AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35740.t1 MTR_2g089765 92.387 486 37 0 7 492 3 488 0.0 937
MS.gene35740.t1 MTR_2g089670 70.766 496 122 7 6 492 2 483 0.0 664
MS.gene35740.t1 MTR_8g012750 69.008 484 131 11 18 490 1 476 0.0 622
MS.gene35740.t1 MTR_2g089665 60.135 444 65 6 20 461 2 335 2.02e-172 489
MS.gene35740.t1 MTR_7g015860 42.946 482 234 12 20 486 5 460 7.15e-118 354
MS.gene35740.t1 MTR_3g028210 36.157 484 275 10 18 489 6 467 1.26e-98 305
MS.gene35740.t1 MTR_2g089650 36.214 486 274 13 16 489 5 466 1.15e-88 279
MS.gene35740.t1 MTR_7g014330 38.235 476 254 14 21 482 3 452 9.38e-88 276
MS.gene35740.t1 MTR_6g015850 36.196 489 267 15 14 489 4 460 3.13e-83 265
MS.gene35740.t1 MTR_2g089755 36.226 461 261 12 43 489 37 478 3.93e-83 265
MS.gene35740.t1 MTR_6g015815 35.135 481 274 12 21 489 9 463 4.19e-81 259
MS.gene35740.t1 MTR_7g014230 36.653 472 267 12 21 482 5 454 7.52e-81 259
MS.gene35740.t1 MTR_7g014250 35.805 472 271 12 21 482 3 452 8.13e-80 256
MS.gene35740.t1 MTR_2g089735 35.808 458 256 14 47 489 30 464 1.27e-78 253
MS.gene35740.t1 MTR_3g087640 35.318 487 272 15 21 487 10 473 1.64e-77 251
MS.gene35740.t1 MTR_6g015830 35.306 490 273 14 14 489 4 463 1.64e-77 250
MS.gene35740.t1 MTR_7g014200 34.325 504 274 16 6 488 3 470 7.96e-77 249
MS.gene35740.t1 MTR_7g014160 33.466 502 282 16 6 486 3 473 4.52e-71 234
MS.gene35740.t1 MTR_6g015320 32.278 474 285 11 25 489 11 457 9.22e-71 232
MS.gene35740.t1 MTR_7g014610 33.532 504 275 17 17 491 5 477 6.25e-69 228
MS.gene35740.t1 MTR_6g015315 32.589 448 275 7 47 489 30 455 4.08e-68 225
MS.gene35740.t1 MTR_7g013850 31.501 473 272 13 44 486 30 480 3.06e-62 211
MS.gene35740.t1 MTR_7g014620 33.261 463 253 12 39 486 11 432 6.38e-58 198
MS.gene35740.t1 MTR_7g014360 30.923 401 232 12 88 482 21 382 1.69e-45 164
MS.gene35740.t1 MTR_3g435300 36.170 282 156 8 21 292 4 271 2.26e-43 154
MS.gene35740.t1 MTR_2g089745 87.952 83 10 0 410 492 1 83 7.21e-41 141
MS.gene35740.t1 MTR_7g014630 34.247 292 155 10 17 289 6 279 3.08e-32 127
MS.gene35740.t1 MTR_7g014310 29.942 344 172 10 127 468 29 305 8.46e-32 124
MS.gene35740.t1 MTR_7g014670 37.037 189 110 2 299 486 79 259 1.51e-30 119
MS.gene35740.t1 MTR_6g015310 27.763 389 207 10 85 464 10 333 1.54e-30 121
MS.gene35740.t1 MTR_7g014180 38.202 178 96 5 20 193 7 174 1.99e-26 105
MS.gene35740.t1 MTR_8g041770 26.341 410 239 12 43 438 30 390 1.80e-19 91.3
MS.gene35740.t1 MTR_4g094835 24.380 484 281 17 19 472 3 431 3.73e-18 87.0
MS.gene35740.t1 MTR_3g098980 24.088 411 255 10 78 478 65 428 4.33e-18 87.0
MS.gene35740.t1 MTR_7g026860 23.598 428 273 13 57 472 38 423 8.13e-18 86.3
MS.gene35740.t1 MTR_4g022825 25.060 415 237 15 49 438 26 391 4.90e-17 83.6
MS.gene35740.t1 MTR_7g014210 39.130 115 68 2 344 456 24 138 8.26e-17 78.2
MS.gene35740.t1 MTR_4g022720 22.388 469 298 13 19 472 3 420 1.12e-16 82.4
MS.gene35740.t1 MTR_8g096530 24.779 452 268 18 53 490 36 429 4.06e-16 80.9
MS.gene35740.t1 MTR_3g088420 24.941 425 246 13 32 438 15 384 1.16e-15 79.3
MS.gene35740.t1 MTR_3g070170 22.462 463 297 17 41 475 31 459 1.87e-15 79.0
MS.gene35740.t1 MTR_4g127650 23.679 473 289 14 41 486 29 456 2.09e-15 79.0
MS.gene35740.t1 MTR_0190s0020 25.236 424 258 13 64 472 48 427 3.26e-15 78.2
MS.gene35740.t1 MTR_4g022800 23.866 419 259 15 37 438 18 393 3.47e-15 78.2
MS.gene35740.t1 MTR_4g022670 23.632 402 268 12 43 438 24 392 3.99e-15 77.8
MS.gene35740.t1 MTR_7g014340 58.824 68 27 1 21 87 3 70 4.18e-15 71.2
MS.gene35740.t1 MTR_7g014220 58.730 63 26 0 35 97 10 72 3.83e-14 68.2
MS.gene35740.t1 MTR_7g014205 37.719 114 59 2 342 454 18 120 3.97e-14 69.3
MS.gene35740.t1 MTR_2g064495 21.918 438 285 14 59 484 39 431 5.92e-14 74.3
MS.gene35740.t1 MTR_4g094828 21.513 423 260 15 39 438 25 398 8.24e-14 73.9
MS.gene35740.t1 MTR_3g026310 23.741 417 256 14 43 438 24 399 1.17e-13 73.2
MS.gene35740.t1 MTR_8g075610 24.235 425 264 16 59 471 30 408 1.66e-13 72.8
MS.gene35740.t1 MTR_3g435290 33.884 121 77 2 367 487 1 118 2.84e-13 67.0
MS.gene35740.t1 MTR_3g049150 25.490 357 202 13 159 486 126 447 3.11e-12 68.9
MS.gene35740.t1 MTR_3g101960 22.718 493 284 19 19 475 5 436 2.42e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35740.t1 AT1G03940 38.958 480 265 12 21 491 9 469 7.74e-104 318
MS.gene35740.t1 AT1G03495 39.888 356 182 12 22 368 10 342 2.76e-70 228
MS.gene35740.t1 AT3G29670 32.231 484 278 15 18 486 1 449 7.98e-66 219
MS.gene35740.t1 AT5G61160 31.185 481 292 14 18 488 1 452 9.22e-62 209
MS.gene35740.t1 AT3G29635 30.533 488 292 13 18 489 1 457 3.41e-59 202
MS.gene35740.t1 AT3G29590 32.150 479 279 16 19 487 7 449 7.56e-57 196
MS.gene35740.t1 AT3G29680 30.252 476 294 10 20 487 3 448 4.60e-56 193
MS.gene35740.t1 AT5G39090 30.042 476 293 13 19 486 4 447 2.12e-55 192
MS.gene35740.t1 AT5G39050 29.518 498 300 13 12 488 2 469 1.18e-53 187
MS.gene35740.t1 AT5G39080 27.721 487 304 15 19 486 4 461 7.47e-49 174
MS.gene35740.t1 AT3G48720 22.936 436 271 12 56 478 41 424 4.90e-18 86.7
MS.gene35740.t1 AT3G29690 30.864 162 100 4 331 488 27 180 5.98e-16 76.3
MS.gene35740.t1 AT5G41040 23.364 428 268 14 73 489 63 441 1.20e-15 79.3
MS.gene35740.t1 AT5G41040 23.598 428 267 14 73 489 79 457 1.86e-15 79.0
MS.gene35740.t1 AT1G65450 24.776 335 207 13 163 486 149 449 3.67e-13 72.0
MS.gene35740.t1 AT5G01210 22.674 344 216 10 163 480 141 460 5.93e-12 68.2

Find 100 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACTGTTCTTCCAAATTC+TGG 0.075389 2.1:+12411289 MS.gene35740:CDS
TTCATCATTTCATGAAATTC+TGG 0.154366 2.1:+12411362 MS.gene35740:CDS
CAAATAGACAACCCAGAATT+TGG 0.217457 2.1:-12411301 None:intergenic
GCTGTTTATGAGACTGATTT+TGG 0.237069 2.1:+12412063 MS.gene35740:CDS
AAACATTGATGTCTGATTAT+AGG 0.245779 2.1:+12411986 MS.gene35740:CDS
GGTTGCTGGTTCACCGAAAT+TGG 0.246480 2.1:+12412041 MS.gene35740:CDS
GTACGAGGTGGAGGTAAATT+TGG 0.264562 2.1:-12411223 None:intergenic
GGAGGGGTGTTAAGGAAATT+TGG 0.272710 2.1:-12411085 None:intergenic
CATCCCTATAATGGCTATTC+AGG 0.277699 2.1:+12411267 MS.gene35740:CDS
TAACCCATTTCTTCAACTTC+TGG 0.280416 2.1:-12411621 None:intergenic
AACATTGATGTCTGATTATA+GGG 0.290004 2.1:+12411987 MS.gene35740:CDS
GTTGGTGATGGAACTGAATT+TGG 0.302858 2.1:-12410878 None:intergenic
GTAAAGAGAGATGAGTTAAT+TGG 0.307415 2.1:+12411883 MS.gene35740:CDS
TTTAAGAGTGATGCTTTGTT+AGG 0.320839 2.1:+12411958 MS.gene35740:CDS
CTTTAACTCTATCTCTTTCA+TGG 0.321227 2.1:-12411462 None:intergenic
GTGACCTGAATAGCCATTAT+AGG 0.322860 2.1:-12411271 None:intergenic
ATGATGAGGTTGGAGGAAAA+AGG 0.329263 2.1:-12411058 None:intergenic
TCACTGTTCTTCCAAATTCT+GGG 0.346380 2.1:+12411290 MS.gene35740:CDS
ACTATGTTCTATCACCTTCA+TGG 0.354613 2.1:-12410840 None:intergenic
TTGTAACAAGCTCCTTGATT+TGG 0.359633 2.1:+12411692 MS.gene35740:CDS
TAGAAGAAGATACGTTTAAC+AGG 0.362847 2.1:-12410947 None:intergenic
TGAACTGCATCAGATTTCTT+AGG 0.374068 2.1:-12412096 None:intergenic
AAGTCCAGAAGTTGAAGAAA+TGG 0.376086 2.1:+12411617 MS.gene35740:CDS
TGACATGGAATTCGCAGGTT+TGG 0.377125 2.1:+12411540 MS.gene35740:CDS
AAGTCTGTTACTGTGGTTGC+TGG 0.378057 2.1:+12412027 MS.gene35740:CDS
TCATCATTTCATGAAATTCT+GGG 0.381535 2.1:+12411363 MS.gene35740:CDS
TGTGTTTGTGTTTGTGTTTG+TGG 0.385306 2.1:-12410792 None:intergenic
CATTCGTGTCATCCCTATAA+TGG 0.385956 2.1:+12411258 MS.gene35740:CDS
GAAGAAGTGTTGGAGGGTTA+AGG 0.387404 2.1:-12411035 None:intergenic
GTATATAAGGAGGGGTGTTA+AGG 0.392845 2.1:-12411093 None:intergenic
GGAAAGTGAGTGTTTAAGAA+TGG 0.394305 2.1:-12411014 None:intergenic
GTCTCATAAACAGCCAATTT+CGG 0.394758 2.1:-12412054 None:intergenic
ATTATTGTTGTTTGTTGCTA+TGG 0.405288 2.1:-12411401 None:intergenic
ATTCACAAGATGCTCAAAAC+TGG 0.405633 2.1:+12411188 MS.gene35740:CDS
ATTTGGAGGGATGATGAGGT+TGG 0.424629 2.1:-12411068 None:intergenic
TGACCTGAATAGCCATTATA+GGG 0.424676 2.1:-12411270 None:intergenic
TCATCAAGGTAACGTATATA+AGG 0.436544 2.1:-12411106 None:intergenic
TCTCTTTCTGATTGTAGAGA+TGG 0.439448 2.1:+12412141 MS.gene35740:CDS
AGATAGAGTTAAAGATCTAA+AGG 0.440490 2.1:+12411471 MS.gene35740:CDS
TGGTATGTCGAAGAAAGTTA+AGG 0.445120 2.1:-12410909 None:intergenic
AGGTGGAATTGAAGTTGGTT+TGG 0.449191 2.1:+12412167 MS.gene35740:CDS
TATCACCTTCATGGTGAACT+TGG 0.449377 2.1:-12410831 None:intergenic
GAAAGTGAGTGTTTAAGAAT+GGG 0.453451 2.1:-12411013 None:intergenic
CTTTCTGATTGTAGAGATGG+TGG 0.471103 2.1:+12412144 MS.gene35740:CDS
GAATGGGAAGTGTTGTTTGA+AGG 0.475295 2.1:-12410997 None:intergenic
GGGATTGTTGTGGCTTCAAT+TGG 0.477890 2.1:+12411913 MS.gene35740:CDS
GGTGGAGGTGGAATTGAAGT+TGG 0.477895 2.1:+12412162 MS.gene35740:CDS
GATAGAGTTAAAGATCTAAA+GGG 0.478327 2.1:+12411472 MS.gene35740:CDS
GGTATGTCGAAGAAAGTTAA+GGG 0.489263 2.1:-12410908 None:intergenic
GGTGATGGAACTGAATTTGG+TGG 0.489909 2.1:-12410875 None:intergenic
GCAGTTCATCTTGATTCGTC+CGG 0.491791 2.1:+12412111 MS.gene35740:CDS
AGTCCAGAAGTTGAAGAAAT+GGG 0.492194 2.1:+12411618 MS.gene35740:CDS
GTTTGAAGGAAGTGATGAGT+TGG 0.500560 2.1:-12410983 None:intergenic
TTTAACTCTATCTCTTTCAT+GGG 0.506937 2.1:-12411461 None:intergenic
TGGAGGGATGATGAGGTTGG+AGG 0.507278 2.1:-12411065 None:intergenic
GGAAATTTGGAGGGATGATG+AGG 0.508297 2.1:-12411072 None:intergenic
AAGGGGAGAATGGTTGGTGA+TGG 0.521926 2.1:-12410890 None:intergenic
GATCATACAAAACCAAATCA+AGG 0.527811 2.1:-12411704 None:intergenic
TCAAATGACATGGAATTCGC+AGG 0.531701 2.1:+12411535 MS.gene35740:CDS
GATTGTAGAGATGGTGGAGG+TGG 0.541712 2.1:+12412150 MS.gene35740:CDS
ACTCTATCTCTTTCATGGGA+AGG 0.547296 2.1:-12411457 None:intergenic
AAAGTTAAGGGGAGAATGGT+TGG 0.550742 2.1:-12410896 None:intergenic
TTGTCTTGCATCTTATATTG+TGG 0.552776 2.1:+12411858 MS.gene35740:CDS
TCTTGTTCAGTACGAGGTGG+AGG 0.553828 2.1:-12411232 None:intergenic
ATCAGAAAGAGAAATCGAAC+CGG 0.560110 2.1:-12412130 None:intergenic
GAAGAAAGTTAAGGGGAGAA+TGG 0.561998 2.1:-12410900 None:intergenic
GATGAGTTGGATGAGGAAAG+TGG 0.563879 2.1:-12410970 None:intergenic
CAAGGTAACGTATATAAGGA+GGG 0.577627 2.1:-12411102 None:intergenic
TGAGGATTCAGCGACGGTGA+AGG 0.579651 2.1:-12411140 None:intergenic
CATGGGAAGGAAGATCAAGA+GGG 0.580759 2.1:-12411444 None:intergenic
GATGGAACTGAATTTGGTGG+TGG 0.582071 2.1:-12410872 None:intergenic
TACAACCATCTTGCTGCAGA+CGG 0.585188 2.1:+12411331 MS.gene35740:CDS
GAGGTAAATTTGGAACAAGA+TGG 0.586717 2.1:-12411213 None:intergenic
TAACTTTCTTCGACATACCA+TGG 0.593348 2.1:+12410912 MS.gene35740:CDS
ACCTGGTAAGTCTGTTACTG+TGG 0.593576 2.1:+12412020 MS.gene35740:CDS
TCAAGGTAACGTATATAAGG+AGG 0.593641 2.1:-12411103 None:intergenic
TTGTATGATCAAATCAGAGG+AGG 0.597606 2.1:+12411717 MS.gene35740:CDS
TGAGACCAAGTTCACCATGA+AGG 0.600163 2.1:+12410826 MS.gene35740:CDS
AGGAAGTGATGAGTTGGATG+AGG 0.606178 2.1:-12410977 None:intergenic
TGTATGATCAAATCAGAGGA+GGG 0.615042 2.1:+12411718 MS.gene35740:CDS
AAAAGGGAAGAAGTGTTGGA+GGG 0.615109 2.1:-12411041 None:intergenic
GTCTGCTGAGGATTCAGCGA+CGG 0.615979 2.1:-12411146 None:intergenic
TCTGATTGTAGAGATGGTGG+AGG 0.625713 2.1:+12412147 MS.gene35740:CDS
TATAGGGAAATATCAAAACC+TGG 0.626368 2.1:+12412003 MS.gene35740:CDS
ACCACAGTAACAGACTTACC+AGG 0.630856 2.1:-12412021 None:intergenic
TCATGGGAAGGAAGATCAAG+AGG 0.635606 2.1:-12411445 None:intergenic
AGATTCTGAATCAAATGACA+TGG 0.642714 2.1:+12411525 MS.gene35740:CDS
GGGGTGTTAAGGAAATTTGG+AGG 0.652407 2.1:-12411082 None:intergenic
TTGTCTTGTTCAGTACGAGG+TGG 0.652618 2.1:-12411235 None:intergenic
GGGTGTTAAGGAAATTTGGA+GGG 0.656247 2.1:-12411081 None:intergenic
AGGATAGAGAGTCTTCATCA+AGG 0.656629 2.1:-12411120 None:intergenic
GTATGTCGAAGAAAGTTAAG+GGG 0.670105 2.1:-12410907 None:intergenic
GAGGATGTTGAAGTCTGCTG+AGG 0.672509 2.1:-12411158 None:intergenic
AAGGTAACGTATATAAGGAG+GGG 0.677863 2.1:-12411101 None:intergenic
CATCTTGTGAATCAGATACG+AGG 0.681815 2.1:-12411177 None:intergenic
ATGTTGTCTTGTTCAGTACG+AGG 0.683962 2.1:-12411238 None:intergenic
ACAGGGTGACAGTAAAACCA+TGG 0.693312 2.1:-12410929 None:intergenic
AGAAGAAGATACGTTTAACA+GGG 0.696018 2.1:-12410946 None:intergenic
TGGGAAGGAAGATCAAGAGG+GGG 0.698434 2.1:-12411442 None:intergenic
ATGGGAAGGAAGATCAAGAG+GGG 0.712513 2.1:-12411443 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAGTTAATTGGAAAAAAT+GGG + chr2.1:12411893-12411912 MS.gene35740:CDS 20.0%
!!! CAATTTCCAAAATAAGTTTT+TGG - chr2.1:12411841-12411860 None:intergenic 20.0%
!!! TCATTACCAAAAACTTATTT+TGG + chr2.1:12411832-12411851 MS.gene35740:CDS 20.0%
! AAACATTGATGTCTGATTAT+AGG + chr2.1:12411986-12412005 MS.gene35740:CDS 25.0%
! AACATTGATGTCTGATTATA+GGG + chr2.1:12411987-12412006 MS.gene35740:CDS 25.0%
! AGATAGAGTTAAAGATCTAA+AGG + chr2.1:12411471-12411490 MS.gene35740:CDS 25.0%
! GATAGAGTTAAAGATCTAAA+GGG + chr2.1:12411472-12411491 MS.gene35740:CDS 25.0%
! GATGAGTTAATTGGAAAAAA+TGG + chr2.1:12411892-12411911 MS.gene35740:CDS 25.0%
! TCATCATTTCATGAAATTCT+GGG + chr2.1:12411363-12411382 MS.gene35740:CDS 25.0%
! TTCATCATTTCATGAAATTC+TGG + chr2.1:12411362-12411381 MS.gene35740:CDS 25.0%
! TTTAACTCTATCTCTTTCAT+GGG - chr2.1:12411464-12411483 None:intergenic 25.0%
!!! ATTATTGTTGTTTGTTGCTA+TGG - chr2.1:12411404-12411423 None:intergenic 25.0%
AGAAGAAGATACGTTTAACA+GGG - chr2.1:12410949-12410968 None:intergenic 30.0%
AGATTCTGAATCAAATGACA+TGG + chr2.1:12411525-12411544 MS.gene35740:CDS 30.0%
CTTTAACTCTATCTCTTTCA+TGG - chr2.1:12411465-12411484 None:intergenic 30.0%
GAAAGTGAGTGTTTAAGAAT+GGG - chr2.1:12411016-12411035 None:intergenic 30.0%
GATCATACAAAACCAAATCA+AGG - chr2.1:12411707-12411726 None:intergenic 30.0%
GGTGATAAAAAAAGTGATCA+AGG + chr2.1:12411739-12411758 MS.gene35740:CDS 30.0%
GTAAAGAGAGATGAGTTAAT+TGG + chr2.1:12411883-12411902 MS.gene35740:CDS 30.0%
TAGAAGAAGATACGTTTAAC+AGG - chr2.1:12410950-12410969 None:intergenic 30.0%
TATAGGGAAATATCAAAACC+TGG + chr2.1:12412003-12412022 MS.gene35740:CDS 30.0%
TCATCAAGGTAACGTATATA+AGG - chr2.1:12411109-12411128 None:intergenic 30.0%
TTGTCTTGCATCTTATATTG+TGG + chr2.1:12411858-12411877 MS.gene35740:CDS 30.0%
! GTTTTGTATGATCAAATCAG+AGG + chr2.1:12411714-12411733 MS.gene35740:CDS 30.0%
! TTTAAGAGTGATGCTTTGTT+AGG + chr2.1:12411958-12411977 MS.gene35740:CDS 30.0%
!! CTGTTTATGAGACTGATTTT+GGG + chr2.1:12412064-12412083 MS.gene35740:CDS 30.0%
AAGGTAACGTATATAAGGAG+GGG - chr2.1:12411104-12411123 None:intergenic 35.0%
AAGTCCAGAAGTTGAAGAAA+TGG + chr2.1:12411617-12411636 MS.gene35740:CDS 35.0%
ACTATGTTCTATCACCTTCA+TGG - chr2.1:12410843-12410862 None:intergenic 35.0%
AGTCCAGAAGTTGAAGAAAT+GGG + chr2.1:12411618-12411637 MS.gene35740:CDS 35.0%
ATCAGAAAGAGAAATCGAAC+CGG - chr2.1:12412133-12412152 None:intergenic 35.0%
ATTCACAAGATGCTCAAAAC+TGG + chr2.1:12411188-12411207 MS.gene35740:CDS 35.0%
CAAATAGACAACCCAGAATT+TGG - chr2.1:12411304-12411323 None:intergenic 35.0%
CAAGGTAACGTATATAAGGA+GGG - chr2.1:12411105-12411124 None:intergenic 35.0%
GGAAAGTGAGTGTTTAAGAA+TGG - chr2.1:12411017-12411036 None:intergenic 35.0%
GGTATGTCGAAGAAAGTTAA+GGG - chr2.1:12410911-12410930 None:intergenic 35.0%
GTATGTCGAAGAAAGTTAAG+GGG - chr2.1:12410910-12410929 None:intergenic 35.0%
GTCTCATAAACAGCCAATTT+CGG - chr2.1:12412057-12412076 None:intergenic 35.0%
TAACCCATTTCTTCAACTTC+TGG - chr2.1:12411624-12411643 None:intergenic 35.0%
TAACTTTCTTCGACATACCA+TGG + chr2.1:12410912-12410931 MS.gene35740:CDS 35.0%
TCAAGGTAACGTATATAAGG+AGG - chr2.1:12411106-12411125 None:intergenic 35.0%
TCACTGTTCTTCCAAATTCT+GGG + chr2.1:12411290-12411309 MS.gene35740:CDS 35.0%
TCTCTTTCTGATTGTAGAGA+TGG + chr2.1:12412141-12412160 MS.gene35740:CDS 35.0%
TGAACTGCATCAGATTTCTT+AGG - chr2.1:12412099-12412118 None:intergenic 35.0%
TGACCTGAATAGCCATTATA+GGG - chr2.1:12411273-12411292 None:intergenic 35.0%
TGGAAAAAATGGGATTGTTG+TGG + chr2.1:12411903-12411922 MS.gene35740:CDS 35.0%
TGGTATGTCGAAGAAAGTTA+AGG - chr2.1:12410912-12410931 None:intergenic 35.0%
TGTATGATCAAATCAGAGGA+GGG + chr2.1:12411718-12411737 MS.gene35740:CDS 35.0%
TGTGTTTGTGTTTGTGTTTG+TGG - chr2.1:12410795-12410814 None:intergenic 35.0%
TTGTAACAAGCTCCTTGATT+TGG + chr2.1:12411692-12411711 MS.gene35740:CDS 35.0%
TTGTATGATCAAATCAGAGG+AGG + chr2.1:12411717-12411736 MS.gene35740:CDS 35.0%
! GAGGTAAATTTGGAACAAGA+TGG - chr2.1:12411216-12411235 None:intergenic 35.0%
!! GCTGTTTATGAGACTGATTT+TGG + chr2.1:12412063-12412082 MS.gene35740:CDS 35.0%
!! TTATGAGACTGATTTTGGGT+GGG + chr2.1:12412068-12412087 MS.gene35740:CDS 35.0%
!! TTTATGAGACTGATTTTGGG+TGG + chr2.1:12412067-12412086 MS.gene35740:CDS 35.0%
AAAGTTAAGGGGAGAATGGT+TGG - chr2.1:12410899-12410918 None:intergenic 40.0%
ACTCTATCTCTTTCATGGGA+AGG - chr2.1:12411460-12411479 None:intergenic 40.0%
AGGATAGAGAGTCTTCATCA+AGG - chr2.1:12411123-12411142 None:intergenic 40.0%
ATGATGAGGTTGGAGGAAAA+AGG - chr2.1:12411061-12411080 None:intergenic 40.0%
CATCCCTATAATGGCTATTC+AGG + chr2.1:12411267-12411286 MS.gene35740:CDS 40.0%
CATCTTGTGAATCAGATACG+AGG - chr2.1:12411180-12411199 None:intergenic 40.0%
CATTCGTGTCATCCCTATAA+TGG + chr2.1:12411258-12411277 MS.gene35740:CDS 40.0%
CTTTCTGATTGTAGAGATGG+TGG + chr2.1:12412144-12412163 MS.gene35740:CDS 40.0%
GAAGAAAGTTAAGGGGAGAA+TGG - chr2.1:12410903-12410922 None:intergenic 40.0%
GGGTGTTAAGGAAATTTGGA+GGG - chr2.1:12411084-12411103 None:intergenic 40.0%
GTCACTGTTCTTCCAAATTC+TGG + chr2.1:12411289-12411308 MS.gene35740:CDS 40.0%
GTGACCTGAATAGCCATTAT+AGG - chr2.1:12411274-12411293 None:intergenic 40.0%
GTTTGAAGGAAGTGATGAGT+TGG - chr2.1:12410986-12411005 None:intergenic 40.0%
TATCACCTTCATGGTGAACT+TGG - chr2.1:12410834-12410853 None:intergenic 40.0%
TCAAATGACATGGAATTCGC+AGG + chr2.1:12411535-12411554 MS.gene35740:CDS 40.0%
TGATGAGGTTGGAGGAAAAA+GGG - chr2.1:12411060-12411079 None:intergenic 40.0%
! AGGAAAAAGGGAAGAAGTGT+TGG - chr2.1:12411048-12411067 None:intergenic 40.0%
! AGGTGGAATTGAAGTTGGTT+TGG + chr2.1:12412167-12412186 MS.gene35740:CDS 40.0%
! ATGTTGTCTTGTTCAGTACG+AGG - chr2.1:12411241-12411260 None:intergenic 40.0%
!! AAAAAGGGAAGAAGTGTTGG+AGG - chr2.1:12411045-12411064 None:intergenic 40.0%
!! AAAAGGGAAGAAGTGTTGGA+GGG - chr2.1:12411044-12411063 None:intergenic 40.0%
!! GAATGGGAAGTGTTGTTTGA+AGG - chr2.1:12411000-12411019 None:intergenic 40.0%
!! GTATATAAGGAGGGGTGTTA+AGG - chr2.1:12411096-12411115 None:intergenic 40.0%
!! GTTGGTGATGGAACTGAATT+TGG - chr2.1:12410881-12410900 None:intergenic 40.0%
!! TATGAGACTGATTTTGGGTG+GGG + chr2.1:12412069-12412088 MS.gene35740:CDS 40.0%
!! TGCTATGGCTTTTGAAAGAG+AGG - chr2.1:12411389-12411408 None:intergenic 40.0%
AAGTCTGTTACTGTGGTTGC+TGG + chr2.1:12412027-12412046 MS.gene35740:CDS 45.0%
ACAGGGTGACAGTAAAACCA+TGG - chr2.1:12410932-12410951 None:intergenic 45.0%
ACCACAGTAACAGACTTACC+AGG - chr2.1:12412024-12412043 None:intergenic 45.0%
ACCTGGTAAGTCTGTTACTG+TGG + chr2.1:12412020-12412039 MS.gene35740:CDS 45.0%
ATGGGAAGGAAGATCAAGAG+GGG - chr2.1:12411446-12411465 None:intergenic 45.0%
ATTTGGAGGGATGATGAGGT+TGG - chr2.1:12411071-12411090 None:intergenic 45.0%
CATGGGAAGGAAGATCAAGA+GGG - chr2.1:12411447-12411466 None:intergenic 45.0%
GGAAATTTGGAGGGATGATG+AGG - chr2.1:12411075-12411094 None:intergenic 45.0%
GGGATTGTTGTGGCTTCAAT+TGG + chr2.1:12411913-12411932 MS.gene35740:CDS 45.0%
GTACGAGGTGGAGGTAAATT+TGG - chr2.1:12411226-12411245 None:intergenic 45.0%
TACAACCATCTTGCTGCAGA+CGG + chr2.1:12411331-12411350 MS.gene35740:CDS 45.0%
TCATGGGAAGGAAGATCAAG+AGG - chr2.1:12411448-12411467 None:intergenic 45.0%
TGACATGGAATTCGCAGGTT+TGG + chr2.1:12411540-12411559 MS.gene35740:CDS 45.0%
TGAGACCAAGTTCACCATGA+AGG + chr2.1:12410826-12410845 MS.gene35740:CDS 45.0%
! AGGAAGTGATGAGTTGGATG+AGG - chr2.1:12410980-12410999 None:intergenic 45.0%
! ATTTTCCGTCTGCAGCAAGA+TGG - chr2.1:12411339-12411358 None:intergenic 45.0%
! GATGAGTTGGATGAGGAAAG+TGG - chr2.1:12410973-12410992 None:intergenic 45.0%
! GATGGAACTGAATTTGGTGG+TGG - chr2.1:12410875-12410894 None:intergenic 45.0%
! GCAGTTCATCTTGATTCGTC+CGG + chr2.1:12412111-12412130 MS.gene35740:CDS 45.0%
! GGGGTGTTAAGGAAATTTGG+AGG - chr2.1:12411085-12411104 None:intergenic 45.0%
! TCTGATTGTAGAGATGGTGG+AGG + chr2.1:12412147-12412166 MS.gene35740:CDS 45.0%
! TTGTCTTGTTCAGTACGAGG+TGG - chr2.1:12411238-12411257 None:intergenic 45.0%
!! ATGAGACTGATTTTGGGTGG+GGG + chr2.1:12412070-12412089 MS.gene35740:CDS 45.0%
!! GAAGAAGTGTTGGAGGGTTA+AGG - chr2.1:12411038-12411057 None:intergenic 45.0%
!! GGAGGGGTGTTAAGGAAATT+TGG - chr2.1:12411088-12411107 None:intergenic 45.0%
!! GGTGATGGAACTGAATTTGG+TGG - chr2.1:12410878-12410897 None:intergenic 45.0%
GAGGATGTTGAAGTCTGCTG+AGG - chr2.1:12411161-12411180 None:intergenic 50.0%
GGTGGAGGTGGAATTGAAGT+TGG + chr2.1:12412162-12412181 MS.gene35740:CDS 50.0%
TCTTGTTCAGTACGAGGTGG+AGG - chr2.1:12411235-12411254 None:intergenic 50.0%
TGGGAAGGAAGATCAAGAGG+GGG - chr2.1:12411445-12411464 None:intergenic 50.0%
!! AAGGGGAGAATGGTTGGTGA+TGG - chr2.1:12410893-12410912 None:intergenic 50.0%
!! GATTGTAGAGATGGTGGAGG+TGG + chr2.1:12412150-12412169 MS.gene35740:CDS 50.0%
!! GGTTGCTGGTTCACCGAAAT+TGG + chr2.1:12412041-12412060 MS.gene35740:CDS 50.0%
GTCTGCTGAGGATTCAGCGA+CGG - chr2.1:12411149-12411168 None:intergenic 55.0%
TGAGGATTCAGCGACGGTGA+AGG - chr2.1:12411143-12411162 None:intergenic 55.0%
TGGAGGGATGATGAGGTTGG+AGG - chr2.1:12411068-12411087 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 12410785 12412263 12410785 ID=MS.gene35740
chr2.1 mRNA 12410785 12412263 12410785 ID=MS.gene35740.t1;Parent=MS.gene35740
chr2.1 exon 12410785 12412263 12410785 ID=MS.gene35740.t1.exon1;Parent=MS.gene35740.t1
chr2.1 CDS 12410785 12412263 12410785 ID=cds.MS.gene35740.t1;Parent=MS.gene35740.t1
Gene Sequence

>MS.gene35740

ATGAACACCACAAACACAAACACAAACACAAACATAACTCATGAGACCAAGTTCACCATGAAGGTGATAGAACATAGTCAAGTTGCACCACCACCAAATTCAGTTCCATCACCAACCATTCTCCCCTTAACTTTCTTCGACATACCATGGTTTTACTGTCACCCTGTTAAACGTATCTTCTTCTACCACTTTCCTCATCCAACTCATCACTTCCTTCAAACAACACTTCCCATTCTTAAACACTCACTTTCCTTAACCCTCCAACACTTCTTCCCTTTTTCCTCCAACCTCATCATCCCTCCAAATTTCCTTAACACCCCTCCTTATATACGTTACCTTGATGAAGACTCTCTATCCTTCACCGTCGCTGAATCCTCAGCAGACTTCAACATCCTCGTATCTGATTCACAAGATGCTCAAAACTGGCACCATCTTGTTCCAAATTTACCTCCACCTCGTACTGAACAAGACAACATTCGTGTCATCCCTATAATGGCTATTCAGGTCACTGTTCTTCCAAATTCTGGGTTGTCTATTTGCTTAAGTTACAACCATCTTGCTGCAGACGGAAAATCACTTCATCATTTCATGAAATTCTGGGCCTCTCTTTCAAAAGCCATAGCAACAAACAACAATAATTTGTCTCTTGAATACTCTCCCCCTCTTGATCTTCCTTCCCATGAAAGAGATAGAGTTAAAGATCTAAAGGGTCTTATACTTGTATACTTGCAAGAATTAGAAGATTCTGAATCAAATGACATGGAATTCGCAGGTTTGGTTCAAGATTCTTATGTTAACAAGATAAGAACAACTTTAGTATTGAGCTATGAACAAGTCCAGAAGTTGAAGAAATGGGTTACTGATAAATGTAAAGAGAGTTATAGAATACAACACTTGTCAACTTTTGTTGTAACAAGCTCCTTGATTTGGTTTTGTATGATCAAATCAGAGGAGGGTGATAAAAAAAGTGATCAAGGTGATTGTGTTGATGTTGATGATCACTGCTATTTTGTGTTTCTTGCAGATTGTCGTGATAGCTGTGAATTTTCATTACCAAAAACTTATTTTGGAAATTGTCTTGCATCTTATATTGTGGCTGTAAAGAGAGATGAGTTAATTGGAAAAAATGGGATTGTTGTGGCTTCAATTGGTATTGAAAAGAAGATAAGAGATTTTAAGAGTGATGCTTTGTTAGGAGCTGAAACATTGATGTCTGATTATAGGGAAATATCAAAACCTGGTAAGTCTGTTACTGTGGTTGCTGGTTCACCGAAATTGGCTGTTTATGAGACTGATTTTGGGTGGGGGAAGCCTAAGAAATCTGATGCAGTTCATCTTGATTCGTCCGGTTCGATTTCTCTTTCTGATTGTAGAGATGGTGGAGGTGGAATTGAAGTTGGTTTGGCTCTTGAGATGTCTAGAATGACTAATTTCATTAACATCTTTCAAGAACAACTTGATAATATTTGTAGCATGTGA
Protein sequence

>MS.gene35740.t1

MNTTNTNTNTNITHETKFTMKVIEHSQVAPPPNSVPSPTILPLTFFDIPWFYCHPVKRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHFFPFSSNLIIPPNFLNTPPYIRYLDEDSLSFTVAESSADFNILVSDSQDAQNWHHLVPNLPPPRTEQDNIRVIPIMAIQVTVLPNSGLSICLSYNHLAADGKSLHHFMKFWASLSKAIATNNNNLSLEYSPPLDLPSHERDRVKDLKGLILVYLQELEDSESNDMEFAGLVQDSYVNKIRTTLVLSYEQVQKLKKWVTDKCKESYRIQHLSTFVVTSSLIWFCMIKSEEGDKKSDQGDCVDVDDHCYFVFLADCRDSCEFSLPKTYFGNCLASYIVAVKRDELIGKNGIVVASIGIEKKIRDFKSDALLGAETLMSDYREISKPGKSVTVVAGSPKLAVYETDFGWGKPKKSDAVHLDSSGSISLSDCRDGGGGIEVGLALEMSRMTNFINIFQEQLDNICSM