AlfalfaGEDB | MS.gene48805

M. sativa cultivar XinJiangDaYe / MS.gene48805

KEGG: K00430
GO: GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0020037 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0051187 GO:0055114 GO:0072593 GO:0097159 GO:1901363
PFAM: PF00141.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48805.t1	RHN59427.1	92.2	321	25	0	1	321	33	353	2.90E-167	597.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48805.t1	Q9FLC0	58.6	326	128	4	1	321	1	324	9.4e-98	358.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48805.t1	A0A072UHR9	92.2	321	25	0	1	321	1	321	2.1e-167	597.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene48805	0.852829	3.57E-61	-1.69E-46
MS.gene049609	MS.gene48805	-0.800336	1.51E-48	-1.69E-46
MS.gene049634	MS.gene48805	0.823277	1.51E-53	-1.69E-46
MS.gene049805	MS.gene48805	-0.80581	1.12E-49	-1.69E-46
MS.gene050095	MS.gene48805	0.827032	1.96E-54	-1.69E-46
MS.gene050096	MS.gene48805	0.855176	7.52E-62	-1.69E-46
MS.gene050647	MS.gene48805	0.814205	1.73E-51	-1.69E-46
MS.gene050720	MS.gene48805	0.820396	7.01E-53	-1.69E-46
MS.gene050747	MS.gene48805	-0.800796	1.22E-48	-1.69E-46
MS.gene05079	MS.gene48805	0.802466	5.54E-49	-1.69E-46

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48805.t1	MTR_4g029170	90.966	321	29	0	1	321	1	321	0.0	614
MS.gene48805.t1	MTR_4g029180	92.212	321	25	0	1	321	1	321	0.0	591
MS.gene48805.t1	MTR_5g074710	62.145	317	114	4	9	321	7	321	5.56e-139	396
MS.gene48805.t1	MTR_5g074740	60.615	325	120	5	1	321	1	321	1.69e-136	390
MS.gene48805.t1	MTR_5g074760	59.692	325	123	5	1	321	1	321	3.38e-135	387
MS.gene48805.t1	MTR_5g074860	60.252	317	117	5	11	320	10	324	2.38e-133	382
MS.gene48805.t1	MTR_5g074970	59.133	323	128	2	2	321	5	326	6.70e-131	376
MS.gene48805.t1	MTR_3g466200	58.917	314	125	3	11	321	8	320	9.83e-127	365
MS.gene48805.t1	MTR_3g072190	58.025	324	127	5	1	321	1	318	2.40e-125	361
MS.gene48805.t1	MTR_3g094650	55.096	314	137	3	10	321	11	322	7.08e-122	353

Showing 1 to 10 of 139 entries

Previous1 2 3 4 5…14Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48805.t1	AT5G05340	62.626	297	107	3	27	321	30	324	7.66e-130	373
MS.gene48805.t1	AT5G58400	52.038	319	150	2	5	321	8	325	5.13e-113	330
MS.gene48805.t1	AT1G14550	52.665	319	146	4	7	321	4	321	5.76e-113	330
MS.gene48805.t1	AT5G58390	55.161	310	136	2	14	321	8	316	3.39e-111	325
MS.gene48805.t1	AT4G36430	53.465	303	131	4	27	321	30	330	1.61e-109	322
MS.gene48805.t1	AT2G18150	53.135	303	132	4	27	321	36	336	9.83e-109	320
MS.gene48805.t1	AT2G18140	53.135	303	132	4	27	321	35	335	1.99e-107	317
MS.gene48805.t1	AT1G44970	50.637	314	144	4	17	321	35	346	5.51e-106	313
MS.gene48805.t1	AT5G06720	49.842	317	148	4	14	321	19	333	7.98e-106	312
MS.gene48805.t1	AT1G14540	50.158	317	154	4	7	321	1	315	2.60e-105	310

Showing 1 to 10 of 87 entries

Previous1 2 3 4 5…9Next

Find 56 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACCTCGTTGCCCTATC+TGG	0.289133	4.4:+73690025	MS.gene48805:CDS
AAAGACTGAATGATGGTCCG+GGG	0.668454	4.4:-73689961	None:intergenic
AAGCCACTTACTGGGAGACA+AGG	0.665399	4.4:+73690376	MS.gene48805:CDS
AAGTCGTGCCGATGCAGATT+CGG	0.343313	4.4:+73689931	MS.gene48805:CDS
AATAGTGTGTGTTCCAGATA+GGG	0.515683	4.4:-73690038	None:intergenic
AATGTTTGTCCCAGAGAAGG+CGG	0.632543	4.4:+73690142	MS.gene48805:CDS
ACCGTCATGGAATGTGAAAC+TGG	0.352275	4.4:+73689886	MS.gene48805:CDS
AGAAAGACTGAATGATGGTC+CGG	0.452732	4.4:-73689963	None:intergenic
AGCTCTCGACAGTGTTACAC+CGG	0.659336	4.4:+73690180	MS.gene48805:CDS
AGTCGTGCCGATGCAGATTC+GGG	0.407331	4.4:+73689932	MS.gene48805:CDS

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CCAAATTTAAATTCAGCTAG+AGG	+	chr4.4:73689393-73689412	MS.gene48805:CDS	30.0%
CCTCTAGCTGAATTTAAATT+TGG	-	chr4.4:73689396-73689415	None:intergenic	30.0%
CGCAATTGATTAAAAAGAAG+GGG	+	chr4.4:73690227-73690246	MS.gene48805:CDS	30.0%
GAAATATTAAGCCACTTACT+GGG	+	chr4.4:73690368-73690387	MS.gene48805:CDS	30.0%
GCGCAATTGATTAAAAAGAA+GGG	+	chr4.4:73690226-73690245	MS.gene48805:CDS	30.0%
TCTGATCAAGAATTGTTGAA+TGG	+	chr4.4:73690259-73690278	MS.gene48805:CDS	30.0%
TGTTGTTGTCATTGTAGATT+CGG	-	chr4.4:73690093-73690112	None:intergenic	30.0%
AATAGTGTGTGTTCCAGATA+GGG	-	chr4.4:73690041-73690060	None:intergenic	35.0%
ACAGAAATTGTTAGCATGGT+TGG	+	chr4.4:73689615-73689634	MS.gene48805:intron	35.0%
AGTTGAGAAAGACTGAATGA+TGG	-	chr4.4:73689971-73689990	None:intergenic	35.0%

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	73688727	73690432	73688727	ID=MS.gene48805
chr4.4	mRNA	73688727	73690432	73688727	ID=MS.gene48805.t1;Parent=MS.gene48805
chr4.4	exon	73688727	73688942	73688727	ID=MS.gene48805.t1.exon1;Parent=MS.gene48805.t1
chr4.4	CDS	73688727	73688942	73688727	ID=cds.MS.gene48805.t1;Parent=MS.gene48805.t1
chr4.4	exon	73689330	73689524	73689330	ID=MS.gene48805.t1.exon2;Parent=MS.gene48805.t1
chr4.4	CDS	73689330	73689524	73689330	ID=cds.MS.gene48805.t1;Parent=MS.gene48805.t1
chr4.4	exon	73689878	73690432	73689878	ID=MS.gene48805.t1.exon3;Parent=MS.gene48805.t1
chr4.4	CDS	73689878	73690432	73689878	ID=cds.MS.gene48805.t1;Parent=MS.gene48805.t1

Gene Sequence

>MS.gene48805

ATGTCCTCACATAGGTATTTCTCAATGTTCTTTCATGCAATAGTGTTAGCAGCTCTTGCAACAACAACATATTCAGCACTCACAACAAATTACTATGACTACACATGCCCTAATGCTTTGAGCACTATTAGAAGTGTTGTTAAAGCTGCAGTTCAAAGAGAGAACCGTATGGGTGCTTCTTTACTACGCTTGCACTTTCATGATTGCTTTGTTAATGTAAGATTATAATTTCTCTCCATGTGTATACATAATATTATTACCTCAAAAAAATTTATATCAAAATTTTCAATTTTTCTCTAAGTCATACTACAAGAAATATTAAAATTAGTAGTGACGAATATTATTTACATAAATAATAAAATAACTCTATTTCTTTCATCACAAAATTTATAATGTTCTCTAAATTTTGCGCTCTCTTTTTTGTTTTAGTAATGATCTATCATAATAGTGACAAATTAATTTTAATTACTTTTCGAAAGGAATCGATAAATTTATTTTAATGATTAATTTATAAACTGATTAGACTGATAATATGAAAATTAGTCGTGAAATTAAACTAATTAGACTAATTTATTTTAATGATTAATTTATGGTGTGATTCAGGGTTGTGATGGTTCAATTCTTCTAGACTCTACACCTTCGATGGACAGTGAAAAAAATGCAAATCCAAATTTAAATTCAGCTAGAGGATTTGAAGTGGTTGATGAGATTAAGGAAGCTGTTGATAAAGCATGTGGAAAACCAGTTGTTTCTTGTGCAGACATATTGGCTGTAGCTGCAAGAGACTCTGTCGTTGCGGTTAGTAATAATACTGTTATAATTTATAAGTATATTCTACATTTTAATATATATACTTTATTTTATTTTGAACTAGTCGGTAATTTTAAAACAGAAATTGTTAGCATGGTTGGTTAATTTTTTTTGATCAAATGAATAAAATAAAGTTAATAAAAGGAAGGTGGTAAGAGTTAATCTTTTATATACCACCAACTTTGAATATATCAAAATTAAAAGGAAGGTGCTAATAAATTTATTTTATTGATATGACTGAGTCGATCTTACTTATATTAGTATTTACTTTGAATAGATCAAAGTGAAGTCACACAAGTTACATGCTACAAATTGAAATTTACAATTATATATGGATGCAGTTAGGAGGACCGTCATGGAATGTGAAACTGGGAAGAAGAGACTCAAAGACAGCAAGTCGTGCCGATGCAGATTCGGGCAATATCCCCGGACCATCATTCAGTCTTTCTCAACTCATCAAAAATTTTGAAAACCAGGGACTAAACGAAAAAGACCTCGTTGCCCTATCTGGAACACACACTATTGGATTCTCGCGCTGTCTTTTATTTAGAGACCGAATCTACAATGACAACAACATCAATGCAAACTTCGCAAAACAACTTCAAAATGTTTGTCCCAGAGAAGGCGGAGACTCAAACCTTGCAGCTCTCGACAGTGTTACACCGGCAAAATTTGATGTGGCTTATTACGCGCAATTGATTAAAAAGAAGGGGCTTCTTCATTCTGATCAAGAATTGTTGAATGGTGGTTATACTGGAGCATTGGTTAGAAAATATAGGCGTGATACAAGAACTTTCTATAAGGATTTTGCAAAATCTATGATTAAGATGGGAAATATTAAGCCACTTACTGGGAGACAAGGTGAAGTTCGTTGCAATTGCAGGAGAGCCAATTAA

Protein sequence

>MS.gene48805.t1

MSSHRYFSMFFHAIVLAALATTTYSALTTNYYDYTCPNALSTIRSVVKAAVQRENRMGASLLRLHFHDCFVNGCDGSILLDSTPSMDSEKNANPNLNSARGFEVVDEIKEAVDKACGKPVVSCADILAVAARDSVVALGGPSWNVKLGRRDSKTASRADADSGNIPGPSFSLSQLIKNFENQGLNEKDLVALSGTHTIGFSRCLLFRDRIYNDNNINANFAKQLQNVCPREGGDSNLAALDSVTPAKFDVAYYAQLIKKKGLLHSDQELLNGGYTGALVRKYRRDTRTFYKDFAKSMIKMGNIKPLTGRQGEVRCNCRRAN