Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49282.t1 | VDC94353.1 | 42.9 | 240 | 67 | 1 | 1 | 240 | 219 | 388 | 1.00E-34 | 157.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49282.t1 | Q6Q1P4 | 44.6 | 240 | 63 | 1 | 1 | 240 | 656 | 825 | 1.8e-24 | 114.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49282.t1 | A0A3P6B240 | 42.9 | 240 | 67 | 1 | 1 | 240 | 219 | 388 | 7.2e-35 | 157.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene49282 | 0.842756 | 2.13E-58 | -1.69E-46 |
| MS.gene049159 | MS.gene49282 | 0.841932 | 3.52E-58 | -1.69E-46 |
| MS.gene049368 | MS.gene49282 | 0.807031 | 6.17E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene49282 | 0.821333 | 4.27E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene49282 | 0.808015 | 3.81E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene49282 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene49282 | 0.81324 | 2.83E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene49282 | 0.814627 | 1.40E-51 | -1.69E-46 |
| MS.gene050780 | MS.gene49282 | 0.811173 | 7.99E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene49282 | 0.802348 | 5.85E-49 | -1.69E-46 |
| MS.gene050826 | MS.gene49282 | 0.808881 | 2.49E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene49282 | 0.848306 | 6.67E-60 | -1.69E-46 |
| MS.gene051180 | MS.gene49282 | 0.835349 | 1.77E-56 | -1.69E-46 |
| MS.gene051719 | MS.gene49282 | 0.807281 | 5.46E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene49282 | 0.812649 | 3.81E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene49282 | 0.806075 | 9.81E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene49282 | 0.816128 | 6.49E-52 | -1.69E-46 |
| MS.gene052020 | MS.gene49282 | 0.810359 | 1.20E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene49282 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene052323 | MS.gene49282 | 0.807872 | 4.09E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene49282 | 0.831055 | 2.07E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene49282 | 0.814242 | 1.70E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene49282 | 0.822275 | 2.58E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene49282 | 0.837376 | 5.39E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene49282 | 0.823353 | 1.45E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene49282 | 0.814464 | 1.52E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene49282 | 0.812496 | 4.12E-51 | -1.69E-46 |
| MS.gene05350 | MS.gene49282 | 0.814023 | 1.90E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene49282 | 0.808438 | 3.10E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene49282 | 0.800648 | 1.31E-48 | -1.69E-46 |
| MS.gene054467 | MS.gene49282 | 0.806106 | 9.66E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene49282 | 0.852385 | 4.78E-61 | -1.69E-46 |
| MS.gene054651 | MS.gene49282 | 0.802174 | 6.36E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene49282 | 0.818176 | 2.25E-52 | -1.69E-46 |
| MS.gene055311 | MS.gene49282 | 0.807168 | 5.77E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene49282 | 0.82549 | 4.56E-54 | -1.69E-46 |
| MS.gene055363 | MS.gene49282 | 0.801863 | 7.37E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene49282 | 0.810516 | 1.11E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene49282 | 0.813144 | 2.97E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene49282 | 0.804451 | 2.15E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene49282 | 0.817124 | 3.88E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene49282 | 0.824083 | 9.78E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene49282 | 0.824244 | 8.97E-54 | -1.69E-46 |
| MS.gene055864 | MS.gene49282 | 0.827777 | 1.30E-54 | -1.69E-46 |
| MS.gene055926 | MS.gene49282 | 0.828728 | 7.65E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene49282 | 0.800296 | 1.54E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene49282 | 0.813162 | 2.94E-51 | -1.69E-46 |
| MS.gene056390 | MS.gene49282 | 0.808874 | 2.50E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene49282 | 0.805434 | 1.34E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene49282 | 0.811151 | 8.08E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene49282 | 0.830522 | 2.80E-55 | -1.69E-46 |
| MS.gene057915 | MS.gene49282 | 0.862017 | 6.83E-64 | -1.69E-46 |
| MS.gene058010 | MS.gene49282 | 0.815211 | 1.04E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene49282 | 0.805373 | 1.38E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene49282 | 0.814438 | 1.54E-51 | -1.69E-46 |
| MS.gene059283 | MS.gene49282 | 0.817375 | 3.41E-52 | -1.69E-46 |
| MS.gene059439 | MS.gene49282 | 0.802114 | 6.54E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene49282 | 0.830374 | 3.04E-55 | -1.69E-46 |
| MS.gene059725 | MS.gene49282 | 0.810325 | 1.22E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene49282 | 0.818697 | 1.71E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene49282 | 0.820829 | 5.58E-53 | -1.69E-46 |
| MS.gene060637 | MS.gene49282 | 0.825117 | 5.58E-54 | -1.69E-46 |
| MS.gene060683 | MS.gene49282 | 0.841475 | 4.65E-58 | -1.69E-46 |
| MS.gene060685 | MS.gene49282 | 0.846351 | 2.29E-59 | -1.69E-46 |
| MS.gene060802 | MS.gene49282 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene49282 | 0.837041 | 6.57E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene49282 | 0.832584 | 8.70E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49282.t1 | MTR_1g069910 | 94.118 | 102 | 6 | 0 | 139 | 240 | 722 | 823 | 1.56e-54 | 188 |
| MS.gene49282.t1 | MTR_1g069910 | 96.667 | 60 | 2 | 0 | 10 | 69 | 663 | 722 | 8.75e-30 | 117 |
| MS.gene49282.t1 | MTR_1g059520 | 78.431 | 102 | 21 | 1 | 139 | 240 | 115 | 215 | 2.39e-43 | 149 |
| MS.gene49282.t1 | MTR_1g059520 | 76.667 | 60 | 14 | 0 | 10 | 69 | 56 | 115 | 5.06e-14 | 70.5 |
| MS.gene49282.t1 | MTR_0003s0460 | 70.707 | 99 | 29 | 0 | 142 | 240 | 718 | 816 | 1.06e-34 | 131 |
| MS.gene49282.t1 | MTR_0003s0460 | 63.934 | 61 | 21 | 1 | 10 | 69 | 655 | 715 | 5.57e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49282.t1 | AT3G54670 | 59.804 | 102 | 41 | 0 | 139 | 240 | 724 | 825 | 4.50e-29 | 115 |
| MS.gene49282.t1 | AT3G54670 | 65.278 | 72 | 24 | 1 | 7 | 78 | 662 | 732 | 2.13e-18 | 84.3 |
Find 50 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTTAATTTCTTCTTTGA+TGG | 0.266942 | 1.1:-52026388 | None:intergenic |
| AATGTCACCTTCTTCAGTTC+TGG | 0.335942 | 1.1:-52026417 | None:intergenic |
| TCTGAATCTCTCCCTTGCTC+TGG | 0.339053 | 1.1:+52025055 | MS.gene49282:CDS |
| AAGAATTCAGCAAGTCAGTT+GGG | 0.419124 | 1.1:+52026594 | MS.gene49282:CDS |
| CTGAATCTCTCCCTTGCTCT+GGG | 0.431427 | 1.1:+52025056 | MS.gene49282:CDS |
| GAGGATACAGACGGAGAGTC+AGG | 0.437605 | 1.1:-52025144 | None:intergenic |
| AGAGGAGTATGAGTCGGAGT+TGG | 0.455130 | 1.1:+52024547 | MS.gene49282:CDS |
| GAGTATGAGTCGGAGTTGGA+AGG | 0.467781 | 1.1:+52024551 | MS.gene49282:CDS |
| TCCTGCAGGTACAGTGTTCA+CGG | 0.468453 | 1.1:-52025603 | None:intergenic |
| GAGAGATTCAGACAGCGAAA+TGG | 0.473264 | 1.1:-52025044 | None:intergenic |
| TATGCAGCTCAACAGCGCTT+AGG | 0.476184 | 1.1:+52025170 | MS.gene49282:CDS |
| ACAAAATCCGGAACAATGAC+TGG | 0.477680 | 1.1:+52024342 | None:intergenic |
| AGTCAGGAACAGAGCAGAGA+AGG | 0.485833 | 1.1:-52025128 | None:intergenic |
| TGGGATGACAAGATACTTGA+AGG | 0.487149 | 1.1:+52024402 | MS.gene49282:CDS |
| CAGGAACAGAGCAGAGAAGG+AGG | 0.492873 | 1.1:-52025125 | None:intergenic |
| GTCGTCGCAGGCCCAGAGCA+AGG | 0.496828 | 1.1:-52025067 | None:intergenic |
| TCCACTGCAACATGTTCTAC+AGG | 0.502202 | 1.1:-52025635 | None:intergenic |
| AACACTGTACCTGCAGGAGA+TGG | 0.512103 | 1.1:+52025608 | MS.gene49282:CDS |
| TCAATATGCTGAGATTGAAA+AGG | 0.520480 | 1.1:+52024649 | MS.gene49282:CDS |
| CAAAGAGGAGGTGTCGTCGC+AGG | 0.520901 | 1.1:-52025079 | None:intergenic |
| AGTATGAGTCGGAGTTGGAA+GGG | 0.524040 | 1.1:+52024552 | MS.gene49282:CDS |
| TAAGAGATGCTGTTGAAAAG+AGG | 0.535560 | 1.1:+52026513 | MS.gene49282:CDS |
| AAAGAATTCAGCAAGTCAGT+TGG | 0.546638 | 1.1:+52026593 | MS.gene49282:CDS |
| ACAGGCTACCCATCTCCTGC+AGG | 0.556025 | 1.1:-52025617 | None:intergenic |
| TCGTCGCAGGCCCAGAGCAA+GGG | 0.563237 | 1.1:-52025066 | None:intergenic |
| GCCGTGAACACTGTACCTGC+AGG | 0.578786 | 1.1:+52025602 | MS.gene49282:intron |
| ACACTGTACCTGCAGGAGAT+GGG | 0.582432 | 1.1:+52025609 | MS.gene49282:CDS |
| TATTAGTCCAGAACTGAAGA+AGG | 0.582986 | 1.1:+52026410 | MS.gene49282:CDS |
| CGTTAAAGAGTCTGAAACAG+AGG | 0.585640 | 1.1:+52024598 | MS.gene49282:CDS |
| TGGTGGCACTAGTGGTGGAA+TGG | 0.586320 | 1.1:+52024362 | MS.gene49282:CDS |
| TGGAAGCAAGGTCAAAACAG+TGG | 0.587810 | 1.1:+52024382 | MS.gene49282:CDS |
| AGGAACAGAGCAGAGAAGGA+GGG | 0.589982 | 1.1:-52025124 | None:intergenic |
| AAAGAAAGAGGAGTATGAGT+CGG | 0.594381 | 1.1:+52024541 | MS.gene49282:CDS |
| GCCTGTAGAACATGTTGCAG+TGG | 0.595760 | 1.1:+52025634 | MS.gene49282:CDS |
| AGAATTCAGCAAGTCAGTTG+GGG | 0.596182 | 1.1:+52026595 | MS.gene49282:CDS |
| GAGTCGGAGTTGGAAGGGAT+AGG | 0.599821 | 1.1:+52024557 | MS.gene49282:CDS |
| GGAAGCAAGGTCAAAACAGT+GGG | 0.604509 | 1.1:+52024383 | MS.gene49282:CDS |
| AATTACATACTCTTGAGAAG+AGG | 0.608234 | 1.1:+52026543 | MS.gene49282:CDS |
| CATGCAGCAGCAGTGCAAAG+AGG | 0.620098 | 1.1:-52025094 | None:intergenic |
| GTATGAAGAAAATCGACTCA+AGG | 0.625177 | 1.1:+52026634 | MS.gene49282:CDS |
| GGATAAATGAAATCACTGAT+CGG | 0.625816 | 1.1:+52026564 | MS.gene49282:CDS |
| GCAGCAGCAGTGCAAAGAGG+AGG | 0.631357 | 1.1:-52025091 | None:intergenic |
| CTAGTGGTGGAATGGAAGCA+AGG | 0.633127 | 1.1:+52024370 | MS.gene49282:CDS |
| ATGACTGGTGGCACTAGTGG+TGG | 0.639638 | 1.1:+52024357 | MS.gene49282:CDS |
| GCTGTTGAGCTGCATAAGAG+AGG | 0.641175 | 1.1:-52025163 | None:intergenic |
| GTTAAAGAGTCTGAAACAGA+GGG | 0.643343 | 1.1:+52024599 | MS.gene49282:CDS |
| ACAATGACTGGTGGCACTAG+TGG | 0.645142 | 1.1:+52024354 | None:intergenic |
| TGCATAAGAGAGGATACAGA+CGG | 0.652006 | 1.1:-52025153 | None:intergenic |
| AAATCCGGAACAATGACTGG+TGG | 0.676576 | 1.1:+52024345 | None:intergenic |
| TTAAAGAGTCTGAAACAGAG+GGG | 0.771288 | 1.1:+52024600 | MS.gene49282:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATATATATAAAATTT+AGG | + | chr1.1:52024468-52024487 | MS.gene49282:intron | 0.0% |
| !! | TAATAATATAATAATTGTTC+TGG | + | chr1.1:52024700-52024719 | MS.gene49282:intron | 10.0% |
| !! | TATTAATTGATATACATAAA+TGG | + | chr1.1:52025792-52025811 | MS.gene49282:intron | 10.0% |
| !! | AAGTATTAAGATCTAAATAT+GGG | - | chr1.1:52026059-52026078 | None:intergenic | 15.0% |
| !! | AATTAGATATATCAAACAAT+CGG | + | chr1.1:52025527-52025546 | MS.gene49282:intron | 15.0% |
| !! | AGAAGTAAGATAAAATAAAA+GGG | - | chr1.1:52025760-52025779 | None:intergenic | 15.0% |
| !! | TAGAAGTAAGATAAAATAAA+AGG | - | chr1.1:52025761-52025780 | None:intergenic | 15.0% |
| !!! | GGAATATTTGAATTTTATTT+TGG | + | chr1.1:52026303-52026322 | MS.gene49282:intron | 15.0% |
| !! | AATATAAATTGCTAATGATG+TGG | + | chr1.1:52025716-52025735 | MS.gene49282:intron | 20.0% |
| !! | AGTATTAAGATCTAAATATG+GGG | - | chr1.1:52026058-52026077 | None:intergenic | 20.0% |
| !! | ATATAAATTGCTAATGATGT+GGG | + | chr1.1:52025717-52025736 | MS.gene49282:intron | 20.0% |
| !! | GAAGTAAGATAAAATAAAAG+GGG | - | chr1.1:52025759-52025778 | None:intergenic | 20.0% |
| !! | TAAAATTCAAATATTCCAAG+AGG | - | chr1.1:52026300-52026319 | None:intergenic | 20.0% |
| !! | TAAACAATAAGTAACAAGTT+CGG | - | chr1.1:52026482-52026501 | None:intergenic | 20.0% |
| !!! | GAAGTATTAAGATCTAAATA+TGG | - | chr1.1:52026060-52026079 | None:intergenic | 20.0% |
| !!! | GATATTTTAATTTCGAAAGT+TGG | - | chr1.1:52026700-52026719 | None:intergenic | 20.0% |
| ! | AATCAAAACAAAAACACTAG+AGG | - | chr1.1:52025265-52025284 | None:intergenic | 25.0% |
| ! | AGAGATGATTAGGAAAAAAT+GGG | - | chr1.1:52026738-52026757 | None:intergenic | 25.0% |
| ! | ATACTGCTATGAATAAACAA+AGG | - | chr1.1:52026450-52026469 | None:intergenic | 25.0% |
| ! | CACACTTATGATTAATGAAA+TGG | + | chr1.1:52025458-52025477 | MS.gene49282:intron | 25.0% |
| ! | CATTTCATTAATCATAAGTG+TGG | - | chr1.1:52025460-52025479 | None:intergenic | 25.0% |
| ! | TAAACCTAAAATCTTTCCTT+CGG | - | chr1.1:52025214-52025233 | None:intergenic | 25.0% |
| ! | TTAGATCTTAATACTTCACA+GGG | + | chr1.1:52026063-52026082 | MS.gene49282:intron | 25.0% |
| ! | TTGGATTATGACTTTATTGT+TGG | + | chr1.1:52026142-52026161 | MS.gene49282:intron | 25.0% |
| ! | TTTAGATCTTAATACTTCAC+AGG | + | chr1.1:52026062-52026081 | MS.gene49282:intron | 25.0% |
| !! | ACGTTTAATTTCTTCTTTGA+TGG | - | chr1.1:52026391-52026410 | None:intergenic | 25.0% |
| !! | TCTAAAATGAAGAAGCTTAA+CGG | + | chr1.1:52025489-52025508 | MS.gene49282:intron | 25.0% |
| !!! | CTTCTTCATTTTAGAGTTTT+TGG | - | chr1.1:52025484-52025503 | None:intergenic | 25.0% |
| AAAACAAAAACACTAGAGGT+AGG | - | chr1.1:52025261-52025280 | None:intergenic | 30.0% | |
| AAACAAAAACACTAGAGGTA+GGG | - | chr1.1:52025260-52025279 | None:intergenic | 30.0% | |
| AAACCTAAAATCTTTCCTTC+GGG | - | chr1.1:52025213-52025232 | None:intergenic | 30.0% | |
| AATCTGGGAAGATTTCTAAA+TGG | - | chr1.1:52026025-52026044 | None:intergenic | 30.0% | |
| AATTACATACTCTTGAGAAG+AGG | + | chr1.1:52026543-52026562 | MS.gene49282:CDS | 30.0% | |
| AGGATATGTCAAAAAGAAAG+AGG | + | chr1.1:52024529-52024548 | MS.gene49282:intron | 30.0% | |
| ATTAGGAAAAAATGGGAAGA+AGG | - | chr1.1:52026731-52026750 | None:intergenic | 30.0% | |
| ATTTAGAAATCTTCCCAGAT+TGG | + | chr1.1:52026024-52026043 | MS.gene49282:intron | 30.0% | |
| CTCTCCTATGTGATTAAATA+TGG | - | chr1.1:52026113-52026132 | None:intergenic | 30.0% | |
| GAGAAATCACTAATGAAGAA+AGG | - | chr1.1:52026266-52026285 | None:intergenic | 30.0% | |
| GAGAGATGATTAGGAAAAAA+TGG | - | chr1.1:52026739-52026758 | None:intergenic | 30.0% | |
| GGATAAATGAAATCACTGAT+CGG | + | chr1.1:52026564-52026583 | MS.gene49282:CDS | 30.0% | |
| TATGCAATAGAACGAAAACT+CGG | - | chr1.1:52025992-52026011 | None:intergenic | 30.0% | |
| TATGTGTTTCACAATCAGAT+GGG | + | chr1.1:52024834-52024853 | MS.gene49282:intron | 30.0% | |
| TCAATATGCTGAGATTGAAA+AGG | + | chr1.1:52024649-52024668 | MS.gene49282:CDS | 30.0% | |
| TCCTATGTGATTAAATATGG+AGG | - | chr1.1:52026110-52026129 | None:intergenic | 30.0% | |
| TCCTCCATATTTAATCACAT+AGG | + | chr1.1:52026106-52026125 | MS.gene49282:intron | 30.0% | |
| TGGGATTCACAATATAGATT+TGG | - | chr1.1:52025372-52025391 | None:intergenic | 30.0% | |
| TTATGATACTATTCAGTGCT+TGG | + | chr1.1:52026167-52026186 | MS.gene49282:intron | 30.0% | |
| ! | AGCTTGTTTCATTTATTGTG+TGG | + | chr1.1:52024779-52024798 | MS.gene49282:intron | 30.0% |
| ! | GAGAATAATGGAATACTTTC+TGG | + | chr1.1:52024871-52024890 | MS.gene49282:intron | 30.0% |
| ! | GTAAGTATTGTGTAATGCAT+AGG | - | chr1.1:52026784-52026803 | None:intergenic | 30.0% |
| ! | GTTTATCTTCAATGCTTTTC+TGG | - | chr1.1:52026341-52026360 | None:intergenic | 30.0% |
| ! | TTAGGTTTAAAGCGAGAATT+GGG | + | chr1.1:52025225-52025244 | MS.gene49282:intron | 30.0% |
| ! | TTTAGGTTTAAAGCGAGAAT+TGG | + | chr1.1:52025224-52025243 | MS.gene49282:intron | 30.0% |
| !! | AACTTTGCATTCTGTTTTTC+AGG | + | chr1.1:52024509-52024528 | MS.gene49282:intron | 30.0% |
| !! | AAGCTTAACGGATTTAAGAT+TGG | + | chr1.1:52025501-52025520 | MS.gene49282:intron | 30.0% |
| !! | TCAGATTTTAGTCGTGAAAA+GGG | + | chr1.1:52026363-52026382 | MS.gene49282:CDS | 30.0% |
| !! | TTCAATGCTTTTCTGGTAAA+AGG | - | chr1.1:52026334-52026353 | None:intergenic | 30.0% |
| !! | TTCAGATTTTAGTCGTGAAA+AGG | + | chr1.1:52026362-52026381 | MS.gene49282:CDS | 30.0% |
| !!! | GTGTTTTTGTTTTGATTTGC+CGG | + | chr1.1:52025268-52025287 | MS.gene49282:intron | 30.0% |
| !!! | TCTTTTTGTTTTTGCATCTG+TGG | + | chr1.1:52026200-52026219 | MS.gene49282:intron | 30.0% |
| !!! | TGTGGTTTTGTTGAGAATAA+TGG | + | chr1.1:52024859-52024878 | MS.gene49282:intron | 30.0% |
| AAAGAATTCAGCAAGTCAGT+TGG | + | chr1.1:52026593-52026612 | MS.gene49282:CDS | 35.0% | |
| AAGAATTCAGCAAGTCAGTT+GGG | + | chr1.1:52026594-52026613 | MS.gene49282:CDS | 35.0% | |
| ATATTGTGAATCCCAGATAG+TGG | + | chr1.1:52025377-52025396 | MS.gene49282:intron | 35.0% | |
| ATGTGTTTCACAATCAGATG+GGG | + | chr1.1:52024835-52024854 | MS.gene49282:intron | 35.0% | |
| CAATAACAGGAGAGATGATT+AGG | - | chr1.1:52026748-52026767 | None:intergenic | 35.0% | |
| CTAATCATCTCTCCTGTTAT+TGG | + | chr1.1:52026746-52026765 | MS.gene49282:intron | 35.0% | |
| GATCTAAATATGGGGAAATC+AGG | - | chr1.1:52026050-52026069 | None:intergenic | 35.0% | |
| GTATGTGTTTCACAATCAGA+TGG | + | chr1.1:52024833-52024852 | MS.gene49282:intron | 35.0% | |
| GTCACACAAAAAACCTTCAA+AGG | - | chr1.1:52024743-52024762 | None:intergenic | 35.0% | |
| TAAATTGCTAATGATGTGGG+TGG | + | chr1.1:52025720-52025739 | MS.gene49282:intron | 35.0% | |
| TAAGAGATGCTGTTGAAAAG+AGG | + | chr1.1:52026513-52026532 | MS.gene49282:CDS | 35.0% | |
| TACAACAAACAGTGCTTATG+TGG | - | chr1.1:52025862-52025881 | None:intergenic | 35.0% | |
| TATTAGTCCAGAACTGAAGA+AGG | + | chr1.1:52026410-52026429 | MS.gene49282:CDS | 35.0% | |
| TTGTGTTTGCAACCAATAAC+AGG | - | chr1.1:52026761-52026780 | None:intergenic | 35.0% | |
| ! | AAAGAAAGAGGAGTATGAGT+CGG | + | chr1.1:52024541-52024560 | MS.gene49282:CDS | 35.0% |
| ! | AATACTTTCTGGCAAAATCG+TGG | + | chr1.1:52024882-52024901 | MS.gene49282:intron | 35.0% |
| ! | ATACTTTCTGGCAAAATCGT+GGG | + | chr1.1:52024883-52024902 | MS.gene49282:intron | 35.0% |
| ! | GTATGAAGAAAATCGACTCA+AGG | + | chr1.1:52026634-52026653 | MS.gene49282:CDS | 35.0% |
| ! | GTTAAAGAGTCTGAAACAGA+GGG | + | chr1.1:52024599-52024618 | MS.gene49282:CDS | 35.0% |
| ! | TCAAGTTTTCAGAAGATGAC+TGG | + | chr1.1:52024952-52024971 | MS.gene49282:intron | 35.0% |
| ! | TTAAAGAGTCTGAAACAGAG+GGG | + | chr1.1:52024600-52024619 | MS.gene49282:CDS | 35.0% |
| !! | AGATTTTAGTCGTGAAAAGG+GGG | + | chr1.1:52026365-52026384 | MS.gene49282:CDS | 35.0% |
| !! | CAGATTTTAGTCGTGAAAAG+GGG | + | chr1.1:52026364-52026383 | MS.gene49282:CDS | 35.0% |
| AAAACACACCCGAATAGCAT+TGG | - | chr1.1:52025568-52025587 | None:intergenic | 40.0% | |
| AAAATCTTTCCTTCGGGCTT+CGG | - | chr1.1:52025207-52025226 | None:intergenic | 40.0% | |
| AATGTCACCTTCTTCAGTTC+TGG | - | chr1.1:52026420-52026439 | None:intergenic | 40.0% | |
| AGAACTGAAGAAGGTGACAT+TGG | + | chr1.1:52026419-52026438 | MS.gene49282:intron | 40.0% | |
| AGAATTCAGCAAGTCAGTTG+GGG | + | chr1.1:52026595-52026614 | MS.gene49282:CDS | 40.0% | |
| ATAGAACGAAAACTCGGAGA+AGG | - | chr1.1:52025986-52026005 | None:intergenic | 40.0% | |
| CACAAAAAACCTTCAAAGGC+TGG | - | chr1.1:52024739-52024758 | None:intergenic | 40.0% | |
| CTGGGAAGATTTCTAAATGG+TGG | - | chr1.1:52026022-52026041 | None:intergenic | 40.0% | |
| GAAACAGAGGGGAAAAAAAG+TGG | + | chr1.1:52024611-52024630 | MS.gene49282:CDS | 40.0% | |
| GAGTCTGTTACAGAGTATGT+AGG | + | chr1.1:52025892-52025911 | MS.gene49282:intron | 40.0% | |
| TAGAACGAAAACTCGGAGAA+GGG | - | chr1.1:52025985-52026004 | None:intergenic | 40.0% | |
| TGCATAAGAGAGGATACAGA+CGG | - | chr1.1:52025156-52025175 | None:intergenic | 40.0% | |
| TGGGATGACAAGATACTTGA+AGG | + | chr1.1:52024402-52024421 | MS.gene49282:CDS | 40.0% | |
| TGTGTTTCACAATCAGATGG+GGG | + | chr1.1:52024836-52024855 | MS.gene49282:intron | 40.0% | |
| ! | AAACTGCTAAAGCGTTTAGC+AGG | + | chr1.1:52025415-52025434 | MS.gene49282:intron | 40.0% |
| ! | AACTGCTAAAGCGTTTAGCA+GGG | + | chr1.1:52025416-52025435 | MS.gene49282:intron | 40.0% |
| ! | AAGCCCGAAGGAAAGATTTT+AGG | + | chr1.1:52025207-52025226 | MS.gene49282:intron | 40.0% |
| ! | AATGCTATTCGGGTGTGTTT+TGG | + | chr1.1:52025567-52025586 | MS.gene49282:intron | 40.0% |
| ! | CGTTAAAGAGTCTGAAACAG+AGG | + | chr1.1:52024598-52024617 | MS.gene49282:CDS | 40.0% |
| !! | GGCTGGATAAATGCTAGTTT+TGG | + | chr1.1:52026221-52026240 | MS.gene49282:intron | 40.0% |
| !!! | AGTGAACCTGTTTTGAGATC+TGG | + | chr1.1:52024928-52024947 | MS.gene49282:intron | 40.0% |
| !!! | AGTTTTGGCTGGATATGGAT+AGG | + | chr1.1:52026236-52026255 | MS.gene49282:intron | 40.0% |
| !!! | ATGCTAGTTTTGGCTGGATA+TGG | + | chr1.1:52026231-52026250 | MS.gene49282:intron | 40.0% |
| !!! | GGATAAATGCTAGTTTTGGC+TGG | + | chr1.1:52026225-52026244 | MS.gene49282:intron | 40.0% |
| !!! | GTGAACCTGTTTTGAGATCT+GGG | + | chr1.1:52024929-52024948 | MS.gene49282:intron | 40.0% |
| !!! | TTTGTTTTTGCATCTGTGGC+TGG | + | chr1.1:52026204-52026223 | MS.gene49282:intron | 40.0% |
| AAAGCGAGAATTGGGCCATA+TGG | + | chr1.1:52025233-52025252 | MS.gene49282:intron | 45.0% | |
| AAGCGAGAATTGGGCCATAT+GGG | + | chr1.1:52025234-52025253 | MS.gene49282:intron | 45.0% | |
| AGTATGAGTCGGAGTTGGAA+GGG | + | chr1.1:52024552-52024571 | MS.gene49282:CDS | 45.0% | |
| CAAAATCGTGGGATCGAAGA+TGG | + | chr1.1:52024894-52024913 | MS.gene49282:intron | 45.0% | |
| CAGTTCTCTGTAGTCCATCA+CGG | - | chr1.1:52025674-52025693 | None:intergenic | 45.0% | |
| CATAGGAGAGCTTGCACTAT+TGG | + | chr1.1:52026123-52026142 | MS.gene49282:intron | 45.0% | |
| CTTGACCCAGATCTCAAAAC+AGG | - | chr1.1:52024937-52024956 | None:intergenic | 45.0% | |
| GAGAGATTCAGACAGCGAAA+TGG | - | chr1.1:52025047-52025066 | None:intergenic | 45.0% | |
| GATTTGCCGGAGTCTCAATT+AGG | + | chr1.1:52025281-52025300 | MS.gene49282:intron | 45.0% | |
| GGAAGCAAGGTCAAAACAGT+GGG | + | chr1.1:52024383-52024402 | MS.gene49282:CDS | 45.0% | |
| TATAATCATCCGAAGCCCGA+AGG | + | chr1.1:52025195-52025214 | MS.gene49282:intron | 45.0% | |
| TCAAACAATCGGTCCAGTTG+CGG | + | chr1.1:52025538-52025557 | MS.gene49282:intron | 45.0% | |
| TCCACTGCAACATGTTCTAC+AGG | - | chr1.1:52025638-52025657 | None:intergenic | 45.0% | |
| TCTCTGTCTTCTGTTCCTCT+TGG | + | chr1.1:52026282-52026301 | MS.gene49282:intron | 45.0% | |
| TGGAAGCAAGGTCAAAACAG+TGG | + | chr1.1:52024382-52024401 | MS.gene49282:CDS | 45.0% | |
| !! | CAGACAGCGAAATGGACTAA+TGG | - | chr1.1:52025039-52025058 | None:intergenic | 45.0% |
| !!! | ATTCGGGTGTGTTTTGGTTG+TGG | + | chr1.1:52025573-52025592 | MS.gene49282:intron | 45.0% |
| !! | ATTATATTATTATGAAAAAA+TGG | - | chr1.1:52024692-52024711 | None:intergenic | 5.0% |
| AACACTGTACCTGCAGGAGA+TGG | + | chr1.1:52025608-52025627 | MS.gene49282:CDS | 50.0% | |
| ACACTGTACCTGCAGGAGAT+GGG | + | chr1.1:52025609-52025628 | MS.gene49282:CDS | 50.0% | |
| AGAACGAAGACAGCGTGATC+AGG | - | chr1.1:52024994-52025013 | None:intergenic | 50.0% | |
| AGGAACAGAGCAGAGAAGGA+GGG | - | chr1.1:52025127-52025146 | None:intergenic | 50.0% | |
| AGTCAGGAACAGAGCAGAGA+AGG | - | chr1.1:52025131-52025150 | None:intergenic | 50.0% | |
| ATGGGGAAATCAGGCCAATC+TGG | - | chr1.1:52026041-52026060 | None:intergenic | 50.0% | |
| CTGAATCTCTCCCTTGCTCT+GGG | + | chr1.1:52025056-52025075 | MS.gene49282:CDS | 50.0% | |
| GAACGAAGACAGCGTGATCA+GGG | - | chr1.1:52024993-52025012 | None:intergenic | 50.0% | |
| GAGCAGCCTAATTGAGACTC+CGG | - | chr1.1:52025290-52025309 | None:intergenic | 50.0% | |
| GAGTATGAGTCGGAGTTGGA+AGG | + | chr1.1:52024551-52024570 | MS.gene49282:CDS | 50.0% | |
| GCCTGTAGAACATGTTGCAG+TGG | + | chr1.1:52025634-52025653 | MS.gene49282:CDS | 50.0% | |
| GCTGTTGAGCTGCATAAGAG+AGG | - | chr1.1:52025166-52025185 | None:intergenic | 50.0% | |
| TATGCAGCTCAACAGCGCTT+AGG | + | chr1.1:52025170-52025189 | MS.gene49282:CDS | 50.0% | |
| TCCTGCAGGTACAGTGTTCA+CGG | - | chr1.1:52025606-52025625 | None:intergenic | 50.0% | |
| TCGTGGGATCGAAGATGGAA+AGG | + | chr1.1:52024899-52024918 | MS.gene49282:intron | 50.0% | |
| TCTGAATCTCTCCCTTGCTC+TGG | + | chr1.1:52025055-52025074 | MS.gene49282:CDS | 50.0% | |
| TGCGGCACACCAATGCTATT+CGG | + | chr1.1:52025556-52025575 | MS.gene49282:intron | 50.0% | |
| TGGACTAATGGTCAAGCGAG+TGG | - | chr1.1:52025027-52025046 | None:intergenic | 50.0% | |
| TGGGGAAATCAGGCCAATCT+GGG | - | chr1.1:52026040-52026059 | None:intergenic | 50.0% | |
| TTCACAATCAGATGGGGGTG+TGG | + | chr1.1:52024841-52024860 | MS.gene49282:intron | 50.0% | |
| TTTAGCAGGGTAGCTGCTAG+AGG | + | chr1.1:52025429-52025448 | MS.gene49282:intron | 50.0% | |
| ! | AGAGGAGTATGAGTCGGAGT+TGG | + | chr1.1:52024547-52024566 | MS.gene49282:CDS | 50.0% |
| ! | AGCAGTTTTACCGTCTGACG+TGG | - | chr1.1:52025403-52025422 | None:intergenic | 50.0% |
| ! | CTAGTGGTGGAATGGAAGCA+AGG | + | chr1.1:52024370-52024389 | MS.gene49282:CDS | 50.0% |
| ACTACGAGTCTGCTCCGTGA+TGG | + | chr1.1:52025657-52025676 | MS.gene49282:intron | 55.0% | |
| ATGACTGGTGGCACTAGTGG+TGG | + | chr1.1:52024357-52024376 | MS.gene49282:CDS | 55.0% | |
| CACTAGAGGTAGGGCCCATA+TGG | - | chr1.1:52025251-52025270 | None:intergenic | 55.0% | |
| CAGGAACAGAGCAGAGAAGG+AGG | - | chr1.1:52025128-52025147 | None:intergenic | 55.0% | |
| CAGGGTAGCTGCTAGAGGTA+GGG | + | chr1.1:52025434-52025453 | MS.gene49282:intron | 55.0% | |
| CATGCAGCAGCAGTGCAAAG+AGG | - | chr1.1:52025097-52025116 | None:intergenic | 55.0% | |
| GAGGATACAGACGGAGAGTC+AGG | - | chr1.1:52025147-52025166 | None:intergenic | 55.0% | |
| GAGTCGGAGTTGGAAGGGAT+AGG | + | chr1.1:52024557-52024576 | MS.gene49282:CDS | 55.0% | |
| GCGGCACACCAATGCTATTC+GGG | + | chr1.1:52025557-52025576 | MS.gene49282:intron | 55.0% | |
| GTCTGACGTGGCCACTATCT+GGG | - | chr1.1:52025391-52025410 | None:intergenic | 55.0% | |
| ! | CAGATAGTGGCCACGTCAGA+CGG | + | chr1.1:52025390-52025409 | MS.gene49282:intron | 55.0% |
| ! | TGGTGGCACTAGTGGTGGAA+TGG | + | chr1.1:52024362-52024381 | MS.gene49282:CDS | 55.0% |
| !! | TAGCATTGGTGTGCCGCAAC+TGG | - | chr1.1:52025554-52025573 | None:intergenic | 55.0% |
| ACAGGCTACCCATCTCCTGC+AGG | - | chr1.1:52025620-52025639 | None:intergenic | 60.0% | |
| CAAGCTGCGCCAGCCTTTGA+AGG | + | chr1.1:52024727-52024746 | MS.gene49282:intron | 60.0% | |
| CGTCTGACGTGGCCACTATC+TGG | - | chr1.1:52025392-52025411 | None:intergenic | 60.0% | |
| GCAGCAGCAGTGCAAAGAGG+AGG | - | chr1.1:52025094-52025113 | None:intergenic | 60.0% | |
| GCAGGGTAGCTGCTAGAGGT+AGG | + | chr1.1:52025433-52025452 | MS.gene49282:intron | 60.0% | |
| GCCGTGAACACTGTACCTGC+AGG | + | chr1.1:52025602-52025621 | MS.gene49282:intron | 60.0% | |
| !! | CAAAGAGGAGGTGTCGTCGC+AGG | - | chr1.1:52025082-52025101 | None:intergenic | 60.0% |
| TCGTCGCAGGCCCAGAGCAA+GGG | - | chr1.1:52025069-52025088 | None:intergenic | 65.0% | |
| GTCGTCGCAGGCCCAGAGCA+AGG | - | chr1.1:52025070-52025089 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52024357 | 52026834 | 52024357 | ID=MS.gene49282 |
| chr1.1 | mRNA | 52024357 | 52026834 | 52024357 | ID=MS.gene49282.t1;Parent=MS.gene49282 |
| chr1.1 | exon | 52024357 | 52024423 | 52024357 | ID=MS.gene49282.t1.exon1;Parent=MS.gene49282.t1 |
| chr1.1 | CDS | 52024357 | 52024423 | 52024357 | ID=cds.MS.gene49282.t1;Parent=MS.gene49282.t1 |
| chr1.1 | exon | 52024531 | 52024670 | 52024531 | ID=MS.gene49282.t1.exon2;Parent=MS.gene49282.t1 |
| chr1.1 | CDS | 52024531 | 52024670 | 52024531 | ID=cds.MS.gene49282.t1;Parent=MS.gene49282.t1 |
| chr1.1 | exon | 52025043 | 52025191 | 52025043 | ID=MS.gene49282.t1.exon3;Parent=MS.gene49282.t1 |
| chr1.1 | CDS | 52025043 | 52025191 | 52025043 | ID=cds.MS.gene49282.t1;Parent=MS.gene49282.t1 |
| chr1.1 | exon | 52025603 | 52025663 | 52025603 | ID=MS.gene49282.t1.exon4;Parent=MS.gene49282.t1 |
| chr1.1 | CDS | 52025603 | 52025663 | 52025603 | ID=cds.MS.gene49282.t1;Parent=MS.gene49282.t1 |
| chr1.1 | exon | 52026342 | 52026431 | 52026342 | ID=MS.gene49282.t1.exon5;Parent=MS.gene49282.t1 |
| chr1.1 | CDS | 52026342 | 52026431 | 52026342 | ID=cds.MS.gene49282.t1;Parent=MS.gene49282.t1 |
| chr1.1 | exon | 52026512 | 52026720 | 52026512 | ID=MS.gene49282.t1.exon6;Parent=MS.gene49282.t1 |
| chr1.1 | CDS | 52026512 | 52026720 | 52026512 | ID=cds.MS.gene49282.t1;Parent=MS.gene49282.t1 |
| chr1.1 | exon | 52026825 | 52026834 | 52026825 | ID=MS.gene49282.t1.exon7;Parent=MS.gene49282.t1 |
| chr1.1 | CDS | 52026825 | 52026834 | 52026825 | ID=cds.MS.gene49282.t1;Parent=MS.gene49282.t1 |
| Gene Sequence |
| Protein sequence |
