Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34453.t1 | XP_003592309.1 | 71.7 | 237 | 8 | 1 | 1 | 178 | 1 | 237 | 1.90E-83 | 318.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34453.t1 | Q0WUQ1 | 49.8 | 215 | 48 | 2 | 24 | 178 | 41 | 255 | 3.8e-48 | 192.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34453.t1 | G7IAQ7 | 71.7 | 237 | 8 | 1 | 1 | 178 | 1 | 237 | 1.4e-83 | 318.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene34453 | 0.826775 | 2.25E-54 | -1.69E-46 |
| MS.gene04915 | MS.gene34453 | 0.835573 | 1.55E-56 | -1.69E-46 |
| MS.gene04917 | MS.gene34453 | 0.837891 | 3.98E-57 | -1.69E-46 |
| MS.gene049368 | MS.gene34453 | 0.816767 | 4.67E-52 | -1.69E-46 |
| MS.gene049786 | MS.gene34453 | 0.802196 | 6.29E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene34453 | 0.824137 | 9.50E-54 | -1.69E-46 |
| MS.gene049887 | MS.gene34453 | 0.827007 | 1.98E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene34453 | 0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene050224 | MS.gene34453 | 0.813975 | 1.95E-51 | -1.69E-46 |
| MS.gene050359 | MS.gene34453 | 0.838178 | 3.36E-57 | -1.69E-46 |
| MS.gene050414 | MS.gene34453 | 0.816759 | 4.69E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene34453 | 0.808858 | 2.52E-50 | -1.69E-46 |
| MS.gene050556 | MS.gene34453 | 0.821088 | 4.86E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene34453 | 0.80241 | 5.69E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene34453 | 0.826904 | 2.10E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene34453 | 0.818023 | 2.43E-52 | -1.69E-46 |
| MS.gene050931 | MS.gene34453 | 0.808498 | 3.01E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene34453 | 0.822543 | 2.24E-53 | -1.69E-46 |
| MS.gene051102 | MS.gene34453 | 0.824758 | 6.79E-54 | -1.69E-46 |
| MS.gene051184 | MS.gene34453 | 0.816304 | 5.93E-52 | -1.69E-46 |
| MS.gene051852 | MS.gene34453 | 0.852623 | 4.09E-61 | -1.69E-46 |
| MS.gene052016 | MS.gene34453 | 0.828849 | 7.15E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene34453 | 0.855851 | 4.78E-62 | -1.69E-46 |
| MS.gene052335 | MS.gene34453 | 0.818883 | 1.55E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene34453 | 0.825764 | 3.92E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene34453 | 0.833583 | 4.91E-56 | -1.69E-46 |
| MS.gene052516 | MS.gene34453 | 0.821637 | 3.63E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene34453 | 0.85015 | 2.04E-60 | -1.69E-46 |
| MS.gene052932 | MS.gene34453 | 0.804183 | 2.44E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene34453 | 0.825461 | 4.63E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene34453 | 0.839698 | 1.36E-57 | -1.69E-46 |
| MS.gene053144 | MS.gene34453 | 0.801465 | 8.89E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene34453 | 0.803954 | 2.72E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene34453 | 0.812052 | 5.15E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene34453 | 0.817638 | 2.97E-52 | -1.69E-46 |
| MS.gene054824 | MS.gene34453 | 0.812269 | 4.62E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene34453 | 0.810327 | 1.22E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene34453 | 0.803462 | 3.45E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene34453 | 0.801494 | 8.77E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene34453 | 0.846326 | 2.33E-59 | -1.69E-46 |
| MS.gene055513 | MS.gene34453 | 0.847911 | 8.57E-60 | -1.69E-46 |
| MS.gene05574 | MS.gene34453 | 0.800308 | 1.53E-48 | -1.69E-46 |
| MS.gene055864 | MS.gene34453 | 0.825212 | 5.30E-54 | -1.69E-46 |
| MS.gene056181 | MS.gene34453 | 0.839894 | 1.21E-57 | -1.69E-46 |
| MS.gene056285 | MS.gene34453 | 0.821094 | 4.85E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene34453 | 0.8213 | 4.34E-53 | -1.69E-46 |
| MS.gene056390 | MS.gene34453 | 0.811674 | 6.22E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene34453 | 0.809784 | 1.59E-50 | -1.69E-46 |
| MS.gene056522 | MS.gene34453 | -0.810201 | 1.30E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene34453 | 0.802482 | 5.49E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene34453 | 0.839625 | 1.42E-57 | -1.69E-46 |
| MS.gene058639 | MS.gene34453 | 0.839541 | 1.49E-57 | -1.69E-46 |
| MS.gene058647 | MS.gene34453 | 0.821815 | 3.30E-53 | -1.69E-46 |
| MS.gene058720 | MS.gene34453 | 0.818251 | 2.16E-52 | -1.69E-46 |
| MS.gene058758 | MS.gene34453 | 0.857779 | 1.29E-62 | -1.69E-46 |
| MS.gene059170 | MS.gene34453 | 0.846918 | 1.61E-59 | -1.69E-46 |
| MS.gene059171 | MS.gene34453 | 0.819392 | 1.19E-52 | -1.69E-46 |
| MS.gene059713 | MS.gene34453 | 0.821849 | 3.24E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene34453 | 0.836509 | 8.97E-57 | -1.69E-46 |
| MS.gene060122 | MS.gene34453 | -0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene060400 | MS.gene34453 | 0.814703 | 1.35E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene34453 | 0.832893 | 7.29E-56 | -1.69E-46 |
| MS.gene060563 | MS.gene34453 | 0.837447 | 5.17E-57 | -1.69E-46 |
| MS.gene060637 | MS.gene34453 | 0.80406 | 2.59E-49 | -1.69E-46 |
| MS.gene060870 | MS.gene34453 | 0.80234 | 5.88E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene34453 | 0.852273 | 5.14E-61 | -1.69E-46 |
| MS.gene061006 | MS.gene34453 | 0.857775 | 1.30E-62 | -1.69E-46 |
| MS.gene061100 | MS.gene34453 | 0.841726 | 3.99E-58 | -1.69E-46 |
| MS.gene061205 | MS.gene34453 | 0.813171 | 2.93E-51 | -1.69E-46 |
| MS.gene06121 | MS.gene34453 | 0.802468 | 5.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34453.t1 | MTR_1g101440 | 69.298 | 228 | 11 | 2 | 1 | 169 | 1 | 228 | 1.52e-103 | 300 |
| MS.gene34453.t1 | MTR_0086s0010 | 66.197 | 142 | 36 | 1 | 1 | 130 | 1 | 142 | 2.85e-62 | 196 |
| MS.gene34453.t1 | MTR_0086s0010 | 92.308 | 39 | 3 | 0 | 127 | 165 | 198 | 236 | 3.45e-16 | 75.1 |
| MS.gene34453.t1 | MTR_4g102740 | 41.706 | 211 | 62 | 3 | 18 | 169 | 28 | 236 | 2.80e-45 | 150 |
| MS.gene34453.t1 | MTR_2g018860 | 32.394 | 213 | 82 | 4 | 17 | 170 | 25 | 234 | 6.14e-31 | 112 |
| MS.gene34453.t1 | MTR_6g022020 | 40.909 | 110 | 61 | 1 | 21 | 130 | 37 | 142 | 3.61e-25 | 95.5 |
| MS.gene34453.t1 | MTR_6g022040 | 40.000 | 110 | 61 | 1 | 21 | 130 | 35 | 139 | 9.67e-25 | 94.4 |
| MS.gene34453.t1 | MTR_7g069610 | 37.398 | 123 | 75 | 2 | 6 | 127 | 2 | 123 | 1.14e-24 | 95.9 |
| MS.gene34453.t1 | MTR_4g017810 | 42.697 | 89 | 51 | 0 | 39 | 127 | 19 | 107 | 1.50e-18 | 80.5 |
| MS.gene34453.t1 | MTR_2g018860 | 28.177 | 181 | 69 | 4 | 51 | 170 | 12 | 192 | 5.24e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34453.t1 | AT5G62100 | 42.411 | 224 | 60 | 4 | 1 | 165 | 1 | 214 | 8.12e-48 | 157 |
| MS.gene34453.t1 | AT5G62100 | 56.296 | 135 | 49 | 2 | 1 | 135 | 1 | 125 | 1.27e-47 | 152 |
| MS.gene34453.t1 | AT5G62100 | 56.296 | 135 | 49 | 2 | 1 | 135 | 1 | 125 | 1.27e-47 | 152 |
| MS.gene34453.t1 | AT5G62100 | 56.296 | 135 | 49 | 2 | 1 | 135 | 1 | 125 | 5.80e-47 | 152 |
| MS.gene34453.t1 | AT5G62100 | 57.692 | 130 | 45 | 2 | 1 | 130 | 1 | 120 | 6.20e-47 | 152 |
| MS.gene34453.t1 | AT5G07220 | 60.000 | 130 | 44 | 3 | 1 | 128 | 1 | 124 | 8.88e-47 | 155 |
| MS.gene34453.t1 | AT5G62100 | 56.296 | 135 | 49 | 2 | 1 | 135 | 1 | 125 | 6.29e-45 | 150 |
| MS.gene34453.t1 | AT5G52060 | 65.789 | 114 | 38 | 1 | 22 | 134 | 39 | 152 | 1.84e-44 | 150 |
| MS.gene34453.t1 | AT5G14360 | 38.938 | 113 | 64 | 1 | 21 | 133 | 47 | 154 | 6.18e-24 | 92.4 |
| MS.gene34453.t1 | AT3G51780 | 33.488 | 215 | 73 | 6 | 22 | 166 | 10 | 224 | 9.29e-24 | 94.7 |
| MS.gene34453.t1 | AT5G40630 | 37.500 | 104 | 62 | 2 | 21 | 124 | 55 | 155 | 3.99e-21 | 85.1 |
Find 49 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGAGTTAAGGTTAAATT+TGG | 0.209267 | 1.2:+75770752 | MS.gene34453:CDS |
| AAAATGTTAACCGGTCCAAC+TGG | 0.346168 | 1.2:+75771324 | MS.gene34453:CDS |
| CTGAAAATTAAGAATTCTAA+TGG | 0.350736 | 1.2:+75772536 | MS.gene34453:CDS |
| CGAGTCTCGATCCGAGTCTA+AGG | 0.358675 | 1.2:-75770714 | None:intergenic |
| AAGGCATTTCTTGACATAGT+AGG | 0.386721 | 1.2:+75771399 | MS.gene34453:CDS |
| CCACTCCAAACCTCTAGGTT+CGG | 0.402186 | 1.2:-75770654 | None:intergenic |
| TCCACCGACAATTAGAGTTA+AGG | 0.402326 | 1.2:+75770742 | MS.gene34453:CDS |
| TACCTCTTCTCTTGAGCAAT+AGG | 0.407029 | 1.2:-75771459 | None:intergenic |
| ATTAGTTCACAAGCAACATT+TGG | 0.407228 | 1.2:+75770797 | MS.gene34453:CDS |
| ATGAATCAGTTTGCTTAAGT+TGG | 0.407562 | 1.2:+75771735 | MS.gene34453:intron |
| GGTTCCCGAACCTAGAGGTT+TGG | 0.408188 | 1.2:+75770649 | MS.gene34453:CDS |
| ACAAAAGTATGTTGAAACTT+TGG | 0.410750 | 1.2:+75772508 | MS.gene34453:CDS |
| TAAAGATAAATCAAAGTTAG+TGG | 0.440071 | 1.2:+75771425 | MS.gene34453:CDS |
| AAGAACGTGACGAATCATAA+TGG | 0.447206 | 1.2:+75770620 | MS.gene34453:CDS |
| CACTCCAAACCTCTAGGTTC+GGG | 0.452343 | 1.2:-75770653 | None:intergenic |
| TAAATCAAAGTTAGTGGTGA+TGG | 0.454330 | 1.2:+75771431 | MS.gene34453:CDS |
| GATGAGACCAGGAGGCTTGT+TGG | 0.454427 | 1.2:+75770679 | MS.gene34453:CDS |
| TTAACCTTAACTCTAATTGT+CGG | 0.472025 | 1.2:-75770746 | None:intergenic |
| GCTTAAGTTGGATGGTATAG+TGG | 0.485943 | 1.2:+75771747 | MS.gene34453:CDS |
| ATCAGTTTGCTTAAGTTGGA+TGG | 0.500689 | 1.2:+75771739 | MS.gene34453:intron |
| CGTTGAACCAACAAGCCTCC+TGG | 0.506657 | 1.2:-75770686 | None:intergenic |
| GACGAATCATAATGGAGGTT+CGG | 0.509154 | 1.2:+75770628 | MS.gene34453:CDS |
| ACTAATGTTGACTTCATGAT+AGG | 0.516375 | 1.2:-75770780 | None:intergenic |
| GTGGTGTATCCCAGTTGGAC+CGG | 0.518541 | 1.2:-75771334 | None:intergenic |
| TGGATGGTATAGTGGCTGAT+GGG | 0.523352 | 1.2:+75771755 | MS.gene34453:CDS |
| GAATTGAAGAAAATGTTAAC+CGG | 0.528236 | 1.2:+75771315 | MS.gene34453:CDS |
| CTCGATCCGAGTCTAAGGTT+CGG | 0.528564 | 1.2:-75770709 | None:intergenic |
| CCGAACCTAGAGGTTTGGAG+TGG | 0.531731 | 1.2:+75770654 | MS.gene34453:CDS |
| ACCTTAACTCTAATTGTCGG+TGG | 0.538745 | 1.2:-75770743 | None:intergenic |
| CTTAGACTCGGATCGAGACT+CGG | 0.539623 | 1.2:+75770715 | MS.gene34453:CDS |
| AAACAAGGAGAGGGATTCAA+AGG | 0.544060 | 1.2:+75771380 | MS.gene34453:CDS |
| TTGGAGTGGGAGATGAGACC+AGG | 0.544656 | 1.2:+75770668 | MS.gene34453:CDS |
| TCTTGGTGGTGTATCCCAGT+TGG | 0.549913 | 1.2:-75771339 | None:intergenic |
| TTGGATGGTATAGTGGCTGA+TGG | 0.567402 | 1.2:+75771754 | MS.gene34453:CDS |
| GGATGGTATAGTGGCTGATG+GGG | 0.575853 | 1.2:+75771756 | MS.gene34453:CDS |
| ATCTCCCACTCCAAACCTCT+AGG | 0.584464 | 1.2:-75770659 | None:intergenic |
| TAAATTGCAGAGGAAAATGC+AGG | 0.597959 | 1.2:+75771783 | MS.gene34453:CDS |
| ATCAAAGTTAGTGGTGATGG+AGG | 0.599290 | 1.2:+75771434 | MS.gene34453:CDS |
| AATGTTGACTTCATGATAGG+TGG | 0.604883 | 1.2:-75770777 | None:intergenic |
| ATCCTATTGCTCAAGAGAAG+AGG | 0.610825 | 1.2:+75771457 | MS.gene34453:CDS |
| AAATGTTAACCGGTCCAACT+GGG | 0.615599 | 1.2:+75771325 | MS.gene34453:CDS |
| TTAACTCTAATTGTCGGTGG+AGG | 0.619157 | 1.2:-75770740 | None:intergenic |
| GGTTCGGTTCCCGAACCTAG+AGG | 0.622759 | 1.2:+75770644 | MS.gene34453:CDS |
| CGAACCTAGAGGTTTGGAGT+GGG | 0.637249 | 1.2:+75770655 | MS.gene34453:CDS |
| AAAATTAAGAATTCTAATGG+AGG | 0.640605 | 1.2:+75772539 | MS.gene34453:CDS |
| ATGGGGATGTTAAATTGCAG+AGG | 0.645911 | 1.2:+75771773 | MS.gene34453:CDS |
| AACGTGACGAATCATAATGG+AGG | 0.690876 | 1.2:+75770623 | MS.gene34453:CDS |
| TCAACGCCGAACCTTAGACT+CGG | 0.694481 | 1.2:+75770703 | MS.gene34453:CDS |
| GAGTGGGAGATGAGACCAGG+AGG | 0.701762 | 1.2:+75770671 | MS.gene34453:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATAATAAA+AGG | - | chr1.2:75770839-75770858 | None:intergenic | 0.0% |
| !! | TAATAATAATAATAATAAAA+GGG | - | chr1.2:75770838-75770857 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAAAAGG+GGG | - | chr1.2:75770836-75770855 | None:intergenic | 10.0% |
| !! | ATTAATAAAATTAGATGTTA+GGG | - | chr1.2:75771987-75772006 | None:intergenic | 10.0% |
| !! | TAAAATTAAGTCATTTAAAA+TGG | - | chr1.2:75772087-75772106 | None:intergenic | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr1.2:75771064-75771083 | MS.gene34453:intron | 10.0% |
| !! | AAAAAATATAAAGATGGAAA+GGG | + | chr1.2:75771494-75771513 | MS.gene34453:intron | 15.0% |
| !! | AATGAGAAAAAATATAAAGA+TGG | + | chr1.2:75771488-75771507 | MS.gene34453:intron | 15.0% |
| !! | ATACATTAGTAAAAAAAGTA+TGG | - | chr1.2:75770959-75770978 | None:intergenic | 15.0% |
| !! | ATATTTAATGCTTGAATAAT+TGG | + | chr1.2:75771604-75771623 | MS.gene34453:intron | 15.0% |
| !! | CATTAATAAAATTAGATGTT+AGG | - | chr1.2:75771988-75772007 | None:intergenic | 15.0% |
| !! | TAATAATAATAATAAAAGGG+GGG | - | chr1.2:75770835-75770854 | None:intergenic | 15.0% |
| !!! | ACATTCATTAATGATTTTAT+TGG | + | chr1.2:75772428-75772447 | MS.gene34453:intron | 15.0% |
| !!! | TATAAAATATTTTTTGGTCT+TGG | - | chr1.2:75771359-75771378 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTATGATAAGGT+TGG | + | chr1.2:75771576-75771595 | MS.gene34453:intron | 15.0% |
| !! | AAAAATCAATCATTCGATAT+AGG | - | chr1.2:75771246-75771265 | None:intergenic | 20.0% |
| !! | AAAAATCATGACATCTAATT+TGG | + | chr1.2:75771913-75771932 | MS.gene34453:intron | 20.0% |
| !! | AAAATTAAGAATTCTAATGG+AGG | + | chr1.2:75772539-75772558 | MS.gene34453:CDS | 20.0% |
| !! | AAAGTAAGTCAAGTAAAAAT+TGG | - | chr1.2:75770934-75770953 | None:intergenic | 20.0% |
| !! | AATAATAATAATAAAAGGGG+GGG | - | chr1.2:75770834-75770853 | None:intergenic | 20.0% |
| !! | ATTAGAGTTAAGGTTAAATT+TGG | + | chr1.2:75770752-75770771 | MS.gene34453:CDS | 20.0% |
| !! | ATTATAGCATATAATGATGT+TGG | + | chr1.2:75772168-75772187 | MS.gene34453:intron | 20.0% |
| !! | CTGAAAATTAAGAATTCTAA+TGG | + | chr1.2:75772536-75772555 | MS.gene34453:CDS | 20.0% |
| !! | GAAAAAATATAAAGATGGAA+AGG | + | chr1.2:75771493-75771512 | MS.gene34453:intron | 20.0% |
| !! | GATTGAATAAATCATTTATC+TGG | + | chr1.2:75771199-75771218 | MS.gene34453:intron | 20.0% |
| !! | TAAAGATAAATCAAAGTTAG+TGG | + | chr1.2:75771425-75771444 | MS.gene34453:CDS | 20.0% |
| !!! | ATGGTAGTTAATAATTTTGA+AGG | + | chr1.2:75772475-75772494 | MS.gene34453:intron | 20.0% |
| !!! | ATTTTATAAAAACAAGGAGA+GGG | + | chr1.2:75771371-75771390 | MS.gene34453:CDS | 20.0% |
| !!! | TATTTTATAAAAACAAGGAG+AGG | + | chr1.2:75771370-75771389 | MS.gene34453:CDS | 20.0% |
| !!! | TTAAGTCATTTAAAATGGAA+CGG | - | chr1.2:75772082-75772101 | None:intergenic | 20.0% |
| ! | ATCTATTTCAGAAATTAGCT+TGG | + | chr1.2:75771525-75771544 | MS.gene34453:intron | 25.0% |
| ! | ATGATATGAATTGCTTGATT+AGG | + | chr1.2:75771636-75771655 | MS.gene34453:intron | 25.0% |
| ! | GAAACAATAATTAGTAAGGT+GGG | + | chr1.2:75771670-75771689 | MS.gene34453:intron | 25.0% |
| ! | GAATTGAAGAAAATGTTAAC+CGG | + | chr1.2:75771315-75771334 | MS.gene34453:CDS | 25.0% |
| ! | GATACTTAAGATCAAAATTG+TGG | + | chr1.2:75772247-75772266 | MS.gene34453:intron | 25.0% |
| ! | TAGTACATTATTGCTTCTAA+TGG | + | chr1.2:75772456-75772475 | MS.gene34453:intron | 25.0% |
| ! | TCAACAGTGTCATATAATAT+AGG | + | chr1.2:75772289-75772308 | MS.gene34453:intron | 25.0% |
| ! | TCAATTTAAGAGGAAATCTA+AGG | - | chr1.2:75771860-75771879 | None:intergenic | 25.0% |
| ! | TCTCGAAACAATAATTAGTA+AGG | + | chr1.2:75771666-75771685 | MS.gene34453:intron | 25.0% |
| ! | TGAAAATAACATTTATTCCC+CGG | + | chr1.2:75771942-75771961 | MS.gene34453:intron | 25.0% |
| ! | TTAACCTTAACTCTAATTGT+CGG | - | chr1.2:75770749-75770768 | None:intergenic | 25.0% |
| ! | TTTATTAATGTGTCCACTTT+AGG | + | chr1.2:75771998-75772017 | MS.gene34453:intron | 25.0% |
| !! | ACAAAAGTATGTTGAAACTT+TGG | + | chr1.2:75772508-75772527 | MS.gene34453:CDS | 25.0% |
| !! | CTTTCTCATTGATTAATGTT+TGG | + | chr1.2:75771282-75771301 | MS.gene34453:intron | 25.0% |
| !!! | AAAATATTTTTTGGTCTTGG+TGG | - | chr1.2:75771356-75771375 | None:intergenic | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | chr1.2:75770916-75770935 | None:intergenic | 25.0% |
| !!! | CACTCTAAAATCAATTTAAG+AGG | - | chr1.2:75771870-75771889 | None:intergenic | 25.0% |
| ATTAGTTCACAAGCAACATT+TGG | + | chr1.2:75770797-75770816 | MS.gene34453:CDS | 30.0% | |
| CGAAACAATAATTAGTAAGG+TGG | + | chr1.2:75771669-75771688 | MS.gene34453:intron | 30.0% | |
| TAAATCAAAGTTAGTGGTGA+TGG | + | chr1.2:75771431-75771450 | MS.gene34453:CDS | 30.0% | |
| TGTCATATAATATAGGACGA+CGG | + | chr1.2:75772296-75772315 | MS.gene34453:intron | 30.0% | |
| ! | AAATTAGCTTGGAAGTAGAT+AGG | + | chr1.2:75771536-75771555 | MS.gene34453:intron | 30.0% |
| ! | ATGAATCAGTTTGCTTAAGT+TGG | + | chr1.2:75771735-75771754 | MS.gene34453:intron | 30.0% |
| !! | ACTAATGTTGACTTCATGAT+AGG | - | chr1.2:75770783-75770802 | None:intergenic | 30.0% |
| !! | ATTAATGTTTGGTGTCATAG+GGG | + | chr1.2:75771293-75771312 | MS.gene34453:intron | 30.0% |
| !! | GATTAATGTTTGGTGTCATA+GGG | + | chr1.2:75771292-75771311 | MS.gene34453:intron | 30.0% |
| !! | TGATTAATGTTTGGTGTCAT+AGG | + | chr1.2:75771291-75771310 | MS.gene34453:intron | 30.0% |
| !! | TTTGTTGAGGCTTTTTCTTT+GGG | - | chr1.2:75772572-75772591 | None:intergenic | 30.0% |
| !! | TTTTGTTGAGGCTTTTTCTT+TGG | - | chr1.2:75772573-75772592 | None:intergenic | 30.0% |
| !!! | GACATGTATTTTGAAACAGA+GGG | + | chr1.2:75771126-75771145 | MS.gene34453:intron | 30.0% |
| AAGAACGTGACGAATCATAA+TGG | + | chr1.2:75770620-75770639 | MS.gene34453:CDS | 35.0% | |
| ACATTTATTCCCCGGAAAAA+CGG | + | chr1.2:75771950-75771969 | MS.gene34453:intron | 35.0% | |
| ATATAATATAGGACGACGGA+GGG | + | chr1.2:75772300-75772319 | MS.gene34453:intron | 35.0% | |
| TAAATTGCAGAGGAAAATGC+AGG | + | chr1.2:75771783-75771802 | MS.gene34453:CDS | 35.0% | |
| ! | AAGGCATTTCTTGACATAGT+AGG | + | chr1.2:75771399-75771418 | MS.gene34453:CDS | 35.0% |
| !! | AATGTTGACTTCATGATAGG+TGG | - | chr1.2:75770780-75770799 | None:intergenic | 35.0% |
| !! | ACTAAGTTATCCCGTTTTTC+CGG | - | chr1.2:75771964-75771983 | None:intergenic | 35.0% |
| !! | ATCAGTTTGCTTAAGTTGGA+TGG | + | chr1.2:75771739-75771758 | MS.gene34453:intron | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+GGG | - | chr1.2:75770912-75770931 | None:intergenic | 35.0% |
| !!! | GGACATGTATTTTGAAACAG+AGG | + | chr1.2:75771125-75771144 | MS.gene34453:intron | 35.0% |
| AAAATGTTAACCGGTCCAAC+TGG | + | chr1.2:75771324-75771343 | MS.gene34453:CDS | 40.0% | |
| AAACAAGGAGAGGGATTCAA+AGG | + | chr1.2:75771380-75771399 | MS.gene34453:CDS | 40.0% | |
| AAATGTTAACCGGTCCAACT+GGG | + | chr1.2:75771325-75771344 | MS.gene34453:CDS | 40.0% | |
| AACGTGACGAATCATAATGG+AGG | + | chr1.2:75770623-75770642 | MS.gene34453:CDS | 40.0% | |
| ACCTTAACTCTAATTGTCGG+TGG | - | chr1.2:75770746-75770765 | None:intergenic | 40.0% | |
| ATCCTATTGCTCAAGAGAAG+AGG | + | chr1.2:75771457-75771476 | MS.gene34453:CDS | 40.0% | |
| ATGGGGATGTTAAATTGCAG+AGG | + | chr1.2:75771773-75771792 | MS.gene34453:CDS | 40.0% | |
| CATATAATATAGGACGACGG+AGG | + | chr1.2:75772299-75772318 | MS.gene34453:intron | 40.0% | |
| CATATGTGAAGTGGTTGACT+TGG | + | chr1.2:75771104-75771123 | MS.gene34453:intron | 40.0% | |
| CATTTATTCCCCGGAAAAAC+GGG | + | chr1.2:75771951-75771970 | MS.gene34453:intron | 40.0% | |
| TACCTCTTCTCTTGAGCAAT+AGG | - | chr1.2:75771462-75771481 | None:intergenic | 40.0% | |
| TCCACCGACAATTAGAGTTA+AGG | + | chr1.2:75770742-75770761 | MS.gene34453:CDS | 40.0% | |
| TTAACTCTAATTGTCGGTGG+AGG | - | chr1.2:75770743-75770762 | None:intergenic | 40.0% | |
| ! | GACGAATCATAATGGAGGTT+CGG | + | chr1.2:75770628-75770647 | MS.gene34453:CDS | 40.0% |
| ! | GTGCATTGACATATGTGAAG+TGG | + | chr1.2:75771095-75771114 | MS.gene34453:intron | 40.0% |
| !! | ATCAAAGTTAGTGGTGATGG+AGG | + | chr1.2:75771434-75771453 | MS.gene34453:CDS | 40.0% |
| !! | CTAAGTTATCCCGTTTTTCC+GGG | - | chr1.2:75771963-75771982 | None:intergenic | 40.0% |
| !! | GCTTAAGTTGGATGGTATAG+TGG | + | chr1.2:75771747-75771766 | MS.gene34453:CDS | 40.0% |
| !! | TAAGTTATCCCGTTTTTCCG+GGG | - | chr1.2:75771962-75771981 | None:intergenic | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr1.2:75770913-75770932 | None:intergenic | 40.0% |
| GTGTCCACTTTAGGTCACAA+GGG | + | chr1.2:75772007-75772026 | MS.gene34453:intron | 45.0% | |
| TGGAAGTAGATAGGCTTGCA+GGG | + | chr1.2:75771545-75771564 | MS.gene34453:intron | 45.0% | |
| TGGATGGTATAGTGGCTGAT+GGG | + | chr1.2:75771755-75771774 | MS.gene34453:CDS | 45.0% | |
| TGTGTCCACTTTAGGTCACA+AGG | + | chr1.2:75772006-75772025 | MS.gene34453:intron | 45.0% | |
| TTGGAAGTAGATAGGCTTGC+AGG | + | chr1.2:75771544-75771563 | MS.gene34453:intron | 45.0% | |
| TTGGATGGTATAGTGGCTGA+TGG | + | chr1.2:75771754-75771773 | MS.gene34453:CDS | 45.0% | |
| TTGTCCCTTGTGACCTAAAG+TGG | - | chr1.2:75772014-75772033 | None:intergenic | 45.0% | |
| !! | TGCTCAAGAGAAGAGGTACT+TGG | + | chr1.2:75771464-75771483 | MS.gene34453:intron | 45.0% |
| !! | AATAATAATAATAATAAAAG+GGG | - | chr1.2:75770837-75770856 | None:intergenic | 5.0% |
| !!! | AAAAATATTTTATAAAAACA+AGG | + | chr1.2:75771365-75771384 | MS.gene34453:CDS | 5.0% |
| !!! | TAAATTTTTTTTTTATGATA+AGG | + | chr1.2:75771572-75771591 | MS.gene34453:intron | 5.0% |
| !!! | TGTTTTTATAAAATATTTTT+TGG | - | chr1.2:75771365-75771384 | None:intergenic | 5.0% |
| ATCTCCCACTCCAAACCTCT+AGG | - | chr1.2:75770662-75770681 | None:intergenic | 50.0% | |
| CACTCCAAACCTCTAGGTTC+GGG | - | chr1.2:75770656-75770675 | None:intergenic | 50.0% | |
| CCACTCCAAACCTCTAGGTT+CGG | - | chr1.2:75770657-75770676 | None:intergenic | 50.0% | |
| CTTAGACTCGGATCGAGACT+CGG | + | chr1.2:75770715-75770734 | MS.gene34453:CDS | 50.0% | |
| GGATGGTATAGTGGCTGATG+GGG | + | chr1.2:75771756-75771775 | MS.gene34453:CDS | 50.0% | |
| TCAACGCCGAACCTTAGACT+CGG | + | chr1.2:75770703-75770722 | MS.gene34453:CDS | 50.0% | |
| ! | CGAACCTAGAGGTTTGGAGT+GGG | + | chr1.2:75770655-75770674 | MS.gene34453:CDS | 50.0% |
| ! | CTCGATCCGAGTCTAAGGTT+CGG | - | chr1.2:75770712-75770731 | None:intergenic | 50.0% |
| ! | GTGGATTGACAGACGTGACA+GGG | + | chr1.2:75772266-75772285 | MS.gene34453:intron | 50.0% |
| ! | TGTGGATTGACAGACGTGAC+AGG | + | chr1.2:75772265-75772284 | MS.gene34453:intron | 50.0% |
| !! | TCTTGGTGGTGTATCCCAGT+TGG | - | chr1.2:75771342-75771361 | None:intergenic | 50.0% |
| CCGAACCTAGAGGTTTGGAG+TGG | + | chr1.2:75770654-75770673 | MS.gene34453:CDS | 55.0% | |
| CGAGTCTCGATCCGAGTCTA+AGG | - | chr1.2:75770717-75770736 | None:intergenic | 55.0% | |
| CGTTGAACCAACAAGCCTCC+TGG | - | chr1.2:75770689-75770708 | None:intergenic | 55.0% | |
| GATGAGACCAGGAGGCTTGT+TGG | + | chr1.2:75770679-75770698 | MS.gene34453:CDS | 55.0% | |
| GGTTCCCGAACCTAGAGGTT+TGG | + | chr1.2:75770649-75770668 | MS.gene34453:CDS | 55.0% | |
| GTGGTGTATCCCAGTTGGAC+CGG | - | chr1.2:75771337-75771356 | None:intergenic | 55.0% | |
| TTGGAGTGGGAGATGAGACC+AGG | + | chr1.2:75770668-75770687 | MS.gene34453:CDS | 55.0% | |
| GAGTGGGAGATGAGACCAGG+AGG | + | chr1.2:75770671-75770690 | MS.gene34453:CDS | 60.0% | |
| ! | GGTTCGGTTCCCGAACCTAG+AGG | + | chr1.2:75770644-75770663 | MS.gene34453:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 75770608 | 75772593 | 75770608 | ID=MS.gene34453 |
| chr1.2 | mRNA | 75770608 | 75772593 | 75770608 | ID=MS.gene34453.t1;Parent=MS.gene34453 |
| chr1.2 | exon | 75770608 | 75770818 | 75770608 | ID=MS.gene34453.t1.exon1;Parent=MS.gene34453.t1 |
| chr1.2 | CDS | 75770608 | 75770818 | 75770608 | ID=cds.MS.gene34453.t1;Parent=MS.gene34453.t1 |
| chr1.2 | exon | 75771313 | 75771478 | 75771313 | ID=MS.gene34453.t1.exon2;Parent=MS.gene34453.t1 |
| chr1.2 | CDS | 75771313 | 75771478 | 75771313 | ID=cds.MS.gene34453.t1;Parent=MS.gene34453.t1 |
| chr1.2 | exon | 75771744 | 75771804 | 75771744 | ID=MS.gene34453.t1.exon3;Parent=MS.gene34453.t1 |
| chr1.2 | CDS | 75771744 | 75771804 | 75771744 | ID=cds.MS.gene34453.t1;Parent=MS.gene34453.t1 |
| chr1.2 | exon | 75772497 | 75772593 | 75772497 | ID=MS.gene34453.t1.exon4;Parent=MS.gene34453.t1 |
| chr1.2 | CDS | 75772497 | 75772593 | 75772497 | ID=cds.MS.gene34453.t1;Parent=MS.gene34453.t1 |
| Gene Sequence |
| Protein sequence |
