Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42310.t1 | XP_013462162.1 | 96.4 | 466 | 17 | 0 | 1 | 466 | 1 | 466 | 3.30E-252 | 880.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42310.t1 | Q81ST7 | 32.8 | 134 | 86 | 2 | 328 | 461 | 245 | 374 | 5.3e-09 | 63.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42310.t1 | A0A072V2W7 | 96.4 | 466 | 17 | 0 | 1 | 466 | 1 | 466 | 2.4e-252 | 880.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene42310 | 0.866953 | 1.95E-65 | -1.69E-46 |
| MS.gene049190 | MS.gene42310 | 0.820931 | 5.29E-53 | -1.69E-46 |
| MS.gene049350 | MS.gene42310 | 0.821746 | 3.43E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene42310 | 0.825976 | 3.49E-54 | -1.69E-46 |
| MS.gene049744 | MS.gene42310 | 0.829952 | 3.86E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene42310 | 0.844291 | 8.28E-59 | -1.69E-46 |
| MS.gene049887 | MS.gene42310 | 0.810723 | 1.00E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene42310 | 0.832334 | 1.00E-55 | -1.69E-46 |
| MS.gene050901 | MS.gene42310 | 0.827615 | 1.42E-54 | -1.69E-46 |
| MS.gene051029 | MS.gene42310 | 0.810413 | 1.17E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene42310 | 0.80903 | 2.31E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene42310 | 0.843797 | 1.12E-58 | -1.69E-46 |
| MS.gene051279 | MS.gene42310 | 0.830147 | 3.46E-55 | -1.69E-46 |
| MS.gene051388 | MS.gene42310 | 0.817254 | 3.63E-52 | -1.69E-46 |
| MS.gene05157 | MS.gene42310 | 0.82685 | 2.16E-54 | -1.69E-46 |
| MS.gene051664 | MS.gene42310 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene42310 | 0.836021 | 1.19E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene42310 | 0.844865 | 5.80E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene42310 | 0.851944 | 6.38E-61 | -1.69E-46 |
| MS.gene052307 | MS.gene42310 | 0.846816 | 1.71E-59 | -1.69E-46 |
| MS.gene052311 | MS.gene42310 | 0.83109 | 2.03E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene42310 | 0.807216 | 5.63E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene42310 | 0.818672 | 1.73E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene42310 | 0.862675 | 4.28E-64 | -1.69E-46 |
| MS.gene052665 | MS.gene42310 | 0.81282 | 3.50E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene42310 | 0.825493 | 4.55E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene42310 | 0.825072 | 5.72E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene42310 | 0.857376 | 1.70E-62 | -1.69E-46 |
| MS.gene053122 | MS.gene42310 | 0.803903 | 2.79E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene42310 | 0.817436 | 3.30E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene42310 | 0.880417 | 5.59E-70 | -1.69E-46 |
| MS.gene053174 | MS.gene42310 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene42310 | 0.831022 | 2.11E-55 | -1.69E-46 |
| MS.gene053536 | MS.gene42310 | 0.80835 | 3.23E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene42310 | 0.806276 | 8.90E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene42310 | 0.810401 | 1.17E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene42310 | 0.813945 | 1.98E-51 | -1.69E-46 |
| MS.gene053621 | MS.gene42310 | 0.802256 | 6.12E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene42310 | 0.801817 | 7.53E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene42310 | 0.807078 | 6.03E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene42310 | 0.876579 | 1.25E-68 | -1.69E-46 |
| MS.gene054651 | MS.gene42310 | 0.806665 | 7.37E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene42310 | 0.846971 | 1.55E-59 | -1.69E-46 |
| MS.gene055083 | MS.gene42310 | 0.806859 | 6.70E-50 | -1.69E-46 |
| MS.gene055144 | MS.gene42310 | 0.818209 | 2.21E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene42310 | 0.858302 | 9.05E-63 | -1.69E-46 |
| MS.gene055466 | MS.gene42310 | 0.83726 | 5.77E-57 | -1.69E-46 |
| MS.gene055468 | MS.gene42310 | 0.823505 | 1.34E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene42310 | 0.848762 | 4.98E-60 | -1.69E-46 |
| MS.gene055513 | MS.gene42310 | 0.865621 | 5.17E-65 | -1.69E-46 |
| MS.gene055537 | MS.gene42310 | 0.857914 | 1.18E-62 | -1.69E-46 |
| MS.gene055580 | MS.gene42310 | -0.82585 | 3.74E-54 | -1.69E-46 |
| MS.gene055764 | MS.gene42310 | 0.800357 | 1.50E-48 | -1.69E-46 |
| MS.gene055890 | MS.gene42310 | 0.804052 | 2.60E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene42310 | 0.818257 | 2.15E-52 | -1.69E-46 |
| MS.gene056005 | MS.gene42310 | 0.82195 | 3.07E-53 | -1.69E-46 |
| MS.gene056043 | MS.gene42310 | -0.809623 | 1.73E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene42310 | 0.829787 | 4.23E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene42310 | 0.857787 | 1.29E-62 | -1.69E-46 |
| MS.gene056507 | MS.gene42310 | 0.865081 | 7.65E-65 | -1.69E-46 |
| MS.gene056553 | MS.gene42310 | 0.82274 | 2.02E-53 | -1.69E-46 |
| MS.gene057034 | MS.gene42310 | 0.815153 | 1.07E-51 | -1.69E-46 |
| MS.gene057132 | MS.gene42310 | 0.804475 | 2.12E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene42310 | 0.804238 | 2.38E-49 | -1.69E-46 |
| MS.gene058087 | MS.gene42310 | 0.803436 | 3.49E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene42310 | 0.861333 | 1.10E-63 | -1.69E-46 |
| MS.gene058668 | MS.gene42310 | 0.847662 | 1.00E-59 | -1.69E-46 |
| MS.gene058852 | MS.gene42310 | 0.834552 | 2.81E-56 | -1.69E-46 |
| MS.gene058919 | MS.gene42310 | 0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene42310 | 0.811914 | 5.52E-51 | -1.69E-46 |
| MS.gene059154 | MS.gene42310 | 0.8145 | 1.49E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene42310 | 0.811855 | 5.68E-51 | -1.69E-46 |
| MS.gene059424 | MS.gene42310 | 0.804259 | 2.35E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene42310 | 0.807462 | 5.00E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene42310 | 0.873799 | 1.11E-67 | -1.69E-46 |
| MS.gene059625 | MS.gene42310 | 0.826361 | 2.83E-54 | -1.69E-46 |
| MS.gene059725 | MS.gene42310 | 0.834947 | 2.23E-56 | -1.69E-46 |
| MS.gene059965 | MS.gene42310 | 0.803202 | 3.90E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene42310 | 0.812365 | 4.40E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene42310 | 0.819875 | 9.23E-53 | -1.69E-46 |
| MS.gene060603 | MS.gene42310 | 0.812186 | 4.81E-51 | -1.69E-46 |
| MS.gene060637 | MS.gene42310 | 0.814416 | 1.56E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene42310 | 0.822356 | 2.48E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene42310 | 0.805725 | 1.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42310.t1 | MTR_3g112280 | 96.352 | 466 | 17 | 0 | 1 | 466 | 1 | 466 | 0.0 | 925 |
| MS.gene42310.t1 | MTR_3g112280 | 96.354 | 384 | 14 | 0 | 1 | 384 | 1 | 384 | 0.0 | 764 |
| MS.gene42310.t1 | MTR_4g011910 | 29.372 | 446 | 238 | 10 | 72 | 456 | 224 | 653 | 1.28e-41 | 157 |
| MS.gene42310.t1 | MTR_4g069840 | 28.698 | 453 | 246 | 11 | 72 | 461 | 194 | 632 | 3.05e-39 | 150 |
| MS.gene42310.t1 | MTR_3g112270 | 44.706 | 170 | 44 | 5 | 283 | 451 | 34 | 154 | 2.88e-30 | 115 |
| MS.gene42310.t1 | MTR_2g102283 | 46.610 | 118 | 62 | 1 | 345 | 461 | 592 | 709 | 5.97e-22 | 99.8 |
| MS.gene42310.t1 | MTR_2g102283 | 29.924 | 264 | 140 | 11 | 68 | 303 | 248 | 494 | 3.99e-19 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42310.t1 | AT1G75420 | 76.368 | 457 | 103 | 3 | 8 | 464 | 7 | 458 | 0.0 | 677 |
| MS.gene42310.t1 | AT1G75420 | 78.738 | 428 | 87 | 2 | 37 | 464 | 9 | 432 | 0.0 | 652 |
| MS.gene42310.t1 | AT1G19710 | 73.617 | 470 | 117 | 4 | 1 | 464 | 1 | 469 | 0.0 | 650 |
| MS.gene42310.t1 | AT1G75420 | 82.038 | 373 | 67 | 0 | 92 | 464 | 1 | 373 | 0.0 | 637 |
| MS.gene42310.t1 | AT1G52420 | 29.801 | 453 | 250 | 11 | 68 | 461 | 226 | 669 | 1.75e-44 | 166 |
| MS.gene42310.t1 | AT3G15940 | 28.690 | 481 | 244 | 13 | 68 | 461 | 228 | 696 | 6.41e-38 | 147 |
| MS.gene42310.t1 | AT3G15940 | 28.690 | 481 | 244 | 13 | 68 | 461 | 228 | 696 | 6.41e-38 | 147 |
Find 111 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATAACATTGTGAAAT+TGG | 0.197530 | 3.2:-89554526 | MS.gene42310:CDS |
| ACGAAATGCCATTGCTTCTA+TGG | 0.222266 | 3.2:+89555846 | None:intergenic |
| TCGCACGAACTATCTCTTTC+TGG | 0.222877 | 3.2:-89558419 | MS.gene42310:CDS |
| GTGGCTGGATGCCGTCTTAA+AGG | 0.261650 | 3.2:-89557172 | MS.gene42310:CDS |
| GGGTTCTTCGTGAGCATGTT+AGG | 0.272900 | 3.2:-89556798 | MS.gene42310:CDS |
| AATAGGACCAGGGAGAGTTT+AGG | 0.282610 | 3.2:-89557006 | MS.gene42310:CDS |
| TGATCAGGTTATTTATAGTT+TGG | 0.290255 | 3.2:-89558306 | MS.gene42310:CDS |
| TGGAAATAGCAAGGAACTTA+TGG | 0.291694 | 3.2:-89556848 | MS.gene42310:CDS |
| AGATGTACAACATAAGTTTC+AGG | 0.314019 | 3.2:+89556871 | None:intergenic |
| TGAAAGTTTGCAGCTCATTC+AGG | 0.315271 | 3.2:-89556442 | MS.gene42310:CDS |
| GAGAGTGAAAGAGAGGTTTC+TGG | 0.327030 | 3.2:-89554457 | MS.gene42310:CDS |
| ATAGGACCAGGGAGAGTTTA+GGG | 0.339089 | 3.2:-89557005 | MS.gene42310:intron |
| TCTTTGCATGCTATAGTTGT+AGG | 0.358411 | 3.2:-89556399 | MS.gene42310:CDS |
| GTCACACCATCCTTGCCTTC+AGG | 0.359263 | 3.2:+89554555 | None:intergenic |
| CAGTCACGGGGAGAATGTTT+TGG | 0.367113 | 3.2:-89555877 | MS.gene42310:CDS |
| TGTTGAGAAGAGGCTGACTA+TGG | 0.372554 | 3.2:-89554496 | MS.gene42310:CDS |
| ACTGTGGAGATCGTGGTTAA+TGG | 0.373098 | 3.2:-89554597 | MS.gene42310:CDS |
| GAAACTTATGTTGTACATCT+TGG | 0.390726 | 3.2:-89556868 | MS.gene42310:CDS |
| AATGTTGGACAGAGGAGTTC+AGG | 0.395727 | 3.2:-89558276 | MS.gene42310:intron |
| CTGCAGAGTACTGGAAGAAT+AGG | 0.404454 | 3.2:-89557023 | MS.gene42310:CDS |
| CTGTGGAGATCGTGGTTAAT+GGG | 0.408149 | 3.2:-89554596 | MS.gene42310:CDS |
| TGCTCAGACAAAGTTTGAAA+TGG | 0.409480 | 3.2:-89556364 | MS.gene42310:CDS |
| TTCATGAAATCCAAGGGGCT+TGG | 0.414417 | 3.2:+89558464 | None:intergenic |
| GTGTTGGTTCTGATGTTGTT+TGG | 0.416917 | 3.2:-89558355 | MS.gene42310:CDS |
| ATCATAGCACCTGCAACAAA+AGG | 0.424798 | 3.2:+89557060 | None:intergenic |
| TACAGCTCTTAAAGCTGATC+TGG | 0.435509 | 3.2:-89557223 | MS.gene42310:CDS |
| ATCGTGGTTAATGGGACAAC+CGG | 0.438418 | 3.2:-89554588 | MS.gene42310:CDS |
| CAGGTGTTTCACGTGGTAAA+GGG | 0.445043 | 3.2:-89556491 | MS.gene42310:CDS |
| GCAGGTGTTTCACGTGGTAA+AGG | 0.451121 | 3.2:-89556492 | MS.gene42310:intron |
| CTAGGTAAGGAGCCACTGTA+AGG | 0.457535 | 3.2:+89556280 | None:intergenic |
| ATGAAAGCTAGTAACATTAA+CGG | 0.460740 | 3.2:+89558614 | None:intergenic |
| CCTGCCTGCAAAAGGTGAAA+AGG | 0.463848 | 3.2:-89557253 | MS.gene42310:CDS |
| CTGATTCCGTTGTGCTTCGA+AGG | 0.470227 | 3.2:+89558523 | None:intergenic |
| CACATATAACTGCAGAGTAC+TGG | 0.470342 | 3.2:-89557032 | MS.gene42310:CDS |
| CTTTGTGGTGTTGCATGAAT+CGG | 0.474570 | 3.2:+89558547 | None:intergenic |
| ATTCTAAATACTGCTGTAGC+TGG | 0.475189 | 3.2:-89557198 | MS.gene42310:CDS |
| GGCATTTCGTCTGCCTGTAC+TGG | 0.475966 | 3.2:-89555833 | MS.gene42310:intron |
| TCCGTCGGAAATGCACCATC+TGG | 0.478042 | 3.2:-89558488 | MS.gene42310:CDS |
| TAGTTTGGAGAGTAAAATGT+TGG | 0.480059 | 3.2:-89558291 | MS.gene42310:CDS |
| TTGCATGAATCGGAATTGTT+CGG | 0.482273 | 3.2:+89558557 | None:intergenic |
| GCCTTCAGGATGCAGCAAAC+CGG | 0.485028 | 3.2:+89554569 | None:intergenic |
| TGCTGTAGCTGGAAAGTGGC+TGG | 0.486096 | 3.2:-89557187 | MS.gene42310:CDS |
| TGATAGGTCCTGCCTGCAAA+AGG | 0.486905 | 3.2:-89557261 | MS.gene42310:intron |
| TGTTCTTGTTCAGAATTCTC+AGG | 0.489341 | 3.2:-89556247 | MS.gene42310:intron |
| GGTTCTTCGTGAGCATGTTA+GGG | 0.489601 | 3.2:-89556797 | MS.gene42310:CDS |
| AGGCTGACTATGGGAAAGAA+AGG | 0.492284 | 3.2:-89554486 | MS.gene42310:CDS |
| TTGTGCTTCGAAGGTCTTTG+TGG | 0.502365 | 3.2:+89558532 | None:intergenic |
| TGAATCCACCATAAAACCTT+CGG | 0.503051 | 3.2:+89557129 | None:intergenic |
| GTATCCTGCTGAACATGATC+AGG | 0.504998 | 3.2:-89558321 | MS.gene42310:CDS |
| CTTTGCATGCTATAGTTGTA+GGG | 0.505856 | 3.2:-89556398 | MS.gene42310:CDS |
| CAGAAGATAGTGTAGCAAAG+AGG | 0.510374 | 3.2:-89556819 | MS.gene42310:CDS |
| CTTCGATTTCATGAAATCCA+AGG | 0.514716 | 3.2:+89558457 | None:intergenic |
| TTCGATTTCATGAAATCCAA+GGG | 0.516013 | 3.2:+89558458 | None:intergenic |
| GGCGAAGCATTCAGTAGCAT+TGG | 0.516216 | 3.2:-89558651 | MS.gene42310:CDS |
| TGGTGCATTTCCGACGGAAG+AGG | 0.519098 | 3.2:+89558493 | None:intergenic |
| CTGCAATTCTATGTGACATA+TGG | 0.519548 | 3.2:+89554430 | None:intergenic |
| GGTATGAGAGAGTGAAAGAG+AGG | 0.524664 | 3.2:-89554464 | MS.gene42310:CDS |
| GCCAATTCCATCAAAAGTAA+AGG | 0.527566 | 3.2:+89558392 | None:intergenic |
| AGAAGATAGTGTAGCAAAGA+GGG | 0.528791 | 3.2:-89556818 | MS.gene42310:CDS |
| ATAACCTGATCATGTTCAGC+AGG | 0.529328 | 3.2:+89558317 | None:intergenic |
| AGTTACCCTCGTTCTTCCGA+AGG | 0.529697 | 3.2:-89557145 | MS.gene42310:CDS |
| TCCAAGGGGCTTGGACCAGA+TGG | 0.531755 | 3.2:+89558473 | None:intergenic |
| GAGCATGTTAGGGAATCTCT+TGG | 0.531903 | 3.2:-89556787 | MS.gene42310:CDS |
| ACAACTATAGCATGCAAAGA+TGG | 0.532628 | 3.2:+89556402 | None:intergenic |
| TAGCATTGGCGAAGAAAAGA+TGG | 0.533158 | 3.2:-89558637 | MS.gene42310:CDS |
| GAAATCGAAGCTAGTTCTCA+TGG | 0.534458 | 3.2:-89558444 | MS.gene42310:CDS |
| AGTGAAGGACGTACCAGTAC+AGG | 0.541451 | 3.2:+89555820 | None:intergenic |
| CAAGAACATCAATAGAAGCT+AGG | 0.543899 | 3.2:+89556262 | None:intergenic |
| AACATACCCTAAACTCTCCC+TGG | 0.543946 | 3.2:+89556999 | None:intergenic |
| GGTGCATTTCCGACGGAAGA+GGG | 0.544846 | 3.2:+89558494 | None:intergenic |
| TTCACAATGTTATGTGCAAG+AGG | 0.545519 | 3.2:+89554531 | None:intergenic |
| TTGCAGGGCACTGCAGCTGG+AGG | 0.549732 | 3.2:-89554621 | MS.gene42310:intron |
| ACCATCTGGTCCAAGCCCCT+TGG | 0.551441 | 3.2:-89558474 | MS.gene42310:CDS |
| TAGTGACATACTATTTATGA+TGG | 0.554440 | 3.2:+89556738 | None:intergenic |
| CTGCATCCTGAAGGCAAGGA+TGG | 0.559919 | 3.2:-89554561 | MS.gene42310:CDS |
| TCATAGCACCTGCAACAAAA+GGG | 0.561260 | 3.2:+89557061 | None:intergenic |
| ACATCAATAGAAGCTAGGTA+AGG | 0.568775 | 3.2:+89556267 | None:intergenic |
| ATGTTCAGCAGGATACTGAT+TGG | 0.569395 | 3.2:+89558328 | None:intergenic |
| TAGAATTGCAGTGGTTCTCA+AGG | 0.573300 | 3.2:-89554418 | MS.gene42310:CDS |
| ACCGGTTTGCTGCATCCTGA+AGG | 0.579599 | 3.2:-89554570 | MS.gene42310:CDS |
| AGTACTGGAAGAATAGGACC+AGG | 0.581747 | 3.2:-89557017 | MS.gene42310:CDS |
| GAGCTGCAAACTTTCATGAA+AGG | 0.583871 | 3.2:+89556449 | None:intergenic |
| GAGAGTAAAATGTTGGACAG+AGG | 0.584323 | 3.2:-89558284 | MS.gene42310:CDS |
| CACGAACTATCTCTTTCTGG+TGG | 0.584552 | 3.2:-89558416 | MS.gene42310:CDS |
| AAGGATAACCATAGAAGCAA+TGG | 0.585803 | 3.2:-89555854 | MS.gene42310:CDS |
| GTTGAGAAGAGGCTGACTAT+GGG | 0.594669 | 3.2:-89554495 | MS.gene42310:CDS |
| GGCTGACTATGGGAAAGAAA+GGG | 0.596427 | 3.2:-89554485 | MS.gene42310:CDS |
| ACCAGATGGTGCATTTCCGA+CGG | 0.597524 | 3.2:+89558487 | None:intergenic |
| TTTGCTGCATCCTGAAGGCA+AGG | 0.599998 | 3.2:-89554565 | MS.gene42310:CDS |
| CAGATTCACCCCTCTTCCGT+CGG | 0.601811 | 3.2:-89558503 | MS.gene42310:CDS |
| TGGTGGATTCATGAAATGCG+AGG | 0.616138 | 3.2:-89557117 | MS.gene42310:CDS |
| TGGCAAGTCATGTTGAGAAG+AGG | 0.617321 | 3.2:-89554506 | MS.gene42310:CDS |
| CACTGCAGCTGGAGGCACTG+TGG | 0.621939 | 3.2:-89554613 | MS.gene42310:CDS |
| GCGAGGGCATTATTTCAAAG+AGG | 0.622892 | 3.2:-89557100 | MS.gene42310:CDS |
| TGGAGGCACTGTGGAGATCG+TGG | 0.626460 | 3.2:-89554604 | MS.gene42310:CDS |
| GTGCATTTCCGACGGAAGAG+GGG | 0.627718 | 3.2:+89558495 | None:intergenic |
| ATACTGCTGTAGCTGGAAAG+TGG | 0.634836 | 3.2:-89557191 | MS.gene42310:CDS |
| TGTACATCTTGGAAATAGCA+AGG | 0.635730 | 3.2:-89556857 | MS.gene42310:CDS |
| GGTGGATTCATGAAATGCGA+GGG | 0.637828 | 3.2:-89557116 | MS.gene42310:CDS |
| TAGGTAAGGAGCCACTGTAA+GGG | 0.638700 | 3.2:+89556281 | None:intergenic |
| TGTTAACAAAACCCTTACAG+TGG | 0.646175 | 3.2:-89556292 | MS.gene42310:CDS |
| AACTTTCATGAAAGGCACGA+AGG | 0.649061 | 3.2:+89556457 | None:intergenic |
| TTAAATGCAGGTGTTTCACG+TGG | 0.656172 | 3.2:-89556498 | MS.gene42310:intron |
| ATAAAACCTTCGGAAGAACG+AGG | 0.660037 | 3.2:+89557139 | None:intergenic |
| TATGTCACATAGAATTGCAG+TGG | 0.663579 | 3.2:-89554427 | MS.gene42310:CDS |
| TAAAACCTTCGGAAGAACGA+GGG | 0.689246 | 3.2:+89557140 | None:intergenic |
| CAAAGACCTTCGAAGCACAA+CGG | 0.690089 | 3.2:-89558529 | MS.gene42310:CDS |
| TAGCACCTGCAACAAAAGGG+AGG | 0.690112 | 3.2:+89557064 | None:intergenic |
| GTACTGGAAGAATAGGACCA+GGG | 0.700205 | 3.2:-89557016 | MS.gene42310:CDS |
| TCGATTTCATGAAATCCAAG+GGG | 0.703979 | 3.2:+89558459 | None:intergenic |
| TTCGATTCATACCAGTCACG+GGG | 0.720657 | 3.2:-89555889 | MS.gene42310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTATTAAATGAATC+TGG | + | chr3.2:89556070-89556089 | None:intergenic | 10.0% |
| !! | TAATTCATTGTATAAATTAA+CGG | - | chr3.2:89555040-89555059 | MS.gene42310:intron | 10.0% |
| !! | TAATTTATACAATGAATTAT+AGG | + | chr3.2:89555039-89555058 | None:intergenic | 10.0% |
| !!! | AAAGTATTATTTTAGTTTTT+GGG | - | chr3.2:89557112-89557131 | MS.gene42310:CDS | 10.0% |
| !!! | TAAAGTATTATTTTAGTTTT+TGG | - | chr3.2:89557111-89557130 | MS.gene42310:CDS | 10.0% |
| !! | AAAAATAATACTGTTAAAGT+TGG | - | chr3.2:89558059-89558078 | MS.gene42310:intron | 15.0% |
| !! | ATGAAACCAAAATAATAAAA+AGG | + | chr3.2:89557522-89557541 | None:intergenic | 15.0% |
| !!! | ACTATTTTTTTACTAATTTG+TGG | - | chr3.2:89557706-89557725 | MS.gene42310:intron | 15.0% |
| !! | AGTAAAAAAATAGTTACACA+GGG | + | chr3.2:89557700-89557719 | None:intergenic | 20.0% |
| !! | ATGAAACTAATATTATTCTG+AGG | - | chr3.2:89557990-89558009 | MS.gene42310:intron | 20.0% |
| !! | TAACACGTATAGATATAAAA+GGG | + | chr3.2:89557280-89557299 | None:intergenic | 20.0% |
| !! | TAGTAAAAAAATAGTTACAC+AGG | + | chr3.2:89557701-89557720 | None:intergenic | 20.0% |
| !! | TATAAATTAACGGTAGAATT+TGG | - | chr3.2:89555050-89555069 | MS.gene42310:intron | 20.0% |
| !! | TGAACTATGTTTATATCAAA+TGG | + | chr3.2:89555595-89555614 | None:intergenic | 20.0% |
| !! | TTAACACGTATAGATATAAA+AGG | + | chr3.2:89557281-89557300 | None:intergenic | 20.0% |
| !!! | CATATTTGGAATTATGAATA+GGG | - | chr3.2:89554914-89554933 | MS.gene42310:intron | 20.0% |
| !!! | CATTTTAATTCTACAAAATC+AGG | + | chr3.2:89556151-89556170 | None:intergenic | 20.0% |
| !!! | TAGTTATGTTTTTCCATATT+TGG | - | chr3.2:89554900-89554919 | MS.gene42310:intron | 20.0% |
| !!! | TTTTGTTAACAAAATGAACA+CGG | + | chr3.2:89556741-89556760 | None:intergenic | 20.0% |
| !!! | TTTTTTAGATTTTTTTCGAC+AGG | + | chr3.2:89557564-89557583 | None:intergenic | 20.0% |
| ! | AACTTGTGTAACATTAATTG+AGG | - | chr3.2:89558120-89558139 | MS.gene42310:intron | 25.0% |
| ! | AAGGAAAATTAGTGAATTTG+AGG | + | chr3.2:89557841-89557860 | None:intergenic | 25.0% |
| ! | AATGAATATTGAATGAGTAC+AGG | + | chr3.2:89556330-89556349 | None:intergenic | 25.0% |
| ! | ACAATAAGATCAAAACGAAA+AGG | + | chr3.2:89554813-89554832 | None:intergenic | 25.0% |
| ! | AGGTACACACTATATTAAAT+TGG | + | chr3.2:89556466-89556485 | None:intergenic | 25.0% |
| ! | ATATAAACATAGTTCACATG+TGG | - | chr3.2:89555599-89555618 | MS.gene42310:intron | 25.0% |
| ! | ATGAAAGCTAGTAACATTAA+CGG | + | chr3.2:89554431-89554450 | None:intergenic | 25.0% |
| ! | CCTATTCATAATTCCAAATA+TGG | + | chr3.2:89554916-89554935 | None:intergenic | 25.0% |
| ! | GTAAAAAAATAGTTACACAG+GGG | + | chr3.2:89557699-89557718 | None:intergenic | 25.0% |
| ! | TAGTGACATACTATTTATGA+TGG | + | chr3.2:89556307-89556326 | None:intergenic | 25.0% |
| ! | TGATCAGGTTATTTATAGTT+TGG | - | chr3.2:89554736-89554755 | MS.gene42310:intron | 25.0% |
| ! | TTAAAACAACTAGGATAACA+TGG | + | chr3.2:89557894-89557913 | None:intergenic | 25.0% |
| ! | TTACAAATAGATTCCGAAAT+TGG | + | chr3.2:89558339-89558358 | None:intergenic | 25.0% |
| !! | ATCATGCAATCTAAAGTTTA+AGG | + | chr3.2:89556908-89556927 | None:intergenic | 25.0% |
| !! | CCATATTTGGAATTATGAAT+AGG | - | chr3.2:89554913-89554932 | MS.gene42310:intron | 25.0% |
| !! | TCAAACTTTTGACATTATGA+TGG | - | chr3.2:89556878-89556897 | MS.gene42310:CDS | 25.0% |
| !! | TCATGCAATCTAAAGTTTAA+GGG | + | chr3.2:89556907-89556926 | None:intergenic | 25.0% |
| !! | TGTCTGCCTTTTTATTATTT+TGG | - | chr3.2:89557513-89557532 | MS.gene42310:intron | 25.0% |
| !! | TTCTGTTAAAAACTTTTGCA+GGG | - | chr3.2:89558406-89558425 | MS.gene42310:CDS | 25.0% |
| !! | TTTCTGTTAAAAACTTTTGC+AGG | - | chr3.2:89558405-89558424 | MS.gene42310:CDS | 25.0% |
| !!! | ACCTTTTTTTTTCATCTGAT+TGG | - | chr3.2:89555754-89555773 | MS.gene42310:intron | 25.0% |
| !!! | ATACATTACCAAGTTGATTA+TGG | - | chr3.2:89556832-89556851 | MS.gene42310:CDS | 25.0% |
| !!! | TGATCTTATTGTTGTTTACT+TGG | - | chr3.2:89554821-89554840 | MS.gene42310:intron | 25.0% |
| !!! | TGCAATATGTTTTGGAAATT+AGG | + | chr3.2:89556942-89556961 | None:intergenic | 25.0% |
| AAATAGGGATTTGACTCAAA+TGG | - | chr3.2:89554952-89554971 | MS.gene42310:intron | 30.0% | |
| ACAAATCGATATGAGAAGAA+AGG | + | chr3.2:89557008-89557027 | None:intergenic | 30.0% | |
| ACAACTCAAATATCTAGTGA+AGG | + | chr3.2:89557240-89557259 | None:intergenic | 30.0% | |
| ACAATGGTGAAATCCAATAA+GGG | + | chr3.2:89555161-89555180 | None:intergenic | 30.0% | |
| ACGTATAGATATAAAAGGGA+AGG | + | chr3.2:89557276-89557295 | None:intergenic | 30.0% | |
| ACGTCAAAAAGTTCATTAAG+TGG | + | chr3.2:89555510-89555529 | None:intergenic | 30.0% | |
| AGATGTACAACATAAGTTTC+AGG | + | chr3.2:89556174-89556193 | None:intergenic | 30.0% | |
| AGTTGCAACTAACAAATGAA+TGG | + | chr3.2:89558104-89558123 | None:intergenic | 30.0% | |
| ATTCAGTGTGTCTACAAATA+GGG | - | chr3.2:89554937-89554956 | MS.gene42310:intron | 30.0% | |
| CAATCATGTTATCAAAGCAT+TGG | + | chr3.2:89558035-89558054 | None:intergenic | 30.0% | |
| CTTAGAAGTTCAATAACACA+TGG | + | chr3.2:89555731-89555750 | None:intergenic | 30.0% | |
| GAAACTTATGTTGTACATCT+TGG | - | chr3.2:89556174-89556193 | MS.gene42310:intron | 30.0% | |
| GATAATGAGAAAATTGACAC+AGG | + | chr3.2:89557314-89557333 | None:intergenic | 30.0% | |
| GCCAATCAGATGAAAAAAAA+AGG | + | chr3.2:89555758-89555777 | None:intergenic | 30.0% | |
| TACAATGGTGAAATCCAATA+AGG | + | chr3.2:89555162-89555181 | None:intergenic | 30.0% | |
| TAGTTTGGAGAGTAAAATGT+TGG | - | chr3.2:89554751-89554770 | MS.gene42310:intron | 30.0% | |
| TCATATATAGACACAGAAGA+GGG | + | chr3.2:89555443-89555462 | None:intergenic | 30.0% | |
| TGCACATAACATTGTGAAAT+TGG | - | chr3.2:89558516-89558535 | MS.gene42310:CDS | 30.0% | |
| TGTAAAAAAGTGAACAGAAG+AGG | + | chr3.2:89556486-89556505 | None:intergenic | 30.0% | |
| TGTAATCAGTTTGATTGAGT+TGG | - | chr3.2:89555659-89555678 | MS.gene42310:intron | 30.0% | |
| TGTTTCAGAGAAAAAGATTC+AGG | - | chr3.2:89556714-89556733 | MS.gene42310:intron | 30.0% | |
| TTCGATTTCATGAAATCCAA+GGG | + | chr3.2:89554587-89554606 | None:intergenic | 30.0% | |
| ! | CATGATATTTTCATCCAATG+CGG | - | chr3.2:89556371-89556390 | MS.gene42310:CDS | 30.0% |
| ! | GCTGACTTATAATCAATTCT+TGG | - | chr3.2:89558144-89558163 | MS.gene42310:intron | 30.0% |
| ! | TTTTGCTAGTATGTATTCTG+AGG | - | chr3.2:89556510-89556529 | MS.gene42310:intron | 30.0% |
| !! | ACAAAGTTTGCTAGTTTAGA+AGG | - | chr3.2:89557050-89557069 | MS.gene42310:CDS | 30.0% |
| !! | ACCATTGTAGTGTTTTTATG+TGG | - | chr3.2:89555173-89555192 | MS.gene42310:intron | 30.0% |
| !! | ACCTTTACTTTTGATGGAAT+TGG | - | chr3.2:89554649-89554668 | MS.gene42310:intron | 30.0% |
| !! | AGCATGTCTTTAAAACAACT+AGG | + | chr3.2:89557903-89557922 | None:intergenic | 30.0% |
| !! | CAAAGTTTGCTAGTTTAGAA+GGG | - | chr3.2:89557051-89557070 | MS.gene42310:CDS | 30.0% |
| !! | GGTAACTTTTTCCTTTAAGA+CGG | + | chr3.2:89555884-89555903 | None:intergenic | 30.0% |
| !! | TGCTTAACTCGTATTTTTGT+GGG | + | chr3.2:89555635-89555654 | None:intergenic | 30.0% |
| !! | TTGCTTAACTCGTATTTTTG+TGG | + | chr3.2:89555636-89555655 | None:intergenic | 30.0% |
| AACTGAATCAATTCGGAAGT+GGG | + | chr3.2:89556965-89556984 | None:intergenic | 35.0% | |
| AACTTTGTCTCCATACATCA+TGG | + | chr3.2:89557038-89557057 | None:intergenic | 35.0% | |
| AAGGATAACCATAGAAGCAA+TGG | - | chr3.2:89557188-89557207 | MS.gene42310:CDS | 35.0% | |
| AATAACCAGCTGAACTAATG+AGG | + | chr3.2:89558186-89558205 | None:intergenic | 35.0% | |
| ACAAAAGAACAGTGCAAATG+TGG | + | chr3.2:89557805-89557824 | None:intergenic | 35.0% | |
| ACAACTATAGCATGCAAAGA+TGG | + | chr3.2:89556643-89556662 | None:intergenic | 35.0% | |
| ACATCAATAGAAGCTAGGTA+AGG | + | chr3.2:89556778-89556797 | None:intergenic | 35.0% | |
| ACGATTGCTTAAGTTTATGG+AGG | - | chr3.2:89555201-89555220 | MS.gene42310:intron | 35.0% | |
| AGAAGATAGTGTAGCAAAGA+GGG | - | chr3.2:89556224-89556243 | MS.gene42310:intron | 35.0% | |
| AGTGTTAAATTAATGCTGCG+TGG | - | chr3.2:89554856-89554875 | MS.gene42310:intron | 35.0% | |
| ATGGCAGAACTGAATCAATT+CGG | + | chr3.2:89556972-89556991 | None:intergenic | 35.0% | |
| ATTCTAAATACTGCTGTAGC+TGG | - | chr3.2:89555844-89555863 | MS.gene42310:CDS | 35.0% | |
| CAAGAACATCAATAGAAGCT+AGG | + | chr3.2:89556783-89556802 | None:intergenic | 35.0% | |
| CATATATAGACACAGAAGAG+GGG | + | chr3.2:89555442-89555461 | None:intergenic | 35.0% | |
| CTCATATATAGACACAGAAG+AGG | + | chr3.2:89555444-89555463 | None:intergenic | 35.0% | |
| CTGCAATTCTATGTGACATA+TGG | + | chr3.2:89558615-89558634 | None:intergenic | 35.0% | |
| CTTCGATTTCATGAAATCCA+AGG | + | chr3.2:89554588-89554607 | None:intergenic | 35.0% | |
| CTTTGCATGCTATAGTTGTA+GGG | - | chr3.2:89556644-89556663 | MS.gene42310:intron | 35.0% | |
| GATTCAGTGTGTCTACAAAT+AGG | - | chr3.2:89554936-89554955 | MS.gene42310:intron | 35.0% | |
| GCCAATTCCATCAAAAGTAA+AGG | + | chr3.2:89554653-89554672 | None:intergenic | 35.0% | |
| GCCACATAAAAACACTACAA+TGG | + | chr3.2:89555177-89555196 | None:intergenic | 35.0% | |
| GTATCATGTGCATTTCCTTA+AGG | + | chr3.2:89557418-89557437 | None:intergenic | 35.0% | |
| TAAGGAAACAACAACTGAGT+AGG | + | chr3.2:89557657-89557676 | None:intergenic | 35.0% | |
| TAGGATAACATGGTAGAGAA+AGG | + | chr3.2:89557884-89557903 | None:intergenic | 35.0% | |
| TATCTTCATTTCTTCGCCAA+GGG | + | chr3.2:89557762-89557781 | None:intergenic | 35.0% | |
| TATGTCACATAGAATTGCAG+TGG | - | chr3.2:89558615-89558634 | MS.gene42310:CDS | 35.0% | |
| TCCATAAACTTAAGCAATCG+TGG | + | chr3.2:89555202-89555221 | None:intergenic | 35.0% | |
| TCGATTTCATGAAATCCAAG+GGG | + | chr3.2:89554586-89554605 | None:intergenic | 35.0% | |
| TCTAGGCATTTCATACAGAT+TGG | + | chr3.2:89555694-89555713 | None:intergenic | 35.0% | |
| TCTTTGCATGCTATAGTTGT+AGG | - | chr3.2:89556643-89556662 | MS.gene42310:intron | 35.0% | |
| TGAATCCACCATAAAACCTT+CGG | + | chr3.2:89555916-89555935 | None:intergenic | 35.0% | |
| TGCTCAGACAAAGTTTGAAA+TGG | - | chr3.2:89556678-89556697 | MS.gene42310:intron | 35.0% | |
| TGGAAATAGCAAGGAACTTA+TGG | - | chr3.2:89556194-89556213 | MS.gene42310:intron | 35.0% | |
| TGTACATCTTGGAAATAGCA+AGG | - | chr3.2:89556185-89556204 | MS.gene42310:intron | 35.0% | |
| TGTTAACAAAACCCTTACAG+TGG | - | chr3.2:89556750-89556769 | MS.gene42310:CDS | 35.0% | |
| TGTTCTTGTTCAGAATTCTC+AGG | - | chr3.2:89556795-89556814 | MS.gene42310:CDS | 35.0% | |
| TTATCTTCATTTCTTCGCCA+AGG | + | chr3.2:89557763-89557782 | None:intergenic | 35.0% | |
| TTCACAATGTTATGTGCAAG+AGG | + | chr3.2:89558514-89558533 | None:intergenic | 35.0% | |
| TTGCATGAATCGGAATTGTT+CGG | + | chr3.2:89554488-89554507 | None:intergenic | 35.0% | |
| TTTAAGAAACCGTCCCTTAT+TGG | - | chr3.2:89555145-89555164 | MS.gene42310:intron | 35.0% | |
| TTTAGAAGGGACTTGAAGAT+AGG | - | chr3.2:89557064-89557083 | MS.gene42310:CDS | 35.0% | |
| ! | ACTTTTTGACGTTGCTCTAT+TGG | - | chr3.2:89555518-89555537 | MS.gene42310:intron | 35.0% |
| ! | TCATGGATTGTGCTCATTTA+AGG | - | chr3.2:89555003-89555022 | MS.gene42310:intron | 35.0% |
| ! | TGATGTAAGAGAAGCTTTGA+CGG | - | chr3.2:89555099-89555118 | MS.gene42310:intron | 35.0% |
| ! | TGGTTCTCAAGGAAGTTTTA+CGG | - | chr3.2:89558635-89558654 | MS.gene42310:CDS | 35.0% |
| ! | TGTGGATTCAACTGAGTTTT+AGG | - | chr3.2:89557724-89557743 | MS.gene42310:intron | 35.0% |
| ! | TGTTTGACTTCCATGATGTA+TGG | - | chr3.2:89557025-89557044 | MS.gene42310:CDS | 35.0% |
| !! | AGTATGTATTCTGAGGTCTA+GGG | - | chr3.2:89556517-89556536 | MS.gene42310:intron | 35.0% |
| !! | TAGTATGTATTCTGAGGTCT+AGG | - | chr3.2:89556516-89556535 | MS.gene42310:intron | 35.0% |
| !! | TGTTTCTTGCTGTTTCAACT+TGG | - | chr3.2:89558308-89558327 | MS.gene42310:CDS | 35.0% |
| !!! | GTCTAGGGTTTTTTAAATGC+AGG | - | chr3.2:89556532-89556551 | MS.gene42310:intron | 35.0% |
| AACACATGGATATGAACTGC+AGG | + | chr3.2:89555717-89555736 | None:intergenic | 40.0% | |
| AACATAGTTCACATGTGGCA+TGG | - | chr3.2:89555604-89555623 | MS.gene42310:intron | 40.0% | |
| AACGTAGGAATACCGAATCA+GGG | - | chr3.2:89557929-89557948 | MS.gene42310:intron | 40.0% | |
| ACGAAATGCCATTGCTTCTA+TGG | + | chr3.2:89557199-89557218 | None:intergenic | 40.0% | |
| ATAAAACCTTCGGAAGAACG+AGG | + | chr3.2:89555906-89555925 | None:intergenic | 40.0% | |
| ATAACCTGATCATGTTCAGC+AGG | + | chr3.2:89554728-89554747 | None:intergenic | 40.0% | |
| ATCATAGCACCTGCAACAAA+AGG | + | chr3.2:89555985-89556004 | None:intergenic | 40.0% | |
| ATGTTCAGCAGGATACTGAT+TGG | + | chr3.2:89554717-89554736 | None:intergenic | 40.0% | |
| CAACTTGGCTACTCCAATTT+CGG | - | chr3.2:89558323-89558342 | MS.gene42310:CDS | 40.0% | |
| CAAGGCAAATTGACATCGTT+TGG | - | chr3.2:89556409-89556428 | MS.gene42310:CDS | 40.0% | |
| CACATATAACTGCAGAGTAC+TGG | - | chr3.2:89556010-89556029 | MS.gene42310:intron | 40.0% | |
| CAGAAGATAGTGTAGCAAAG+AGG | - | chr3.2:89556223-89556242 | MS.gene42310:intron | 40.0% | |
| GAACTGAATCAATTCGGAAG+TGG | + | chr3.2:89556966-89556985 | None:intergenic | 40.0% | |
| GAGAGTAAAATGTTGGACAG+AGG | - | chr3.2:89554758-89554777 | MS.gene42310:intron | 40.0% | |
| GAGCTGCAAACTTTCATGAA+AGG | + | chr3.2:89556596-89556615 | None:intergenic | 40.0% | |
| GATAACATGGTAGAGAAAGG+TGG | + | chr3.2:89557881-89557900 | None:intergenic | 40.0% | |
| GCCACGATTGCTTAAGTTTA+TGG | - | chr3.2:89555198-89555217 | MS.gene42310:intron | 40.0% | |
| GCTCTGTTCCATAATCAACT+TGG | + | chr3.2:89556843-89556862 | None:intergenic | 40.0% | |
| GTTTCCTTATGCATGCCAAT+TGG | - | chr3.2:89557668-89557687 | MS.gene42310:intron | 40.0% | |
| TAAAACCTTCGGAAGAACGA+GGG | + | chr3.2:89555905-89555924 | None:intergenic | 40.0% | |
| TACAGCTCTTAAAGCTGATC+TGG | - | chr3.2:89555819-89555838 | MS.gene42310:intron | 40.0% | |
| TACAGTCACACAGAACACAT+AGG | + | chr3.2:89556096-89556115 | None:intergenic | 40.0% | |
| TAGAATTGCAGTGGTTCTCA+AGG | - | chr3.2:89558624-89558643 | MS.gene42310:CDS | 40.0% | |
| TCATAGCACCTGCAACAAAA+GGG | + | chr3.2:89555984-89556003 | None:intergenic | 40.0% | |
| TCCACATGTGTAGCAAATCA+TGG | - | chr3.2:89554986-89555005 | MS.gene42310:intron | 40.0% | |
| TGAAAGTTTGCAGCTCATTC+AGG | - | chr3.2:89556600-89556619 | MS.gene42310:intron | 40.0% | |
| TGGCTAGAAATCACACCTTA+AGG | - | chr3.2:89557400-89557419 | MS.gene42310:intron | 40.0% | |
| TGGTATGAATCGAAGCACAT+TGG | + | chr3.2:89557147-89557166 | None:intergenic | 40.0% | |
| TGGTGAAATCCAATAAGGGA+CGG | + | chr3.2:89555157-89555176 | None:intergenic | 40.0% | |
| TTAAATGCAGGTGTTTCACG+TGG | - | chr3.2:89556544-89556563 | MS.gene42310:intron | 40.0% | |
| TTCAGTTCTGCCATCTTCAT+TGG | - | chr3.2:89556978-89556997 | MS.gene42310:intron | 40.0% | |
| ! | AACTTTCATGAAAGGCACGA+AGG | + | chr3.2:89556588-89556607 | None:intergenic | 40.0% |
| ! | GAAATCGAAGCTAGTTCTCA+TGG | - | chr3.2:89554598-89554617 | MS.gene42310:CDS | 40.0% |
| ! | GAAGTGGGTGCAATATGTTT+TGG | + | chr3.2:89556950-89556969 | None:intergenic | 40.0% |
| ! | GAATTGGCGTTTTTGTTGAG+AGG | - | chr3.2:89554665-89554684 | MS.gene42310:intron | 40.0% |
| ! | GATGTAAGAGAAGCTTTGAC+GGG | - | chr3.2:89555100-89555119 | MS.gene42310:intron | 40.0% |
| ! | TAACGGTAGAATTTGGTGAG+AGG | - | chr3.2:89555057-89555076 | MS.gene42310:intron | 40.0% |
| ! | TAGGCACTTGAATTTTCCCT+TGG | - | chr3.2:89557743-89557762 | MS.gene42310:intron | 40.0% |
| ! | TCGTTCTTCCGAAGGTTTTA+TGG | - | chr3.2:89555905-89555924 | MS.gene42310:intron | 40.0% |
| ! | TCTCAAGGAAGTTTTACGGA+AGG | - | chr3.2:89558639-89558658 | MS.gene42310:CDS | 40.0% |
| !! | CTGCGTGGAAATGTTTTAAG+AGG | - | chr3.2:89554871-89554890 | MS.gene42310:intron | 40.0% |
| !! | CTTTGTGGTGTTGCATGAAT+CGG | + | chr3.2:89554498-89554517 | None:intergenic | 40.0% |
| !! | GCTCTATTGGAGTTGATAGT+TGG | - | chr3.2:89555531-89555550 | MS.gene42310:intron | 40.0% |
| !! | GTGTTGGTTCTGATGTTGTT+TGG | - | chr3.2:89554687-89554706 | MS.gene42310:intron | 40.0% |
| !! | TAGCATTGGCGAAGAAAAGA+TGG | - | chr3.2:89554405-89554424 | MS.gene42310:CDS | 40.0% |
| !! | TCATCTGATTGGCTTCTGAT+AGG | - | chr3.2:89555765-89555784 | MS.gene42310:intron | 40.0% |
| !! | TCCATGATTTGCTACACATG+TGG | + | chr3.2:89554990-89555009 | None:intergenic | 40.0% |
| !! | TGGTGGACCTTTACTTTTGA+TGG | - | chr3.2:89554643-89554662 | MS.gene42310:intron | 40.0% |
| !! | TTCTTCCGAAGGTTTTATGG+TGG | - | chr3.2:89555908-89555927 | MS.gene42310:intron | 40.0% |
| !! | TTTTTCGACAGGACTGATAG+TGG | + | chr3.2:89557553-89557572 | None:intergenic | 40.0% |
| AAAGGGAAGGTCATATCGAC+AGG | + | chr3.2:89557263-89557282 | None:intergenic | 45.0% | |
| AACATACCCTAAACTCTCCC+TGG | + | chr3.2:89556046-89556065 | None:intergenic | 45.0% | |
| AACATGGTAGAGAAAGGTGG+AGG | + | chr3.2:89557878-89557897 | None:intergenic | 45.0% | |
| AACCATGTCATGTACCGCAT+TGG | + | chr3.2:89556388-89556407 | None:intergenic | 45.0% | |
| AATAGGACCAGGGAGAGTTT+AGG | - | chr3.2:89556036-89556055 | MS.gene42310:intron | 45.0% | |
| AATGTTGGACAGAGGAGTTC+AGG | - | chr3.2:89554766-89554785 | MS.gene42310:intron | 45.0% | |
| ACATGGTAGAGAAAGGTGGA+GGG | + | chr3.2:89557877-89557896 | None:intergenic | 45.0% | |
| ACGTAGGAATACCGAATCAG+GGG | - | chr3.2:89557930-89557949 | MS.gene42310:intron | 45.0% | |
| ACTGTGGAGATCGTGGTTAA+TGG | - | chr3.2:89558445-89558464 | MS.gene42310:CDS | 45.0% | |
| AGAGTCCTCATTAGTTCAGC+TGG | - | chr3.2:89558178-89558197 | MS.gene42310:intron | 45.0% | |
| AGGCTGACTATGGGAAAGAA+AGG | - | chr3.2:89558556-89558575 | MS.gene42310:CDS | 45.0% | |
| AGTTGGCTGTCAGATGATAC+AGG | - | chr3.2:89558076-89558095 | MS.gene42310:intron | 45.0% | |
| ATACTGCTGTAGCTGGAAAG+TGG | - | chr3.2:89555851-89555870 | MS.gene42310:CDS | 45.0% | |
| ATAGGACCAGGGAGAGTTTA+GGG | - | chr3.2:89556037-89556056 | MS.gene42310:intron | 45.0% | |
| ATCCAATGCGGTACATGACA+TGG | - | chr3.2:89556383-89556402 | MS.gene42310:CDS | 45.0% | |
| ATCGTGGTTAATGGGACAAC+CGG | - | chr3.2:89558454-89558473 | MS.gene42310:CDS | 45.0% | |
| ATTCGGTATTCCTACGTTCG+TGG | + | chr3.2:89557927-89557946 | None:intergenic | 45.0% | |
| CAAAGACCTTCGAAGCACAA+CGG | - | chr3.2:89554513-89554532 | MS.gene42310:CDS | 45.0% | |
| CACGAACTATCTCTTTCTGG+TGG | - | chr3.2:89554626-89554645 | MS.gene42310:intron | 45.0% | |
| CAGGGGAGACATGTATGTTT+CGG | - | chr3.2:89557947-89557966 | MS.gene42310:intron | 45.0% | |
| CAGGTGTTTCACGTGGTAAA+GGG | - | chr3.2:89556551-89556570 | MS.gene42310:intron | 45.0% | |
| CATACATGTCTCCCCTGATT+CGG | + | chr3.2:89557944-89557963 | None:intergenic | 45.0% | |
| CTGTGGAGATCGTGGTTAAT+GGG | - | chr3.2:89558446-89558465 | MS.gene42310:CDS | 45.0% | |
| CTTCGATTCATACCAGTCAC+GGG | - | chr3.2:89557152-89557171 | MS.gene42310:CDS | 45.0% | |
| GAAAGGCCAACCAATGAAGA+TGG | + | chr3.2:89556991-89557010 | None:intergenic | 45.0% | |
| GAACGTAGGAATACCGAATC+AGG | - | chr3.2:89557928-89557947 | MS.gene42310:intron | 45.0% | |
| GAGAGTGAAAGAGAGGTTTC+TGG | - | chr3.2:89558585-89558604 | MS.gene42310:CDS | 45.0% | |
| GAGCATGTTAGGGAATCTCT+TGG | - | chr3.2:89556255-89556274 | MS.gene42310:CDS | 45.0% | |
| GCTTCGATTCATACCAGTCA+CGG | - | chr3.2:89557151-89557170 | MS.gene42310:CDS | 45.0% | |
| GGCTGACTATGGGAAAGAAA+GGG | - | chr3.2:89558557-89558576 | MS.gene42310:CDS | 45.0% | |
| GGTATGAGAGAGTGAAAGAG+AGG | - | chr3.2:89558578-89558597 | MS.gene42310:CDS | 45.0% | |
| GGTTCTTCGTGAGCATGTTA+GGG | - | chr3.2:89556245-89556264 | MS.gene42310:intron | 45.0% | |
| GTACTGGAAGAATAGGACCA+GGG | - | chr3.2:89556026-89556045 | MS.gene42310:intron | 45.0% | |
| GTAGCCAATTGGCATGCATA+AGG | + | chr3.2:89557675-89557694 | None:intergenic | 45.0% | |
| GTATCCTGCTGAACATGATC+AGG | - | chr3.2:89554721-89554740 | MS.gene42310:intron | 45.0% | |
| GTTCTGCCATCTTCATTGGT+TGG | - | chr3.2:89556982-89557001 | MS.gene42310:intron | 45.0% | |
| GTTGAGAAGAGGCTGACTAT+GGG | - | chr3.2:89558547-89558566 | MS.gene42310:CDS | 45.0% | |
| TAGGTAAGGAGCCACTGTAA+GGG | + | chr3.2:89556764-89556783 | None:intergenic | 45.0% | |
| TCGCACGAACTATCTCTTTC+TGG | - | chr3.2:89554623-89554642 | MS.gene42310:intron | 45.0% | |
| TGGATATGAACTGCAGGTCT+AGG | + | chr3.2:89555711-89555730 | None:intergenic | 45.0% | |
| TGGCAAGTCATGTTGAGAAG+AGG | - | chr3.2:89558536-89558555 | MS.gene42310:CDS | 45.0% | |
| TGTTGAGAAGAGGCTGACTA+TGG | - | chr3.2:89558546-89558565 | MS.gene42310:CDS | 45.0% | |
| TTCATGAAATCCAAGGGGCT+TGG | + | chr3.2:89554581-89554600 | None:intergenic | 45.0% | |
| TTCGATTCATACCAGTCACG+GGG | - | chr3.2:89557153-89557172 | MS.gene42310:CDS | 45.0% | |
| TTGTGCTTCGAAGGTCTTTG+TGG | + | chr3.2:89554513-89554532 | None:intergenic | 45.0% | |
| ! | ACAGCCTTTTCACCTTTTGC+AGG | + | chr3.2:89555796-89555815 | None:intergenic | 45.0% |
| ! | AGGAAGTTTTACGGAAGGCA+AGG | - | chr3.2:89558644-89558663 | MS.gene42310:CDS | 45.0% |
| ! | AGTACTGGAAGAATAGGACC+AGG | - | chr3.2:89556025-89556044 | MS.gene42310:intron | 45.0% |
| ! | CTTTTGGTCAAGTAGCCTAG+TGG | - | chr3.2:89557380-89557399 | MS.gene42310:intron | 45.0% |
| ! | GGTGGATTCATGAAATGCGA+GGG | - | chr3.2:89555926-89555945 | MS.gene42310:intron | 45.0% |
| !! | AGGTGTGATTTCTAGCCACT+AGG | + | chr3.2:89557398-89557417 | None:intergenic | 45.0% |
| !! | CTGCAGAGTACTGGAAGAAT+AGG | - | chr3.2:89556019-89556038 | MS.gene42310:intron | 45.0% |
| !! | GCGAGGGCATTATTTCAAAG+AGG | - | chr3.2:89555942-89555961 | MS.gene42310:intron | 45.0% |
| !! | GCGTTTTTGTTGAGAGGTGT+TGG | - | chr3.2:89554671-89554690 | MS.gene42310:intron | 45.0% |
| !! | TGGTGGATTCATGAAATGCG+AGG | - | chr3.2:89555925-89555944 | MS.gene42310:intron | 45.0% |
| !!! | ATTTATTATATATATTCTTT+TGG | - | chr3.2:89557364-89557383 | MS.gene42310:intron | 5.0% |
| AAGGTGGAGGGTTGAGCATA+TGG | + | chr3.2:89557865-89557884 | None:intergenic | 50.0% | |
| ACCAGATGGTGCATTTCCGA+CGG | + | chr3.2:89554558-89554577 | None:intergenic | 50.0% | |
| AGACATGCTTCCACGAACGT+AGG | - | chr3.2:89557914-89557933 | MS.gene42310:intron | 50.0% | |
| AGGTGGAGGGTTGAGCATAT+GGG | + | chr3.2:89557864-89557883 | None:intergenic | 50.0% | |
| AGTGAAGGACGTACCAGTAC+AGG | + | chr3.2:89557225-89557244 | None:intergenic | 50.0% | |
| AGTTACCCTCGTTCTTCCGA+AGG | - | chr3.2:89555897-89555916 | MS.gene42310:intron | 50.0% | |
| ATAGACACAGAAGAGGGGCA+AGG | + | chr3.2:89555437-89555456 | None:intergenic | 50.0% | |
| CAAAACATTCTCCCCGTGAC+TGG | + | chr3.2:89557167-89557186 | None:intergenic | 50.0% | |
| CCTGCCTGCAAAAGGTGAAA+AGG | - | chr3.2:89555789-89555808 | MS.gene42310:intron | 50.0% | |
| CGGTACATGACATGGTTGCA+AGG | - | chr3.2:89556391-89556410 | MS.gene42310:CDS | 50.0% | |
| CTAGGTAAGGAGCCACTGTA+AGG | + | chr3.2:89556765-89556784 | None:intergenic | 50.0% | |
| CTGATTCCGTTGTGCTTCGA+AGG | + | chr3.2:89554522-89554541 | None:intergenic | 50.0% | |
| GCAGGTGTTTCACGTGGTAA+AGG | - | chr3.2:89556550-89556569 | MS.gene42310:intron | 50.0% | |
| GGGTTCTTCGTGAGCATGTT+AGG | - | chr3.2:89556244-89556263 | MS.gene42310:intron | 50.0% | |
| TAGACACAGAAGAGGGGCAA+GGG | + | chr3.2:89555436-89555455 | None:intergenic | 50.0% | |
| TAGCACCTGCAACAAAAGGG+AGG | + | chr3.2:89555981-89556000 | None:intergenic | 50.0% | |
| TGATAGGTCCTGCCTGCAAA+AGG | - | chr3.2:89555781-89555800 | MS.gene42310:intron | 50.0% | |
| TTTGCTGCATCCTGAAGGCA+AGG | - | chr3.2:89558477-89558496 | MS.gene42310:CDS | 50.0% | |
| ! | AAGCACCTCCCTTTTGTTGC+AGG | - | chr3.2:89555973-89555992 | MS.gene42310:intron | 50.0% |
| ! | AGAGGTATAGTCGCAGAGGT+AGG | + | chr3.2:89555336-89555355 | None:intergenic | 50.0% |
| ! | CAGTCACGGGGAGAATGTTT+TGG | - | chr3.2:89557165-89557184 | MS.gene42310:CDS | 50.0% |
| ! | CCTTTTCACCTTTTGCAGGC+AGG | + | chr3.2:89555792-89555811 | None:intergenic | 50.0% |
| ! | GGCGAAGCATTCAGTAGCAT+TGG | - | chr3.2:89554391-89554410 | MS.gene42310:CDS | 50.0% |
| ! | GGTAGAATTTGGTGAGAGGC+TGG | - | chr3.2:89555061-89555080 | MS.gene42310:intron | 50.0% |
| ! | TACACAGGGGTGTAGCCAAT+TGG | + | chr3.2:89557686-89557705 | None:intergenic | 50.0% |
| !! | CACGGGGAGAATGTTTTGGA+AGG | - | chr3.2:89557169-89557188 | MS.gene42310:CDS | 50.0% |
| CAGATTCACCCCTCTTCCGT+CGG | - | chr3.2:89554539-89554558 | MS.gene42310:CDS | 55.0% | |
| CAGTTGCTCTGTAGTCGCAG+AGG | + | chr3.2:89555354-89555373 | None:intergenic | 55.0% | |
| CTGCATCCTGAAGGCAAGGA+TGG | - | chr3.2:89558481-89558500 | MS.gene42310:CDS | 55.0% | |
| GCCTTCAGGATGCAGCAAAC+CGG | + | chr3.2:89558476-89558495 | None:intergenic | 55.0% | |
| GGAGGGTTGAGCATATGGGA+AGG | + | chr3.2:89557860-89557879 | None:intergenic | 55.0% | |
| GGCATTTCGTCTGCCTGTAC+TGG | - | chr3.2:89557209-89557228 | MS.gene42310:CDS | 55.0% | |
| GGTGCATTTCCGACGGAAGA+GGG | + | chr3.2:89554551-89554570 | None:intergenic | 55.0% | |
| GTCACACCATCCTTGCCTTC+AGG | + | chr3.2:89558490-89558509 | None:intergenic | 55.0% | |
| GTGCATTTCCGACGGAAGAG+GGG | + | chr3.2:89554550-89554569 | None:intergenic | 55.0% | |
| GTGGCTGGATGCCGTCTTAA+AGG | - | chr3.2:89555870-89555889 | MS.gene42310:CDS | 55.0% | |
| TCCGTCGGAAATGCACCATC+TGG | - | chr3.2:89554554-89554573 | MS.gene42310:CDS | 55.0% | |
| TGCTGTAGCTGGAAAGTGGC+TGG | - | chr3.2:89555855-89555874 | MS.gene42310:CDS | 55.0% | |
| TGGTGCATTTCCGACGGAAG+AGG | + | chr3.2:89554552-89554571 | None:intergenic | 55.0% | |
| ! | TCGCAGAGGTATAGTCGCAG+AGG | + | chr3.2:89555340-89555359 | None:intergenic | 55.0% |
| !! | ACCGGTTTGCTGCATCCTGA+AGG | - | chr3.2:89558472-89558491 | MS.gene42310:CDS | 55.0% |
| ACAGAAGAGGGGCAAGGGAC+GGG | + | chr3.2:89555431-89555450 | None:intergenic | 60.0% | |
| ACCATCTGGTCCAAGCCCCT+TGG | - | chr3.2:89554568-89554587 | MS.gene42310:CDS | 60.0% | |
| CACAGAAGAGGGGCAAGGGA+CGG | + | chr3.2:89555432-89555451 | None:intergenic | 60.0% | |
| GTCGCAGAGGTAGGCACAAG+CGG | + | chr3.2:89555327-89555346 | None:intergenic | 60.0% | |
| TCCAAGGGGCTTGGACCAGA+TGG | + | chr3.2:89554572-89554591 | None:intergenic | 60.0% | |
| !! | TGGAGGCACTGTGGAGATCG+TGG | - | chr3.2:89558438-89558457 | MS.gene42310:CDS | 60.0% |
| !!! | CTTTTGCAGGGCACTGCAGC+TGG | - | chr3.2:89558418-89558437 | MS.gene42310:CDS | 60.0% |
| AGAAGAGGGGCAAGGGACGG+GGG | + | chr3.2:89555429-89555448 | None:intergenic | 65.0% | |
| CAGAAGAGGGGCAAGGGACG+GGG | + | chr3.2:89555430-89555449 | None:intergenic | 65.0% | |
| !! | CACTGCAGCTGGAGGCACTG+TGG | - | chr3.2:89558429-89558448 | MS.gene42310:CDS | 65.0% |
| !! | TTGCAGGGCACTGCAGCTGG+AGG | - | chr3.2:89558421-89558440 | MS.gene42310:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 89554389 | 89558675 | 89554389 | ID=MS.gene42310 |
| chr3.2 | mRNA | 89554389 | 89558675 | 89554389 | ID=MS.gene42310.t1;Parent=MS.gene42310 |
| chr3.2 | exon | 89558277 | 89558675 | 89558277 | ID=MS.gene42310.t1.exon1;Parent=MS.gene42310.t1 |
| chr3.2 | CDS | 89558277 | 89558675 | 89558277 | ID=cds.MS.gene42310.t1;Parent=MS.gene42310.t1 |
| chr3.2 | exon | 89557006 | 89557277 | 89557006 | ID=MS.gene42310.t1.exon2;Parent=MS.gene42310.t1 |
| chr3.2 | CDS | 89557006 | 89557277 | 89557006 | ID=cds.MS.gene42310.t1;Parent=MS.gene42310.t1 |
| chr3.2 | exon | 89556749 | 89556903 | 89556749 | ID=MS.gene42310.t1.exon3;Parent=MS.gene42310.t1 |
| chr3.2 | CDS | 89556749 | 89556903 | 89556749 | ID=cds.MS.gene42310.t1;Parent=MS.gene42310.t1 |
| chr3.2 | exon | 89556248 | 89556510 | 89556248 | ID=MS.gene42310.t1.exon4;Parent=MS.gene42310.t1 |
| chr3.2 | CDS | 89556248 | 89556510 | 89556248 | ID=cds.MS.gene42310.t1;Parent=MS.gene42310.t1 |
| chr3.2 | exon | 89555834 | 89555896 | 89555834 | ID=MS.gene42310.t1.exon5;Parent=MS.gene42310.t1 |
| chr3.2 | CDS | 89555834 | 89555896 | 89555834 | ID=cds.MS.gene42310.t1;Parent=MS.gene42310.t1 |
| chr3.2 | exon | 89554389 | 89554637 | 89554389 | ID=MS.gene42310.t1.exon6;Parent=MS.gene42310.t1 |
| chr3.2 | CDS | 89554389 | 89554637 | 89554389 | ID=cds.MS.gene42310.t1;Parent=MS.gene42310.t1 |
| Gene Sequence |
| Protein sequence |
