AlfalfaGEDB | MS.gene48701

M. sativa cultivar XinJiangDaYe / MS.gene48701

KEGG: -
GO: GO:0006810 GO:0006904 GO:0008150 GO:0009987 GO:0016192 GO:0022406 GO:0048278 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0140029 GO:0140056
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48701.t1	XP_024638176.1	83.9	416	27	2	2	377	333	748	5.30E-176	627.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48701.t1	F4IP69	52.2	425	153	4	2	377	415	838	2.2e-109	397.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48701.t1	G7JCN0	83.9	416	27	2	2	377	445	860	3.8e-176	627.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene48701	0.819806	9.57E-53	-1.69E-46
MS.gene049341	MS.gene48701	0.829753	4.31E-55	-1.69E-46
MS.gene049382	MS.gene48701	0.802402	5.71E-49	-1.69E-46
MS.gene049404	MS.gene48701	0.801443	8.98E-49	-1.69E-46
MS.gene049821	MS.gene48701	0.807221	5.62E-50	-1.69E-46
MS.gene049824	MS.gene48701	0.805359	1.39E-49	-1.69E-46
MS.gene049825	MS.gene48701	0.819958	8.83E-53	-1.69E-46
MS.gene049850	MS.gene48701	0.80714	5.85E-50	-1.69E-46
MS.gene049873	MS.gene48701	0.819489	1.13E-52	-1.69E-46
MS.gene050020	MS.gene48701	0.825006	5.93E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48701.t1	MTR_4g080110	87.740	416	11	2	2	377	445	860	0.0	707
MS.gene48701.t1	MTR_4g080110	86.436	376	11	2	2	337	445	820	0.0	627

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48701.t1	AT2G42700	55.529	425	139	5	2	377	357	780	3.22e-153	451
MS.gene48701.t1	AT2G42700	55.529	425	139	5	2	377	415	838	1.12e-152	451
MS.gene48701.t1	AT2G42700	51.982	454	139	6	2	377	415	867	1.34e-146	436

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Find 86 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTGAGCGTAAGCTC+TGG	0.521670	4.4:-71657956	MS.gene48701:CDS
AAAGAAAGAATCTACCATTG+AGG	0.556399	4.4:-71657422	MS.gene48701:CDS
AAAGTTGGAGTTGCGTGATA+GGG	0.562949	4.4:-71657487	MS.gene48701:CDS
AACAAAACGTGGGGCCGTAC+TGG	0.473790	4.4:-71658206	MS.gene48701:CDS
AACCAATCCCTTTCCGGCAT+AGG	0.534419	4.4:+71657359	None:intergenic
AAGAAAGAATCTACCATTGA+GGG	0.548080	4.4:-71657421	MS.gene48701:CDS
AAGAATCTACCATTGAGGGA+TGG	0.643126	4.4:-71657417	MS.gene48701:CDS
AAGACTTCTTGGCCATAGTC+AGG	0.452598	4.4:-71657241	MS.gene48701:intron
AAGGGAAAAGGATATCTCGA+AGG	0.607130	4.4:-71657856	MS.gene48701:CDS
AAGGTATTAGCAAGGGTGCT+GGG	0.563585	4.4:-71657333	MS.gene48701:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGAATCTACCATTG+AGG	-	chr4.4:71657560-71657579	MS.gene48701:CDS	30.0%
AAGAAAGAATCTACCATTGA+GGG	-	chr4.4:71657561-71657580	MS.gene48701:CDS	30.0%
ACATACTCGATTTACTACTA+GGG	-	chr4.4:71658256-71658275	MS.gene48701:CDS	30.0%
ATAGACAGTAAGGATAGAAA+AGG	+	chr4.4:71657851-71657870	None:intergenic	30.0%
CACACATAAATAAAGGGAAA+AGG	-	chr4.4:71657114-71657133	MS.gene48701:intron	30.0%
TAGACAGTAAGGATAGAAAA+GGG	+	chr4.4:71657850-71657869	None:intergenic	30.0%
TAGATGAAGAAACAAAACGT+GGG	-	chr4.4:71656766-71656785	MS.gene48701:CDS	30.0%
TATTAGCAAGTCAAAATCAG+AGG	-	chr4.4:71657357-71657376	MS.gene48701:CDS	30.0%
TCTAGTATAGCTTCCAATAA+TGG	+	chr4.4:71656750-71656769	None:intergenic	30.0%
TGATCCTTTATTCGCATAAA+GGG	-	chr4.4:71658107-71658126	MS.gene48701:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	71656708	71658296	71656708	ID=MS.gene48701
chr4.4	mRNA	71656708	71658296	71656708	ID=MS.gene48701.t1;Parent=MS.gene48701
chr4.4	exon	71658046	71658296	71658046	ID=MS.gene48701.t1.exon1;Parent=MS.gene48701.t1
chr4.4	CDS	71658046	71658296	71658046	ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1
chr4.4	exon	71657856	71657988	71657856	ID=MS.gene48701.t1.exon2;Parent=MS.gene48701.t1
chr4.4	CDS	71657856	71657988	71657856	ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1
chr4.4	exon	71657242	71657793	71657242	ID=MS.gene48701.t1.exon3;Parent=MS.gene48701.t1
chr4.4	CDS	71657242	71657793	71657242	ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1
chr4.4	exon	71657052	71657120	71657052	ID=MS.gene48701.t1.exon4;Parent=MS.gene48701.t1
chr4.4	CDS	71657052	71657120	71657052	ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1
chr4.4	exon	71656708	71656836	71656708	ID=MS.gene48701.t1.exon5;Parent=MS.gene48701.t1
chr4.4	CDS	71656708	71656836	71656708	ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1

Gene Sequence

>MS.gene48701

AAAGGATCTTTTGTCTCCTCTGATAATTTTCGTGGCGTGCCATTATTGGAAGCTATACTAGATGAAGAAACAAAACGTGGGGCCGTACTGGTAAAGAAATGGCTACAAGAAGCTATGCGCAGGGAACATGTTACTGTGAATGTGAAATCTCGTTCTTCTGTTGTTACAACTCTTGAGTTGCAAGCTATGATCAAAGCATTGTCCAAGAGCCAATCATCTTTGCTAAGGAACAAAGGAATTATCCTATTAGCGTCAGCCACATTATCAGCCCTTGAGGAATCAGATTGCACCAAATGAGATGCATTTAGCAGTGCAGTGAAAACTCTGAGCGTAAGCTCTGGAGAAACCAGTCAAAGTCTTGCCGCTCAAATTGGCGATCTCATAAATCAGAGTGCTCTGTTGGGATCACACATAAATAAAGGGAAAAGGATATCTCGAAGGGTTTGATTTCTTTGCAAGATGCTTTGCTGTTAATGATCATTGGATATATTTTGGCAGGTCAGAATTTTCCAACAGCTGGTTCTGATGGGCCATTTTCTTGGCAAGAGGAACGTCTGTTGAAAGAAGCCGTTGTTGATGCTCTTCTTGAAAACTCATCTGTAGTAAATCTAAAGTTTCTAGATGGACTAAAGAAAGAGCTTGAAGCTAATATTAGCAAGTCAAAATCAGAGGAAGCTACCGAAGAGCTGGAGATTGATGATTTTGACGATGATCAGTGGGGCAAATGGGGTGATGAAGACGGTGAGGATGATAATAAAAATGAACAAGTATATGGTGACATGCAACTAAAGTTGGAGTTGCGTGATAGGGTGGATAACTTTTTCAAATTTCTTCATAAGTTGTCTAATTTGAAAAGAAAGAATCTACCATTGAGGGATGGTTCATTGACCGTGGAAGGCAGTTTTGATGAAGATGCCTATGCCGGAAAGGGATTGGTTTATAAGGTATTAGCAAGGGTGCTGGGCAAGTACGATGTGCCTGGGTTAGAATATCATTCTTCCACTGTGGGGCGCATTATTAATCGTGGATTTGGAAGACTTCTTGGCCATAGTCAGGTGATTATGGTTCCTTAACCTATGCAGGACTTTTGATTTAGTCATCCATTTTTAAAAAATATGATAATCACTGTTTTTCTCTCTCCCTTTTCTATCCTTACTGTCTATACAAATGCTGCAGGCTAAACCAAGTCTTGCTGATCAAAATGTCATTTTGGTGTTTGTCATCGGGGGTATTAATGGACTAGAGGTGAAATTCTCAAATGCCTTGGTCTCCTCCATCCTTCTTTCTATTTCCCTACACATAACACTAGTTGGTTTCTACCAACTTGGCTAATATTTTCTAAAAGATGACATTGATTGTGTGTTTTCGCTATATATTCAAATTTGTTTAGAATAAAACTTGATCCTTTATTCGCATAAAGGGTAACATAAGACAATTTTATATTACTTTTCTTTACCTAGGTGCGTCAAGCAAGGCAGGCATTGGTTGACAGCGGAAGACCTGATATAGAGTTACTTGTTGGTGGAACAACTCTTCTTACTCCTGATGACATACTCGATTTACTACTAGGGGACTCGAGTTACTTTTAA

Protein sequence

>MS.gene48701.t1

KGSFVSSDNFRGVPLLEAILDEETKRGAVLVKKWLQEAMRREHVTVNVKSRSSVVTTLELQAMIKALSKSQSSLLRNKGIILLASAVKTLSVSSGETSQSLAAQIGDLINQSALLGSHINKGKRISRRNFPTAGSDGPFSWQEERLLKEAVVDALLENSSVVNLKFLDGLKKELEANISKSKSEEATEELEIDDFDDDQWGKWGDEDGEDDNKNEQVYGDMQLKLELRDRVDNFFKFLHKLSNLKRKNLPLRDGSLTVEGSFDEDAYAGKGLVYKVLARVLGKYDVPGLEYHSSTVGRIINRGFGRLLGHSQAKPSLADQNVILVFVIGGINGLEVRQARQALVDSGRPDIELLVGGTTLLTPDDILDLLLGDSSYF