AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37212


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37212.t1 MTR_6g016870 94.468 235 13 0 1 235 97 331 8.68e-161 451
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37212.t1 AT5G15880 51.351 259 116 5 1 257 96 346 1.91e-71 223

Find 0 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTCTAATAAATAGTTA+TGG + 42363:30680-30699 MS.gene37212:intron 10.0%
!! TATTTATTTATACCAAAAAA+AGG + 42363:31084-31103 MS.gene37212:intron 10.0%
!! TGTTAAAATATTATACTTAA+TGG + 42363:28502-28521 MS.gene37212:intron 10.0%
!! AAATGAATTATTCTATCAAA+AGG + 42363:29464-29483 MS.gene37212:intron 15.0%
!! ATAGTTATACATTCATATAA+TGG + 42363:27975-27994 MS.gene37212:intron 15.0%
!! ATATTATACTTAATGGTTAA+TGG + 42363:28509-28528 MS.gene37212:intron 15.0%
!! CATTTAGCAATTATTAATTA+TGG - 42363:27310-27329 None:intergenic 15.0%
!! GAATATATAACTATATTTCA+TGG + 42363:31123-31142 MS.gene37212:intron 15.0%
!! TAAACATAATTGTATTTATC+AGG + 42363:30181-30200 MS.gene37212:intron 15.0%
!! TTTATGATTTCTATTTATCT+AGG - 42363:30596-30615 None:intergenic 15.0%
!!! AACTAAATTGATAATTCAAT+AGG + 42363:28223-28242 MS.gene37212:intron 15.0%
!!! TCAAGTATCAATAATATTTT+AGG - 42363:30523-30542 None:intergenic 15.0%
!! AAATAGATAGAGAAAATAGA+GGG + 42363:27606-27625 MS.gene37212:intron 20.0%
!! AACAAAATAAAGAAAAACAG+AGG + 42363:27688-27707 MS.gene37212:intron 20.0%
!! AGCAATTATTAATTATGGAT+TGG - 42363:27305-27324 None:intergenic 20.0%
!! ATAAGTAAGATATAATACCT+GGG - 42363:28833-28852 None:intergenic 20.0%
!! ATTGGAGAACTTATTAAAAT+TGG + 42363:27130-27149 MS.gene37212:intron 20.0%
!! ATTTATACCAAAAAAAGGAA+AGG + 42363:31089-31108 MS.gene37212:intron 20.0%
!! CAATAAAAACGATAAGATTA+CGG - 42363:29538-29557 None:intergenic 20.0%
!! GAATAAAATCAAGGAAAAAA+TGG + 42363:26370-26389 MS.gene37212:CDS 20.0%
!! TATATATAACAAGAAGTTTC+TGG + 42363:30322-30341 MS.gene37212:intron 20.0%
!! TGAATTATCAATTTAGTTGA+AGG - 42363:28221-28240 None:intergenic 20.0%
!! TTAAATTATTGTTTCAGTTC+TGG - 42363:28684-28703 None:intergenic 20.0%
!! TTATGTTTATATATGTGTGT+CGG + 42363:28854-28873 MS.gene37212:intron 20.0%
!! TTCATTCAAAACTATAGTTA+TGG + 42363:28152-28171 MS.gene37212:intron 20.0%
!!! ATACATTCATATAATGGAAA+GGG + 42363:27981-28000 MS.gene37212:intron 20.0%
!!! ATTTTATTTTCAGAGTTCAA+TGG + 42363:28740-28759 MS.gene37212:intron 20.0%
!!! GCATTTAATTTGCATTTAAA+AGG - 42363:28472-28491 None:intergenic 20.0%
!!! GTTGTTTTTATAAGCTATAT+TGG + 42363:27112-27131 MS.gene37212:intron 20.0%
!!! TATACATTCATATAATGGAA+AGG + 42363:27980-27999 MS.gene37212:intron 20.0%
!!! TGTTCATTTCTTTTAAGAAA+TGG - 42363:28054-28073 None:intergenic 20.0%
!!! TTGCAAGATTTTATGATAAA+AGG + 42363:30479-30498 MS.gene37212:intron 20.0%
!!! TTTTTCTTTATTTTGTTGCA+TGG - 42363:27685-27704 None:intergenic 20.0%
!!! TTTTTTTCCTTTCCTTTTTT+TGG - 42363:31099-31118 None:intergenic 20.0%
! AAAACTATACCAAGTTCAAA+TGG - 42363:29128-29147 None:intergenic 25.0%
! AAAGCAACCAAATACAAAAA+AGG - 42363:28957-28976 None:intergenic 25.0%
! AACAACTATGCTAGAAAAAT+TGG + 42363:26764-26783 MS.gene37212:CDS 25.0%
! AACAAGATAAATAATAGAGC+TGG + 42363:26714-26733 MS.gene37212:CDS 25.0%
! AACTTATTTCAATAAGCTAG+AGG - 42363:27272-27291 None:intergenic 25.0%
! AATAAAAGAAAGAATCCAGT+TGG + 42363:29487-29506 MS.gene37212:intron 25.0%
! AATAAGCTATTTATCCAAAC+AGG - 42363:26985-27004 None:intergenic 25.0%
! ACATTAGATAAACAACTTCA+TGG + 42363:29659-29678 MS.gene37212:CDS 25.0%
! ACGACTATTTGATTGATTAT+CGG + 42363:29821-29840 MS.gene37212:intron 25.0%
! AGAAAAAACAGAGAAAATAG+AGG + 42363:28324-28343 MS.gene37212:intron 25.0%
! ATAAAAGAAAGAATCCAGTT+GGG + 42363:29488-29507 MS.gene37212:intron 25.0%
! ATATTCATAATTTGACAGCA+AGG + 42363:31028-31047 MS.gene37212:intron 25.0%
! ATCAATTTAGTTGAAGGAAA+TGG - 42363:28215-28234 None:intergenic 25.0%
! CAAAAAAAACAGAGGAAAAA+TGG + 42363:27728-27747 MS.gene37212:intron 25.0%
! CATAAGTAAGATATAATACC+TGG - 42363:28834-28853 None:intergenic 25.0%
! GAAACATAAACAATGAAGTA+TGG - 42363:29720-29739 None:intergenic 25.0%
! GAAATAGATAGAGAAAATAG+AGG + 42363:27605-27624 MS.gene37212:intron 25.0%
! GTCATAATCAACTAAGAAAA+AGG - 42363:30257-30276 None:intergenic 25.0%
! TAAAAGGAAGAGAAAATAAC+AGG + 42363:30495-30514 MS.gene37212:intron 25.0%
! TAAAATCAAGGAAAAAATGG+AGG + 42363:26373-26392 MS.gene37212:CDS 25.0%
! TAAGTAAGATATAATACCTG+GGG - 42363:28832-28851 None:intergenic 25.0%
! TAATTGCTAAATGATTGAAG+TGG + 42363:27317-27336 MS.gene37212:intron 25.0%
! TAGATGTATTTAGAGACATT+GGG + 42363:27450-27469 MS.gene37212:intron 25.0%
! TCAATTTAGTTGAAGGAAAT+GGG - 42363:28214-28233 None:intergenic 25.0%
! TTAGATGTATTTAGAGACAT+TGG + 42363:27449-27468 MS.gene37212:intron 25.0%
! TTATGTGATTTCTTGTATGT+TGG + 42363:29195-29214 MS.gene37212:intron 25.0%
! TTTAGTGATATGTTACCAAA+TGG + 42363:29274-29293 MS.gene37212:intron 25.0%
! TTTATGTGTCCCTATAAATA+GGG - 42363:30567-30586 None:intergenic 25.0%
!! AGAAATCATAAACTGATTCT+AGG + 42363:30604-30623 MS.gene37212:intron 25.0%
!! CTAGGATGTATTTTCTTTTT+TGG + 42363:29405-29424 MS.gene37212:intron 25.0%
!! TACATTCATATAATGGAAAG+GGG + 42363:27982-28001 MS.gene37212:intron 25.0%
!! TCAAGAACTTGTTTATAGTA+GGG + 42363:29063-29082 MS.gene37212:intron 25.0%
!! TCATTTAGAAAAGTACAAAC+AGG - 42363:29450-29469 None:intergenic 25.0%
!! TTTTCTTAGTTGATTATGAC+TGG + 42363:30257-30276 MS.gene37212:intron 25.0%
!!! AAAAGCATTAGAGAAGAAAT+GGG + 42363:28773-28792 MS.gene37212:CDS 25.0%
!!! AAGTGCTTTTTCATATACTA+TGG + 42363:26958-26977 MS.gene37212:intron 25.0%
!!! ACTTGGTATAGTTTTGTTTA+TGG + 42363:29133-29152 MS.gene37212:intron 25.0%
!!! AGTGCTTTTTCATATACTAT+GGG + 42363:26959-26978 MS.gene37212:intron 25.0%
!!! CTTGGTATAGTTTTGTTTAT+GGG + 42363:29134-29153 MS.gene37212:intron 25.0%
!!! TAAAAGCATTAGAGAAGAAA+TGG + 42363:28772-28791 MS.gene37212:CDS 25.0%
!!! TTAATGGACTTTTAAAGTGA+TGG + 42363:28525-28544 MS.gene37212:intron 25.0%
!!! TTACTTTTGAGTTTGTTGTT+GGG + 42363:30713-30732 MS.gene37212:intron 25.0%
!!! TTTTCTTTGACTATTTGTTG+CGG + 42363:28575-28594 MS.gene37212:intron 25.0%
!!! TTTTGTTTTGGAGTATTTCT+AGG + 42363:29352-29371 MS.gene37212:intron 25.0%
!!! TTTTTGTATTTGGTTGCTTT+AGG + 42363:28957-28976 MS.gene37212:intron 25.0%
AAAAACGGCAAAAAAAACAG+AGG + 42363:27720-27739 MS.gene37212:intron 30.0%
AAAATGAACCTGAGTAAAGT+CGG + 42363:28412-28431 MS.gene37212:intron 30.0%
AAACACTAGACCCTATTTAT+AGG + 42363:30554-30573 MS.gene37212:intron 30.0%
AAATACAAAAAAGGCAAGGA+AGG - 42363:28948-28967 None:intergenic 30.0%
AACACTAGACCCTATTTATA+GGG + 42363:30555-30574 MS.gene37212:intron 30.0%
AACCAAATACAAAAAAGGCA+AGG - 42363:28952-28971 None:intergenic 30.0%
AAGATTAGACGTTATGATAG+CGG + 42363:30450-30469 MS.gene37212:intron 30.0%
ACATGCAGAATAAAACCATT+TGG - 42363:29292-29311 None:intergenic 30.0%
AGAAAATAGAGGAAAAACAG+AGG + 42363:28335-28354 MS.gene37212:intron 30.0%
AGACTAATTCGATACATTCA+AGG + 42363:27412-27431 MS.gene37212:intron 30.0%
AGCAAGGTTTGATGTTAATA+GGG + 42363:31044-31063 MS.gene37212:intron 30.0%
ATGAAATTGAAAAGAAGCTG+AGG + 42363:26613-26632 MS.gene37212:CDS 30.0%
CAATTGCGAGAATAAAATCA+AGG + 42363:26361-26380 MS.gene37212:CDS 30.0%
CATAAAAACAGAGGTAATAG+AGG + 42363:27646-27665 MS.gene37212:intron 30.0%
CGACTATTTGATTGATTATC+GGG + 42363:29822-29841 MS.gene37212:intron 30.0%
GAATTGATGAAAACAGCTTA+TGG - 42363:27179-27198 None:intergenic 30.0%
GGATCAAAAGAAACAAACAA+AGG - 42363:28927-28946 None:intergenic 30.0%
GTGAAAATCACTTAACAGAA+AGG - 42363:30792-30811 None:intergenic 30.0%
GTTTATGTGTCCCTATAAAT+AGG - 42363:30568-30587 None:intergenic 30.0%
TAAAAGAAAGAATCCAGTTG+GGG + 42363:29489-29508 MS.gene37212:intron 30.0%
TCAAATAAGCCAATCTAAAC+AGG + 42363:27238-27257 MS.gene37212:intron 30.0%
TCAATAAGCTAGAGGAAATA+GGG - 42363:27264-27283 None:intergenic 30.0%
TCTGTACTTAATGTGTACAT+CGG + 42363:28990-29009 MS.gene37212:intron 30.0%
TCTTCTGTCAAGTATCAATT+CGG + 42363:27364-27383 MS.gene37212:intron 30.0%
TGAAATTGAAAAGAAGCTGA+GGG + 42363:26614-26633 MS.gene37212:CDS 30.0%
TTATTAGACTCATCTTCAGA+AGG - 42363:29872-29891 None:intergenic 30.0%
TTATTCAGTCAGCTATTCTA+GGG + 42363:26926-26945 MS.gene37212:intron 30.0%
TTCAATAAGCTAGAGGAAAT+AGG - 42363:27265-27284 None:intergenic 30.0%
TTGTGTTTATGTTCTTTCAC+CGG - 42363:27532-27551 None:intergenic 30.0%
! AACAGATGTAACATGAGTTT+TGG - 42363:30365-30384 None:intergenic 30.0%
! ATTATTGTTTCAGTTCTGGT+AGG - 42363:28680-28699 None:intergenic 30.0%
! CTTGATTTTATTCTCGCAAT+TGG - 42363:26363-26382 None:intergenic 30.0%
! GTCAAGAACTTGTTTATAGT+AGG + 42363:29062-29081 MS.gene37212:intron 30.0%
! TCAAGAAATTTGCAAGTTGA+AGG - 42363:30853-30872 None:intergenic 30.0%
! TTATTTTCAGAGTTCAATGG+AGG + 42363:28743-28762 MS.gene37212:intron 30.0%
!!! ATTACCTCTGTTTTTATGCT+TGG - 42363:27644-27663 None:intergenic 30.0%
!!! CGCTATTTTTCAAAAGAAAC+AGG - 42363:28181-28200 None:intergenic 30.0%
!!! GTGGTTTGCTATGTATTTTT+GGG + 42363:26518-26537 MS.gene37212:intron 30.0%
!!! GTTACTTTTGAGTTTGTTGT+TGG + 42363:30712-30731 MS.gene37212:intron 30.0%
!!! GTTGTTGATTCGTATGTTTT+GGG + 42363:26577-26596 MS.gene37212:intron 30.0%
!!! TGTTGTTGATTCGTATGTTT+TGG + 42363:26576-26595 MS.gene37212:intron 30.0%
!!! TTCCTTGCCTTTTTTGTATT+TGG + 42363:28947-28966 MS.gene37212:intron 30.0%
!!! TTGTTGATTCGTATGTTTTG+GGG + 42363:26578-26597 MS.gene37212:intron 30.0%
AAAAGAAAGAATCCAGTTGG+GGG + 42363:29490-29509 MS.gene37212:intron 35.0%
AAACGATAAGATTACGGAGA+TGG - 42363:29532-29551 None:intergenic 35.0%
AACCCTCAGATATCAAAGAT+TGG - 42363:26683-26702 None:intergenic 35.0%
AAGAAAAACAGAGGAAACAG+AGG + 42363:27697-27716 MS.gene37212:intron 35.0%
AATCAAGGAAAAAATGGAGG+AGG + 42363:26376-26395 MS.gene37212:CDS 35.0%
AATCTTTGATATCTGAGGGT+TGG + 42363:26682-26701 MS.gene37212:CDS 35.0%
AATTTCTTCAAGTAAGCCCT+CGG - 42363:29926-29945 None:intergenic 35.0%
ACAAGCACACAAAAAAACAG+AGG + 42363:28360-28379 MS.gene37212:intron 35.0%
ACCATGGAAGTCTAATCTAT+AGG + 42363:30810-30829 MS.gene37212:intron 35.0%
AGAAAATAGAGGGAAAACAG+AGG + 42363:27616-27635 MS.gene37212:intron 35.0%
AGCCAATCTTTGATATCTGA+GGG + 42363:26678-26697 MS.gene37212:CDS 35.0%
AGGTAATAGAGGAAAAACAG+AGG + 42363:27657-27676 MS.gene37212:intron 35.0%
AGTTCAGAAAGATTTACCGT+TGG - 42363:27897-27916 None:intergenic 35.0%
ATAAGATTACGGAGATGGAA+CGG - 42363:29527-29546 None:intergenic 35.0%
ATACATAGCAAACCACCAAA+TGG - 42363:26514-26533 None:intergenic 35.0%
ATCAAGATCCTAAGTAGGAT+TGG + 42363:28261-28280 MS.gene37212:intron 35.0%
ATCTTTGATATCTGAGGGTT+GGG + 42363:26683-26702 MS.gene37212:CDS 35.0%
CAATAAGTAAATGCTCTCTC+AGG - 42363:30906-30925 None:intergenic 35.0%
CAGCAAGGTTTGATGTTAAT+AGG + 42363:31043-31062 MS.gene37212:intron 35.0%
CAGTGCATGCATCATAAAAT+TGG - 42363:28122-28141 None:intergenic 35.0%
CTTATCTAGTGGCATAAGTT+TGG - 42363:27217-27236 None:intergenic 35.0%
CTTATTCAGTCAGCTATTCT+AGG + 42363:26925-26944 MS.gene37212:intron 35.0%
GCAAGGTTTGATGTTAATAG+GGG + 42363:31045-31064 MS.gene37212:intron 35.0%
GCTGCAAAACAAGTTAAGAA+AGG - 42363:29626-29645 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAG+TGG - 42363:27228-27247 None:intergenic 35.0%
GGAAAAATGGCAAAAAACAG+AGG + 42363:27741-27760 MS.gene37212:intron 35.0%
GGTGAAAGAACATAAACACA+AGG + 42363:27531-27550 MS.gene37212:intron 35.0%
TAAACACAAGGAACGTAACA+CGG + 42363:27543-27562 MS.gene37212:intron 35.0%
TAAGATATAATACCTGGGGA+AGG - 42363:28828-28847 None:intergenic 35.0%
TCAAGTCAGTATCATTATCC+AGG + 42363:31219-31238 MS.gene37212:CDS 35.0%
TCATGATCAAGATCCTAAGT+AGG + 42363:28256-28275 MS.gene37212:intron 35.0%
TCCTATAGATTAGACTTCCA+TGG - 42363:30814-30833 None:intergenic 35.0%
TGATTGATTGCAATGTAGTC+AGG + 42363:27480-27499 MS.gene37212:intron 35.0%
TGGAAAGATTGAATGCACAA+TGG + 42363:29965-29984 MS.gene37212:CDS 35.0%
TTAGAGATTAATGCGACCAA+CGG + 42363:27878-27897 MS.gene37212:intron 35.0%
TTAGTTGAAGGAAATGGGTA+AGG - 42363:28209-28228 None:intergenic 35.0%
! AAATGATTGAAGTGGTGTTG+TGG + 42363:27325-27344 MS.gene37212:intron 35.0%
! AATTAGTCTCCAATTTCTCG+AGG - 42363:27401-27420 None:intergenic 35.0%
! ATTAGTCTCCAATTTCTCGA+GGG - 42363:27400-27419 None:intergenic 35.0%
! ATTCATATAATGGAAAGGGG+AGG + 42363:27985-28004 MS.gene37212:intron 35.0%
! CTAAAGAACTTGATAGCAGT+TGG + 42363:27932-27951 MS.gene37212:intron 35.0%
! CTGTTAAGTGATTTTCACCA+TGG + 42363:30794-30813 MS.gene37212:intron 35.0%
! TCCTCTCGTTAACTTTTCTT+CGG - 42363:30412-30431 None:intergenic 35.0%
! TGATAAGGTACATGGTTTGT+CGG + 42363:30053-30072 MS.gene37212:CDS 35.0%
! TGCAAAATGCCATTTGAACT+TGG + 42363:29116-29135 MS.gene37212:intron 35.0%
! TTGTATTTGGTTGCTTTAGG+TGG + 42363:28960-28979 MS.gene37212:intron 35.0%
!! GCTAGAAATCGTTTTGTTAG+AGG + 42363:30024-30043 MS.gene37212:CDS 35.0%
!!! ACTCTTGTTGGGTTTTGTTT+TGG + 42363:29340-29359 MS.gene37212:intron 35.0%
!!! GGTGGTTTGCTATGTATTTT+TGG + 42363:26517-26536 MS.gene37212:intron 35.0%
!!! GTTTTGGAGTATTTCTAGGT+TGG + 42363:29356-29375 MS.gene37212:intron 35.0%
AAATGCTCTCTCAGGTAACT+AGG - 42363:30898-30917 None:intergenic 40.0%
AGTAAGCAATTTCATGTGCC+TGG - 42363:31240-31259 None:intergenic 40.0%
ATGCAGACAGAAACTCTTGT+TGG + 42363:29328-29347 MS.gene37212:intron 40.0%
ATTACTACGGACCAAGTTAG+AGG + 42363:26403-26422 MS.gene37212:CDS 40.0%
CAAACCATGTACCTTATCAG+AGG - 42363:30052-30071 None:intergenic 40.0%
CAGAGGAAACAGAGGAAAAA+CGG + 42363:27705-27724 MS.gene37212:intron 40.0%
CAGCCAATCTTTGATATCTG+AGG + 42363:26677-26696 MS.gene37212:CDS 40.0%
CAGTGTGATCGATCAATCAA+AGG - 42363:29033-29052 None:intergenic 40.0%
CTCAGATATCAAAGATTGGC+TGG - 42363:26679-26698 None:intergenic 40.0%
CTTAATGTGTACATCGGTCA+TGG + 42363:28996-29015 MS.gene37212:intron 40.0%
CTTTCTATCGCCACACAAAA+TGG + 42363:29782-29801 MS.gene37212:intron 40.0%
GAAATAGGGCCTGTTTAGAT+TGG - 42363:27250-27269 None:intergenic 40.0%
GACATGCTATATTTCGTTCG+AGG + 42363:28017-28036 MS.gene37212:intron 40.0%
GTAGCTATCTGTCCATTCTT+GGG - 42363:31178-31197 None:intergenic 40.0%
GTGACGCTTGCATTAATTGT+TGG + 42363:28634-28653 MS.gene37212:intron 40.0%
TAGCTATCTGTCCATTCTTG+GGG - 42363:31177-31196 None:intergenic 40.0%
TCAGCAACTAGCAGTTAAAC+AGG + 42363:29688-29707 MS.gene37212:CDS 40.0%
TCAGGTAACTAGGAATAGGA+AGG - 42363:30888-30907 None:intergenic 40.0%
TCATATACTATGGGCCTGTT+TGG + 42363:26968-26987 MS.gene37212:intron 40.0%
TCTCTCAGGTAACTAGGAAT+AGG - 42363:30892-30911 None:intergenic 40.0%
TGAAGAAATTCACCCGAAAG+AGG + 42363:29936-29955 MS.gene37212:CDS 40.0%
TGCAGACAGAAACTCTTGTT+GGG + 42363:29329-29348 MS.gene37212:intron 40.0%
TGTAGCTATCTGTCCATTCT+TGG - 42363:31179-31198 None:intergenic 40.0%
! AGATCCTAAGTAGGATTGGT+CGG + 42363:28265-28284 MS.gene37212:intron 40.0%
! AGATTAGTCCCTCGAGAAAT+TGG + 42363:27389-27408 MS.gene37212:intron 40.0%
! CAAAGCAATGCATTGACGTA+TGG - 42363:31264-31283 None:intergenic 40.0%
! CATGGTTTGTCGGATTATGA+TGG + 42363:30063-30082 MS.gene37212:CDS 40.0%
! TAAGTTTGGTGAGACTGTTC+AGG - 42363:27203-27222 None:intergenic 40.0%
! TTCTAGGTTGGACATGTAGA+GGG + 42363:29368-29387 MS.gene37212:intron 40.0%
! TTTCTAGGTTGGACATGTAG+AGG + 42363:29367-29386 MS.gene37212:intron 40.0%
!! AAAGTACAAACAGGAGCATC+AGG - 42363:29441-29460 None:intergenic 40.0%
!! AAGTACAAACAGGAGCATCA+GGG - 42363:29440-29459 None:intergenic 40.0%
!! TGATACTGACTTGAGCTTTG+AGG - 42363:31213-31232 None:intergenic 40.0%
!! TTTGTTGTTGGGAGAGATGA+TGG + 42363:30724-30743 MS.gene37212:intron 40.0%
!!! ATTCGTATGTTTTGGGGTAC+AGG + 42363:26584-26603 MS.gene37212:intron 40.0%
ACACGGTTCGTAAGTAGGAT+TGG + 42363:27560-27579 MS.gene37212:intron 45.0%
ACGTAACACGGTTCGTAAGT+AGG + 42363:27555-27574 MS.gene37212:intron 45.0%
AGAAATTCACCCGAAAGAGG+TGG + 42363:29939-29958 MS.gene37212:CDS 45.0%
ATCGTGCTTCGACTTTACTC+TGG - 42363:27785-27804 None:intergenic 45.0%
ATGTATGACAGCCCCAAGAA+TGG + 42363:31163-31182 MS.gene37212:intron 45.0%
CGATCAATCAAAGGTTCCAG+AGG - 42363:29024-29043 None:intergenic 45.0%
CGGATTATGATGGTCATCAG+AGG + 42363:30073-30092 MS.gene37212:CDS 45.0%
GATCGAGATCCTACTAGGAT+CGG + 42363:27502-27521 MS.gene37212:intron 45.0%
GCCGAAGAAAAGTTAACGAG+AGG + 42363:30408-30427 MS.gene37212:intron 45.0%
GCTTCGACTTTACTCTGGTT+CGG - 42363:27780-27799 None:intergenic 45.0%
GGAGCCAAGCATAAAAACAG+AGG + 42363:27637-27656 MS.gene37212:intron 45.0%
GGATGAGAAGAAGAAAGAGC+TGG + 42363:26785-26804 MS.gene37212:CDS 45.0%
TAAGTAGCATAAGCCTCTGC+TGG - 42363:30131-30150 None:intergenic 45.0%
TATACACACACACACACACG+AGG - 42363:30306-30325 None:intergenic 45.0%
TGGAGGAGGCTGAATTACTA+CGG + 42363:26390-26409 MS.gene37212:CDS 45.0%
TGTTAGAGGCTCCTCTGATA+AGG + 42363:30038-30057 MS.gene37212:CDS 45.0%
TTTCAGTTCTGCCTGCAGAA+TGG - 42363:30107-30126 None:intergenic 45.0%
TTTGATATCTGAGGGTTGGG+AGG + 42363:26686-26705 MS.gene37212:CDS 45.0%
! AGCAGAGGCTTATGCTACTT+AGG + 42363:30130-30149 MS.gene37212:CDS 45.0%
! ATGTGTGTCGGTGTATGTGA+AGG + 42363:28866-28885 MS.gene37212:intron 45.0%
! GAGGCTTATGCTACTTAGGT+CGG + 42363:30134-30153 MS.gene37212:intron 45.0%
! GGTTCGTAAGTAGGATTGGT+AGG + 42363:27564-27583 MS.gene37212:intron 45.0%
! GTGTGTGTATGTGTGCCATT+TGG + 42363:26496-26515 MS.gene37212:intron 45.0%
!! AGTACAAACAGGAGCATCAG+GGG - 42363:29439-29458 None:intergenic 45.0%
!! TCAACCATCGCCATTTTGTG+TGG - 42363:29795-29814 None:intergenic 45.0%
!! TGAGCTTTGAGGCTAAGCAT+AGG - 42363:31202-31221 None:intergenic 45.0%
!! TGTGTATGTGTGCCATTTGG+TGG + 42363:26499-26518 MS.gene37212:intron 45.0%
!! TTGCGGCTTTGCATTTTGAC+TGG + 42363:28592-28611 MS.gene37212:intron 45.0%
!!! ATGTTTTGGGGTACAGGAGA+TGG + 42363:26590-26609 MS.gene37212:intron 45.0%
!!! TAATAAGATAATTTTAATTT+TGG - 42363:30219-30238 None:intergenic 5.0%
AAGATCGAGTCCCAGGTCAT+AGG - 42363:27839-27858 None:intergenic 50.0%
ACAACCTACCGATCCTTCAC+CGG - 42363:28291-28310 None:intergenic 50.0%
ACCTGAGTAAAGTCGGAGCA+CGG + 42363:28419-28438 MS.gene37212:intron 50.0%
AGAAAGAATCCAGTTGGGGG+TGG + 42363:29493-29512 MS.gene37212:intron 50.0%
AGGCTTCCATACCATTCTGC+AGG + 42363:30093-30112 MS.gene37212:CDS 50.0%
ATCGCCACACAAAATGGCGA+TGG + 42363:29788-29807 MS.gene37212:intron 50.0%
ATCGTGCGATCCTATGACCT+GGG + 42363:27826-27845 MS.gene37212:intron 50.0%
CAGCGTCTCTTCTCTAAGCT+GGG - 42363:26306-26325 None:intergenic 50.0%
CCAAGTTAGAGGTGAGACTG+AGG + 42363:26414-26433 MS.gene37212:intron 50.0%
CCTCAGTCTCACCTCTAACT+TGG - 42363:26417-26436 None:intergenic 50.0%
CTTTCCAGCTCCACCTCTTT+CGG - 42363:29952-29971 None:intergenic 50.0%
GAGATCCTACTAGGATCGGT+CGG + 42363:27506-27525 MS.gene37212:intron 50.0%
GCTTAGAGAAGAGACGCTGA+AGG + 42363:26307-26326 MS.gene37212:CDS 50.0%
GGCTCCTCTGATAAGGTACA+TGG + 42363:30045-30064 MS.gene37212:CDS 50.0%
GTAAAGTCGAAGCACGATCG+AGG + 42363:27787-27806 MS.gene37212:intron 50.0%
GTCAGGATCGAGATCCTACT+AGG + 42363:27497-27516 MS.gene37212:intron 50.0%
GTTCTGCCTGCAGAATGGTA+TGG - 42363:30102-30121 None:intergenic 50.0%
GTTGGACATGTAGAGGGACT+AGG + 42363:29374-29393 MS.gene37212:intron 50.0%
TACATCGGTCATGGATCCTC+TGG + 42363:29005-29024 MS.gene37212:intron 50.0%
TATGACCTGGGACTCGATCT+TGG + 42363:27838-27857 MS.gene37212:intron 50.0%
TCAGCGTCTCTTCTCTAAGC+TGG - 42363:26307-26326 None:intergenic 50.0%
TGCTTTCAGACACAAGCCGA+GGG + 42363:29907-29926 MS.gene37212:intron 50.0%
TTGCTTTCAGACACAAGCCG+AGG + 42363:29906-29925 MS.gene37212:intron 50.0%
TTTCCAGCTCCACCTCTTTC+GGG - 42363:29951-29970 None:intergenic 50.0%
!! GTACAAACAGGAGCATCAGG+GGG - 42363:29438-29457 None:intergenic 50.0%
!!! AGGGACTAGGCTGCTTTTCT+AGG + 42363:29387-29406 MS.gene37212:intron 50.0%
AAAGAAGCTGAGGGCTGAGC+TGG + 42363:26623-26642 MS.gene37212:CDS 55.0%
ACCGTGCTCCGACTTTACTC+AGG - 42363:28423-28442 None:intergenic 55.0%
GAATCAAAGCCACCCCCAAC+TGG - 42363:29505-29524 None:intergenic 55.0%
GATCGTGCGATCCTATGACC+TGG + 42363:27825-27844 MS.gene37212:intron 55.0%
GCACTTAAACAGCCTTCCCC+AGG + 42363:28813-28832 MS.gene37212:CDS 55.0%
GCAGAACTGAAAGCCAGCAG+AGG + 42363:30115-30134 MS.gene37212:CDS 55.0%
GTAAAGTCGGAGCACGGTTG+AGG + 42363:28425-28444 MS.gene37212:intron 55.0%
TGTAGCCAAGATCGAGTCCC+AGG - 42363:27846-27865 None:intergenic 55.0%
!! CCTAAGTAGGATTGGTCGGC+CGG + 42363:28269-28288 MS.gene37212:intron 55.0%
!! GAAGAAATGGGCTGCAGTGC+AGG + 42363:28785-28804 MS.gene37212:CDS 55.0%
CCGGCCGACCAATCCTACTT+AGG - 42363:28272-28291 None:intergenic 60.0%
GAGCACGGTTGAGGTGACGT+GGG + 42363:28434-28453 MS.gene37212:intron 60.0%
TCACCCGAAAGAGGTGGAGC+TGG + 42363:29945-29964 MS.gene37212:CDS 60.0%
TCCTACTAGGATCGGTCGGC+CGG + 42363:27510-27529 MS.gene37212:intron 60.0%
TTGGTCGGCCGGTGAAGGAT+CGG + 42363:28280-28299 MS.gene37212:intron 60.0%
!! GAAGCACGATCGAGGTGCTG+TGG + 42363:27795-27814 MS.gene37212:intron 60.0%
!! TAGGATTGGTCGGCCGGTGA+AGG + 42363:28275-28294 MS.gene37212:intron 60.0%
ACCGGCCGACCGATCCTAGT+AGG - 42363:27514-27533 None:intergenic 65.0%
GGAGCACGGTTGAGGTGACG+TGG + 42363:28433-28452 MS.gene37212:intron 65.0%
TCGGCCGGTGAAGGATCGGT+AGG + 42363:28284-28303 MS.gene37212:intron 65.0%


Chromosome Type Strat End Strand Name
42363 gene 26302 31291 26302 ID=MS.gene37212
42363 mRNA 26302 31291 26302 ID=MS.gene37212.t1;Parent=MS.gene37212
42363 exon 26302 26424 26302 ID=MS.gene37212.t1.exon1;Parent=MS.gene37212.t1
42363 CDS 26302 26424 26302 ID=cds.MS.gene37212.t1;Parent=MS.gene37212.t1
42363 exon 26606 26806 26606 ID=MS.gene37212.t1.exon2;Parent=MS.gene37212.t1
42363 CDS 26606 26806 26606 ID=cds.MS.gene37212.t1;Parent=MS.gene37212.t1
42363 exon 28753 28834 28753 ID=MS.gene37212.t1.exon3;Parent=MS.gene37212.t1
42363 CDS 28753 28834 28753 ID=cds.MS.gene37212.t1;Parent=MS.gene37212.t1
42363 exon 29645 29709 29645 ID=MS.gene37212.t1.exon4;Parent=MS.gene37212.t1
42363 CDS 29645 29709 29645 ID=cds.MS.gene37212.t1;Parent=MS.gene37212.t1
42363 exon 29916 30151 29916 ID=MS.gene37212.t1.exon5;Parent=MS.gene37212.t1
42363 CDS 29916 30151 29916 ID=cds.MS.gene37212.t1;Parent=MS.gene37212.t1
42363 exon 31174 31291 31174 ID=MS.gene37212.t1.exon6;Parent=MS.gene37212.t1
42363 CDS 31174 31291 31174 ID=cds.MS.gene37212.t1;Parent=MS.gene37212.t1
Gene Sequence

>MS.gene37212

GCCCAGCTTAGAGAAGAGACGCTGAAGGAAGAAAATGCTGCTTTCGAGAATGCTATATCCAATTGCGAGAATAAAATCAAGGAAAAAATGGAGGAGGCTGAATTACTACGGACCAAGTTAGAGGTGAGACTGAGGATTGTGATATGTATGTTGTATCTTGTACTGAATCAAAGTAGTTGTATGATGCTGTTAATGTGTGTGTATGTGTGCCATTTGGTGGTTTGCTATGTATTTTTGGGAATTGAAGTTCACTGCACGATGTTTTAATTATCGTTGTTGTTGATTCGTATGTTTTGGGGTACAGGAGATGGATGAAATTGAAAAGAAGCTGAGGGCTGAGCTGGAAAATATGCAGTCGAGATCTTCTGTCAATGCCAGCCAATCTTTGATATCTGAGGGTTGGGAGGAAGAAAACAAGATAAATAATAGAGCTGGCTTTGATGCAGATGCAGAAGCGTTAAAAACAACTATGCTAGAAAAATTGGATGAGAAGAAGAAAGAGCTGGTTTGTTCTTGTTTCTTTAATCACACGATTCTCTTTTGTCTTCTTAAAAATAACATATTGCTCAATACTGAACGAGTAAGAGTGCGTTTGAACTTTGAATATATAACTTGATTAAGCACTTATTCAGTCAGCTATTCTAGGGAGTTTATTTAAGTGCTTTTTCATATACTATGGGCCTGTTTGGATAAATAGCTTATTTGCAGCTATATCACAAGCACTTTTCATGATAAGCGCTTATGTGTAAGCTTGCATAAGTTAGTTTTATAGCAAAAGATAACGTTAAATTGTTTACGTATATGCTATAAGTTGTTTTTATAAGCTATATTGGAGAACTTATTAAAATTGGTTAAAAAAAGTTTATGAAAATCACCATAAGCTGTTTTCATCAATTCTCCTGAACAGTCTCACCAAACTTATGCCACTAGATAAGCTCAAATAAGCCAATCTAAACAGGCCCTATTTCCTCTAGCTTATTGAAATAAGTTTATCTTAAAACCAATCCATAATTAATAATTGCTAAATGATTGAAGTGGTGTTGTGGTTCGTGAATTTGCATTTCTTCTGTCAAGTATCAATTCGGTCAGATTAGTCCCTCGAGAAATTGGAGACTAATTCGATACATTCAAGGACTTATTTAGCTGATTAGATGTATTTAGAGACATTGGGTATGATTTGATTGATTGCAATGTAGTCAGGATCGAGATCCTACTAGGATCGGTCGGCCGGTGAAAGAACATAAACACAAGGAACGTAACACGGTTCGTAAGTAGGATTGGTAGGTTGTTGATAGAGTTGAGAGAAATAGATAGAGAAAATAGAGGGAAAACAGAGGAGCCAAGCATAAAAACAGAGGTAATAGAGGAAAAACAGAGGAACCATGCAACAAAATAAAGAAAAACAGAGGAAACAGAGGAAAAACGGCAAAAAAAACAGAGGAAAAATGGCAAAAAACAGAGGAAACAGAGCAAAACCGAACCAGAGTAAAGTCGAAGCACGATCGAGGTGCTGTGGCACGTAAGATCGTGCGATCCTATGACCTGGGACTCGATCTTGGCTACATTGTTTGATTGTTTAGAGATTAATGCGACCAACGGTAAATCTTTCTGAACTAAATTGATTATTGTTCTAAAGAACTTGATAGCAGTTGGACACTATCTCTCATAATATTATAGTTATACATTCATATAATGGAAAGGGGAGGAAGAGATTTGACATGCTATATTTCGTTCGAGGAGAGATCTAATCCATTTCTTAAAAGAAATGAACATCTCAATAAATAAAGTTTTAGTGTATAAATGTGTAATTAATGTCACCAATTTTATGATGCATGCACTGATATCATTTATTCATTCAAAACTATAGTTATGGACACCTGTTTCTTTTGAAAAATAGCGAGAATCCTTACCCATTTCCTTCAACTAAATTGATAATTCAATAGGTACAGTGTAGTCATGATCAAGATCCTAAGTAGGATTGGTCGGCCGGTGAAGGATCGGTAGGTTGTTCATAGAGTTGAGAGAAAAAACAGAGAAAATAGAGGAAAAACAGAGGAAACAAGCACACAAAAAAACAGAGGTAAAACAGCAAAAAACAGAAAACAGAGCAAAAATGAACCTGAGTAAAGTCGGAGCACGGTTGAGGTGACGTGGGTACAATAGATTTCCTTTTAAATGCAAATTAAATGCAATAATTTAGTGTTAAAATATTATACTTAATGGTTAATGGACTTTTAAAGTGATGGTGCAATAAAGCATTGACTTTTGAATGTTTTTCTTTGACTATTTGTTGCGGCTTTGCATTTTGACTGGTAGTCTTCAATTCTGATTTGTGACGCTTGCATTAATTGTTGGTAGCATACTTGATTTAGTTACCTACCAGAACTGAAACAATAATTTAACTAAGTTGAAATATTGTTTTCATGTGAAGAACTCTTATTTTATTTTCAGAGTTCAATGGAGGATACTGTAAAAGCATTAGAGAAGAAATGGGCTGCAGTGCAGGAAAATGCACTTAAACAGCCTTCCCCAGGTATTATATCTTACTTATGTTATGTTTATATATGTGTGTCGGTGTATGTGAAGGAAAAATTAAATTATTATCTGAGTGCATAATGATGTCCTTTGTTTGTTTCTTTTGATCCTTCCTTGCCTTTTTTGTATTTGGTTGCTTTAGGTGGCATATATTCTGTACTTAATGTGTACATCGGTCATGGATCCTCTGGAACCTTTGATTGATCGATCACACTGAGTAAAGATGTCAAGAACTTGTTTATAGTAGGGAAGTTTCAAAGCATGATTAATAATTATGTATGCAAAATGCCATTTGAACTTGGTATAGTTTTGTTTATGGGCACTAAATGATTCAATAAAAATTCAACATTGCACTGTATTATGTGATTTCTTGTATGTTGGAAAATCGTCAAGCATGTTTGCTTTTAAACATTAAATTCGAGAAGTTATAGTACTTCTTTAGTGATATGTTACCAAATGGTTTTATTCTGCATGTAATAATAGTTTTCAAAATGCAGACAGAAACTCTTGTTGGGTTTTGTTTTGGAGTATTTCTAGGTTGGACATGTAGAGGGACTAGGCTGCTTTTCTAGGATGTATTTTCTTTTTTGGTTTTTTTCCCCCTGATGCTCCTGTTTGTACTTTTCTAAATGAATTATTCTATCAAAAGGAATAAAAGAAAGAATCCAGTTGGGGGTGGCTTTGATTCCGTTCCATCTCCGTAATCTTATCGTTTTTATTGTTTAAATTCTGTCACTAATTTTGCATACTTAAGCTTCATCTTGCAAGCATTATTTTAGCTTTAAACCTTTCTTAACTTGTTTTGCAGCACAAAGAGAGAAGACATTAGATAAACAACTTCATGGTTTACTTCAGCAACTAGCAGTTAAACAGGTGCTTTCCATACTTCATTGTTTATGTTTCTACGTGCTTGATATTTTGTGTTTAAAAAATAGTTTATTTTATCTTTCTATCGCCACACAAAATGGCGATGGTTGAATAATAACGACTATTTGATTGATTATCGGGTTGTTAATTTTGTGTATTTGATTGCCTTCTGAAGATGAGTCTAATAAGCTGTCTTTCTTTCTTGCTTTCAGACACAAGCCGAGGGCTTACTTGAAGAAATTCACCCGAAAGAGGTGGAGCTGGAAAGATTGAATGCACAATGGCGACAACTGCAAAGCAACAACTCAGACGTGAACAATGCTAGAAATCGTTTTGTTAGAGGCTCCTCTGATAAGGTACATGGTTTGTCGGATTATGATGGTCATCAGAGGCTTCCATACCATTCTGCAGGCAGAACTGAAAGCCAGCAGAGGCTTATGCTACTTAGGTCGGCATTTGTGCTTTATATTTTAGCGTTAAACATAATTGTATTTATCAGGATATCATTTTGACCAAAATTAAAATTATCTTATTACATTTTACGACTGAACCTTTTTCTTAGTTGATTATGACTGGACCTTTGTTTGTACTTATGAATACCTCGTGTGTGTGTGTGTGTATATATAACAAGAAGTTTCTGGAAAAGTTAACTCGTTAACCAAAACTCATGTTACATCTGTTCATACTGCGTAGAGTTACTTACAGCCGAAGAAAAGTTAACGAGAGGAAAATCGTTGAATACAAAAAAGATTAGACGTTATGATAGCGGTTGAAGTTGCAAGATTTTATGATAAAAGGAAGAGAAAATAACAGGAACCTAAAATATTATTGATACTTGATATAAAAAACTAAACACTAGACCCTATTTATAGGGACACATAAACTCAATCCTAGATAAATAGAAATCATAAACTGATTCTAGGAAATAACTTACAATACTCAAATATAATATAAAAGATATTATGAGATTTTTTATAATATTCTAATAAATAGTTATGGTAAGCTTTAGTTACTTTTGAGTTTGTTGTTGGGAGAGATGATGGTTGATAAAGAAGCAACTAGTTCAAGTTATTATTGTTCTGTGACCTTTCTGTTAAGTGATTTTCACCATGGAAGTCTAATCTATAGGATGAAGTAATTTGTGTTCCTTCAACTTGCAAATTTCTTGAATCTTGTATATACCTTCCTATTCCTAGTTACCTGAGAGAGCATTTACTTATTGAATCGAATTTAGAGATTATGCATCGACTATAGAACTTCATCATATCAGATAGTTTTACACACTCAACATAAAATTCTTAAACTCTTGAATATTTAAATTTTTATATTCATAATTTGACAGCAAGGTTTGATGTTAATAGGGGAAAGAATATATAAGTATATTTATTTATACCAAAAAAAGGAAAGGAAAAAAAAAAAGAATATATAACTATATTTCATGGTTTTTTTTGTTCATGATATGTATGACAGCCCCAAGAATGGACAGATAGCTACACCTATGCTTAGCCTCAAAGCTCAAGTCAGTATCATTATCCAGGCACATGAAATTGCTTACTACCATACGTCAATGCATTGCTTTGAGATCTAG

Protein sequence

>MS.gene37212.t1

AQLREETLKEENAAFENAISNCENKIKEKMEEAELLRTKLEEMDEIEKKLRAELENMQSRSSVNASQSLISEGWEEENKINNRAGFDADAEALKTTMLEKLDEKKKELSSMEDTVKALEKKWAAVQENALKQPSPAQREKTLDKQLHGLLQQLAVKQTQAEGLLEEIHPKEVELERLNAQWRQLQSNNSDVNNARNRFVRGSSDKVHGLSDYDGHQRLPYHSAGRTESQQRLMLLSPKNGQIATPMLSLKAQVSIIIQAHEIAYYHTSMHCFEI