AlfalfaGEDB | MS.gene46197

M. sativa cultivar XinJiangDaYe / MS.gene46197

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46197.t1	XP_013456276.1	77.2	320	36	6	1	308	1	295	5.80E-120	440.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46197.t1	Q9T072	32.6	313	174	11	17	308	8	304	5.3e-21	103.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46197.t1	A0A072UKT5	77.2	320	36	6	1	308	1	295	4.2e-120	440.7

TFs/TRs:

Gene ID	Type	Classification
MS.gene46197.t1	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene46197	-0.808278	3.35E-50	-1.69E-46
MS.gene049222	MS.gene46197	-0.816689	4.86E-52	-1.69E-46
MS.gene04932	MS.gene46197	0.839519	1.51E-57	-1.69E-46
MS.gene049549	MS.gene46197	0.851754	7.22E-61	-1.69E-46
MS.gene049609	MS.gene46197	-0.805448	1.33E-49	-1.69E-46
MS.gene050612	MS.gene46197	-0.804057	2.59E-49	-1.69E-46
MS.gene050647	MS.gene46197	0.808401	3.15E-50	-1.69E-46
MS.gene050772	MS.gene46197	-0.803294	3.73E-49	-1.69E-46
MS.gene051131	MS.gene46197	0.830453	2.91E-55	-1.69E-46
MS.gene051138	MS.gene46197	0.807611	4.64E-50	-1.69E-46
MS.gene052211	MS.gene46197	0.823869	1.10E-53	-1.69E-46
MS.gene05240	MS.gene46197	0.858939	5.84E-63	-1.69E-46
MS.gene05244	MS.gene46197	0.84805	7.85E-60	-1.69E-46
MS.gene052501	MS.gene46197	-0.804668	1.93E-49	-1.69E-46
MS.gene052503	MS.gene46197	-0.818418	1.98E-52	-1.69E-46
MS.gene052606	MS.gene46197	0.83934	1.68E-57	-1.69E-46
MS.gene052702	MS.gene46197	0.850994	1.18E-60	-1.69E-46
MS.gene052705	MS.gene46197	0.839234	1.79E-57	-1.69E-46
MS.gene052706	MS.gene46197	0.81547	9.09E-52	-1.69E-46
MS.gene052823	MS.gene46197	-0.822194	2.70E-53	-1.69E-46
MS.gene052825	MS.gene46197	-0.813742	2.19E-51	-1.69E-46
MS.gene053203	MS.gene46197	-0.803428	3.50E-49	-1.69E-46
MS.gene053406	MS.gene46197	0.805338	1.40E-49	-1.69E-46
MS.gene053887	MS.gene46197	0.810939	8.98E-51	-1.69E-46
MS.gene054146	MS.gene46197	0.807686	4.48E-50	-1.69E-46
MS.gene054181	MS.gene46197	0.832356	9.91E-56	-1.69E-46
MS.gene054277	MS.gene46197	0.83397	3.93E-56	-1.69E-46
MS.gene054706	MS.gene46197	0.822297	2.55E-53	-1.69E-46
MS.gene05470	MS.gene46197	-0.820529	6.54E-53	-1.69E-46
MS.gene054742	MS.gene46197	0.859373	4.33E-63	-1.69E-46
MS.gene05483	MS.gene46197	0.822399	2.42E-53	-1.69E-46
MS.gene054884	MS.gene46197	0.832049	1.18E-55	-1.69E-46
MS.gene055206	MS.gene46197	-0.804935	1.70E-49	-1.69E-46
MS.gene055240	MS.gene46197	0.807687	4.48E-50	-1.69E-46
MS.gene055502	MS.gene46197	-0.816361	5.75E-52	-1.69E-46
MS.gene055577	MS.gene46197	-0.803261	3.79E-49	-1.69E-46
MS.gene05589	MS.gene46197	-0.809044	2.30E-50	-1.69E-46
MS.gene056218	MS.gene46197	0.80573	1.16E-49	-1.69E-46
MS.gene056224	MS.gene46197	0.80948	1.85E-50	-1.69E-46
MS.gene056359	MS.gene46197	0.814854	1.25E-51	-1.69E-46
MS.gene056504	MS.gene46197	-0.805292	1.43E-49	-1.69E-46
MS.gene056590	MS.gene46197	0.997189	2.57E-238	-1.69E-46
MS.gene056591	MS.gene46197	0.997656	1.36E-246	-1.69E-46
MS.gene056688	MS.gene46197	0.820881	5.43E-53	-1.69E-46
MS.gene056694	MS.gene46197	0.832435	9.47E-56	-1.69E-46
MS.gene056697	MS.gene46197	0.833635	4.76E-56	-1.69E-46
MS.gene056748	MS.gene46197	0.828309	9.66E-55	-1.69E-46
MS.gene056856	MS.gene46197	0.844254	8.47E-59	-1.69E-46
MS.gene056920	MS.gene46197	0.835115	2.02E-56	-1.69E-46
MS.gene057261	MS.gene46197	0.822481	2.31E-53	-1.69E-46
MS.gene057544	MS.gene46197	0.861868	7.58E-64	-1.69E-46
MS.gene057547	MS.gene46197	0.802519	5.40E-49	-1.69E-46
MS.gene057548	MS.gene46197	0.806073	9.82E-50	-1.69E-46
MS.gene057658	MS.gene46197	-0.805703	1.17E-49	-1.69E-46
MS.gene057768	MS.gene46197	0.815299	9.93E-52	-1.69E-46
MS.gene058093	MS.gene46197	0.800866	1.18E-48	-1.69E-46
MS.gene058109	MS.gene46197	0.806688	7.28E-50	-1.69E-46
MS.gene058158	MS.gene46197	0.801231	9.93E-49	-1.69E-46
MS.gene058381	MS.gene46197	0.805442	1.33E-49	-1.69E-46
MS.gene058419	MS.gene46197	-0.816855	4.46E-52	-1.69E-46
MS.gene058544	MS.gene46197	-0.815123	1.09E-51	-1.69E-46
MS.gene058603	MS.gene46197	0.83516	1.97E-56	-1.69E-46
MS.gene058838	MS.gene46197	-0.820955	5.22E-53	-1.69E-46
MS.gene059023	MS.gene46197	-0.808972	2.38E-50	-1.69E-46
MS.gene059315	MS.gene46197	0.819839	9.41E-53	-1.69E-46
MS.gene059402	MS.gene46197	0.812705	3.71E-51	-1.69E-46
MS.gene059677	MS.gene46197	-0.813411	2.59E-51	-1.69E-46
MS.gene059953	MS.gene46197	0.84207	3.24E-58	-1.69E-46
MS.gene059955	MS.gene46197	0.835705	1.44E-56	-1.69E-46
MS.gene060087	MS.gene46197	0.843637	1.24E-58	-1.69E-46
MS.gene060405	MS.gene46197	0.812183	4.82E-51	-1.69E-46
MS.gene060762	MS.gene46197	-0.818696	1.71E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46197.t1	MTR_4g066460	81.620	321	28	6	1	308	1	303	1.14e-175	489
MS.gene46197.t1	MTR_4g066380	82.390	318	28	4	1	308	1	300	5.04e-175	487
MS.gene46197.t1	MTR_4g067010	78.438	320	32	6	1	308	1	295	7.28e-172	479
MS.gene46197.t1	MTR_6g047570	63.720	328	81	10	1	308	1	310	3.03e-128	369
MS.gene46197.t1	MTR_0011s0260	59.026	349	87	7	1	308	1	334	1.70e-117	342
MS.gene46197.t1	MTR_0011s0210	58.739	349	88	7	1	308	1	334	8.93e-116	338
MS.gene46197.t1	MTR_0250s0040	55.219	297	64	7	23	308	1	239	2.61e-96	285
MS.gene46197.t1	MTR_0246s0020	50.418	359	121	8	1	308	1	353	3.90e-90	274
MS.gene46197.t1	MTR_0246s0020	50.418	359	121	8	1	308	1	353	6.12e-90	273
MS.gene46197.t1	MTR_6g047550	57.317	246	63	8	1	222	1	228	5.98e-74	228
MS.gene46197.t1	MTR_4g098035	45.161	341	129	11	1	308	1	316	8.96e-73	228
MS.gene46197.t1	MTR_0246s0050	43.887	319	122	10	22	308	2	295	3.59e-65	207
MS.gene46197.t1	MTR_5g014520	43.648	307	140	10	17	308	20	308	9.28e-56	184
MS.gene46197.t1	MTR_5g014560	46.377	207	83	7	117	308	89	282	4.95e-42	147
MS.gene46197.t1	MTR_5g014600	34.954	329	159	9	13	308	7	313	1.46e-37	136
MS.gene46197.t1	MTR_4g097920	36.626	243	122	6	93	308	52	289	7.35e-36	131
MS.gene46197.t1	MTR_4g097920	36.626	243	122	6	93	308	67	304	1.13e-35	131
MS.gene46197.t1	MTR_8g009020	38.009	221	112	4	105	308	89	301	4.13e-35	130
MS.gene46197.t1	MTR_4g097940	35.802	243	124	6	93	308	67	304	6.84e-34	126
MS.gene46197.t1	MTR_2g010450	45.342	161	75	2	159	308	171	329	9.88e-34	127
MS.gene46197.t1	MTR_4g092700	41.304	184	86	3	141	308	132	309	1.26e-33	126
MS.gene46197.t1	MTR_4g009540	41.209	182	86	6	148	308	128	309	3.26e-33	124
MS.gene46197.t1	MTR_2g104490	35.417	240	135	5	78	308	58	286	6.48e-33	124
MS.gene46197.t1	MTR_2g104490	36.100	241	132	7	78	308	58	286	7.04e-33	123
MS.gene46197.t1	MTR_4g009540	41.209	182	86	6	148	308	128	309	7.22e-33	124
MS.gene46197.t1	MTR_8g069740	42.690	171	82	5	153	308	96	265	8.30e-33	122
MS.gene46197.t1	MTR_4g097950	47.531	162	68	4	164	308	67	228	1.15e-32	121
MS.gene46197.t1	MTR_5g014640	32.422	256	127	6	81	308	65	302	1.93e-32	122
MS.gene46197.t1	MTR_4g009110	36.638	232	111	7	98	308	112	328	2.69e-32	122
MS.gene46197.t1	MTR_2g104550	37.037	216	117	4	105	308	82	290	2.69e-32	122
MS.gene46197.t1	MTR_8g009010	36.098	205	99	3	105	308	77	250	7.41e-30	115
MS.gene46197.t1	MTR_2g104650	42.857	168	80	5	156	308	81	247	1.03e-28	111
MS.gene46197.t1	MTR_7g080780	39.247	186	105	4	126	308	127	307	1.29e-28	112
MS.gene46197.t1	MTR_7g080780	39.247	186	105	4	126	308	114	294	1.32e-28	112
MS.gene46197.t1	MTR_2g104560	38.323	167	91	5	153	308	38	203	1.61e-26	104
MS.gene46197.t1	MTR_2g104530	37.805	164	92	4	153	308	91	252	5.78e-24	99.0
MS.gene46197.t1	MTR_2g104500	31.222	221	144	5	95	308	31	250	4.16e-21	91.3
MS.gene46197.t1	MTR_2g104590	36.145	166	72	6	156	308	58	202	4.55e-20	87.4
MS.gene46197.t1	MTR_5g014550	44.444	126	52	3	197	308	54	175	8.38e-20	85.9
MS.gene46197.t1	MTR_4g009510	35.664	143	85	5	169	308	45	183	9.62e-17	77.8
MS.gene46197.t1	MTR_8g067280	29.940	167	86	2	158	293	443	609	1.30e-15	77.8
MS.gene46197.t1	MTR_7g451650	36.000	125	68	2	190	308	57	175	1.89e-15	73.6
MS.gene46197.t1	MTR_7g451650	36.000	125	68	2	190	308	57	175	1.95e-15	73.9
MS.gene46197.t1	MTR_1g072320	31.944	144	76	3	167	290	470	611	5.12e-15	75.9
MS.gene46197.t1	MTR_4g009420	37.815	119	66	2	190	308	65	175	1.22e-14	71.6
MS.gene46197.t1	MTR_4g009420	37.815	119	66	2	190	308	65	175	2.02e-14	71.2
MS.gene46197.t1	MTR_8g024770	29.333	150	77	4	141	266	248	392	3.79e-14	72.8
MS.gene46197.t1	MTR_8g024790	29.630	162	99	4	139	286	263	423	7.25e-14	72.0
MS.gene46197.t1	MTR_5g030430	30.539	167	91	4	152	293	474	640	9.61e-14	72.0
MS.gene46197.t1	MTR_7g050350	34.454	119	66	2	196	308	1	113	3.06e-13	66.2
MS.gene46197.t1	MTR_7g451650	34.454	119	66	2	196	308	1	113	3.06e-13	66.2
MS.gene46197.t1	MTR_7g117670	53.226	62	25	1	163	220	394	455	7.74e-13	69.3
MS.gene46197.t1	MTR_3g498695	29.677	155	89	2	169	303	300	454	1.14e-12	68.6
MS.gene46197.t1	MTR_3g498695	29.677	155	89	2	169	303	300	454	1.25e-12	68.6
MS.gene46197.t1	MTR_3g030700	30.968	155	92	3	169	308	198	352	2.10e-12	67.4
MS.gene46197.t1	MTR_7g096350	36.082	97	52	1	134	220	312	408	3.10e-12	67.4
MS.gene46197.t1	MTR_8g027495	46.479	71	38	0	167	237	458	528	3.24e-12	67.4
MS.gene46197.t1	MTR_8g064700	26.036	169	102	4	157	306	234	398	5.53e-12	66.2
MS.gene46197.t1	MTR_3g104100	27.742	155	92	3	169	303	197	351	3.51e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46197.t1	AT4G37850	43.889	180	80	7	147	308	128	304	3.34e-33	125
MS.gene46197.t1	AT4G37850	43.889	180	80	7	147	308	128	304	3.34e-33	125
MS.gene46197.t1	AT2G22750	33.631	336	158	14	8	308	4	309	2.12e-30	117
MS.gene46197.t1	AT2G22750	33.631	336	158	14	8	308	4	309	2.35e-30	117
MS.gene46197.t1	AT2G22750	33.131	329	156	13	15	308	6	305	6.45e-30	116
MS.gene46197.t1	AT2G22760	38.554	166	89	3	156	308	108	273	1.29e-29	114
MS.gene46197.t1	AT2G22760	38.554	166	89	3	156	308	108	273	1.96e-29	114
MS.gene46197.t1	AT2G22750	37.788	217	97	6	125	308	70	281	2.22e-29	114
MS.gene46197.t1	AT2G22750	37.788	217	97	6	125	308	70	281	2.24e-29	114
MS.gene46197.t1	AT2G22770	38.095	168	79	2	166	308	131	298	3.12e-25	103
MS.gene46197.t1	AT4G17880	33.175	211	109	8	110	291	350	557	1.31e-17	83.6
MS.gene46197.t1	AT5G46760	35.329	167	79	7	152	291	396	560	2.37e-17	82.8
MS.gene46197.t1	AT1G32640	32.075	159	81	3	159	293	434	589	8.40e-16	78.2
MS.gene46197.t1	AT2G46510	37.931	116	54	3	159	264	377	484	8.48e-15	75.1
MS.gene46197.t1	AT1G01260	25.974	231	135	5	91	306	351	560	1.81e-13	71.2
MS.gene46197.t1	AT1G01260	25.974	231	135	5	91	306	351	560	1.81e-13	71.2
MS.gene46197.t1	AT1G01260	25.974	231	135	5	91	306	351	560	1.81e-13	71.2
MS.gene46197.t1	AT4G09820	29.193	161	97	3	118	278	321	464	4.48e-13	69.7
MS.gene46197.t1	AT4G16430	46.575	73	35	1	152	220	301	373	1.01e-12	68.6
MS.gene46197.t1	AT5G46830	54.839	62	24	1	163	220	335	396	3.50e-12	67.0
MS.gene46197.t1	AT5G41315	29.348	184	90	7	158	305	437	616	7.20e-12	66.2
MS.gene46197.t1	AT5G41315	29.348	184	90	7	158	305	440	619	7.76e-12	66.2
MS.gene46197.t1	AT5G41315	29.348	184	90	7	158	305	432	611	8.16e-12	66.2
MS.gene46197.t1	AT3G26744	29.487	156	90	2	168	303	308	463	7.37e-11	63.2
MS.gene46197.t1	AT3G26744	29.487	156	90	2	168	303	308	463	9.06e-11	62.8
MS.gene46197.t1	AT3G26744	29.487	156	90	2	168	303	308	463	9.06e-11	62.8
MS.gene46197.t1	AT3G26744	29.487	156	90	2	168	303	308	463	9.06e-11	62.8

Find 47 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTTGTTCCTAACCTTAAAA+AGG	0.267726	4.2:+39231779	MS.gene46197:CDS
CAGCAGCTGGTTATCTGATT+TGG	0.268145	4.2:+39230925	MS.gene46197:CDS
TCAAGAACAAAACAAACAAT+TGG	0.334442	4.2:+39231377	MS.gene46197:CDS
CAAGTGGAAGCAAGAGTGTT+AGG	0.334987	4.2:+39232594	MS.gene46197:CDS
GGGGCTTCTAGTTAAAATTA+TGG	0.343764	4.2:+39232656	MS.gene46197:CDS
GATGGTGATGGAGAAATATT+TGG	0.350142	4.2:-39231483	None:intergenic
CTGCAAGAGCAATGAAGCTT+TGG	0.357341	4.2:-39231755	None:intergenic
ATCAGTGTCTCCAACCGAAT+TGG	0.364748	4.2:+39231590	MS.gene46197:CDS
CAAGAACAAAACAAACAATT+GGG	0.390107	4.2:+39231378	MS.gene46197:CDS
CATCTGCATCAAGAAAATTA+AGG	0.394973	4.2:-39231317	None:intergenic
TTGATGATACTTTCATTGCT+TGG	0.395476	4.2:-39230901	None:intergenic
ATCGCTGCATATGCATGGTT+TGG	0.407010	4.2:-39232517	None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG	0.409697	4.2:-39232588	None:intergenic
AGAAACCTCAAAAGGGTCAT+TGG	0.411401	4.2:+39231632	MS.gene46197:CDS
AATAACAGTGTCTTACCCTT+TGG	0.416567	4.2:+39232711	MS.gene46197:CDS
GCCCCTTGTGCTCCTTGCAT+TGG	0.417499	4.2:-39232638	None:intergenic
CACTCAACAGAAACCTCAAA+AGG	0.444007	4.2:+39231624	MS.gene46197:CDS
TAGGAAAACAAGTGTTGATT+CGG	0.449123	4.2:+39232613	MS.gene46197:CDS
TGCAAGAGCAATGAAGCTTT+GGG	0.460124	4.2:-39231754	None:intergenic
AAAGAGGAGTTAGATGGTGA+TGG	0.464747	4.2:-39231495	None:intergenic
GATAACATTGAATGTGTTGT+TGG	0.466089	4.2:+39232561	MS.gene46197:CDS
TGACTTGCTGAGATCATTTG+TGG	0.473303	4.2:-39231409	None:intergenic
AACTGAAAAGAGGAGTTAGA+TGG	0.496291	4.2:-39231501	None:intergenic
GCTGAGATCATTTGTGGAAG+TGG	0.497595	4.2:-39231403	None:intergenic
AGCAAAAGGCCTCGTGCTCA+TGG	0.502148	4.2:+39231687	MS.gene46197:CDS
GGTAGCTACCTGAGCAATGA+TGG	0.511294	4.2:-39232754	None:intergenic
AAGGCCTCGTGCTCATGGTA+AGG	0.535577	4.2:+39231692	MS.gene46197:CDS
TTCTTGATGCAGATGTGGGA+GGG	0.544131	4.2:+39231325	MS.gene46197:CDS
CGACATTACCATCATTGCTC+AGG	0.544333	4.2:+39232746	MS.gene46197:CDS
GTTGATTCGGTTCCAATGCA+AGG	0.545125	4.2:+39232626	MS.gene46197:CDS
GTTCCAATGCAAGGAGCACA+AGG	0.563766	4.2:+39232635	MS.gene46197:CDS
TCTTCATCGCTGCATATGCA+TGG	0.570607	4.2:-39232522	None:intergenic
AAGTATCATCAATCAGCAGC+TGG	0.573007	4.2:+39230912	MS.gene46197:CDS
TTTCTTGATGCAGATGTGGG+AGG	0.583981	4.2:+39231324	MS.gene46197:CDS
TGGTATTTGAAACTGAAAAG+AGG	0.585974	4.2:-39231511	None:intergenic
ACTCAACAGAAACCTCAAAA+GGG	0.587077	4.2:+39231625	MS.gene46197:CDS
GTCGAGTGTAGAATCTCCAA+AGG	0.590011	4.2:-39232727	None:intergenic
TCCAATGCAAGGAGCACAAG+GGG	0.595381	4.2:+39232637	MS.gene46197:CDS
TGTTGGTTCACCATTTCAAG+TGG	0.611743	4.2:+39232578	MS.gene46197:CDS
TCATGGTAAGGATCACATCA+TGG	0.611981	4.2:+39231704	MS.gene46197:CDS
TCGAGTGTAGAATCTCCAAA+GGG	0.615421	4.2:-39232726	None:intergenic
CTGCATATGCATGGTTTGGT+CGG	0.617639	4.2:-39232513	None:intergenic
CGAATACAATATATTTGCTG+AGG	0.624364	4.2:+39231287	MS.gene46197:CDS
TGAAGATTCGTCATCATGTG+AGG	0.642706	4.2:+39232539	MS.gene46197:CDS
TTCCAATGCAAGGAGCACAA+GGG	0.644827	4.2:+39232636	MS.gene46197:CDS
AAGAACAAAACAAACAATTG+GGG	0.650416	4.2:+39231379	MS.gene46197:CDS
TGATCCTTACCATGAGCACG+AGG	0.705697	4.2:-39231696	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTTTATATTTTGAAATATTT+AGG	+	chr4.2:39231965-39231984	MS.gene46197:intron	10.0%
!!!	TTTATTATTTTTCTTTTAGA+TGG	+	chr4.2:39232410-39232429	MS.gene46197:intron	10.0%
!!	AAAAAAAAATCTTGAAGACT+TGG	-	chr4.2:39231159-39231178	None:intergenic	20.0%
!!	ATACTTTGATCATATGTAAA+GGG	-	chr4.2:39232024-39232043	None:intergenic	20.0%
!!	ATTTGACATATAATTATGAG+CGG	+	chr4.2:39232309-39232328	MS.gene46197:intron	20.0%
!!	CCTTAAATAAGAATAAACAT+AGG	+	chr4.2:39231114-39231133	MS.gene46197:intron	20.0%
!!	TATACATGACATATATGAAT+TGG	-	chr4.2:39231894-39231913	None:intergenic	20.0%
!!	TGTATATTGTTTGTGTATAT+AGG	-	chr4.2:39232243-39232262	None:intergenic	20.0%
!!!	CCTATGTTTATTCTTATTTA+AGG	-	chr4.2:39231117-39231136	None:intergenic	20.0%
!!!	CTTACATTTAACTTAATCAA+TGG	-	chr4.2:39231029-39231048	None:intergenic	20.0%
!!!	GAACTTTTATTTTTTTTTGC+AGG	+	chr4.2:39231257-39231276	MS.gene46197:intron	20.0%
!!!	GTTTATTCTTATTTAAGGTT+AGG	-	chr4.2:39231112-39231131	None:intergenic	20.0%
!!!	TTACATAACATACCTTTTTA+AGG	-	chr4.2:39231794-39231813	None:intergenic	20.0%
!!!	TTATTTTTTTTTGCAGGAAA+TGG	+	chr4.2:39231263-39231282	MS.gene46197:intron	20.0%
!!!	TTTTTTCAGACAATAATTGA+TGG	+	chr4.2:39231177-39231196	MS.gene46197:intron	20.0%
!	AAGAACAAAACAAACAATTG+GGG	+	chr4.2:39231379-39231398	MS.gene46197:CDS	25.0%
!	CAAGAACAAAACAAACAATT+GGG	+	chr4.2:39231378-39231397	MS.gene46197:CDS	25.0%
!	CACAAAAGTTGTCAAAAAAA+TGG	-	chr4.2:39232078-39232097	None:intergenic	25.0%
!	CATACTTTGATCATATGTAA+AGG	-	chr4.2:39232025-39232044	None:intergenic	25.0%
!	TAAAATTTGCACAAAAACCA+AGG	-	chr4.2:39232152-39232171	None:intergenic	25.0%
!	TAATCAACCATCTTTGAATT+TGG	-	chr4.2:39230990-39231009	None:intergenic	25.0%
!	TATATTATTTGTCTCAACGT+TGG	+	chr4.2:39231204-39231223	MS.gene46197:intron	25.0%
!	TCAAGAACAAAACAAACAAT+TGG	+	chr4.2:39231377-39231396	MS.gene46197:CDS	25.0%
!!	ATTCTAAGAGTTAGCTAATA+GGG	-	chr4.2:39231827-39231846	None:intergenic	25.0%
!!	GATTTGGTAAGAAAATCAAA+AGG	+	chr4.2:39230941-39230960	MS.gene46197:intron	25.0%
!!	GTGATTCATATTTTCCAATT+CGG	-	chr4.2:39231607-39231626	None:intergenic	25.0%
!!!	ATGCTATTTTACTCAATCAT+AGG	+	chr4.2:39231070-39231089	MS.gene46197:intron	25.0%
!!!	GTGTTATTTGAACAACTATT+TGG	-	chr4.2:39232219-39232238	None:intergenic	25.0%
!!!	TAACATACCTTTTTAAGGTT+AGG	-	chr4.2:39231789-39231808	None:intergenic	25.0%
	CATCTGCATCAAGAAAATTA+AGG	-	chr4.2:39231320-39231339	None:intergenic	30.0%
	GATAACATTGAATGTGTTGT+TGG	+	chr4.2:39232561-39232580	MS.gene46197:CDS	30.0%
	TAGGTCTCAAATAGATTTGT+AGG	+	chr4.2:39231133-39231152	MS.gene46197:intron	30.0%
	TCTTGTTCCTAACCTTAAAA+AGG	+	chr4.2:39231779-39231798	MS.gene46197:CDS	30.0%
!	AATTTTCTTGATGCAGATGT+GGG	+	chr4.2:39231321-39231340	MS.gene46197:CDS	30.0%
!	CGAATACAATATATTTGCTG+AGG	+	chr4.2:39231287-39231306	MS.gene46197:CDS	30.0%
!	GATTCTAAGAGTTAGCTAAT+AGG	-	chr4.2:39231828-39231847	None:intergenic	30.0%
!	TAATTTTCTTGATGCAGATG+TGG	+	chr4.2:39231320-39231339	MS.gene46197:CDS	30.0%
!	TGGTATTTGAAACTGAAAAG+AGG	-	chr4.2:39231514-39231533	None:intergenic	30.0%
!	TTCATATTTTCCAATTCGGT+TGG	-	chr4.2:39231603-39231622	None:intergenic	30.0%
!	TTGATGATACTTTCATTGCT+TGG	-	chr4.2:39230904-39230923	None:intergenic	30.0%
!!	TAGGAAAACAAGTGTTGATT+CGG	+	chr4.2:39232613-39232632	MS.gene46197:CDS	30.0%
!!!	ATTCTCTTTTGAGTTACTAG+GGG	-	chr4.2:39231562-39231581	None:intergenic	30.0%
!!!	CATTCTCTTTTGAGTTACTA+GGG	-	chr4.2:39231563-39231582	None:intergenic	30.0%
!!!	TCATTCTCTTTTGAGTTACT+AGG	-	chr4.2:39231564-39231583	None:intergenic	30.0%
!!!	TTTTTTCCACAACTTCCAAT+CGG	-	chr4.2:39232488-39232507	None:intergenic	30.0%
	AACTGAAAAGAGGAGTTAGA+TGG	-	chr4.2:39231504-39231523	None:intergenic	35.0%
	AATAACAGTGTCTTACCCTT+TGG	+	chr4.2:39232711-39232730	MS.gene46197:CDS	35.0%
	ACTCAACAGAAACCTCAAAA+GGG	+	chr4.2:39231625-39231644	MS.gene46197:CDS	35.0%
	ACTTTACCTCTTTATTGCCT+TGG	+	chr4.2:39232132-39232151	MS.gene46197:intron	35.0%
	CAAAAACCAAGGCAATAAAG+AGG	-	chr4.2:39232141-39232160	None:intergenic	35.0%
	CATCTTTGAATTTGGAAAGC+AGG	-	chr4.2:39230982-39231001	None:intergenic	35.0%
	CCAAAACCTCAAAAAGCAAA+AGG	+	chr4.2:39231673-39231692	MS.gene46197:CDS	35.0%
	CTGCTTTCCAAATTCAAAGA+TGG	+	chr4.2:39230980-39230999	MS.gene46197:intron	35.0%
	GAAAGAGCTTAAAAACCGAT+TGG	+	chr4.2:39232470-39232489	MS.gene46197:CDS	35.0%
	TAAAAACCGATTGGAAGTTG+TGG	+	chr4.2:39232479-39232498	MS.gene46197:CDS	35.0%
	TACTCAATCATAGGTCTCAA+GGG	+	chr4.2:39231079-39231098	MS.gene46197:intron	35.0%
	TTACTCAATCATAGGTCTCA+AGG	+	chr4.2:39231078-39231097	MS.gene46197:intron	35.0%
	TTGAATTTGGAAAGCAGGAA+AGG	-	chr4.2:39230977-39230996	None:intergenic	35.0%
!	ATTTTCCAATGACCCTTTTG+AGG	-	chr4.2:39231640-39231659	None:intergenic	35.0%
!	GGGGCTTCTAGTTAAAATTA+TGG	+	chr4.2:39232656-39232675	MS.gene46197:CDS	35.0%
!!	GATGGTGATGGAGAAATATT+TGG	-	chr4.2:39231486-39231505	None:intergenic	35.0%
!!!	CCTTTTGCTTTTTGAGGTTT+TGG	-	chr4.2:39231676-39231695	None:intergenic	35.0%
!!!	TTCTCTTTTGAGTTACTAGG+GGG	-	chr4.2:39231561-39231580	None:intergenic	35.0%
	AAAGAGGAGTTAGATGGTGA+TGG	-	chr4.2:39231498-39231517	None:intergenic	40.0%
	AAGTATCATCAATCAGCAGC+TGG	+	chr4.2:39230912-39230931	MS.gene46197:CDS	40.0%
	ACTCTTGCTTCCACTTGAAA+TGG	-	chr4.2:39232591-39232610	None:intergenic	40.0%
	AGAAACCTCAAAAGGGTCAT+TGG	+	chr4.2:39231632-39231651	MS.gene46197:CDS	40.0%
	CACTCAACAGAAACCTCAAA+AGG	+	chr4.2:39231624-39231643	MS.gene46197:CDS	40.0%
	TCATGGTAAGGATCACATCA+TGG	+	chr4.2:39231704-39231723	MS.gene46197:CDS	40.0%
	TCGAGTGTAGAATCTCCAAA+GGG	-	chr4.2:39232729-39232748	None:intergenic	40.0%
	TGAAGATTCGTCATCATGTG+AGG	+	chr4.2:39232539-39232558	MS.gene46197:CDS	40.0%
	TGCAAGAGCAATGAAGCTTT+GGG	-	chr4.2:39231757-39231776	None:intergenic	40.0%
!	AGTTACTAGGGGGTGAATTT+TGG	-	chr4.2:39231551-39231570	None:intergenic	40.0%
!	GTTACTAGGGGGTGAATTTT+GGG	-	chr4.2:39231550-39231569	None:intergenic	40.0%
!	TTACTAGGGGGTGAATTTTG+GGG	-	chr4.2:39231549-39231568	None:intergenic	40.0%
!!	TGACTTGCTGAGATCATTTG+TGG	-	chr4.2:39231412-39231431	None:intergenic	40.0%
!!	TGTTGGTTCACCATTTCAAG+TGG	+	chr4.2:39232578-39232597	MS.gene46197:CDS	40.0%
!!	TTTTGGGGGTTGTCAAAAGA+TGG	-	chr4.2:39231534-39231553	None:intergenic	40.0%
	ATCAGTGTCTCCAACCGAAT+TGG	+	chr4.2:39231590-39231609	MS.gene46197:CDS	45.0%
	ATCGCTGCATATGCATGGTT+TGG	-	chr4.2:39232520-39232539	None:intergenic	45.0%
	CAGCAGCTGGTTATCTGATT+TGG	+	chr4.2:39230925-39230944	MS.gene46197:CDS	45.0%
	CTGCAAGAGCAATGAAGCTT+TGG	-	chr4.2:39231758-39231777	None:intergenic	45.0%
	GCTGAGATCATTTGTGGAAG+TGG	-	chr4.2:39231406-39231425	None:intergenic	45.0%
	GTCGAGTGTAGAATCTCCAA+AGG	-	chr4.2:39232730-39232749	None:intergenic	45.0%
	TCTTCATCGCTGCATATGCA+TGG	-	chr4.2:39232525-39232544	None:intergenic	45.0%
	TTCTTGATGCAGATGTGGGA+GGG	+	chr4.2:39231325-39231344	MS.gene46197:CDS	45.0%
	TTTCTTGATGCAGATGTGGG+AGG	+	chr4.2:39231324-39231343	MS.gene46197:CDS	45.0%
!	TACTAGGGGGTGAATTTTGG+GGG	-	chr4.2:39231548-39231567	None:intergenic	45.0%
!	TTCCAATGCAAGGAGCACAA+GGG	+	chr4.2:39232636-39232655	MS.gene46197:CDS	45.0%
!!	CAAGTGGAAGCAAGAGTGTT+AGG	+	chr4.2:39232594-39232613	MS.gene46197:CDS	45.0%
!!	CTGCATATGCATGGTTTGGT+CGG	-	chr4.2:39232516-39232535	None:intergenic	45.0%
!!	GTTGATTCGGTTCCAATGCA+AGG	+	chr4.2:39232626-39232645	MS.gene46197:CDS	45.0%
!!!	ACGAGGCCTTTTGCTTTTTG+AGG	-	chr4.2:39231682-39231701	None:intergenic	45.0%
!!!	TTATTTTTTTTTGTAAATTT+TGG	+	chr4.2:39232174-39232193	MS.gene46197:intron	5.0%
!!!	TTTATATTTTGAAATATTTA+GGG	+	chr4.2:39231966-39231985	MS.gene46197:intron	5.0%
	TGATCCTTACCATGAGCACG+AGG	-	chr4.2:39231699-39231718	None:intergenic	50.0%
!	GTTCCAATGCAAGGAGCACA+AGG	+	chr4.2:39232635-39232654	MS.gene46197:CDS	50.0%
!	TCCAATGCAAGGAGCACAAG+GGG	+	chr4.2:39232637-39232656	MS.gene46197:CDS	50.0%
	AAGGCCTCGTGCTCATGGTA+AGG	+	chr4.2:39231692-39231711	MS.gene46197:CDS	55.0%
	AGCAAAAGGCCTCGTGCTCA+TGG	+	chr4.2:39231687-39231706	MS.gene46197:CDS	55.0%
	GCCCCTTGTGCTCCTTGCAT+TGG	-	chr4.2:39232641-39232660	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	39230884	39232767	39230884	ID=MS.gene46197
chr4.2	mRNA	39230884	39232767	39230884	ID=MS.gene46197.t1;Parent=MS.gene46197
chr4.2	exon	39230884	39230946	39230884	ID=MS.gene46197.t1.exon1;Parent=MS.gene46197.t1
chr4.2	CDS	39230884	39230946	39230884	ID=cds.MS.gene46197.t1;Parent=MS.gene46197.t1
chr4.2	exon	39231279	39231800	39231279	ID=MS.gene46197.t1.exon2;Parent=MS.gene46197.t1
chr4.2	CDS	39231279	39231800	39231279	ID=cds.MS.gene46197.t1;Parent=MS.gene46197.t1
chr4.2	exon	39232429	39232767	39232429	ID=MS.gene46197.t1.exon3;Parent=MS.gene46197.t1
chr4.2	CDS	39232429	39232767	39232429	ID=cds.MS.gene46197.t1;Parent=MS.gene46197.t1

Gene Sequence

>MS.gene46197

ATGGAGGAAATCAACAACCAAGCAATGAAAGTATCATCAATCAGCAGCTGGTTATCTGATTTGGTAAGAAAATCAAAAGGCAATTATTCACCTTTCCTGCTTTCCAAATTCAAAGATGGTTGATTATTAATTAATTCTTTTGCCATTGATTAAGTTAAATGTAAGCTAAGTGAAGCTTATAATCTTATGCTATTTTACTCAATCATAGGTCTCAAGGGAAATAAGCCTAACCTTAAATAAGAATAAACATAGGTCTCAAATAGATTTGTAGGCCAAGTCTTCAAGATTTTTTTTTTTTTCAGACAATAATTGATGGACTTTATATTATTTGTCTCAACGTTGGAATAATATAGTCATTAATTAATTAACACTTGAACTTTTATTTTTTTTTGCAGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTTAATTTTCTTGATGCAGATGTGGGAGGGTTTCTTTCAGATGACATATCTAATGTATTTCAAGAACAAAACAAACAATTGGGGTCCACTTCCACAAATGATCTCAGCAAGTCATTCATTCACGAAACAATTGATAATAGTGACAAAATCAATGAATCACTTTCACCAAATATTTCTCCATCACCATCTAACTCCTCTTTTCAGTTTCAAATACCATCTTTTGACAACCCCCAAAATTCACCCCCTAGTAACTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGGTCATTGGAAAATGAAAAGTTTGAAGCCAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAAGGATCACATCATGGCTGAGAGAAATCGTAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGGTATGTTATGTAATTTTCACTTACCCTATTAGCTAACTCTTAGAATCATCAACTATCAATCAATTACTTCATCGATAAATACATGTTGCACCAATTCATATATGTCATGTATAAGATTTTGATCACTAATATCTTTAAATATTTATCATAAAAAATTATGAAAAGTTTATATTTTGAAATATTTAGGGAGACAAATCGAACATCATATATATTAACGTTTCCCTTTACATATGATCAAAGTATGTTATATGAATGAGAAATGATATTTGAACATCCATTTTTTTGACAACTTTTGTGATAATTTTCTTTCTCATACTCACATTATTTTTTTACTTTACCTCTTTATTGCCTTGGTTTTTGTGCAAATTTTATTTTATTTTTTTTTGTAAATTTTGGTTGTCATATAAGTTGTCAACCAAATAGTTGTTCAAATAACACTCCTATATACACAAACAATATACATATTTAATAATTAATTACATATTTAATACATTCTTTGTCAAAAAATATTTGACATATAATTATGAGCGGTGAGTACAAATATAAGAAAATTAATTACATATTTAATACATTCTTTGTCAAAAAATATTTAATACATTCTTATCTTTCTTTATTATTTTTCTTTTAGATGGACAAGTTATCTGTACTAATTGACACTATCAAATACTTGAAAGAGCTTAAAAACCGATTGGAAGTTGTGGAAAAAAAGTCACCGACCAAACCATGCATATGCAGCGATGAAGATTCGTCATCATGTGAGGATAACATTGAATGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAGTGTTGATTCGGTTCCAATGCAAGGAGCACAAGGGGCTTCTAGTTAAAATTATGGTCGAAATTCAAAAATTTCAACTATTTGTTGTCAATAACAGTGTCTTACCCTTTGGAGATTCTACACTCGACATTACCATCATTGCTCAG

Protein sequence

>MS.gene46197.t1

MEEINNQAMKVSSISSWLSDLEMDEYNIFAEECNLNFLDADVGGFLSDDISNVFQEQNKQLGSTSTNDLSKSFIHETIDNSDKINESLSPNISPSPSNSSFQFQIPSFDNPQNSPPSNSKENETISVSPTELENMNHSTETSKGSLENEKFEAKTSKSKRPRAHGKDHIMAERNRREKLTQSFIALAALVPNLKKMDKLSVLIDTIKYLKELKNRLEVVEKKSPTKPCICSDEDSSSCEDNIECVVGSPFQVEARVLGKQVLIRFQCKEHKGLLVKIMVEIQKFQLFVVNNSVLPFGDSTLDITIIAQ