AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35744

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35744.t1 MTR_2g089670 89.540 478 48 1 1 476 6 483 0.0 845
MS.gene35744.t1 MTR_2g089765 71.516 488 114 7 5 476 10 488 0.0 702
MS.gene35744.t1 MTR_8g012750 64.449 481 145 14 15 474 1 476 0.0 578
MS.gene35744.t1 MTR_2g089665 60.839 429 73 3 17 445 2 335 2.15e-177 501
MS.gene35744.t1 MTR_7g015860 44.142 478 225 11 17 472 5 462 3.88e-125 372
MS.gene35744.t1 MTR_3g028210 37.527 469 272 10 17 473 8 467 1.69e-94 294
MS.gene35744.t1 MTR_7g014330 38.758 467 251 15 18 466 3 452 4.56e-93 290
MS.gene35744.t1 MTR_2g089650 36.975 476 257 15 17 470 9 463 2.97e-90 283
MS.gene35744.t1 MTR_6g015850 34.504 484 282 10 1 473 1 460 2.01e-86 273
MS.gene35744.t1 MTR_6g015815 35.456 471 273 10 18 473 9 463 2.38e-86 273
MS.gene35744.t1 MTR_2g089755 36.162 495 271 16 1 470 1 475 4.92e-86 272
MS.gene35744.t1 MTR_7g014230 36.910 466 261 14 18 466 5 454 6.88e-84 266
MS.gene35744.t1 MTR_7g014250 36.017 472 267 14 18 471 3 457 2.38e-83 265
MS.gene35744.t1 MTR_2g089735 36.613 437 243 13 54 470 39 461 1.39e-80 258
MS.gene35744.t1 MTR_3g087640 35.010 477 272 14 18 470 10 472 1.53e-80 258
MS.gene35744.t1 MTR_6g015830 33.898 472 283 11 16 473 7 463 3.73e-78 251
MS.gene35744.t1 MTR_6g015320 33.775 453 273 11 25 466 14 450 5.00e-76 246
MS.gene35744.t1 MTR_6g015315 33.333 429 255 9 52 466 37 448 7.42e-74 240
MS.gene35744.t1 MTR_7g014200 34.232 482 269 18 12 466 4 464 2.90e-72 236
MS.gene35744.t1 MTR_7g014160 31.352 488 280 12 12 466 4 469 3.14e-72 236
MS.gene35744.t1 MTR_7g014610 33.881 487 277 14 17 475 8 477 3.34e-72 236
MS.gene35744.t1 MTR_7g013850 31.906 467 265 14 41 470 30 480 4.18e-64 215
MS.gene35744.t1 MTR_7g014620 32.143 448 257 11 36 466 11 428 9.45e-59 200
MS.gene35744.t1 MTR_7g014360 30.435 391 233 10 86 466 21 382 9.70e-51 177
MS.gene35744.t1 MTR_3g435300 38.768 276 141 12 18 281 4 263 3.04e-42 151
MS.gene35744.t1 MTR_6g015310 27.248 367 204 9 89 448 23 333 1.52e-34 132
MS.gene35744.t1 MTR_7g014670 36.757 185 113 2 286 466 71 255 6.03e-34 129
MS.gene35744.t1 MTR_7g014310 29.091 330 177 10 125 451 29 304 3.28e-33 128
MS.gene35744.t1 MTR_2g089745 71.605 81 23 0 396 476 3 83 1.26e-30 114
MS.gene35744.t1 MTR_7g014630 31.359 287 164 11 17 286 9 279 8.87e-30 119
MS.gene35744.t1 MTR_7g014180 38.547 179 95 6 17 191 7 174 3.08e-25 102
MS.gene35744.t1 MTR_4g022670 25.962 416 273 17 16 422 3 392 1.17e-19 91.7
MS.gene35744.t1 MTR_8g041770 27.851 377 233 14 55 422 44 390 1.72e-19 91.3
MS.gene35744.t1 MTR_4g022720 25.412 425 258 17 16 422 3 386 3.08e-18 87.4
MS.gene35744.t1 MTR_4g094835 25.630 476 272 20 15 455 2 430 1.35e-17 85.5
MS.gene35744.t1 MTR_8g079710 24.279 416 237 17 37 422 26 393 3.64e-17 84.0
MS.gene35744.t1 MTR_3g088420 25.248 404 258 13 29 422 15 384 3.94e-17 84.0
MS.gene35744.t1 MTR_4g007540 22.912 419 279 15 57 462 39 426 6.40e-17 83.2
MS.gene35744.t1 MTR_4g022825 25.060 415 236 15 38 422 22 391 8.24e-17 82.8
MS.gene35744.t1 MTR_4g022800 26.776 366 241 15 67 422 45 393 1.40e-16 82.4
MS.gene35744.t1 MTR_7g014210 37.931 116 68 3 328 440 24 138 1.77e-16 77.4
MS.gene35744.t1 MTR_8g075610 25.984 381 231 18 57 422 30 374 7.26e-16 79.7
MS.gene35744.t1 MTR_3g070170 22.803 421 269 14 71 459 60 456 8.12e-16 80.1
MS.gene35744.t1 MTR_3g026310 26.161 409 247 16 38 422 22 399 1.68e-15 79.0
MS.gene35744.t1 MTR_7g014205 37.391 115 58 3 326 438 18 120 3.23e-15 72.4
MS.gene35744.t1 MTR_4g094842 23.043 460 306 16 15 455 2 432 6.33e-15 77.0
MS.gene35744.t1 MTR_7g085930 24.440 491 305 20 17 473 6 464 8.37e-15 77.0
MS.gene35744.t1 MTR_7g014340 59.420 69 26 2 18 85 3 70 1.04e-14 70.1
MS.gene35744.t1 MTR_8g096530 25.063 399 253 13 76 462 58 422 1.27e-14 76.3
MS.gene35744.t1 MTR_3g098980 24.181 397 258 14 76 462 65 428 1.46e-14 75.9
MS.gene35744.t1 MTR_3g435290 35.185 108 67 2 351 458 1 105 2.98e-14 69.7
MS.gene35744.t1 MTR_7g014220 59.375 64 25 1 32 95 10 72 4.90e-14 67.8
MS.gene35744.t1 MTR_8g079970 23.312 459 302 15 15 462 1 420 1.24e-13 73.2
MS.gene35744.t1 MTR_4g022290 22.892 415 249 17 34 422 24 393 1.26e-13 73.2
MS.gene35744.t1 MTR_7g085990 25.050 499 296 21 17 475 2 462 1.23e-12 70.1
MS.gene35744.t1 MTR_4g094828 23.833 407 257 17 36 422 25 398 1.52e-12 69.7
MS.gene35744.t1 MTR_3g101960 23.060 464 305 20 16 459 5 436 7.43e-12 67.8
MS.gene35744.t1 MTR_4g022760 23.861 373 247 12 17 381 4 347 2.71e-11 65.5
MS.gene35744.t1 MTR_4g097090 23.393 389 247 13 57 421 45 406 9.78e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35744.t1 AT1G03940 37.393 468 260 13 18 467 9 461 1.12e-99 307
MS.gene35744.t1 AT3G29670 34.188 468 277 15 15 470 1 449 2.28e-72 236
MS.gene35744.t1 AT1G03495 37.752 347 193 11 18 353 9 343 8.41e-68 221
MS.gene35744.t1 AT5G61160 32.196 469 290 13 15 472 1 452 2.38e-63 212
MS.gene35744.t1 AT3G29635 31.770 469 292 12 15 470 1 454 1.33e-62 211
MS.gene35744.t1 AT3G29680 31.441 458 293 10 15 466 1 443 2.74e-60 204
MS.gene35744.t1 AT5G39090 31.924 473 272 17 16 468 4 446 5.64e-58 198
MS.gene35744.t1 AT3G29590 32.353 476 267 20 12 466 3 444 1.51e-55 192
MS.gene35744.t1 AT5G39080 29.916 478 292 18 16 470 4 461 1.76e-55 192
MS.gene35744.t1 AT5G39050 30.233 473 295 14 16 468 9 466 1.05e-51 182
MS.gene35744.t1 AT5G23940 26.415 477 284 22 17 463 3 442 1.61e-20 94.7
MS.gene35744.t1 AT5G38130 24.364 472 304 19 9 463 16 451 9.31e-19 89.0
MS.gene35744.t1 AT3G29690 30.872 149 97 2 319 466 31 174 1.28e-17 81.3
MS.gene35744.t1 AT2G19070 23.454 388 247 12 59 421 40 402 2.39e-17 84.7
MS.gene35744.t1 AT3G50300 26.402 428 254 18 17 422 4 392 4.99e-17 83.6
MS.gene35744.t1 AT5G63560 22.931 423 267 14 59 465 44 423 1.55e-16 82.0
MS.gene35744.t1 AT3G50280 25.234 428 259 16 17 422 4 392 4.06e-15 77.8
MS.gene35744.t1 AT5G42830 24.312 436 272 19 36 454 36 430 4.75e-14 74.3
MS.gene35744.t1 AT3G29636 29.381 194 80 7 265 456 30 168 1.31e-13 70.1
MS.gene35744.t1 AT5G48930 21.667 420 283 17 57 462 39 426 4.48e-13 71.2
MS.gene35744.t1 AT5G01210 25.455 330 210 14 161 464 141 460 2.93e-12 68.9
MS.gene35744.t1 AT1G31490 22.018 436 251 17 58 455 43 427 4.93e-11 65.1

Find 98 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTTCTTTGACATTTCT+TGG 0.109669 2.1:-12441773 MS.gene35744:CDS
AACTCTGTTAAAATGGTTTC+TGG 0.155098 2.1:-12440697 MS.gene35744:CDS
TCATTACCGAAAACTTATTT+TGG 0.167042 2.1:-12440892 MS.gene35744:CDS
ACCAGGTAACTCTGTTAAAA+TGG 0.224927 2.1:-12440704 MS.gene35744:CDS
GGAGGGGTGTTATGGGAATT+TGG 0.229278 2.1:+12441597 None:intergenic
GGTAGAAGAAGATGCGTTTA+AGG 0.233797 2.1:+12441733 None:intergenic
GATGTTTATGAGACTGATTT+TGG 0.265860 2.1:-12440661 MS.gene35744:CDS
AAACGTTGATGCCTGATTAT+AGG 0.285361 2.1:-12440738 MS.gene35744:CDS
GTTGGTGATGGAAGTGAATT+TGG 0.295109 2.1:+12441807 None:intergenic
ATTCACAAGAAGCTCTAAAT+TGG 0.300727 2.1:-12441494 MS.gene35744:CDS
GTAAAGAGAGATGAGTTAAT+TGG 0.307415 2.1:-12440841 MS.gene35744:CDS
TGCACTACATCAGATTTCTT+TGG 0.324816 2.1:+12440628 None:intergenic
TTTATTATTTCCCTATAATC+AGG 0.339043 2.1:+12440727 None:intergenic
TTGTAACATGTTCCTTGATT+TGG 0.350808 2.1:-12440999 MS.gene35744:CDS
GTATATAAGGAGGGGTGTTA+TGG 0.354673 2.1:+12441589 None:intergenic
AACGTTGATGCCTGATTATA+GGG 0.364124 2.1:-12440737 MS.gene35744:CDS
TCTTGTAAGTAGGTGAGTTT+AGG 0.364713 2.1:+12441192 None:intergenic
GATTTCATCAATATCTATAA+AGG 0.370999 2.1:-12440511 MS.gene35744:CDS
GTATGAGGTGAAGGCAAGTT+AGG 0.400483 2.1:+12441459 None:intergenic
GTTGTTGTTTGCTATAGCTT+TGG 0.405312 2.1:+12441287 None:intergenic
CATACAGAGAAGCCAGAGTT+TGG 0.410447 2.1:+12441381 None:intergenic
GAAGTAGTGTTGGAGGGTTA+AGG 0.415459 2.1:+12441647 None:intergenic
TATATAAGGAGGGGTGTTAT+GGG 0.421407 2.1:+12441590 None:intergenic
ATTTGGAGGGATGATGAGGT+TGG 0.424629 2.1:+12441614 None:intergenic
GGAAAGTGAGTGTTTGAGAA+TGG 0.424878 2.1:+12441668 None:intergenic
GATGAGTTGGATGTGGAAAA+TGG 0.428885 2.1:+12441712 None:intergenic
GATGATGAGGTTGGAGGTGA+AGG 0.429029 2.1:+12441623 None:intergenic
GAAGCCAGAGTTTGGTAGAA+TGG 0.432626 2.1:+12441389 None:intergenic
TTTAAGAGTGATGCTTTGTT+GGG 0.435490 2.1:-12440766 MS.gene35744:CDS
TCATCAAGGTAACGTATATA+AGG 0.436544 2.1:+12441576 None:intergenic
TCTCTTTCTGATTGTAGAGA+TGG 0.439448 2.1:-12440583 MS.gene35744:CDS
GTCTCATAAACATCAAGTTT+AGG 0.448315 2.1:+12440670 None:intergenic
AGGTGGAATTGAAGTTGGTT+TGG 0.449191 2.1:-12440557 MS.gene35744:CDS
TGAGAATGGGAAGTGTTGTT+TGG 0.450918 2.1:+12441682 None:intergenic
GTAGAAGAAGATGCGTTTAA+GGG 0.457685 2.1:+12441734 None:intergenic
TACCATACAAAACCAAATCA+AGG 0.462671 2.1:+12440987 None:intergenic
ACTCTGTTAAAATGGTTTCT+GGG 0.468209 2.1:-12440696 MS.gene35744:CDS
GAAAGTGAGTGTTTGAGAAT+GGG 0.469129 2.1:+12441669 None:intergenic
CTTTCTGATTGTAGAGATGG+TGG 0.471103 2.1:-12440580 MS.gene35744:CDS
AAAGAAAGTGAGAGGGAGAA+TGG 0.474809 2.1:+12441785 None:intergenic
TAGGTGAGTTTAGGATCCAT+TGG 0.475176 2.1:+12441201 None:intergenic
AGGTGAAGGGGAAGTAGTGT+TGG 0.476320 2.1:+12441637 None:intergenic
GGTGGAGGTGGAATTGAAGT+TGG 0.477895 2.1:-12440562 MS.gene35744:CDS
GGGAATTTGGAGGGATGATG+AGG 0.494796 2.1:+12441610 None:intergenic
GAAGAAGATGCGTTTAAGGG+GGG 0.500670 2.1:+12441737 None:intergenic
AAAGTGAGAGGGAGAATGGT+TGG 0.508062 2.1:+12441789 None:intergenic
TACATGTATCGTTCCTCTCA+TGG 0.508285 2.1:-12441424 MS.gene35744:CDS
TAGAAGAAGATGCGTTTAAG+GGG 0.508756 2.1:+12441735 None:intergenic
TGAAGGGGAAGTAGTGTTGG+AGG 0.513945 2.1:+12441640 None:intergenic
GGTGATGGAAGTGAATTTGG+TGG 0.516073 2.1:+12441810 None:intergenic
TGGTAGAATGGTGATTTGAA+TGG 0.518937 2.1:+12441401 None:intergenic
GATGAGTTAATTGGAAAAGA+CGG 0.519523 2.1:-12440832 MS.gene35744:CDS
TGATGAGGTTGGAGGTGAAG+GGG 0.522375 2.1:+12441625 None:intergenic
GGGGTGTTATGGGAATTTGG+AGG 0.522455 2.1:+12441600 None:intergenic
AAGTTGGTTTGGCTCTTGAG+AGG 0.523983 2.1:-12440546 MS.gene35744:CDS
ATGATGAGGTTGGAGGTGAA+GGG 0.530666 2.1:+12441624 None:intergenic
AGAGGGAGAATGGTTGGTGA+TGG 0.530934 2.1:+12441795 None:intergenic
AGAAGAAGATGCGTTTAAGG+GGG 0.531371 2.1:+12441736 None:intergenic
AGGTGAGTTTAGGATCCATT+GGG 0.539344 2.1:+12441202 None:intergenic
TTTAAACACGTTGTTGCAGA+CGG 0.540631 2.1:-12441351 MS.gene35744:CDS
GATTGTAGAGATGGTGGAGG+TGG 0.541712 2.1:-12440574 MS.gene35744:CDS
TGGAGGGATGATGAGGTTGG+AGG 0.545689 2.1:+12441617 None:intergenic
GTTTGGAGGAAGTGATGAGT+TGG 0.551364 2.1:+12441699 None:intergenic
TTGTCTTGCATCTTATATTG+TGG 0.552776 2.1:-12440866 MS.gene35744:CDS
AATCTATCTCTTTCATGAGA+AGG 0.553262 2.1:+12441234 None:intergenic
AAGAAGATGCGTTTAAGGGG+GGG 0.554836 2.1:+12441738 None:intergenic
AATATCTATAAAGGACAACT+TGG 0.562582 2.1:-12440502 MS.gene35744:CDS
TGGAAAAGACGGTATTGTTG+TGG 0.564685 2.1:-12440821 MS.gene35744:CDS
GAAATGTCAAAGAAAGTGAG+AGG 0.565539 2.1:+12441777 None:intergenic
AGGAAGTGATGAGTTGGATG+TGG 0.573881 2.1:+12441705 None:intergenic
ATCACCATTCTACCAAACTC+TGG 0.574194 2.1:-12441393 MS.gene35744:CDS
TGCATCTCGAACGAGACTTG+TGG 0.575560 2.1:+12441137 None:intergenic
CAAGGTAACGTATATAAGGA+GGG 0.577627 2.1:+12441580 None:intergenic
TAGATTACTAAAACACCCAA+TGG 0.582593 2.1:-12441217 MS.gene35744:CDS
AATTTGATCTCGTGATGTTG+AGG 0.584229 2.1:+12441888 None:intergenic
AAATGTCAAAGAAAGTGAGA+GGG 0.588095 2.1:+12441778 None:intergenic
TGGCAGCAAATGCTATTGAA+AGG 0.588748 2.1:-12440801 MS.gene35744:CDS
GGGTGTTATGGGAATTTGGA+GGG 0.588819 2.1:+12441601 None:intergenic
TCAAGGTAACGTATATAAGG+AGG 0.593641 2.1:+12441579 None:intergenic
GAATGGGAAGTGTTGTTTGG+AGG 0.595204 2.1:+12441685 None:intergenic
TCACCTCATACAGAACAAAA+CGG 0.603095 2.1:-12441447 MS.gene35744:CDS
ATCTTGTATATCTTGTAAGT+AGG 0.603551 2.1:+12441182 None:intergenic
TGAGGATTCAGCAATGGTGA+AGG 0.609931 2.1:+12441542 None:intergenic
TCATGAGAAGGAAGATCAAG+AGG 0.612643 2.1:+12441246 None:intergenic
GAAGGGGAAGTAGTGTTGGA+GGG 0.619026 2.1:+12441641 None:intergenic
GATGGAAGTGAATTTGGTGG+TGG 0.624086 2.1:+12441813 None:intergenic
TCTGATTGTAGAGATGGTGG+AGG 0.625713 2.1:-12440577 MS.gene35744:CDS
TGAGAAGGAAGATCAAGAGG+TGG 0.626715 2.1:+12441249 None:intergenic
TAACGAAACAGTAACTGTGA+AGG 0.650697 2.1:-12441859 MS.gene35744:CDS
AAGGCAAGTTAGGAACAAGA+TGG 0.656225 2.1:+12441469 None:intergenic
GTCTGCTGAGGATTCAGCAA+TGG 0.656353 2.1:+12441536 None:intergenic
AGGAGATAGAGTCTTCATCA+AGG 0.656629 2.1:+12441562 None:intergenic
TAGTTTAGTATTGAGTCGTG+AGG 0.661773 2.1:-12441091 MS.gene35744:CDS
GTGATTTGAATGGCCATGAG+AGG 0.670330 2.1:+12441411 None:intergenic
TATAGGGAAATAATAAAACC+AGG 0.671327 2.1:-12440721 MS.gene35744:CDS
AAGGTAACGTATATAAGGAG+GGG 0.677863 2.1:+12441581 None:intergenic
GAGAATGTTGAAGTCTGCTG+AGG 0.705294 2.1:+12441524 None:intergenic
ACAACAAAAGTTGACATGTG+TGG 0.716536 2.1:+12441018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATCATTTTATGAAATTTT+GGG - chr2.1:12441055-12441074 MS.gene35744:CDS 15.0%
!!! TTCATCATTTTATGAAATTT+TGG - chr2.1:12441054-12441073 MS.gene35744:CDS 15.0%
!! GATTTCATCAATATCTATAA+AGG - chr2.1:12441863-12441882 MS.gene35744:CDS 20.0%
!! TTTATTATTTCCCTATAATC+AGG + chr2.1:12441650-12441669 None:intergenic 20.0%
!!! AGATATACAAGATTTTGTAT+TGG - chr2.1:12441202-12441221 MS.gene35744:CDS 20.0%
!!! CAATTTCCAAAATAAGTTTT+CGG + chr2.1:12441491-12441510 None:intergenic 20.0%
! AAGTTCAAAAAATGAAGAGA+TGG - chr2.1:12441306-12441325 MS.gene35744:CDS 25.0%
! AATATCTATAAAGGACAACT+TGG - chr2.1:12441872-12441891 MS.gene35744:CDS 25.0%
! AGTTCAAAAAATGAAGAGAT+GGG - chr2.1:12441307-12441326 MS.gene35744:CDS 25.0%
! ATCTTGTATATCTTGTAAGT+AGG + chr2.1:12441195-12441214 None:intergenic 25.0%
! TATAGGGAAATAATAAAACC+AGG - chr2.1:12441653-12441672 MS.gene35744:CDS 25.0%
!! AGATTTTGTATTGGAAATCA+TGG - chr2.1:12441211-12441230 MS.gene35744:CDS 25.0%
!! TCATTACCGAAAACTTATTT+TGG - chr2.1:12441482-12441501 MS.gene35744:CDS 25.0%
!!! ATGTTTATGAGACTGATTTT+GGG - chr2.1:12441714-12441733 MS.gene35744:CDS 25.0%
AAATGTCAAAGAAAGTGAGA+GGG + chr2.1:12440599-12440618 None:intergenic 30.0%
AACTCTGTTAAAATGGTTTC+TGG - chr2.1:12441677-12441696 MS.gene35744:CDS 30.0%
AATCTATCTCTTTCATGAGA+AGG + chr2.1:12441143-12441162 None:intergenic 30.0%
ACTCTGTTAAAATGGTTTCT+GGG - chr2.1:12441678-12441697 MS.gene35744:CDS 30.0%
GATGAGTTAATTGGAAAAGA+CGG - chr2.1:12441542-12441561 MS.gene35744:CDS 30.0%
GTAAAGAGAGATGAGTTAAT+TGG - chr2.1:12441533-12441552 MS.gene35744:CDS 30.0%
GTCTCATAAACATCAAGTTT+AGG + chr2.1:12441707-12441726 None:intergenic 30.0%
TACCATACAAAACCAAATCA+AGG + chr2.1:12441390-12441409 None:intergenic 30.0%
TAGATTACTAAAACACCCAA+TGG - chr2.1:12441157-12441176 MS.gene35744:CDS 30.0%
TCACTTTCTTTGACATTTCT+TGG - chr2.1:12440601-12440620 MS.gene35744:CDS 30.0%
TCATCAAGGTAACGTATATA+AGG + chr2.1:12440801-12440820 None:intergenic 30.0%
TTGTAACATGTTCCTTGATT+TGG - chr2.1:12441375-12441394 MS.gene35744:CDS 30.0%
TTGTCTTGCATCTTATATTG+TGG - chr2.1:12441508-12441527 MS.gene35744:CDS 30.0%
! GTTTTCGGTAATGAAAATTC+AGG + chr2.1:12441476-12441495 None:intergenic 30.0%
! TTTAAGAGTGATGCTTTGTT+GGG - chr2.1:12441608-12441627 MS.gene35744:CDS 30.0%
!! ATTCACAAGAAGCTCTAAAT+TGG - chr2.1:12440880-12440899 MS.gene35744:CDS 30.0%
!! GATGTTTATGAGACTGATTT+TGG - chr2.1:12441713-12441732 MS.gene35744:CDS 30.0%
!! TTTTAAGAGTGATGCTTTGT+TGG - chr2.1:12441607-12441626 MS.gene35744:CDS 30.0%
!!! TTCCTTGATTTGGTTTTGTA+TGG - chr2.1:12441385-12441404 MS.gene35744:CDS 30.0%
AAACGTTGATGCCTGATTAT+AGG - chr2.1:12441636-12441655 MS.gene35744:CDS 35.0%
AACGTTGATGCCTGATTATA+GGG - chr2.1:12441637-12441656 MS.gene35744:CDS 35.0%
AAGGTAACGTATATAAGGAG+GGG + chr2.1:12440796-12440815 None:intergenic 35.0%
AATTTGATCTCGTGATGTTG+AGG + chr2.1:12440489-12440508 None:intergenic 35.0%
ACAACAAAAGTTGACATGTG+TGG + chr2.1:12441359-12441378 None:intergenic 35.0%
ACCAGGTAACTCTGTTAAAA+TGG - chr2.1:12441670-12441689 MS.gene35744:CDS 35.0%
CAAGGTAACGTATATAAGGA+GGG + chr2.1:12440797-12440816 None:intergenic 35.0%
GAAAGTGAGTGTTTGAGAAT+GGG + chr2.1:12440708-12440727 None:intergenic 35.0%
GAAATGTCAAAGAAAGTGAG+AGG + chr2.1:12440600-12440619 None:intergenic 35.0%
GTAGAAGAAGATGCGTTTAA+GGG + chr2.1:12440643-12440662 None:intergenic 35.0%
TAACGAAACAGTAACTGTGA+AGG - chr2.1:12440515-12440534 MS.gene35744:CDS 35.0%
TAGAAGAAGATGCGTTTAAG+GGG + chr2.1:12440642-12440661 None:intergenic 35.0%
TCAAGGTAACGTATATAAGG+AGG + chr2.1:12440798-12440817 None:intergenic 35.0%
TCACCTCATACAGAACAAAA+CGG - chr2.1:12440927-12440946 MS.gene35744:CDS 35.0%
TCTCTTTCTGATTGTAGAGA+TGG - chr2.1:12441791-12441810 MS.gene35744:CDS 35.0%
TCTTGTAAGTAGGTGAGTTT+AGG + chr2.1:12441185-12441204 None:intergenic 35.0%
TGCACTACATCAGATTTCTT+TGG + chr2.1:12441749-12441768 None:intergenic 35.0%
TGGTAGAATGGTGATTTGAA+TGG + chr2.1:12440976-12440995 None:intergenic 35.0%
TTTAAACACGTTGTTGCAGA+CGG - chr2.1:12441023-12441042 MS.gene35744:CDS 35.0%
! TAGTTTAGTATTGAGTCGTG+AGG - chr2.1:12441283-12441302 MS.gene35744:CDS 35.0%
! TTTTGTTCTGTATGAGGTGA+AGG + chr2.1:12440927-12440946 None:intergenic 35.0%
!! ACCATTTTAACAGAGTTACC+TGG + chr2.1:12441674-12441693 None:intergenic 35.0%
!! GTTGTTGTTTGCTATAGCTT+TGG + chr2.1:12441090-12441109 None:intergenic 35.0%
!! TATATAAGGAGGGGTGTTAT+GGG + chr2.1:12440787-12440806 None:intergenic 35.0%
!! TTATGAGACTGATTTTGGGT+GGG - chr2.1:12441718-12441737 MS.gene35744:CDS 35.0%
!! TTTATGAGACTGATTTTGGG+TGG - chr2.1:12441717-12441736 MS.gene35744:CDS 35.0%
AAAGAAAGTGAGAGGGAGAA+TGG + chr2.1:12440592-12440611 None:intergenic 40.0%
AAGGCAAGTTAGGAACAAGA+TGG + chr2.1:12440908-12440927 None:intergenic 40.0%
AGAAGAAGATGCGTTTAAGG+GGG + chr2.1:12440641-12440660 None:intergenic 40.0%
AGGAGATAGAGTCTTCATCA+AGG + chr2.1:12440815-12440834 None:intergenic 40.0%
ATCACCATTCTACCAAACTC+TGG - chr2.1:12440981-12441000 MS.gene35744:CDS 40.0%
CTTTCTGATTGTAGAGATGG+TGG - chr2.1:12441794-12441813 MS.gene35744:CDS 40.0%
GGAAAGTGAGTGTTTGAGAA+TGG + chr2.1:12440709-12440728 None:intergenic 40.0%
GGTAGAAGAAGATGCGTTTA+AGG + chr2.1:12440644-12440663 None:intergenic 40.0%
TACATGTATCGTTCCTCTCA+TGG - chr2.1:12440950-12440969 MS.gene35744:CDS 40.0%
TCATGAGAAGGAAGATCAAG+AGG + chr2.1:12441131-12441150 None:intergenic 40.0%
TGGAAAAGACGGTATTGTTG+TGG - chr2.1:12441553-12441572 MS.gene35744:CDS 40.0%
TGGCAGCAAATGCTATTGAA+AGG - chr2.1:12441573-12441592 MS.gene35744:CDS 40.0%
! AGGTGAGTTTAGGATCCATT+GGG + chr2.1:12441175-12441194 None:intergenic 40.0%
! AGGTGGAATTGAAGTTGGTT+TGG - chr2.1:12441817-12441836 MS.gene35744:CDS 40.0%
! GATGAGTTGGATGTGGAAAA+TGG + chr2.1:12440665-12440684 None:intergenic 40.0%
! TAGGTGAGTTTAGGATCCAT+TGG + chr2.1:12441176-12441195 None:intergenic 40.0%
!! GTACCGTTTTGTTCTGTATG+AGG + chr2.1:12440933-12440952 None:intergenic 40.0%
!! GTATATAAGGAGGGGTGTTA+TGG + chr2.1:12440788-12440807 None:intergenic 40.0%
!! GTTGGTGATGGAAGTGAATT+TGG + chr2.1:12440570-12440589 None:intergenic 40.0%
!! TATGAGACTGATTTTGGGTG+GGG - chr2.1:12441719-12441738 MS.gene35744:CDS 40.0%
!! TGAGAATGGGAAGTGTTGTT+TGG + chr2.1:12440695-12440714 None:intergenic 40.0%
AAAGTGAGAGGGAGAATGGT+TGG + chr2.1:12440588-12440607 None:intergenic 45.0%
AAGAAGATGCGTTTAAGGGG+GGG + chr2.1:12440639-12440658 None:intergenic 45.0%
ATGATGAGGTTGGAGGTGAA+GGG + chr2.1:12440753-12440772 None:intergenic 45.0%
ATTTGGAGGGATGATGAGGT+TGG + chr2.1:12440763-12440782 None:intergenic 45.0%
CATACAGAGAAGCCAGAGTT+TGG + chr2.1:12440996-12441015 None:intergenic 45.0%
GAAGAAGATGCGTTTAAGGG+GGG + chr2.1:12440640-12440659 None:intergenic 45.0%
GAAGCCAGAGTTTGGTAGAA+TGG + chr2.1:12440988-12441007 None:intergenic 45.0%
GAGAATGTTGAAGTCTGCTG+AGG + chr2.1:12440853-12440872 None:intergenic 45.0%
GTATGAGGTGAAGGCAAGTT+AGG + chr2.1:12440918-12440937 None:intergenic 45.0%
GTGATTTGAATGGCCATGAG+AGG + chr2.1:12440966-12440985 None:intergenic 45.0%
GTTTGGAGGAAGTGATGAGT+TGG + chr2.1:12440678-12440697 None:intergenic 45.0%
TGAGAAGGAAGATCAAGAGG+TGG + chr2.1:12441128-12441147 None:intergenic 45.0%
TGAGGATTCAGCAATGGTGA+AGG + chr2.1:12440835-12440854 None:intergenic 45.0%
! AGGAAGTGATGAGTTGGATG+TGG + chr2.1:12440672-12440691 None:intergenic 45.0%
! GAAGTAGTGTTGGAGGGTTA+AGG + chr2.1:12440730-12440749 None:intergenic 45.0%
! GATGGAAGTGAATTTGGTGG+TGG + chr2.1:12440564-12440583 None:intergenic 45.0%
! GGGTGTTATGGGAATTTGGA+GGG + chr2.1:12440776-12440795 None:intergenic 45.0%
! TCTGATTGTAGAGATGGTGG+AGG - chr2.1:12441797-12441816 MS.gene35744:CDS 45.0%
!! AAGTTGGTTTGGCTCTTGAG+AGG - chr2.1:12441828-12441847 MS.gene35744:CDS 45.0%
!! GAATGGGAAGTGTTGTTTGG+AGG + chr2.1:12440692-12440711 None:intergenic 45.0%
!! GGTGATGGAAGTGAATTTGG+TGG + chr2.1:12440567-12440586 None:intergenic 45.0%
AGGTGAAGGGGAAGTAGTGT+TGG + chr2.1:12440740-12440759 None:intergenic 50.0%
GATGATGAGGTTGGAGGTGA+AGG + chr2.1:12440754-12440773 None:intergenic 50.0%
GGGAATTTGGAGGGATGATG+AGG + chr2.1:12440767-12440786 None:intergenic 50.0%
GGTGGAGGTGGAATTGAAGT+TGG - chr2.1:12441812-12441831 MS.gene35744:CDS 50.0%
GTCTGCTGAGGATTCAGCAA+TGG + chr2.1:12440841-12440860 None:intergenic 50.0%
TGATGAGGTTGGAGGTGAAG+GGG + chr2.1:12440752-12440771 None:intergenic 50.0%
TGCATCTCGAACGAGACTTG+TGG + chr2.1:12441240-12441259 None:intergenic 50.0%
! GAAGGGGAAGTAGTGTTGGA+GGG + chr2.1:12440736-12440755 None:intergenic 50.0%
! GGGGTGTTATGGGAATTTGG+AGG + chr2.1:12440777-12440796 None:intergenic 50.0%
! TGAAGGGGAAGTAGTGTTGG+AGG + chr2.1:12440737-12440756 None:intergenic 50.0%
!! AGAGGGAGAATGGTTGGTGA+TGG + chr2.1:12440582-12440601 None:intergenic 50.0%
!! GATTGTAGAGATGGTGGAGG+TGG - chr2.1:12441800-12441819 MS.gene35744:CDS 50.0%
!! GGAGGGGTGTTATGGGAATT+TGG + chr2.1:12440780-12440799 None:intergenic 50.0%
TGGAGGGATGATGAGGTTGG+AGG + chr2.1:12440760-12440779 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 12440483 12441913 12440483 ID=MS.gene35744
chr2.1 mRNA 12440483 12441913 12440483 ID=MS.gene35744.t1;Parent=MS.gene35744
chr2.1 exon 12440483 12441913 12440483 ID=MS.gene35744.t1.exon1;Parent=MS.gene35744.t1
chr2.1 CDS 12440483 12441913 12440483 ID=cds.MS.gene35744.t1;Parent=MS.gene35744.t1
Gene Sequence

>MS.gene35744

ATGCCTCAACATCACGAGATCAAATTCTATCATAACGAAACAGTAACTGTGAAGGTGATAGAGCAGAGTCAAGTTTCACCACCACCAAATTCACTTCCATCACCAACCATTCTCCCTCTCACTTTCTTTGACATTTCTTGGTTTTACTGCAAACCCCCCCTTAAACGCATCTTCTTCTACCATTTTCCACATCCAACTCATCACTTCCTCCAAACAACACTTCCCATTCTCAAACACTCACTTTCCTTAACCCTCCAACACTACTTCCCCTTCACCTCCAACCTCATCATCCCTCCAAATTCCCATAACACCCCTCCTTATATACGTTACCTTGATGAAGACTCTATCTCCTTCACCATTGCTGAATCCTCAGCAGACTTCAACATTCTCATATCTGATTCACAAGAAGCTCTAAATTGGCACCATCTTGTTCCTAACTTGCCTTCACCTCATACAGAACAAAACGGTACATGTATCGTTCCTCTCATGGCCATTCAAATCACCATTCTACCAAACTCTGGCTTCTCTGTATGTCTCGCGTTTAAACACGTTGTTGCAGACGGAAAATCACTTCATCATTTTATGAAATTTTGGGCATTTGCTTCCAAAGCTATAGCAAACAACAACGATTTGTCTCATTCTCCACCTCTTGATCTTCCTTCTCATGAAAGAGATAGATTACTAAAACACCCAATGGATCCTAAACTCACCTACTTACAAGATATACAAGATTTTGTATTGGAAATCATGGAATCCACAAGTCTCGTTCGAGATGCATCTTACGCTAACAAAGTACGAACTAGTTTAGTATTGAGTCGTGAGGAAGTTCAAAAAATGAAGAGATGGGTCACTGATAAATGTAAAGACTCAACACCACACATGTCAACTTTTGTTGTAACATGTTCCTTGATTTGGTTTTGTATGGTAAAATCAGAGCAAAGAAAAAGTGATCTAGTGTACTTCATGTTTTTTGCAGATTGTCGTGATCGTCCTGAATTTTCATTACCGAAAACTTATTTTGGAAATTGTCTTGCATCTTATATTGTGGCTGTAAAGAGAGATGAGTTAATTGGAAAAGACGGTATTGTTGTGGCAGCAAATGCTATTGAAAGGAAGATAAGAGATTTTAAGAGTGATGCTTTGTTGGGAGTTGAAACGTTGATGCCTGATTATAGGGAAATAATAAAACCAGGTAACTCTGTTAAAATGGTTTCTGGGTCACCTAAACTTGATGTTTATGAGACTGATTTTGGGTGGGGAAAACCAAAGAAATCTGATGTAGTGCATATTGATTCGTGCAGTTCGATTTCTCTTTCTGATTGTAGAGATGGTGGAGGTGGAATTGAAGTTGGTTTGGCTCTTGAGAGGTCTCAAATGACTGATTTCATCAATATCTATAAAGGACAACTTGGTGATATTTGTAGCATGTGA
Protein sequence

>MS.gene35744.t1

MPQHHEIKFYHNETVTVKVIEQSQVSPPPNSLPSPTILPLTFFDISWFYCKPPLKRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHYFPFTSNLIIPPNSHNTPPYIRYLDEDSISFTIAESSADFNILISDSQEALNWHHLVPNLPSPHTEQNGTCIVPLMAIQITILPNSGFSVCLAFKHVVADGKSLHHFMKFWAFASKAIANNNDLSHSPPLDLPSHERDRLLKHPMDPKLTYLQDIQDFVLEIMESTSLVRDASYANKVRTSLVLSREEVQKMKRWVTDKCKDSTPHMSTFVVTCSLIWFCMVKSEQRKSDLVYFMFFADCRDRPEFSLPKTYFGNCLASYIVAVKRDELIGKDGIVVAANAIERKIRDFKSDALLGVETLMPDYREIIKPGNSVKMVSGSPKLDVYETDFGWGKPKKSDVVHIDSCSSISLSDCRDGGGGIEVGLALERSQMTDFINIYKGQLGDICSM