049 | None:intergenic | 20.0% |
| !! | TTTGTATTTAATGCAAAGAT+TGG | + | chr4.2:86562799-86562818 | MS.gene33464:intron | 20.0% |
| !!! | AGATCTTAATTTTCTGTTAA+TGG | - | chr4.2:86562763-86562782 | None:intergenic | 20.0% |
| !!! | GAGTTGTTCAAATTAATTTT+AGG | + | chr4.2:86562274-86562293 | MS.gene33464:intron | 20.0% |
| !!! | GGTCTATCTAATATTTTATA+AGG | + | chr4.2:86563312-86563331 | MS.gene33464:intron | 20.0% |
| !!! | GTCATTTTCTCAAAATTTAT+CGG | - | chr4.2:86561196-86561215 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTGATACATTCA+AGG | + | chr4.2:86561364-86561383 | MS.gene33464:intron | 20.0% |
| ! | AAAGTGAATGGGAAAAATAA+AGG | - | chr4.2:86562574-86562593 | None:intergenic | 25.0% |
| ! | AACAGAAAATTAAGATCTTG+AGG | + | chr4.2:86562765-86562784 | MS.gene33464:intron | 25.0% |
| ! | GAAATGAAAACAAAGTGAAT+GGG | - | chr4.2:86562585-86562604 | None:intergenic | 25.0% |
| ! | GTATGGAAGTGAATTTAAAA+AGG | + | chr4.2:86563440-86563459 | MS.gene33464:CDS | 25.0% |
| ! | TACATCAATTGGATTAAAGA+CGG | - | chr4.2:86562169-86562188 | None:intergenic | 25.0% |
| ! | TGAAAGCAAAACAAACAAAA+GGG | - | chr4.2:86562435-86562454 | None:intergenic | 25.0% |
| ! | TGGGAAAAATAAAGGTTATA+AGG | - | chr4.2:86562566-86562585 | None:intergenic | 25.0% |
| ! | TTTAAATTCACTTCCATACT+CGG | - | chr4.2:86563439-86563458 | None:intergenic | 25.0% |
| ! | TTTGCATGAATGTGTAATTA+GGG | + | chr4.2:86560656-86560675 | MS.gene33464:intron | 25.0% |
| !! | CAATACTTAGTTTGATCATT+TGG | + | chr4.2:86563291-86563310 | MS.gene33464:intron | 25.0% |
| !! | GGTGAATAAATCTAAAACAA+AGG | - | chr4.2:86561802-86561821 | None:intergenic | 25.0% |
| !! | TTTGTTAGTGATAATTTGCA+TGG | - | chr4.2:86561324-86561343 | None:intergenic | 25.0% |
| !!! | ACAATCATTTTGATCCATAA+AGG | - | chr4.2:86561412-86561431 | None:intergenic | 25.0% |
| !!! | CAAATTAATTTTAGGGTAAG+CGG | + | chr4.2:86562282-86562301 | MS.gene33464:intron | 25.0% |
| AAACTAAAAATGCAGCATAG+AGG | + | chr4.2:86563381-86563400 | MS.gene33464:intron | 30.0% | |
| AATAGGTTGTTAATCCAAAC+AGG | + | chr4.2:86560885-86560904 | MS.gene33464:intron | 30.0% | |
| AATCGGAATTCAAGCTTATT+TGG | + | chr4.2:86560492-86560511 | MS.gene33464:CDS | 30.0% | |
| ACCACATCTAAGTACTAAAA+TGG | - | chr4.2:86560989-86561008 | None:intergenic | 30.0% | |
| AGAAACTCTATTTAGTCCTT+AGG | - | chr4.2:86562943-86562962 | None:intergenic | 30.0% | |
| AGCAAGAATCAGAAAACAAA+AGG | - | chr4.2:86560935-86560954 | None:intergenic | 30.0% | |
| ATAAAAATAAGCCTCCTGTT+TGG | - | chr4.2:86560902-86560921 | None:intergenic | 30.0% | |
| ATTCTTAAGCAGTTGAAAGA+TGG | + | chr4.2:86560414-86560433 | MS.gene33464:CDS | 30.0% | |
| CACAGAAAACATTATCAAGT+AGG | + | chr4.2:86562039-86562058 | MS.gene33464:intron | 30.0% | |
| CTAATTACACATTCATGCAA+AGG | - | chr4.2:86560657-86560676 | None:intergenic | 30.0% | |
| CTGAAAACATCTTATAAGCA+GGG | - | chr4.2:86560742-86560761 | None:intergenic | 30.0% | |
| CTGAAAGCAAAACAAACAAA+AGG | - | chr4.2:86562436-86562455 | None:intergenic | 30.0% | |
| CTTTGCATGAATGTGTAATT+AGG | + | chr4.2:86560655-86560674 | MS.gene33464:intron | 30.0% | |
| GAAAGCAAAACAAACAAAAG+GGG | - | chr4.2:86562434-86562453 | None:intergenic | 30.0% | |
| GAAGCTATATGTGAAAATGT+AGG | + | chr4.2:86562663-86562682 | MS.gene33464:CDS | 30.0% | |
| GACATAAAATCAAGCCTTTA+TGG | + | chr4.2:86561395-86561414 | MS.gene33464:intron | 30.0% | |
| GATATACTAGCAATAAGACA+TGG | + | chr4.2:86562400-86562419 | MS.gene33464:intron | 30.0% | |
| GCTGAAAAAGAAAACTATCT+TGG | - | chr4.2:86560783-86560802 | None:intergenic | 30.0% | |
| GGAAATGAAAACAAAGTGAA+TGG | - | chr4.2:86562586-86562605 | None:intergenic | 30.0% | |
| TAACACAGATGAACTAAGAA+TGG | + | chr4.2:86562632-86562651 | MS.gene33464:intron | 30.0% | |
| TAATTAGGGTCTCTTTGAAT+TGG | + | chr4.2:86560670-86560689 | MS.gene33464:intron | 30.0% | |
| TAGTTCATCTGTGTTATCAT+GGG | - | chr4.2:86562628-86562647 | None:intergenic | 30.0% | |
| TCTGGTATGTACACAATAAT+TGG | - | chr4.2:86563249-86563268 | None:intergenic | 30.0% | |
| TTAGTTCATCTGTGTTATCA+TGG | - | chr4.2:86562629-86562648 | None:intergenic | 30.0% | |
| TTCAATGTAATCACAAGTGT+CGG | + | chr4.2:86561220-86561239 | MS.gene33464:intron | 30.0% | |
| TTCTCAAAATTTATCGGTGT+TGG | - | chr4.2:86561190-86561209 | None:intergenic | 30.0% | |
| TTGTGCTATAAGCTGAAAAT+AGG | + | chr4.2:86560868-86560887 | MS.gene33464:intron | 30.0% | |
| TTTGTTTAGACTGACAGATT+TGG | - | chr4.2:86562201-86562220 | None:intergenic | 30.0% | |
| ! | ATTTGAGATTGTTTCTTCAC+CGG | + | chr4.2:86560446-86560465 | MS.gene33464:CDS | 30.0% |
| ! | CTTCTGTTGATTATGAAACA+CGG | + | chr4.2:86561129-86561148 | MS.gene33464:intron | 30.0% |
| ! | TTTTAGTACTTAGATGTGGT+AGG | + | chr4.2:86560989-86561008 | MS.gene33464:intron | 30.0% |
| ! | TTTTCTGTGGCTATTAATCT+GGG | - | chr4.2:86562028-86562047 | None:intergenic | 30.0% |
| !! | AATTCAAGCTTATTTGGTGT+TGG | + | chr4.2:86560498-86560517 | MS.gene33464:CDS | 30.0% |
| !! | ACCATTTTAGTACTTAGATG+TGG | + | chr4.2:86560985-86561004 | MS.gene33464:intron | 30.0% |
| !! | CGTTGATAGTGTTGAATATA+AGG | + | chr4.2:86561530-86561549 | MS.gene33464:intron | 30.0% |
| !!! | CGGTCTTTTAAAATTCACAT+CGG | - | chr4.2:86563052-86563071 | None:intergenic | 30.0% |
| !!! | CTACTTGATAATGTTTTCTG+TGG | - | chr4.2:86562041-86562060 | None:intergenic | 30.0% |
| !!! | GTGATAAAGCTACTTTTCTT+AGG | - | chr4.2:86561591-86561610 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTGCTTTCAGTTA+AGG | + | chr4.2:86562439-86562458 | MS.gene33464:intron | 30.0% |
| AAAATCTAACTCCAGAATCG+AGG | - | chr4.2:86561937-86561956 | None:intergenic | 35.0% | |
| AAAGAATATGGACATTGGTC+GGG | - | chr4.2:86563199-86563218 | None:intergenic | 35.0% | |
| ACCAATGTCCATATTCTTTC+AGG | + | chr4.2:86563200-86563219 | MS.gene33464:intron | 35.0% | |
| ACCTGAAAGAATATGGACAT+TGG | - | chr4.2:86563204-86563223 | None:intergenic | 35.0% | |
| AGATACGAAGGTAAGTATCT+CGG | - | chr4.2:86562523-86562542 | None:intergenic | 35.0% | |
| AGGAGATAATAATGCAAGCA+TGG | - | chr4.2:86562923-86562942 | None:intergenic | 35.0% | |
| ATAGTTCAAATTGGACTCAC+TGG | - | chr4.2:86561613-86561632 | None:intergenic | 35.0% | |
| ATCATTGAATGTGTCTATCG+TGG | + | chr4.2:86561052-86561071 | MS.gene33464:intron | 35.0% | |
| ATGAAATCAGGTCAAAGGAA+TGG | + | chr4.2:86562319-86562338 | MS.gene33464:intron | 35.0% | |
| ATTTGAACAACTCGCTATTG+TGG | - | chr4.2:86562267-86562286 | None:intergenic | 35.0% | |
| GAAAGAATATGGACATTGGT+CGG | - | chr4.2:86563200-86563219 | None:intergenic | 35.0% | |
| GAATTCTGATGAGTTGTGTT+TGG | + | chr4.2:86561648-86561667 | MS.gene33464:intron | 35.0% | |
| GCTGAAAACATCTTATAAGC+AGG | - | chr4.2:86560743-86560762 | None:intergenic | 35.0% | |
| GCTTGCATTATTATCTCCTA+AGG | + | chr4.2:86562924-86562943 | MS.gene33464:intron | 35.0% | |
| GGCAAGTCAAAACATAGAAA+AGG | - | chr4.2:86562607-86562626 | None:intergenic | 35.0% | |
| TGAATTCATGTGAAAACCCT+GGG | + | chr4.2:86563158-86563177 | MS.gene33464:intron | 35.0% | |
| TGACAGTACCTGAAAGAATA+TGG | - | chr4.2:86563211-86563230 | None:intergenic | 35.0% | |
| ! | AACGTGTGTATGTAGTTTTC+CGG | + | chr4.2:86562484-86562503 | MS.gene33464:intron | 35.0% |
| ! | GACATGAATTTTCATTCCCA+GGG | - | chr4.2:86563177-86563196 | None:intergenic | 35.0% |
| ! | GTTTTCTGTGGCTATTAATC+TGG | - | chr4.2:86562029-86562048 | None:intergenic | 35.0% |
| ! | TCTAAAACACACCGTTGTAA+AGG | - | chr4.2:86562738-86562757 | None:intergenic | 35.0% |
| ! | TTTTCAGTTCAGAAGGTTAC+AGG | + | chr4.2:86561729-86561748 | MS.gene33464:CDS | 35.0% |
| !! | CAGTTGTTTCTCGGTTTAAT+CGG | + | chr4.2:86560475-86560494 | MS.gene33464:CDS | 35.0% |
| !! | GTTTCATCTGTTGACTCATT+CGG | - | chr4.2:86563072-86563091 | None:intergenic | 35.0% |
| !!! | ACTCACTTTTTCGCTAGAAT+TGG | + | chr4.2:86560531-86560550 | MS.gene33464:CDS | 35.0% |
| !!! | AGGCTTATTTTTATACCCCA+CGG | + | chr4.2:86560908-86560927 | MS.gene33464:intron | 35.0% |
| AAAGGAATGGCTCACAACAA+GGG | + | chr4.2:86562332-86562351 | MS.gene33464:CDS | 40.0% | |
| AGCTTATCTACTGCTATGAC+TGG | + | chr4.2:86560701-86560720 | MS.gene33464:intron | 40.0% | |
| AGGTTGTTAATCCAAACAGG+AGG | + | chr4.2:86560888-86560907 | MS.gene33464:intron | 40.0% | |
| CTAAAAATGCAGCATAGAGG+CGG | + | chr4.2:86563384-86563403 | MS.gene33464:intron | 40.0% | |
| CTGAATTCATGTGAAAACCC+TGG | + | chr4.2:86563157-86563176 | MS.gene33464:intron | 40.0% | |
| GACATTTGAATCCTCAGACT+CGG | + | chr4.2:86560377-86560396 | MS.gene33464:intron | 40.0% | |
| GCTCAGCTACATAACTGAAA+AGG | - | chr4.2:86561823-86561842 | None:intergenic | 40.0% | |
| GGTGAGACTGATACATCAAT+TGG | - | chr4.2:86562180-86562199 | None:intergenic | 40.0% | |
| GTGGAAGCTCAAACTAATGA+AGG | - | chr4.2:86562248-86562267 | None:intergenic | 40.0% | |
| GTTCGATGAAATCAGGTCAA+AGG | + | chr4.2:86562314-86562333 | MS.gene33464:intron | 40.0% | |
| TTCTCCTTATGTTCTCACAG+TGG | + | chr4.2:86561672-86561691 | MS.gene33464:intron | 40.0% | |
| ! | GGACATGAATTTTCATTCCC+AGG | - | chr4.2:86563178-86563197 | None:intergenic | 40.0% |
| ! | TATTTTGCTGCAGTTACTGC+AGG | + | chr4.2:86562828-86562847 | MS.gene33464:intron | 40.0% |
| ! | TGAACGCTTTTCAGTTCAGA+AGG | + | chr4.2:86561722-86561741 | MS.gene33464:CDS | 40.0% |
| !! | ACAGTTGGTTCGATGAAATC+AGG | + | chr4.2:86562307-86562326 | MS.gene33464:intron | 40.0% |
| !! | AGACGGATTGTGTCATTAGA+TGG | - | chr4.2:86562152-86562171 | None:intergenic | 40.0% |
| !!! | GGCTTATTTTTATACCCCAC+GGG | + | chr4.2:86560909-86560928 | MS.gene33464:intron | 40.0% |
| AATGGCTCACAACAAGGGAA+TGG | + | chr4.2:86562337-86562356 | MS.gene33464:CDS | 45.0% | |
| ACCAACAGACTTTGTTGCAC+CGG | - | chr4.2:86561292-86561311 | None:intergenic | 45.0% | |
| ATCAGAAAACAAAAGGCCCG+TGG | - | chr4.2:86560928-86560947 | None:intergenic | 45.0% | |
| ATCATCATTCTCCGAGTCTG+AGG | - | chr4.2:86560391-86560410 | None:intergenic | 45.0% | |
| ATGAAACACGGACACAGACT+CGG | + | chr4.2:86561141-86561160 | MS.gene33464:intron | 45.0% | |
| ATGGCGCAAAAGCTTCTCAA+CGG | + | chr4.2:86560283-86560302 | MS.gene33464:CDS | 45.0% | |
| ATTGGGCAACCTGATTTCTG+GGG | + | chr4.2:86562854-86562873 | MS.gene33464:CDS | 45.0% | |
| CAAAGGAATGGCTCACAACA+AGG | + | chr4.2:86562331-86562350 | MS.gene33464:CDS | 45.0% | |
| CGAGAAACAACTGAAGCAAC+CGG | - | chr4.2:86560468-86560487 | None:intergenic | 45.0% | |
| CTATTTGCCTCAATGCCTGA+GGG | + | chr4.2:86561488-86561507 | MS.gene33464:intron | 45.0% | |
| GATTGGGCAACCTGATTTCT+GGG | + | chr4.2:86562853-86562872 | MS.gene33464:CDS | 45.0% | |
| GGGAGGAGAATCAGAACTAT+TGG | + | chr4.2:86562874-86562893 | MS.gene33464:CDS | 45.0% | |
| GTTCTAGCAGAAAAGCTGTG+AGG | + | chr4.2:86563463-86563482 | MS.gene33464:CDS | 45.0% | |
| TAAAGGCTCATCAACCGTGA+CGG | - | chr4.2:86562721-86562740 | None:intergenic | 45.0% | |
| TATTTGCCTCAATGCCTGAG+GGG | + | chr4.2:86561489-86561508 | MS.gene33464:intron | 45.0% | |
| TCACTTCCATACTCGGCAAT+CGG | - | chr4.2:86563432-86563451 | None:intergenic | 45.0% | |
| TCAGAAAACAAAAGGCCCGT+GGG | - | chr4.2:86560927-86560946 | None:intergenic | 45.0% | |
| TCCACCACTGTGAGAACATA+AGG | - | chr4.2:86561679-86561698 | None:intergenic | 45.0% | |
| TCCTTATGTTCTCACAGTGG+TGG | + | chr4.2:86561675-86561694 | MS.gene33464:intron | 45.0% | |
| TCTATTTGCCTCAATGCCTG+AGG | + | chr4.2:86561487-86561506 | MS.gene33464:intron | 45.0% | |
| TCTCGGCTCAATAGTTGAAC+CGG | - | chr4.2:86562506-86562525 | None:intergenic | 45.0% | |
| TGTGTACATACCAGAGCATG+AGG | + | chr4.2:86563254-86563273 | MS.gene33464:CDS | 45.0% | |
| TTAAGGCATACCTCATGCTC+TGG | - | chr4.2:86563267-86563286 | None:intergenic | 45.0% | |
| TTAGGGTAAGCGGTAACAGT+TGG | + | chr4.2:86562292-86562311 | MS.gene33464:intron | 45.0% | |
| TTCAGTTATGTAGCTGAGCG+CGG | + | chr4.2:86561824-86561843 | MS.gene33464:intron | 45.0% | |
| TTCATTCCGATTGCCGAGTA+TGG | + | chr4.2:86563423-86563442 | MS.gene33464:CDS | 45.0% | |
| TTGTTCAACTGCCTCGATTC+TGG | + | chr4.2:86561923-86561942 | MS.gene33464:intron | 45.0% | |
| ! | AGGTGATGATGTATAGTCCC+TGG | + | chr4.2:86561009-86561028 | MS.gene33464:intron | 45.0% |
| !! | CGGTTGATGAGCCTTTACAA+CGG | + | chr4.2:86562724-86562743 | MS.gene33464:CDS | 45.0% |
| !! | CGGTTGCTTCAGTTGTTTCT+CGG | + | chr4.2:86560466-86560485 | MS.gene33464:CDS | 45.0% |
| !! | CTGTAATTCTGAAACCCCTC+AGG | - | chr4.2:86561506-86561525 | None:intergenic | 45.0% |
| !! | AAATATAAAAATTGATAAAA+AGG | - | chr4.2:86561871-86561890 | None:intergenic | 5.0% |
| AAAATGCAGCATAGAGGCGG+TGG | + | chr4.2:86563387-86563406 | MS.gene33464:intron | 50.0% | |
| AATGGCTCTTAACCAACGCG+AGG | + | chr4.2:86562355-86562374 | MS.gene33464:CDS | 50.0% | |
| AGAAGCCATCATTGCCGTCA+CGG | + | chr4.2:86562704-86562723 | MS.gene33464:CDS | 50.0% | |
| ATCAACCGTGACGGCAATGA+TGG | - | chr4.2:86562712-86562731 | None:intergenic | 50.0% | |
| CAGAAAACAAAAGGCCCGTG+GGG | - | chr4.2:86560926-86560945 | None:intergenic | 50.0% | |
| GATTCTCCTCCCCAGAAATC+AGG | - | chr4.2:86562866-86562885 | None:intergenic | 50.0% | |
| GCTGTGAGGCTATTGTTCAG+CGG | + | chr4.2:86563477-86563496 | MS.gene33464:CDS | 50.0% | |
| GGATTGGGCAACCTGATTTC+TGG | + | chr4.2:86562852-86562871 | MS.gene33464:CDS | 50.0% | |
| GTTCAGAAGGTTACAGGCGA+CGG | + | chr4.2:86561735-86561754 | MS.gene33464:CDS | 50.0% | |
| TCAGTTATGTAGCTGAGCGC+GGG | + | chr4.2:86561825-86561844 | MS.gene33464:intron | 50.0% | |
| TTTGCTGCAGTTACTGCAGG+CGG | + | chr4.2:86562831-86562850 | MS.gene33464:intron | 50.0% | |
| ! | CATTTTCTCTCTCCTCGCGT+TGG | - | chr4.2:86562370-86562389 | None:intergenic | 50.0% |
| !! | CACAAGTGTCGGTGTCTTGT+CGG | + | chr4.2:86561231-86561250 | MS.gene33464:intron | 50.0% |
| ACGGTGTCTGTTTCGTGCTC+TGG | + | chr4.2:86561758-86561777 | MS.gene33464:CDS | 55.0% | |
| AGAAGGTTACAGGCGACGGA+CGG | + | chr4.2:86561739-86561758 | MS.gene33464:CDS | 55.0% | |
| CGCGAGGAGAGAGAAAATGC+AGG | + | chr4.2:86562371-86562390 | MS.gene33464:CDS | 55.0% | |
| GCCGGTGCAACAAAGTCTGT+TGG | + | chr4.2:86561288-86561307 | MS.gene33464:intron | 55.0% | |
| TGCAGTTACTGCAGGCGGAT+TGG | + | chr4.2:86562836-86562855 | MS.gene33464:intron | 55.0% | |
| ! | CTGAAACCCCTCAGGCATTG+AGG | - | chr4.2:86561498-86561517 | None:intergenic | 55.0% |
| ! | GCAGTTACTGCAGGCGGATT+GGG | + | chr4.2:86562837-86562856 | MS.gene33464:intron | 55.0% |
| ! | TGTCGGTGTCTTGTCGGTGT+CGG | + | chr4.2:86561237-86561256 | MS.gene33464:intron | 55.0% |
| ACCAGGACACGCCTTCCATC+AGG | + | chr4.2:86561262-86561281 | MS.gene33464:intron | 60.0% | |
| ATGTAGCTGAGCGCGGGTTC+TGG | + | chr4.2:86561831-86561850 | MS.gene33464:intron | 60.0% | |
| TGCAGCATAGAGGCGGTGGT+CGG | + | chr4.2:86563391-86563410 | MS.gene33464:intron | 60.0% | |
| TGGCGTGTCAACGTCGTGTC+TGG | - | chr4.2:86561170-86561189 | None:intergenic | 60.0% | |
| ! | ACGCCTTCCATCAGGAGTGC+CGG | + | chr4.2:86561270-86561289 | MS.gene33464:intron | 60.0% |
| ! | GGGCAACCTGATTTCTGGGG+AGG | + | chr4.2:86562857-86562876 | MS.gene33464:CDS | 60.0% |
| ! | TCCTGATGGAAGGCGTGTCC+TGG | - | chr4.2:86561266-86561285 | None:intergenic | 60.0% |
| ! | TGTTGCACCGGCACTCCTGA+TGG | - | chr4.2:86561280-86561299 | None:intergenic | 60.0% |
| !! | TCTTGTCGGTGTCGGACACC+AGG | + | chr4.2:86561245-86561264 | MS.gene33464:intron | 60.0% |
| CAGCATAGAGGCGGTGGTCG+GGG | + | chr4.2:86563393-86563412 | MS.gene33464:intron | 65.0% | |
| GCAGCATAGAGGCGGTGGTC+GGG | + | chr4.2:86563392-86563411 | MS.gene33464:intron | 65.0% | |
| ! | AGCTGAGCGCGGGTTCTGGT+TGG | + | chr4.2:86561835-86561854 | MS.gene33464:intron | 65.0% |
| ! | GCACCGGCACTCCTGATGGA+AGG | - | chr4.2:86561276-86561295 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 86560283 | 86563527 | 86560283 | ID=MS.gene33464 |
| chr4.2 | mRNA | 86560283 | 86563527 | 86560283 | ID=MS.gene33464.t1;Parent=MS.gene33464 |
| chr4.2 | exon | 86560283 | 86560304 | 86560283 | ID=MS.gene33464.t1.exon1;Parent=MS.gene33464.t1 |
| chr4.2 | CDS | 86560283 | 86560304 | 86560283 | ID=cds.MS.gene33464.t1;Parent=MS.gene33464.t1 |
| chr4.2 | exon | 86560394 | 86560562 | 86560394 | ID=MS.gene33464.t1.exon2;Parent=MS.gene33464.t1 |
| chr4.2 | CDS | 86560394 | 86560562 | 86560394 | ID=cds.MS.gene33464.t1;Parent=MS.gene33464.t1 |
| chr4.2 | exon | 86561692 | 86561779 | 86561692 | ID=MS.gene33464.t1.exon3;Parent=MS.gene33464.t1 |
| chr4.2 | CDS | 86561692 | 86561779 | 86561692 | ID=cds.MS.gene33464.t1;Parent=MS.gene33464.t1 |
| chr4.2 | exon | 86562329 | 86562392 | 86562329 | ID=MS.gene33464.t1.exon4;Parent=MS.gene33464.t1 |
| chr4.2 | CDS | 86562329 | 86562392 | 86562329 | ID=cds.MS.gene33464.t1;Parent=MS.gene33464.t1 |
| chr4.2 | exon | 86562640 | 86562745 | 86562640 | ID=MS.gene33464.t1.exon5;Parent=MS.gene33464.t1 |
| chr4.2 | CDS | 86562640 | 86562745 | 86562640 | ID=cds.MS.gene33464.t1;Parent=MS.gene33464.t1 |
| chr4.2 | exon | 86562841 | 86562895 | 86562841 | ID=MS.gene33464.t1.exon6;Parent=MS.gene33464.t1 |
| chr4.2 | CDS | 86562841 | 86562895 | 86562841 | ID=cds.MS.gene33464.t1;Parent=MS.gene33464.t1 |
| chr4.2 | exon | 86563222 | 86563275 | 86563222 | ID=MS.gene33464.t1.exon7;Parent=MS.gene33464.t1 |
| chr4.2 | CDS | 86563222 | 86563275 | 86563222 | ID=cds.MS.gene33464.t1;Parent=MS.gene33464.t1 |
| chr4.2 | exon | 86563396 | 86563527 | 86563396 | ID=MS.gene33464.t1.exon8;Parent=MS.gene33464.t1 |
| chr4.2 | CDS | 86563396 | 86563527 | 86563396 | ID=cds.MS.gene33464.t1;Parent=MS.gene33464.t1 |
| Gene Sequence |
| Protein sequence |
