Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48701.t1 | XP_024638176.1 | 83.9 | 416 | 27 | 2 | 2 | 377 | 333 | 748 | 5.30E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48701.t1 | F4IP69 | 52.2 | 425 | 153 | 4 | 2 | 377 | 415 | 838 | 2.2e-109 | 397.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48701.t1 | G7JCN0 | 83.9 | 416 | 27 | 2 | 2 | 377 | 445 | 860 | 3.8e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene48701 | 0.819806 | 9.57E-53 | -1.69E-46 |
| MS.gene049341 | MS.gene48701 | 0.829753 | 4.31E-55 | -1.69E-46 |
| MS.gene049382 | MS.gene48701 | 0.802402 | 5.71E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene48701 | 0.801443 | 8.98E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene48701 | 0.807221 | 5.62E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene48701 | 0.805359 | 1.39E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene48701 | 0.819958 | 8.83E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene48701 | 0.80714 | 5.85E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene48701 | 0.819489 | 1.13E-52 | -1.69E-46 |
| MS.gene050020 | MS.gene48701 | 0.825006 | 5.93E-54 | -1.69E-46 |
| MS.gene05016 | MS.gene48701 | 0.812099 | 5.03E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene48701 | 0.801606 | 8.32E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene48701 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene48701 | 0.85496 | 8.69E-62 | -1.69E-46 |
| MS.gene050808 | MS.gene48701 | 0.832436 | 9.46E-56 | -1.69E-46 |
| MS.gene050815 | MS.gene48701 | 0.804808 | 1.81E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene48701 | 0.832801 | 7.68E-56 | -1.69E-46 |
| MS.gene051328 | MS.gene48701 | 0.803135 | 4.03E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene48701 | 0.820897 | 5.38E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene48701 | 0.820796 | 5.68E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene48701 | 0.825821 | 3.80E-54 | -1.69E-46 |
| MS.gene051957 | MS.gene48701 | 0.808884 | 2.49E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene48701 | 0.801255 | 9.81E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene48701 | 0.836762 | 7.74E-57 | -1.69E-46 |
| MS.gene052397 | MS.gene48701 | 0.801769 | 7.70E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene48701 | 0.850103 | 2.11E-60 | -1.69E-46 |
| MS.gene052611 | MS.gene48701 | 0.824258 | 8.90E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene48701 | 0.833026 | 6.75E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene48701 | 0.852501 | 4.43E-61 | -1.69E-46 |
| MS.gene052773 | MS.gene48701 | 0.820909 | 5.35E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene48701 | 0.821538 | 3.83E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene48701 | 0.81548 | 9.05E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene48701 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene48701 | 0.828029 | 1.13E-54 | -1.69E-46 |
| MS.gene053563 | MS.gene48701 | 0.82332 | 1.48E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene48701 | 0.807337 | 5.31E-50 | -1.69E-46 |
| MS.gene053597 | MS.gene48701 | 0.821972 | 3.04E-53 | -1.69E-46 |
| MS.gene053599 | MS.gene48701 | 0.84924 | 3.67E-60 | -1.69E-46 |
| MS.gene05364 | MS.gene48701 | 0.80527 | 1.45E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene48701 | 0.801146 | 1.03E-48 | -1.69E-46 |
| MS.gene054250 | MS.gene48701 | 0.803083 | 4.13E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene48701 | 0.822833 | 1.92E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene48701 | 0.813684 | 2.26E-51 | -1.69E-46 |
| MS.gene055162 | MS.gene48701 | 0.800292 | 1.54E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene48701 | 0.836877 | 7.23E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene48701 | 0.844089 | 9.38E-59 | -1.69E-46 |
| MS.gene055468 | MS.gene48701 | 0.844393 | 7.78E-59 | -1.69E-46 |
| MS.gene055512 | MS.gene48701 | 0.838689 | 2.48E-57 | -1.69E-46 |
| MS.gene055580 | MS.gene48701 | -0.816843 | 4.49E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene48701 | 0.803965 | 2.71E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene48701 | 0.808088 | 3.68E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene48701 | 0.811309 | 7.47E-51 | -1.69E-46 |
| MS.gene056005 | MS.gene48701 | 0.823475 | 1.36E-53 | -1.69E-46 |
| MS.gene056043 | MS.gene48701 | -0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene48701 | 0.802525 | 5.38E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene48701 | 0.803377 | 3.59E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene48701 | 0.805849 | 1.09E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene48701 | 0.824783 | 6.69E-54 | -1.69E-46 |
| MS.gene056589 | MS.gene48701 | 0.806786 | 6.95E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene48701 | 0.80188 | 7.31E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene48701 | 0.803399 | 3.55E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene48701 | 0.811912 | 5.52E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene48701 | 0.826685 | 2.37E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene48701 | 0.823781 | 1.15E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene48701 | 0.80849 | 3.02E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene48701 | 0.801749 | 7.78E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene48701 | 0.821833 | 3.27E-53 | -1.69E-46 |
| MS.gene058636 | MS.gene48701 | 0.804629 | 1.97E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene48701 | 0.809742 | 1.63E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene48701 | 0.81113 | 8.17E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene48701 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene48701 | 0.81089 | 9.20E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene48701 | 0.818135 | 2.30E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene48701 | 0.825772 | 3.91E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene48701 | 0.809303 | 2.02E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene48701 | 0.844431 | 7.60E-59 | -1.69E-46 |
| MS.gene060312 | MS.gene48701 | 0.803777 | 2.97E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene48701 | 0.82057 | 6.40E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene48701 | 0.810166 | 1.32E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene48701 | 0.840986 | 6.25E-58 | -1.69E-46 |
| MS.gene060803 | MS.gene48701 | 0.802846 | 4.62E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48701.t1 | MTR_4g080110 | 87.740 | 416 | 11 | 2 | 2 | 377 | 445 | 860 | 0.0 | 707 |
| MS.gene48701.t1 | MTR_4g080110 | 86.436 | 376 | 11 | 2 | 2 | 337 | 445 | 820 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48701.t1 | AT2G42700 | 55.529 | 425 | 139 | 5 | 2 | 377 | 357 | 780 | 3.22e-153 | 451 |
| MS.gene48701.t1 | AT2G42700 | 55.529 | 425 | 139 | 5 | 2 | 377 | 415 | 838 | 1.12e-152 | 451 |
| MS.gene48701.t1 | AT2G42700 | 51.982 | 454 | 139 | 6 | 2 | 377 | 415 | 867 | 1.34e-146 | 436 |
Find 86 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATAAACCAATCCCTTTC+CGG | 0.228005 | 4.4:+71657353 | None:intergenic |
| CGTGGATTTGGAAGACTTCT+TGG | 0.236769 | 4.4:-71657252 | MS.gene48701:CDS |
| CGCATTATTAATCGTGGATT+TGG | 0.244667 | 4.4:-71657264 | MS.gene48701:CDS |
| TGCTGATCAAAATGTCATTT+TGG | 0.250911 | 4.4:-71657084 | MS.gene48701:CDS |
| TTGGGATCACACATAAATAA+AGG | 0.293611 | 4.4:-71657875 | MS.gene48701:CDS |
| ATAATGTGGCTGACGCTAAT+AGG | 0.296344 | 4.4:+71658032 | None:intergenic |
| CGTTCCTCTTGCCAAGAAAA+TGG | 0.330118 | 4.4:+71657744 | None:intergenic |
| CGGAAAGGGATTGGTTTATA+AGG | 0.334422 | 4.4:-71657352 | MS.gene48701:CDS |
| CAAAGTCTTGCCGCTCAAAT+TGG | 0.342456 | 4.4:-71657923 | MS.gene48701:CDS |
| TAAAGTTGGAGTTGCGTGAT+AGG | 0.353789 | 4.4:-71657488 | MS.gene48701:CDS |
| TCTAGTATAGCTTCCAATAA+TGG | 0.359655 | 4.4:+71658235 | None:intergenic |
| CTGGGCAAGTACGATGTGCC+TGG | 0.363010 | 4.4:-71657315 | MS.gene48701:CDS |
| CGATGATCAGTGGGGCAAAT+GGG | 0.417050 | 4.4:-71657568 | MS.gene48701:CDS |
| GTAAATCTAAAGTTTCTAGA+TGG | 0.426555 | 4.4:-71657672 | MS.gene48701:CDS |
| TGTTCCTTAGCAAAGATGAT+TGG | 0.427202 | 4.4:+71658065 | None:intergenic |
| ACGATGATCAGTGGGGCAAA+TGG | 0.432670 | 4.4:-71657569 | MS.gene48701:CDS |
| GACATACTCGATTTACTACT+AGG | 0.434265 | 4.4:-71656727 | MS.gene48701:CDS |
| TAGCAAAGATGATTGGCTCT+TGG | 0.441818 | 4.4:+71658072 | None:intergenic |
| GAACCATAATCACCTGACTA+TGG | 0.444374 | 4.4:+71657229 | None:intergenic |
| AAGACTTCTTGGCCATAGTC+AGG | 0.452598 | 4.4:-71657241 | MS.gene48701:intron |
| CCTGATATAGAGTTACTTGT+TGG | 0.454298 | 4.4:-71656775 | MS.gene48701:CDS |
| TTTCCAACAGCTGGTTCTGA+TGG | 0.455704 | 4.4:-71657768 | MS.gene48701:CDS |
| CCAACAAGTAACTCTATATC+AGG | 0.457309 | 4.4:+71656775 | None:intergenic |
| TGCCTATGCCGGAAAGGGAT+TGG | 0.459495 | 4.4:-71657361 | MS.gene48701:CDS |
| CATAAATCAGAGTGCTCTGT+TGG | 0.462189 | 4.4:-71657894 | MS.gene48701:CDS |
| AACAAAACGTGGGGCCGTAC+TGG | 0.473790 | 4.4:-71658206 | MS.gene48701:CDS |
| AGAGGAAGCTACCGAAGAGC+TGG | 0.474067 | 4.4:-71657607 | MS.gene48701:CDS |
| ATCATCAATCTCCAGCTCTT+CGG | 0.478313 | 4.4:+71657596 | None:intergenic |
| TGGGATCACACATAAATAAA+GGG | 0.479287 | 4.4:-71657874 | MS.gene48701:CDS |
| TAAGGTATTAGCAAGGGTGC+TGG | 0.480645 | 4.4:-71657334 | MS.gene48701:CDS |
| TTGAGCGGCAAGACTTTGAC+TGG | 0.487236 | 4.4:+71657928 | None:intergenic |
| CACACATAAATAAAGGGAAA+AGG | 0.498110 | 4.4:-71657868 | MS.gene48701:CDS |
| CTAGGTGCGTCAAGCAAGGC+AGG | 0.505115 | 4.4:-71656818 | MS.gene48701:intron |
| TGGTGACATGCAACTAAAGT+TGG | 0.506816 | 4.4:-71657502 | MS.gene48701:CDS |
| GAAGATGCCTATGCCGGAAA+GGG | 0.513122 | 4.4:-71657366 | MS.gene48701:CDS |
| GATATAGAGTTACTTGTTGG+TGG | 0.514072 | 4.4:-71656772 | MS.gene48701:CDS |
| GGCTACAAGAAGCTATGCGC+AGG | 0.518100 | 4.4:-71658174 | MS.gene48701:CDS |
| GGGCCGTACTGGTAAAGAAA+TGG | 0.518510 | 4.4:-71658195 | MS.gene48701:CDS |
| ATAAATCAGAGTGCTCTGTT+GGG | 0.520222 | 4.4:-71657893 | MS.gene48701:CDS |
| AAAACTCTGAGCGTAAGCTC+TGG | 0.521670 | 4.4:-71657956 | MS.gene48701:CDS |
| TAGCCATTTCTTTACCAGTA+CGG | 0.522419 | 4.4:+71658192 | None:intergenic |
| TTTGATGAAGATGCCTATGC+CGG | 0.524421 | 4.4:-71657372 | MS.gene48701:CDS |
| GAATATCATTCTTCCACTGT+GGG | 0.526024 | 4.4:-71657288 | MS.gene48701:CDS |
| AGTAAATCGAGTATGTCATC+AGG | 0.530370 | 4.4:+71656733 | None:intergenic |
| GTCAATGAACCATCCCTCAA+TGG | 0.534394 | 4.4:+71657408 | None:intergenic |
| AACCAATCCCTTTCCGGCAT+AGG | 0.534419 | 4.4:+71657359 | None:intergenic |
| TGGTTTATAAGGTATTAGCA+AGG | 0.534687 | 4.4:-71657341 | MS.gene48701:CDS |
| GGCCCATCAGAACCAGCTGT+TGG | 0.537118 | 4.4:+71657765 | None:intergenic |
| TTCCAACAGCTGGTTCTGAT+GGG | 0.542245 | 4.4:-71657767 | MS.gene48701:CDS |
| AAGAAAGAATCTACCATTGA+GGG | 0.548080 | 4.4:-71657421 | MS.gene48701:CDS |
| GATGGTTCATTGACCGTGGA+AGG | 0.550211 | 4.4:-71657399 | MS.gene48701:CDS |
| GCGTCAAGCAAGGCAGGCAT+TGG | 0.553242 | 4.4:-71656812 | MS.gene48701:CDS |
| AAAGAAAGAATCTACCATTG+AGG | 0.556399 | 4.4:-71657422 | MS.gene48701:CDS |
| ACATACTCGATTTACTACTA+GGG | 0.557665 | 4.4:-71656726 | MS.gene48701:CDS |
| GTTGGAGTTGCGTGATAGGG+TGG | 0.559581 | 4.4:-71657484 | MS.gene48701:CDS |
| AAAGTTGGAGTTGCGTGATA+GGG | 0.562949 | 4.4:-71657487 | MS.gene48701:CDS |
| AAGGTATTAGCAAGGGTGCT+GGG | 0.563585 | 4.4:-71657333 | MS.gene48701:CDS |
| TGAAGATGCCTATGCCGGAA+AGG | 0.565857 | 4.4:-71657367 | MS.gene48701:CDS |
| TTACCTAGGTGCGTCAAGCA+AGG | 0.577279 | 4.4:-71656822 | MS.gene48701:intron |
| TTCATCAAAACTGCCTTCCA+CGG | 0.577302 | 4.4:+71657386 | None:intergenic |
| AGAGCCAATCATCTTTGCTA+AGG | 0.579265 | 4.4:-71658069 | MS.gene48701:CDS |
| GGTTTATAAGGTATTAGCAA+GGG | 0.587394 | 4.4:-71657340 | MS.gene48701:CDS |
| TATGAGATCGCCAATTTGAG+CGG | 0.593438 | 4.4:+71657913 | None:intergenic |
| GTGGGGCGCATTATTAATCG+TGG | 0.594146 | 4.4:-71657270 | MS.gene48701:CDS |
| ATTAATAATGCGCCCCACAG+TGG | 0.599402 | 4.4:+71657275 | None:intergenic |
| TCATCTTTGCTAAGGAACAA+AGG | 0.604133 | 4.4:-71658061 | MS.gene48701:CDS |
| AAGGGAAAAGGATATCTCGA+AGG | 0.607130 | 4.4:-71657856 | MS.gene48701:CDS |
| GATGATCAGTGGGGCAAATG+GGG | 0.608922 | 4.4:-71657567 | MS.gene48701:CDS |
| GGCAAATGGGGTGATGAAGA+CGG | 0.614768 | 4.4:-71657555 | MS.gene48701:CDS |
| AGGGAAAAGGATATCTCGAA+GGG | 0.621390 | 4.4:-71657855 | MS.gene48701:intron |
| TGGGCAAGTACGATGTGCCT+GGG | 0.621646 | 4.4:-71657314 | MS.gene48701:CDS |
| GAAGAATGATATTCTAACCC+AGG | 0.636433 | 4.4:+71657297 | None:intergenic |
| TATTAGCAAGTCAAAATCAG+AGG | 0.638306 | 4.4:-71657625 | MS.gene48701:CDS |
| AAGAATCTACCATTGAGGGA+TGG | 0.643126 | 4.4:-71657417 | MS.gene48701:CDS |
| AGAATATCATTCTTCCACTG+TGG | 0.644306 | 4.4:-71657289 | MS.gene48701:CDS |
| GAGGGATGGTTCATTGACCG+TGG | 0.645678 | 4.4:-71657403 | MS.gene48701:CDS |
| TTCAAGAAGAGCATCAACAA+CGG | 0.650232 | 4.4:+71657707 | None:intergenic |
| GCTACAAGAAGCTATGCGCA+GGG | 0.666812 | 4.4:-71658173 | MS.gene48701:CDS |
| CATACTCGATTTACTACTAG+GGG | 0.672095 | 4.4:-71656725 | MS.gene48701:CDS |
| CACGCCACGAAAATTATCAG+AGG | 0.681345 | 4.4:+71658258 | None:intergenic |
| TAGATGAAGAAACAAAACGT+GGG | 0.686519 | 4.4:-71658216 | MS.gene48701:CDS |
| AATATCATTCTTCCACTGTG+GGG | 0.691146 | 4.4:-71657287 | MS.gene48701:CDS |
| CTAGATGAAGAAACAAAACG+TGG | 0.694140 | 4.4:-71658217 | MS.gene48701:CDS |
| AGATGAAGAAACAAAACGTG+GGG | 0.696959 | 4.4:-71658215 | MS.gene48701:CDS |
| AGGCAGGCATTGGTTGACAG+CGG | 0.705952 | 4.4:-71656802 | MS.gene48701:CDS |
| ATGGGGTGATGAAGACGGTG+AGG | 0.723975 | 4.4:-71657550 | MS.gene48701:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATGAACAAGTATA+TGG | - | chr4.4:71657460-71657479 | MS.gene48701:CDS | 15.0% |
| !!! | AATGATCATTGGATATATTT+TGG | - | chr4.4:71657180-71657199 | MS.gene48701:intron | 20.0% |
| !!! | TATATTACTTTTCTTTACCT+AGG | - | chr4.4:71658146-71658165 | MS.gene48701:CDS | 20.0% |
| ! | TTAGAAAATATTAGCCAAGT+TGG | + | chr4.4:71658030-71658049 | None:intergenic | 25.0% |
| !! | GTAAATCTAAAGTTTCTAGA+TGG | - | chr4.4:71657310-71657329 | MS.gene48701:CDS | 25.0% |
| AAAGAAAGAATCTACCATTG+AGG | - | chr4.4:71657560-71657579 | MS.gene48701:CDS | 30.0% | |
| AAGAAAGAATCTACCATTGA+GGG | - | chr4.4:71657561-71657580 | MS.gene48701:CDS | 30.0% | |
| ACATACTCGATTTACTACTA+GGG | - | chr4.4:71658256-71658275 | MS.gene48701:CDS | 30.0% | |
| ATAGACAGTAAGGATAGAAA+AGG | + | chr4.4:71657851-71657870 | None:intergenic | 30.0% | |
| CACACATAAATAAAGGGAAA+AGG | - | chr4.4:71657114-71657133 | MS.gene48701:intron | 30.0% | |
| TAGACAGTAAGGATAGAAAA+GGG | + | chr4.4:71657850-71657869 | None:intergenic | 30.0% | |
| TAGATGAAGAAACAAAACGT+GGG | - | chr4.4:71656766-71656785 | MS.gene48701:CDS | 30.0% | |
| TATTAGCAAGTCAAAATCAG+AGG | - | chr4.4:71657357-71657376 | MS.gene48701:CDS | 30.0% | |
| TCTAGTATAGCTTCCAATAA+TGG | + | chr4.4:71656750-71656769 | None:intergenic | 30.0% | |
| TGATCCTTTATTCGCATAAA+GGG | - | chr4.4:71658107-71658126 | MS.gene48701:CDS | 30.0% | |
| TGGGATCACACATAAATAAA+GGG | - | chr4.4:71657108-71657127 | MS.gene48701:intron | 30.0% | |
| TTGATCCTTTATTCGCATAA+AGG | - | chr4.4:71658106-71658125 | MS.gene48701:CDS | 30.0% | |
| TTGGGATCACACATAAATAA+AGG | - | chr4.4:71657107-71657126 | MS.gene48701:intron | 30.0% | |
| ! | GGTTTATAAGGTATTAGCAA+GGG | - | chr4.4:71657642-71657661 | MS.gene48701:CDS | 30.0% |
| ! | TGGTTTATAAGGTATTAGCA+AGG | - | chr4.4:71657641-71657660 | MS.gene48701:CDS | 30.0% |
| !! | TGCTGATCAAAATGTCATTT+TGG | - | chr4.4:71657898-71657917 | MS.gene48701:CDS | 30.0% |
| !!! | ATCATTGGATATATTTTGGC+AGG | - | chr4.4:71657184-71657203 | MS.gene48701:intron | 30.0% |
| AACCAACTAGTGTTATGTGT+AGG | + | chr4.4:71658003-71658022 | None:intergenic | 35.0% | |
| AATATCATTCTTCCACTGTG+GGG | - | chr4.4:71657695-71657714 | MS.gene48701:CDS | 35.0% | |
| ACCAACTAGTGTTATGTGTA+GGG | + | chr4.4:71658002-71658021 | None:intergenic | 35.0% | |
| ACTGCTAAATGCATCTCATT+TGG | + | chr4.4:71657000-71657019 | None:intergenic | 35.0% | |
| AGAATATCATTCTTCCACTG+TGG | - | chr4.4:71657693-71657712 | MS.gene48701:CDS | 35.0% | |
| AGATGAAGAAACAAAACGTG+GGG | - | chr4.4:71656767-71656786 | MS.gene48701:CDS | 35.0% | |
| AGTAAATCGAGTATGTCATC+AGG | + | chr4.4:71658252-71658271 | None:intergenic | 35.0% | |
| CAGCATTTGTATAGACAGTA+AGG | + | chr4.4:71657861-71657880 | None:intergenic | 35.0% | |
| CATACTCGATTTACTACTAG+GGG | - | chr4.4:71658257-71658276 | MS.gene48701:CDS | 35.0% | |
| CCAACAAGTAACTCTATATC+AGG | + | chr4.4:71658210-71658229 | None:intergenic | 35.0% | |
| CCTGATATAGAGTTACTTGT+TGG | - | chr4.4:71658207-71658226 | MS.gene48701:CDS | 35.0% | |
| CGCATTATTAATCGTGGATT+TGG | - | chr4.4:71657718-71657737 | MS.gene48701:CDS | 35.0% | |
| CTAAATCAAAAGTCCTGCAT+AGG | + | chr4.4:71657784-71657803 | None:intergenic | 35.0% | |
| CTAGATGAAGAAACAAAACG+TGG | - | chr4.4:71656765-71656784 | MS.gene48701:CDS | 35.0% | |
| CTTATAAACCAATCCCTTTC+CGG | + | chr4.4:71657632-71657651 | None:intergenic | 35.0% | |
| GAAGAATGATATTCTAACCC+AGG | + | chr4.4:71657688-71657707 | None:intergenic | 35.0% | |
| GAATATCATTCTTCCACTGT+GGG | - | chr4.4:71657694-71657713 | MS.gene48701:CDS | 35.0% | |
| GACATACTCGATTTACTACT+AGG | - | chr4.4:71658255-71658274 | MS.gene48701:CDS | 35.0% | |
| GTTACCCTTTATGCGAATAA+AGG | + | chr4.4:71658114-71658133 | None:intergenic | 35.0% | |
| TAGCCATTTCTTTACCAGTA+CGG | + | chr4.4:71656793-71656812 | None:intergenic | 35.0% | |
| TAGGGAAATAGAAAGAAGGA+TGG | + | chr4.4:71657984-71658003 | None:intergenic | 35.0% | |
| TCATCTTTGCTAAGGAACAA+AGG | - | chr4.4:71656921-71656940 | MS.gene48701:intron | 35.0% | |
| TGTGTAGGGAAATAGAAAGA+AGG | + | chr4.4:71657988-71658007 | None:intergenic | 35.0% | |
| TGTTCCTTAGCAAAGATGAT+TGG | + | chr4.4:71656920-71656939 | None:intergenic | 35.0% | |
| ! | ATAAATCAGAGTGCTCTGTT+GGG | - | chr4.4:71657089-71657108 | MS.gene48701:CDS | 35.0% |
| ! | GATATAGAGTTACTTGTTGG+TGG | - | chr4.4:71658210-71658229 | MS.gene48701:CDS | 35.0% |
| !! | ACATTTTGATCAGCAAGACT+TGG | + | chr4.4:71657893-71657912 | None:intergenic | 35.0% |
| !! | ATGATTTTGACGATGATCAG+TGG | - | chr4.4:71657404-71657423 | MS.gene48701:CDS | 35.0% |
| !! | GCTTTGCTGTTAATGATCAT+TGG | - | chr4.4:71657169-71657188 | MS.gene48701:intron | 35.0% |
| !! | TGATTTTGACGATGATCAGT+GGG | - | chr4.4:71657405-71657424 | MS.gene48701:CDS | 35.0% |
| !! | TTCAAGAAGAGCATCAACAA+CGG | + | chr4.4:71657278-71657297 | None:intergenic | 35.0% |
| !!! | GTCATTTTGGTGTTTGTCAT+CGG | - | chr4.4:71657911-71657930 | MS.gene48701:CDS | 35.0% |
| !!! | TCATTTTGGTGTTTGTCATC+GGG | - | chr4.4:71657912-71657931 | MS.gene48701:CDS | 35.0% |
| AAAGTTGGAGTTGCGTGATA+GGG | - | chr4.4:71657495-71657514 | MS.gene48701:CDS | 40.0% | |
| AAGAATCTACCATTGAGGGA+TGG | - | chr4.4:71657565-71657584 | MS.gene48701:CDS | 40.0% | |
| AAGGGAAAAGGATATCTCGA+AGG | - | chr4.4:71657126-71657145 | MS.gene48701:intron | 40.0% | |
| ACTGTCTATACAAATGCTGC+AGG | - | chr4.4:71657862-71657881 | MS.gene48701:CDS | 40.0% | |
| AGAGCCAATCATCTTTGCTA+AGG | - | chr4.4:71656913-71656932 | MS.gene48701:intron | 40.0% | |
| AGGGAAAAGGATATCTCGAA+GGG | - | chr4.4:71657127-71657146 | MS.gene48701:intron | 40.0% | |
| ATAATGTGGCTGACGCTAAT+AGG | + | chr4.4:71656953-71656972 | None:intergenic | 40.0% | |
| ATCATCAATCTCCAGCTCTT+CGG | + | chr4.4:71657389-71657408 | None:intergenic | 40.0% | |
| CAAAAGTCCTGCATAGGTTA+AGG | + | chr4.4:71657778-71657797 | None:intergenic | 40.0% | |
| GAACCATAATCACCTGACTA+TGG | + | chr4.4:71657756-71657775 | None:intergenic | 40.0% | |
| GGAAATAGAAAGAAGGATGG+AGG | + | chr4.4:71657981-71658000 | None:intergenic | 40.0% | |
| GGTGAAATTCTCAAATGCCT+TGG | - | chr4.4:71657952-71657971 | MS.gene48701:CDS | 40.0% | |
| TAAAGTTGGAGTTGCGTGAT+AGG | - | chr4.4:71657494-71657513 | MS.gene48701:CDS | 40.0% | |
| TATGAGATCGCCAATTTGAG+CGG | + | chr4.4:71657072-71657091 | None:intergenic | 40.0% | |
| TATGGTTCCTTAACCTATGC+AGG | - | chr4.4:71657768-71657787 | MS.gene48701:CDS | 40.0% | |
| TCCCTACACATAACACTAGT+TGG | - | chr4.4:71657998-71658017 | MS.gene48701:intron | 40.0% | |
| TGGTGACATGCAACTAAAGT+TGG | - | chr4.4:71657480-71657499 | MS.gene48701:CDS | 40.0% | |
| TTCATCAAAACTGCCTTCCA+CGG | + | chr4.4:71657599-71657618 | None:intergenic | 40.0% | |
| TTTGATGAAGATGCCTATGC+CGG | - | chr4.4:71657610-71657629 | MS.gene48701:CDS | 40.0% | |
| ! | CATAAATCAGAGTGCTCTGT+TGG | - | chr4.4:71657088-71657107 | MS.gene48701:CDS | 40.0% |
| ! | CTAGTTGGTTTCTACCAACT+TGG | - | chr4.4:71658013-71658032 | MS.gene48701:intron | 40.0% |
| ! | GTCTCCTCTGATAATTTTCG+TGG | - | chr4.4:71656720-71656739 | MS.gene48701:CDS | 40.0% |
| ! | TAGCAAAGATGATTGGCTCT+TGG | + | chr4.4:71656913-71656932 | None:intergenic | 40.0% |
| !! | CGGAAAGGGATTGGTTTATA+AGG | - | chr4.4:71657630-71657649 | MS.gene48701:CDS | 40.0% |
| !! | GATTTTGACGATGATCAGTG+GGG | - | chr4.4:71657406-71657425 | MS.gene48701:CDS | 40.0% |
| !! | TTTGTCATCGGGGGTATTAA+TGG | - | chr4.4:71657923-71657942 | MS.gene48701:CDS | 40.0% |
| !!! | ATTTTGGTGTTTGTCATCGG+GGG | - | chr4.4:71657914-71657933 | MS.gene48701:CDS | 40.0% |
| !!! | CATTTTGGTGTTTGTCATCG+GGG | - | chr4.4:71657913-71657932 | MS.gene48701:CDS | 40.0% |
| AAAACTCTGAGCGTAAGCTC+TGG | - | chr4.4:71657026-71657045 | MS.gene48701:intron | 45.0% | |
| AAGACTTCTTGGCCATAGTC+AGG | - | chr4.4:71657741-71657760 | MS.gene48701:CDS | 45.0% | |
| ATTAATAATGCGCCCCACAG+TGG | + | chr4.4:71657710-71657729 | None:intergenic | 45.0% | |
| CAAAGTCTTGCCGCTCAAAT+TGG | - | chr4.4:71657059-71657078 | MS.gene48701:CDS | 45.0% | |
| CACGCCACGAAAATTATCAG+AGG | + | chr4.4:71656727-71656746 | None:intergenic | 45.0% | |
| CGTGGATTTGGAAGACTTCT+TGG | - | chr4.4:71657730-71657749 | MS.gene48701:CDS | 45.0% | |
| CGTTCCTCTTGCCAAGAAAA+TGG | + | chr4.4:71657241-71657260 | None:intergenic | 45.0% | |
| GGTGCAATCTGATTCCTCAA+GGG | + | chr4.4:71656979-71656998 | None:intergenic | 45.0% | |
| GTCAATGAACCATCCCTCAA+TGG | + | chr4.4:71657577-71657596 | None:intergenic | 45.0% | |
| TGGCCATAGTCAGGTGATTA+TGG | - | chr4.4:71657750-71657769 | MS.gene48701:CDS | 45.0% | |
| TGGTGCAATCTGATTCCTCA+AGG | + | chr4.4:71656980-71656999 | None:intergenic | 45.0% | |
| ! | GGTCAGAATTTTCCAACAGC+TGG | - | chr4.4:71657205-71657224 | MS.gene48701:intron | 45.0% |
| ! | TAAGGTATTAGCAAGGGTGC+TGG | - | chr4.4:71657648-71657667 | MS.gene48701:CDS | 45.0% |
| ! | TTCCTCAAGGGCTGATAATG+TGG | + | chr4.4:71656967-71656986 | None:intergenic | 45.0% |
| !! | AAGGTATTAGCAAGGGTGCT+GGG | - | chr4.4:71657649-71657668 | MS.gene48701:CDS | 45.0% |
| !! | GTTCTGATGGGCCATTTTCT+TGG | - | chr4.4:71657227-71657246 | MS.gene48701:intron | 45.0% |
| !! | TTCCAACAGCTGGTTCTGAT+GGG | - | chr4.4:71657215-71657234 | MS.gene48701:intron | 45.0% |
| !! | TTTCCAACAGCTGGTTCTGA+TGG | - | chr4.4:71657214-71657233 | MS.gene48701:intron | 45.0% |
| !! | TTTTCGTGGCGTGCCATTAT+TGG | - | chr4.4:71656734-71656753 | MS.gene48701:CDS | 45.0% |
| !!! | ATTATCATATTTTTTAAAAA+TGG | + | chr4.4:71657811-71657830 | None:intergenic | 5.0% |
| AACCAATCCCTTTCCGGCAT+AGG | + | chr4.4:71657626-71657645 | None:intergenic | 50.0% | |
| AAGAAGGATGGAGGAGACCA+AGG | + | chr4.4:71657972-71657991 | None:intergenic | 50.0% | |
| ACGATGATCAGTGGGGCAAA+TGG | - | chr4.4:71657413-71657432 | MS.gene48701:CDS | 50.0% | |
| AGCCACATTATCAGCCCTTG+AGG | - | chr4.4:71656962-71656981 | MS.gene48701:intron | 50.0% | |
| CGATGATCAGTGGGGCAAAT+GGG | - | chr4.4:71657414-71657433 | MS.gene48701:CDS | 50.0% | |
| GAAGATGCCTATGCCGGAAA+GGG | - | chr4.4:71657616-71657635 | MS.gene48701:CDS | 50.0% | |
| GATGATCAGTGGGGCAAATG+GGG | - | chr4.4:71657415-71657434 | MS.gene48701:CDS | 50.0% | |
| GATGGTTCATTGACCGTGGA+AGG | - | chr4.4:71657583-71657602 | MS.gene48701:CDS | 50.0% | |
| GCTACAAGAAGCTATGCGCA+GGG | - | chr4.4:71656809-71656828 | MS.gene48701:CDS | 50.0% | |
| GGCAAATGGGGTGATGAAGA+CGG | - | chr4.4:71657427-71657446 | MS.gene48701:CDS | 50.0% | |
| GTGGGGCGCATTATTAATCG+TGG | - | chr4.4:71657712-71657731 | MS.gene48701:CDS | 50.0% | |
| TGAAGATGCCTATGCCGGAA+AGG | - | chr4.4:71657615-71657634 | MS.gene48701:CDS | 50.0% | |
| TTACCTAGGTGCGTCAAGCA+AGG | - | chr4.4:71658160-71658179 | MS.gene48701:CDS | 50.0% | |
| TTGAGCGGCAAGACTTTGAC+TGG | + | chr4.4:71657057-71657076 | None:intergenic | 50.0% | |
| ! | GGGCCGTACTGGTAAAGAAA+TGG | - | chr4.4:71656787-71656806 | MS.gene48701:CDS | 50.0% |
| !! | CGGGGGTATTAATGGACTAG+AGG | - | chr4.4:71657931-71657950 | MS.gene48701:CDS | 50.0% |
| !! | TGGGCCATTTTCTTGGCAAG+AGG | - | chr4.4:71657234-71657253 | MS.gene48701:intron | 50.0% |
| AACAAAACGTGGGGCCGTAC+TGG | - | chr4.4:71656776-71656795 | MS.gene48701:CDS | 55.0% | |
| AGAGGAAGCTACCGAAGAGC+TGG | - | chr4.4:71657375-71657394 | MS.gene48701:CDS | 55.0% | |
| ATGGGGTGATGAAGACGGTG+AGG | - | chr4.4:71657432-71657451 | MS.gene48701:CDS | 55.0% | |
| GAGGGATGGTTCATTGACCG+TGG | - | chr4.4:71657579-71657598 | MS.gene48701:CDS | 55.0% | |
| GGCTACAAGAAGCTATGCGC+AGG | - | chr4.4:71656808-71656827 | MS.gene48701:CDS | 55.0% | |
| GTTGGAGTTGCGTGATAGGG+TGG | - | chr4.4:71657498-71657517 | MS.gene48701:CDS | 55.0% | |
| TGCCTATGCCGGAAAGGGAT+TGG | - | chr4.4:71657621-71657640 | MS.gene48701:CDS | 55.0% | |
| TGGGCAAGTACGATGTGCCT+GGG | - | chr4.4:71657668-71657687 | MS.gene48701:CDS | 55.0% | |
| !! | AGGCAGGCATTGGTTGACAG+CGG | - | chr4.4:71658180-71658199 | MS.gene48701:CDS | 55.0% |
| CTAGGTGCGTCAAGCAAGGC+AGG | - | chr4.4:71658164-71658183 | MS.gene48701:CDS | 60.0% | |
| CTGCCTTGCTTGACGCACCT+AGG | + | chr4.4:71658166-71658185 | None:intergenic | 60.0% | |
| CTGGGCAAGTACGATGTGCC+TGG | - | chr4.4:71657667-71657686 | MS.gene48701:CDS | 60.0% | |
| GCGTCAAGCAAGGCAGGCAT+TGG | - | chr4.4:71658170-71658189 | MS.gene48701:CDS | 60.0% | |
| GGCCCATCAGAACCAGCTGT+TGG | + | chr4.4:71657220-71657239 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 71656708 | 71658296 | 71656708 | ID=MS.gene48701 |
| chr4.4 | mRNA | 71656708 | 71658296 | 71656708 | ID=MS.gene48701.t1;Parent=MS.gene48701 |
| chr4.4 | exon | 71658046 | 71658296 | 71658046 | ID=MS.gene48701.t1.exon1;Parent=MS.gene48701.t1 |
| chr4.4 | CDS | 71658046 | 71658296 | 71658046 | ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1 |
| chr4.4 | exon | 71657856 | 71657988 | 71657856 | ID=MS.gene48701.t1.exon2;Parent=MS.gene48701.t1 |
| chr4.4 | CDS | 71657856 | 71657988 | 71657856 | ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1 |
| chr4.4 | exon | 71657242 | 71657793 | 71657242 | ID=MS.gene48701.t1.exon3;Parent=MS.gene48701.t1 |
| chr4.4 | CDS | 71657242 | 71657793 | 71657242 | ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1 |
| chr4.4 | exon | 71657052 | 71657120 | 71657052 | ID=MS.gene48701.t1.exon4;Parent=MS.gene48701.t1 |
| chr4.4 | CDS | 71657052 | 71657120 | 71657052 | ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1 |
| chr4.4 | exon | 71656708 | 71656836 | 71656708 | ID=MS.gene48701.t1.exon5;Parent=MS.gene48701.t1 |
| chr4.4 | CDS | 71656708 | 71656836 | 71656708 | ID=cds.MS.gene48701.t1;Parent=MS.gene48701.t1 |
| Gene Sequence |
| Protein sequence |
