AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49853

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49853.t1 MTR_2g089670 81.741 471 78 2 1 471 21 483 0.0 766
MS.gene49853.t1 MTR_2g089765 75.732 478 103 7 2 471 16 488 0.0 727
MS.gene49853.t1 MTR_8g012750 65.353 482 145 13 2 469 3 476 0.0 588
MS.gene49853.t1 MTR_2g089665 63.946 441 52 4 1 440 1 335 0.0 531
MS.gene49853.t1 MTR_7g015860 44.536 485 223 12 2 467 5 462 2.68e-124 370
MS.gene49853.t1 MTR_3g028210 36.722 482 270 11 1 468 7 467 1.19e-93 291
MS.gene49853.t1 MTR_7g014330 38.557 485 241 15 1 461 1 452 3.39e-90 282
MS.gene49853.t1 MTR_2g089650 36.743 479 264 14 2 465 9 463 8.49e-90 281
MS.gene49853.t1 MTR_6g015850 36.478 477 269 10 2 468 8 460 9.69e-87 273
MS.gene49853.t1 MTR_6g015815 36.975 476 269 10 3 468 9 463 5.03e-86 271
MS.gene49853.t1 MTR_7g014230 37.448 478 252 13 3 461 5 454 8.45e-84 266
MS.gene49853.t1 MTR_2g089755 35.760 467 246 16 25 465 37 475 8.58e-82 261
MS.gene49853.t1 MTR_6g015830 35.430 477 277 11 2 468 8 463 3.00e-80 256
MS.gene49853.t1 MTR_7g014250 35.510 490 259 15 1 466 1 457 3.61e-80 256
MS.gene49853.t1 MTR_3g087640 35.052 485 271 15 3 465 10 472 2.53e-79 254
MS.gene49853.t1 MTR_2g089735 34.842 442 254 11 39 465 39 461 1.48e-77 249
MS.gene49853.t1 MTR_7g014200 33.402 488 277 16 2 467 9 470 3.61e-75 244
MS.gene49853.t1 MTR_7g014160 34.156 486 277 14 2 465 9 473 1.72e-74 242
MS.gene49853.t1 MTR_6g015320 33.476 466 281 9 7 465 11 454 2.81e-74 241
MS.gene49853.t1 MTR_6g015315 34.954 432 258 8 39 465 39 452 3.66e-71 233
MS.gene49853.t1 MTR_7g014610 33.197 488 282 14 2 465 8 475 4.19e-69 228
MS.gene49853.t1 MTR_7g013850 31.646 474 267 17 26 465 30 480 1.26e-61 208
MS.gene49853.t1 MTR_7g014620 31.957 460 260 12 21 465 11 432 8.24e-56 192
MS.gene49853.t1 MTR_7g014360 31.095 402 226 10 71 461 21 382 8.40e-52 180
MS.gene49853.t1 MTR_3g435300 36.111 288 153 11 3 279 4 271 9.65e-42 150
MS.gene49853.t1 MTR_2g089745 75.309 81 20 0 391 471 3 83 5.71e-33 120
MS.gene49853.t1 MTR_6g015310 28.346 381 192 10 74 443 23 333 9.43e-33 127
MS.gene49853.t1 MTR_7g014670 35.602 191 120 2 276 465 71 259 1.88e-31 122
MS.gene49853.t1 MTR_7g014630 32.414 290 162 11 2 276 9 279 2.74e-31 124
MS.gene49853.t1 MTR_7g014310 28.446 341 179 10 110 448 29 306 1.80e-30 120
MS.gene49853.t1 MTR_7g014180 37.989 179 96 6 2 176 7 174 3.77e-26 104
MS.gene49853.t1 MTR_8g041770 27.543 403 246 13 22 417 27 390 2.77e-23 102
MS.gene49853.t1 MTR_4g022670 25.472 424 273 16 2 417 4 392 1.53e-19 91.3
MS.gene49853.t1 MTR_3g101900 23.195 457 288 16 25 459 30 445 3.98e-19 90.1
MS.gene49853.t1 MTR_4g022720 25.971 412 249 13 19 417 18 386 5.66e-19 89.4
MS.gene49853.t1 MTR_7g026860 25.366 410 257 14 19 417 18 389 8.88e-18 85.9
MS.gene49853.t1 MTR_7g014210 39.130 115 68 2 323 435 24 138 8.17e-17 78.2
MS.gene49853.t1 MTR_3g088420 26.415 424 238 17 14 417 15 384 9.15e-17 82.8
MS.gene49853.t1 MTR_4g022800 24.586 423 279 14 2 417 4 393 1.44e-16 82.0
MS.gene49853.t1 MTR_6g045553 25.053 475 263 18 25 454 35 461 2.70e-16 81.6
MS.gene49853.t1 MTR_7g085930 23.952 501 307 17 1 468 5 464 1.10e-15 79.7
MS.gene49853.t1 MTR_3g101930 23.810 420 273 16 48 454 56 441 3.13e-15 78.2
MS.gene49853.t1 MTR_3g101970 22.645 499 288 21 2 469 6 437 3.32e-15 77.8
MS.gene49853.t1 MTR_8g079710 23.467 375 228 12 62 417 59 393 4.02e-15 77.8
MS.gene49853.t1 MTR_4g094828 22.512 422 254 18 21 417 25 398 7.84e-15 77.0
MS.gene49853.t1 MTR_7g014340 59.155 71 27 2 1 70 1 70 8.99e-15 70.5
MS.gene49853.t1 MTR_7g014205 38.136 118 53 3 321 433 18 120 9.10e-15 71.2
MS.gene49853.t1 MTR_7g114560 22.135 384 247 13 42 416 47 387 1.36e-14 76.3
MS.gene49853.t1 MTR_3g435290 34.167 120 76 2 346 465 1 117 1.69e-14 70.5
MS.gene49853.t1 MTR_8g096530 24.760 416 262 15 61 469 58 429 6.33e-14 73.9
MS.gene49853.t1 MTR_7g014220 59.375 64 25 1 17 80 10 72 2.28e-13 65.9
MS.gene49853.t1 MTR_8g079970 22.436 468 301 14 2 457 3 420 2.57e-13 72.0
MS.gene49853.t1 MTR_3g101960 23.124 493 277 22 2 454 6 436 4.35e-13 71.6
MS.gene49853.t1 MTR_7g114550 22.328 421 265 15 9 416 16 387 1.46e-12 69.7
MS.gene49853.t1 MTR_7g085990 23.197 513 300 17 1 470 1 462 5.05e-12 68.2
MS.gene49853.t1 MTR_2g007880 20.920 435 272 13 44 457 56 439 5.89e-12 67.8
MS.gene49853.t1 MTR_4g022760 24.932 369 228 13 19 377 18 347 1.04e-11 67.0
MS.gene49853.t1 MTR_7g114520 22.353 425 280 16 1 416 7 390 2.04e-11 66.2
MS.gene49853.t1 MTR_3g049150 25.939 293 175 10 145 417 129 399 9.47e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49853.t1 AT1G03940 38.622 479 255 14 3 465 9 464 3.95e-103 316
MS.gene49853.t1 AT1G03495 39.377 353 185 12 4 347 10 342 6.97e-70 226
MS.gene49853.t1 AT3G29670 33.403 476 276 16 2 465 3 449 5.38e-69 227
MS.gene49853.t1 AT5G61160 31.667 480 284 13 2 467 3 452 2.06e-62 210
MS.gene49853.t1 AT5G39090 34.382 477 256 19 2 460 5 442 3.13e-61 206
MS.gene49853.t1 AT3G29680 31.992 472 278 12 2 461 3 443 3.02e-60 204
MS.gene49853.t1 AT3G29635 31.303 476 291 13 2 465 3 454 1.48e-58 200
MS.gene49853.t1 AT3G29590 32.143 476 268 17 2 461 8 444 7.07e-57 195
MS.gene49853.t1 AT5G39080 30.658 486 286 18 2 465 5 461 5.47e-56 193
MS.gene49853.t1 AT5G39050 30.021 483 294 14 2 465 10 467 2.14e-51 181
MS.gene49853.t1 AT5G42830 24.724 453 285 16 14 449 17 430 4.05e-18 87.0
MS.gene49853.t1 AT3G48720 22.430 428 289 9 39 462 41 429 1.16e-17 85.5
MS.gene49853.t1 AT3G29690 29.605 152 101 2 311 461 28 174 1.91e-16 77.8
MS.gene49853.t1 AT2G19070 23.650 389 255 12 44 416 40 402 1.94e-16 82.0
MS.gene49853.t1 AT3G50280 25.571 438 249 19 5 417 7 392 3.58e-16 80.9
MS.gene49853.t1 AT5G67150 25.118 422 275 19 4 417 7 395 1.66e-15 79.0
MS.gene49853.t1 AT5G41040 21.925 374 254 11 56 425 63 402 1.13e-13 73.2
MS.gene49853.t1 AT5G41040 21.925 374 254 11 56 425 79 418 1.31e-13 73.2
MS.gene49853.t1 AT1G31490 23.724 392 231 14 43 417 43 383 1.16e-12 70.1

Find 98 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATTTCATGAAATTT+TGG 0.059044 2.3:-11379409 MS.gene49853:CDS
GGAGGGGTGTTATGGGAATT+TGG 0.229278 2.3:+11379686 None:intergenic
TCACTTTCTTCGACATTTCA+TGG 0.242024 2.3:-11379862 MS.gene49853:CDS
TCTAGTCTACTTCATATTCT+TGG 0.285884 2.3:-11379000 MS.gene49853:CDS
ATTCACAAGATGCTCTAAAT+TGG 0.287826 2.3:-11379583 MS.gene49853:CDS
AACTCGATGGTAGTGGTTGC+TGG 0.302599 2.3:-11378756 MS.gene49853:CDS
GATGTTTATGAGACTGATTT+TGG 0.310385 2.3:-11378720 MS.gene49853:CDS
TGCACTGCATCAGATTTCTT+TGG 0.315346 2.3:+11378687 None:intergenic
ATGATGAGGTTGGAGGAAAA+AGG 0.329263 2.3:+11379713 None:intergenic
TAAGCACTCCATCTCTTTCA+TGG 0.346789 2.3:+11379303 None:intergenic
TTGTAACATGTTCCTTGATT+TGG 0.350808 2.3:-11379073 MS.gene49853:CDS
GTATATAAGGAGGGGTGTTA+TGG 0.354673 2.3:+11379678 None:intergenic
TTTAAGAGTGATGATTTGTT+AGG 0.354935 2.3:-11378825 MS.gene49853:CDS
TCTTGTAAGTTGGTGAGTTT+AGG 0.362354 2.3:+11379266 None:intergenic
TTTAATGATTCACTATAATC+AGG 0.363977 2.3:+11378786 None:intergenic
AGGTGGAATTGAGGTTGGTT+TGG 0.381023 2.3:-11378616 MS.gene49853:CDS
CAGATAGAGAAGCCAGAGTT+TGG 0.386262 2.3:+11379470 None:intergenic
GAAGAAGTGTTGGAGGGTTA+AGG 0.387404 2.3:+11379736 None:intergenic
GTATGAGGTGAAGGCAAGTT+AGG 0.400483 2.3:+11379548 None:intergenic
GGTTGGTGATGGAAGTGAAT+TGG 0.400909 2.3:+11379895 None:intergenic
GTTGGTGATGGAAGTGAATT+GGG 0.408787 2.3:+11379896 None:intergenic
TATATAAGGAGGGGTGTTAT+GGG 0.421407 2.3:+11379679 None:intergenic
ATTTGGAGGGATGATGAGGT+TGG 0.424629 2.3:+11379703 None:intergenic
GGAAAGTGAGTGTTTGAGAA+TGG 0.424878 2.3:+11379757 None:intergenic
ATCTTGTATTTCTTGTAAGT+TGG 0.431916 2.3:+11379256 None:intergenic
GAATGGGAAGTGTTGTTTGT+AGG 0.432621 2.3:+11379774 None:intergenic
GAAGCCAGAGTTTGGTAGAA+TGG 0.432626 2.3:+11379478 None:intergenic
TCATCAAGGTAACGTATATA+AGG 0.436544 2.3:+11379665 None:intergenic
AAACTAAAGAGATGGGTTGT+TGG 0.438015 2.3:-11379134 MS.gene49853:CDS
TCTCTTTCTGATTGTAGAGA+TGG 0.439448 2.3:-11378642 MS.gene49853:CDS
GTTGAAGTCTGCTGAAGATT+CGG 0.441740 2.3:+11379619 None:intergenic
GATGAGTTGGATGAGGAAAA+TGG 0.445046 2.3:+11379801 None:intergenic
ATAAAGAGAGATGAGTTAGT+TGG 0.446078 2.3:-11378900 MS.gene49853:CDS
GTCTCATAAACATCAAGTTT+AGG 0.448315 2.3:+11378729 None:intergenic
AAAGTGAGAGGGAGAGTGGT+TGG 0.459506 2.3:+11379878 None:intergenic
TACCATACAAAACCAAATCA+AGG 0.462671 2.3:+11379061 None:intergenic
GGTGGAGGTGGAATTGAGGT+TGG 0.463005 2.3:-11378621 MS.gene49853:CDS
GAAAGTGAGTGTTTGAGAAT+GGG 0.469129 2.3:+11379758 None:intergenic
TTGGTGAGTTTAGGAGCCGT+TGG 0.469411 2.3:+11379275 None:intergenic
CTTTCTGATTGTAGAGATGG+TGG 0.471103 2.3:-11378639 MS.gene49853:CDS
GTTGTTCTTTATAGATATTG+AGG 0.475545 2.3:+11378565 None:intergenic
GCAGTGCATATTGATTCGTT+CGG 0.475920 2.3:-11378672 MS.gene49853:CDS
GAAGAAAGTGAGAGGGAGAG+TGG 0.476197 2.3:+11379874 None:intergenic
AGAGGGAGAGTGGTTGGTGA+TGG 0.482203 2.3:+11379884 None:intergenic
CAACAACACAGTTATGTTGA+AGG 0.488066 2.3:-11379948 None:intergenic
GGGAATTTGGAGGGATGATG+AGG 0.494796 2.3:+11379699 None:intergenic
GATGGAAGTGAATTGGGTGG+TGG 0.495893 2.3:+11379902 None:intergenic
GGGATTGTTGTGGCTTCAAA+CGG 0.500064 2.3:-11378870 MS.gene49853:CDS
TACATGTATCGTTCCGCTCA+TGG 0.500067 2.3:-11379513 MS.gene49853:CDS
TGGAGGGATGATGAGGTTGG+AGG 0.507278 2.3:+11379706 None:intergenic
GTTTGTAGGAAGTGATGAGT+TGG 0.516421 2.3:+11379788 None:intergenic
TGGTAGAATGGTGATTTGAA+TGG 0.518937 2.3:+11379490 None:intergenic
GGGGTGTTATGGGAATTTGG+AGG 0.522455 2.3:+11379689 None:intergenic
TGGTGAGTTTAGGAGCCGTT+GGG 0.523739 2.3:+11379276 None:intergenic
ACCACTACCATCGAGTTACC+TGG 0.531940 2.3:+11378762 None:intergenic
AAGCACTCCATCTCTTTCAT+GGG 0.531994 2.3:+11379304 None:intergenic
AAGTTCAGAAACTAAAGAGA+TGG 0.535160 2.3:-11379142 MS.gene49853:CDS
GATTGTAGAGATGGTGGAGG+TGG 0.541712 2.3:-11378633 MS.gene49853:CDS
TACAACCATGTCGCTGCAGA+CGG 0.546173 2.3:-11379440 MS.gene49853:CDS
AGGTTGGTTTGGTTCTTGAG+AGG 0.549471 2.3:-11378605 MS.gene49853:CDS
TGAAGATTCGGCAACGGTGA+AGG 0.551527 2.3:+11379631 None:intergenic
ACTCGATGGTAGTGGTTGCT+GGG 0.554609 2.3:-11378755 MS.gene49853:CDS
ACCAGGTAACTCGATGGTAG+TGG 0.558706 2.3:-11378763 MS.gene49853:CDS
CTTCCTTCCCATGAAAGAGA+TGG 0.561446 2.3:-11379311 MS.gene49853:CDS
AGTTCAGAAACTAAAGAGAT+GGG 0.565348 2.3:-11379141 MS.gene49853:CDS
ATCACCATTCTACCAAACTC+TGG 0.574194 2.3:-11379482 MS.gene49853:CDS
CAAGGTAACGTATATAAGGA+GGG 0.577627 2.3:+11379669 None:intergenic
ACTCCATCTCTTTCATGGGA+AGG 0.579240 2.3:+11379308 None:intergenic
AATTGGGTGGTGGTGCAACT+TGG 0.579309 2.3:+11379912 None:intergenic
AGATGGTGGAGGTGGAATTG+AGG 0.584627 2.3:-11378625 MS.gene49853:CDS
AGGAAGTGATGAGTTGGATG+AGG 0.585446 2.3:+11379794 None:intergenic
CAAAGTAAACGTGATTGCAC+TGG 0.586639 2.3:-11379029 MS.gene49853:CDS
GGGTGTTATGGGAATTTGGA+GGG 0.588819 2.3:+11379690 None:intergenic
TCAAGGTAACGTATATAAGG+AGG 0.593641 2.3:+11379668 None:intergenic
TGCATCTCGAACGAGACTTG+TGG 0.601182 2.3:+11379211 None:intergenic
TCACCTCATACAGAACAAAA+CGG 0.603095 2.3:-11379536 MS.gene49853:CDS
GTCTGCTGAAGATTCGGCAA+CGG 0.604958 2.3:+11379625 None:intergenic
CAGCGACATGGTTGTAAGTG+AGG 0.605491 2.3:+11379447 None:intergenic
AAAAGGGAAGAAGTGTTGGA+GGG 0.615109 2.3:+11379730 None:intergenic
AATATCTATAAAGAACAACT+TGG 0.616710 2.3:-11378561 MS.gene49853:CDS
GGTGATGGAAGTGAATTGGG+TGG 0.622854 2.3:+11379899 None:intergenic
AGATGCAGCTTACGCTAACA+AGG 0.622869 2.3:-11379195 MS.gene49853:CDS
TCTGATTGTAGAGATGGTGG+AGG 0.625713 2.3:-11378636 MS.gene49853:CDS
TCATGGGAAGGAAGATCAAG+AGG 0.626174 2.3:+11379320 None:intergenic
TTGTCTTGCATCTTATGCTG+TGG 0.635139 2.3:-11378925 MS.gene49853:CDS
AAATGTCGAAGAAAGTGAGA+GGG 0.639421 2.3:+11379867 None:intergenic
GAAATGTCGAAGAAAGTGAG+AGG 0.646541 2.3:+11379866 None:intergenic
ATTAAAACCAGGTAACTCGA+TGG 0.652136 2.3:-11378769 MS.gene49853:CDS
AAGGCAAGTTAGGAACAAGA+TGG 0.656225 2.3:+11379558 None:intergenic
AGGAGATAGAGTCTTCATCA+AGG 0.656629 2.3:+11379651 None:intergenic
TATAGTGAATCATTAAAACC+AGG 0.671327 2.3:-11378780 MS.gene49853:CDS
TGGAGTGCTTAAACACCCAA+CGG 0.672231 2.3:-11379291 MS.gene49853:CDS
TGGGAAGGAAGATCAAGAGG+CGG 0.672634 2.3:+11379323 None:intergenic
AAGGTAACGTATATAAGGAG+GGG 0.677863 2.3:+11379670 None:intergenic
CATCTTGTGAATCAGATACG+AGG 0.681815 2.3:+11379594 None:intergenic
GAAGAAGATACGTTTAACAG+CGG 0.689203 2.3:+11379826 None:intergenic
GTGATTTGAATGGCCATGAG+CGG 0.699647 2.3:+11379500 None:intergenic
ACAACAAAAGTTGACATGTG+CGG 0.758347 2.3:+11379092 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCTATAAAGAACAACT+TGG - chr2.3:11379916-11379935 MS.gene49853:CDS 20.0%
!! TTTAATGATTCACTATAATC+AGG + chr2.3:11379694-11379713 None:intergenic 20.0%
!!! AGAAATACAAGATTTTGTTT+TGG - chr2.3:11379231-11379250 MS.gene49853:CDS 20.0%
!!! CAATTTCCAAAATAAGTTTT+TGG + chr2.3:11379535-11379554 None:intergenic 20.0%
!!! TCATCATTTCATGAAATTTT+GGG - chr2.3:11379069-11379088 MS.gene49853:CDS 20.0%
!!! TCATTACCAAAAACTTATTT+TGG - chr2.3:11379526-11379545 MS.gene49853:CDS 20.0%
!!! TTCATCATTTCATGAAATTT+TGG - chr2.3:11379068-11379087 MS.gene49853:CDS 20.0%
! ATCTTGTATTTCTTGTAAGT+TGG + chr2.3:11379224-11379243 None:intergenic 25.0%
! ATGAGTTAGTTGGAAAAAAT+GGG - chr2.3:11379587-11379606 MS.gene49853:CDS 25.0%
! GTTGTTCTTTATAGATATTG+AGG + chr2.3:11379915-11379934 None:intergenic 25.0%
! TATAGTGAATCATTAAAACC+AGG - chr2.3:11379697-11379716 MS.gene49853:CDS 25.0%
!!! GTTGTTATTGTTTTTTGCTA+TGG + chr2.3:11379110-11379129 None:intergenic 25.0%
!!! TTTAAGAGTGATGATTTGTT+AGG - chr2.3:11379652-11379671 MS.gene49853:CDS 25.0%
AAGTTCAGAAACTAAAGAGA+TGG - chr2.3:11379335-11379354 MS.gene49853:CDS 30.0%
AGTTCAGAAACTAAAGAGAT+GGG - chr2.3:11379336-11379355 MS.gene49853:CDS 30.0%
ATAAAGAGAGATGAGTTAGT+TGG - chr2.3:11379577-11379596 MS.gene49853:CDS 30.0%
GATGAGTTAGTTGGAAAAAA+TGG - chr2.3:11379586-11379605 MS.gene49853:CDS 30.0%
GTCTCATAAACATCAAGTTT+AGG + chr2.3:11379751-11379770 None:intergenic 30.0%
TACCATACAAAACCAAATCA+AGG + chr2.3:11379419-11379438 None:intergenic 30.0%
TCATCAAGGTAACGTATATA+AGG + chr2.3:11378815-11378834 None:intergenic 30.0%
TCTAGTCTACTTCATATTCT+TGG - chr2.3:11379477-11379496 MS.gene49853:CDS 30.0%
TTGTAACATGTTCCTTGATT+TGG - chr2.3:11379404-11379423 MS.gene49853:CDS 30.0%
! ATTCACAAGATGCTCTAAAT+TGG - chr2.3:11378894-11378913 MS.gene49853:CDS 30.0%
!! GATGTTTATGAGACTGATTT+TGG - chr2.3:11379757-11379776 MS.gene49853:CDS 30.0%
!! TTATGAGACTGATTTTGGAT+GGG - chr2.3:11379762-11379781 MS.gene49853:CDS 30.0%
!! TTTATGAGACTGATTTTGGA+TGG - chr2.3:11379761-11379780 MS.gene49853:CDS 30.0%
!!! AGATTTTGTTTTGGAAGTCA+TGG - chr2.3:11379240-11379259 MS.gene49853:CDS 30.0%
!!! TTCCTTGATTTGGTTTTGTA+TGG - chr2.3:11379414-11379433 MS.gene49853:CDS 30.0%
AAATGTCGAAGAAAGTGAGA+GGG + chr2.3:11378613-11378632 None:intergenic 35.0%
AAGGTAACGTATATAAGGAG+GGG + chr2.3:11378810-11378829 None:intergenic 35.0%
ACAACAAAAGTTGACATGTG+CGG + chr2.3:11379388-11379407 None:intergenic 35.0%
ATTAAAACCAGGTAACTCGA+TGG - chr2.3:11379708-11379727 MS.gene49853:CDS 35.0%
CAAGGTAACGTATATAAGGA+GGG + chr2.3:11378811-11378830 None:intergenic 35.0%
GAAAGTGAGTGTTTGAGAAT+GGG + chr2.3:11378722-11378741 None:intergenic 35.0%
GAAGAAGATACGTTTAACAG+CGG + chr2.3:11378654-11378673 None:intergenic 35.0%
TCAAGGTAACGTATATAAGG+AGG + chr2.3:11378812-11378831 None:intergenic 35.0%
TCACCTCATACAGAACAAAA+CGG - chr2.3:11378941-11378960 MS.gene49853:CDS 35.0%
TCACTTTCTTCGACATTTCA+TGG - chr2.3:11378615-11378634 MS.gene49853:CDS 35.0%
TCTCTTTCTGATTGTAGAGA+TGG - chr2.3:11379835-11379854 MS.gene49853:CDS 35.0%
TGGAAAAAATGGGATTGTTG+TGG - chr2.3:11379597-11379616 MS.gene49853:CDS 35.0%
TGGTAGAATGGTGATTTGAA+TGG + chr2.3:11378990-11379009 None:intergenic 35.0%
! TTTTGTTCTGTATGAGGTGA+AGG + chr2.3:11378941-11378960 None:intergenic 35.0%
!! AAACTAAAGAGATGGGTTGT+TGG - chr2.3:11379343-11379362 MS.gene49853:CDS 35.0%
!! TATATAAGGAGGGGTGTTAT+GGG + chr2.3:11378801-11378820 None:intergenic 35.0%
!! TATGAGACTGATTTTGGATG+GGG - chr2.3:11379763-11379782 MS.gene49853:CDS 35.0%
!! TCTTGTAAGTTGGTGAGTTT+AGG + chr2.3:11379214-11379233 None:intergenic 35.0%
AAGCACTCCATCTCTTTCAT+GGG + chr2.3:11379176-11379195 None:intergenic 40.0%
AAGGCAAGTTAGGAACAAGA+TGG + chr2.3:11378922-11378941 None:intergenic 40.0%
AGGAGATAGAGTCTTCATCA+AGG + chr2.3:11378829-11378848 None:intergenic 40.0%
ATCACCATTCTACCAAACTC+TGG - chr2.3:11378995-11379014 MS.gene49853:CDS 40.0%
ATGATGAGGTTGGAGGAAAA+AGG + chr2.3:11378767-11378786 None:intergenic 40.0%
CAAAGTAAACGTGATTGCAC+TGG - chr2.3:11379448-11379467 MS.gene49853:CDS 40.0%
CATCTTGTGAATCAGATACG+AGG + chr2.3:11378886-11378905 None:intergenic 40.0%
CTTTCTGATTGTAGAGATGG+TGG - chr2.3:11379838-11379857 MS.gene49853:CDS 40.0%
GAAATGTCGAAGAAAGTGAG+AGG + chr2.3:11378614-11378633 None:intergenic 40.0%
GGAAAGTGAGTGTTTGAGAA+TGG + chr2.3:11378723-11378742 None:intergenic 40.0%
GTTGAAGTCTGCTGAAGATT+CGG + chr2.3:11378861-11378880 None:intergenic 40.0%
GTTTGTAGGAAGTGATGAGT+TGG + chr2.3:11378692-11378711 None:intergenic 40.0%
TAAGCACTCCATCTCTTTCA+TGG + chr2.3:11379177-11379196 None:intergenic 40.0%
TGATGAGGTTGGAGGAAAAA+GGG + chr2.3:11378766-11378785 None:intergenic 40.0%
TGCACTGCATCAGATTTCTT+TGG + chr2.3:11379793-11379812 None:intergenic 40.0%
TTGTCTTGCATCTTATGCTG+TGG - chr2.3:11379552-11379571 MS.gene49853:CDS 40.0%
! AGGAAAAAGGGAAGAAGTGT+TGG + chr2.3:11378754-11378773 None:intergenic 40.0%
! GATGAGTTGGATGAGGAAAA+TGG + chr2.3:11378679-11378698 None:intergenic 40.0%
!! AAAAAGGGAAGAAGTGTTGG+AGG + chr2.3:11378751-11378770 None:intergenic 40.0%
!! AAAAGGGAAGAAGTGTTGGA+GGG + chr2.3:11378750-11378769 None:intergenic 40.0%
!! GAATGGGAAGTGTTGTTTGT+AGG + chr2.3:11378706-11378725 None:intergenic 40.0%
!! GCAGTGCATATTGATTCGTT+CGG - chr2.3:11379805-11379824 MS.gene49853:CDS 40.0%
!! GTACCGTTTTGTTCTGTATG+AGG + chr2.3:11378947-11378966 None:intergenic 40.0%
!! GTATATAAGGAGGGGTGTTA+TGG + chr2.3:11378802-11378821 None:intergenic 40.0%
!! GTTGGTGATGGAAGTGAATT+GGG + chr2.3:11378584-11378603 None:intergenic 40.0%
!! TGCTATGGCTTTTGAAAGAG+AGG + chr2.3:11379095-11379114 None:intergenic 40.0%
ACTCCATCTCTTTCATGGGA+AGG + chr2.3:11379172-11379191 None:intergenic 45.0%
AGATGCAGCTTACGCTAACA+AGG - chr2.3:11379282-11379301 MS.gene49853:CDS 45.0%
ATTTGGAGGGATGATGAGGT+TGG + chr2.3:11378777-11378796 None:intergenic 45.0%
CAGATAGAGAAGCCAGAGTT+TGG + chr2.3:11379010-11379029 None:intergenic 45.0%
CTTCCTTCCCATGAAAGAGA+TGG - chr2.3:11379166-11379185 MS.gene49853:CDS 45.0%
GAAGCCAGAGTTTGGTAGAA+TGG + chr2.3:11379002-11379021 None:intergenic 45.0%
GGGATTGTTGTGGCTTCAAA+CGG - chr2.3:11379607-11379626 MS.gene49853:CDS 45.0%
GTATGAGGTGAAGGCAAGTT+AGG + chr2.3:11378932-11378951 None:intergenic 45.0%
GTGATTTGAATGGCCATGAG+CGG + chr2.3:11378980-11378999 None:intergenic 45.0%
TACATGTATCGTTCCGCTCA+TGG - chr2.3:11378964-11378983 MS.gene49853:CDS 45.0%
TCATGGGAAGGAAGATCAAG+AGG + chr2.3:11379160-11379179 None:intergenic 45.0%
! AGGAAGTGATGAGTTGGATG+AGG + chr2.3:11378686-11378705 None:intergenic 45.0%
! AGGTGGAATTGAGGTTGGTT+TGG - chr2.3:11379861-11379880 MS.gene49853:CDS 45.0%
! GGGTGTTATGGGAATTTGGA+GGG + chr2.3:11378790-11378809 None:intergenic 45.0%
! TCTGATTGTAGAGATGGTGG+AGG - chr2.3:11379841-11379860 MS.gene49853:CDS 45.0%
! TGGAGTGCTTAAACACCCAA+CGG - chr2.3:11379186-11379205 MS.gene49853:CDS 45.0%
!! AGGTTGGTTTGGTTCTTGAG+AGG - chr2.3:11379872-11379891 MS.gene49853:CDS 45.0%
!! GAAGAAGTGTTGGAGGGTTA+AGG + chr2.3:11378744-11378763 None:intergenic 45.0%
!! GGTTGGTGATGGAAGTGAAT+TGG + chr2.3:11378585-11378604 None:intergenic 45.0%
AAAGTGAGAGGGAGAGTGGT+TGG + chr2.3:11378602-11378621 None:intergenic 50.0%
ACCACTACCATCGAGTTACC+TGG + chr2.3:11379718-11379737 None:intergenic 50.0%
ACCAGGTAACTCGATGGTAG+TGG - chr2.3:11379714-11379733 MS.gene49853:CDS 50.0%
CAGCGACATGGTTGTAAGTG+AGG + chr2.3:11379033-11379052 None:intergenic 50.0%
GAAGAAAGTGAGAGGGAGAG+TGG + chr2.3:11378606-11378625 None:intergenic 50.0%
GATGGAAGTGAATTGGGTGG+TGG + chr2.3:11378578-11378597 None:intergenic 50.0%
GGGAATTTGGAGGGATGATG+AGG + chr2.3:11378781-11378800 None:intergenic 50.0%
GTCTGCTGAAGATTCGGCAA+CGG + chr2.3:11378855-11378874 None:intergenic 50.0%
TACAACCATGTCGCTGCAGA+CGG - chr2.3:11379037-11379056 MS.gene49853:CDS 50.0%
TGAAGATTCGGCAACGGTGA+AGG + chr2.3:11378849-11378868 None:intergenic 50.0%
TGCATCTCGAACGAGACTTG+TGG + chr2.3:11379269-11379288 None:intergenic 50.0%
TGGGAAGGAAGATCAAGAGG+CGG + chr2.3:11379157-11379176 None:intergenic 50.0%
TGGTGAGTTTAGGAGCCGTT+GGG + chr2.3:11379204-11379223 None:intergenic 50.0%
TTGGTGAGTTTAGGAGCCGT+TGG + chr2.3:11379205-11379224 None:intergenic 50.0%
! AATTGGGTGGTGGTGCAACT+TGG + chr2.3:11378568-11378587 None:intergenic 50.0%
! ATTTTCCGTCTGCAGCGACA+TGG + chr2.3:11379045-11379064 None:intergenic 50.0%
! GGGGTGTTATGGGAATTTGG+AGG + chr2.3:11378791-11378810 None:intergenic 50.0%
!! AACTCGATGGTAGTGGTTGC+TGG - chr2.3:11379721-11379740 MS.gene49853:CDS 50.0%
!! ACTCGATGGTAGTGGTTGCT+GGG - chr2.3:11379722-11379741 MS.gene49853:CDS 50.0%
!! AGATGGTGGAGGTGGAATTG+AGG - chr2.3:11379852-11379871 MS.gene49853:CDS 50.0%
!! GATTGTAGAGATGGTGGAGG+TGG - chr2.3:11379844-11379863 MS.gene49853:CDS 50.0%
!! GGAGGGGTGTTATGGGAATT+TGG + chr2.3:11378794-11378813 None:intergenic 50.0%
!! GGTGATGGAAGTGAATTGGG+TGG + chr2.3:11378581-11378600 None:intergenic 50.0%
GGTGGAGGTGGAATTGAGGT+TGG - chr2.3:11379856-11379875 MS.gene49853:CDS 55.0%
TGGAGGGATGATGAGGTTGG+AGG + chr2.3:11378774-11378793 None:intergenic 55.0%
!! AGAGGGAGAGTGGTTGGTGA+TGG + chr2.3:11378596-11378615 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 11378542 11379957 11378542 ID=MS.gene49853
chr2.3 mRNA 11378542 11379957 11378542 ID=MS.gene49853.t1;Parent=MS.gene49853
chr2.3 exon 11378542 11379957 11378542 ID=MS.gene49853.t1.exon1;Parent=MS.gene49853.t1
chr2.3 CDS 11378542 11379957 11378542 ID=cds.MS.gene49853.t1;Parent=MS.gene49853.t1
Gene Sequence

>MS.gene49853

ATGTTGAAGGTAATTGAACATAGCCAAGTTGCACCACCACCCAATTCACTTCCATCACCAACCACTCTCCCTCTCACTTTCTTCGACATTTCATGGCTTTACTGTCAATCCGCTGTTAAACGTATCTTCTTCTACCATTTTCCTCATCCAACTCATCACTTCCTACAAACAACACTTCCCATTCTCAAACACTCACTTTCCTTAACCCTCCAACACTTCTTCCCTTTTTCCTCCAACCTCATCATCCCTCCAAATTCCCATAACACCCCTCCTTATATACGTTACCTTGATGAAGACTCTATCTCCTTCACCGTTGCCGAATCTTCAGCAGACTTCAACATCCTCGTATCTGATTCACAAGATGCTCTAAATTGGCACCATCTTGTTCCTAACTTGCCTTCACCTCATACAGAACAAAACGGTACATGTATCGTTCCGCTCATGGCCATTCAAATCACCATTCTACCAAACTCTGGCTTCTCTATCTGCCTCACTTACAACCATGTCGCTGCAGACGGAAAATCACTTCATCATTTCATGAAATTTTGGGCCTCTCTTTCAAAAGCCATAGCAAAAAACAATAACAACAATAATTTGTCTCTTGAATACTCTCCGCCTCTTGATCTTCCTTCCCATGAAAGAGATGGAGTGCTTAAACACCCAACGGCTCCTAAACTCACCAACTTACAAGAAATACAAGATTTTGTTTTGGAAGTCATGGAATCCACAAGTCTCGTTCGAGATGCAGCTTACGCTAACAAGGTACGAACTAGTTTAGTATTGAGTCGTGAAGAAGTTCAGAAACTAAAGAGATGGGTTGTTGGTAAAAGTAAAGAAACAACACCGCACATGTCAACTTTTGTTGTAACATGTTCCTTGATTTGGTTTTGTATGGTAAAATCAGAGCAAAGTAAACGTGATTGCACTGGTGATGATCTAGTCTACTTCATATTCTTGGCAGATTGTCGTGATCGTTCTGAATTTTCATTACCAAAAACTTATTTTGGAAATTGTCTTGCATCTTATGCTGTGGCTATAAAGAGAGATGAGTTAGTTGGAAAAAATGGGATTGTTGTGGCTTCAAACGGTATTGAAAAGAAGATAAGAGATTTTAAGAGTGATGATTTGTTAGGAGTTGAAACGTTGATACCTGATTATAGTGAATCATTAAAACCAGGTAACTCGATGGTAGTGGTTGCTGGGTCACCTAAACTTGATGTTTATGAGACTGATTTTGGATGGGGAAAACCAAAGAAATCTGATGCAGTGCATATTGATTCGTTCGGTTCGATTTCTCTTTCTGATTGTAGAGATGGTGGAGGTGGAATTGAGGTTGGTTTGGTTCTTGAGAGGTCTCAAATGACTAATTTCCTCAATATCTATAAAGAACAACTTGGTGATATTTGTAGCATCTGA
Protein sequence

>MS.gene49853.t1

MLKVIEHSQVAPPPNSLPSPTTLPLTFFDISWLYCQSAVKRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHFFPFSSNLIIPPNSHNTPPYIRYLDEDSISFTVAESSADFNILVSDSQDALNWHHLVPNLPSPHTEQNGTCIVPLMAIQITILPNSGFSICLTYNHVAADGKSLHHFMKFWASLSKAIAKNNNNNNLSLEYSPPLDLPSHERDGVLKHPTAPKLTNLQEIQDFVLEVMESTSLVRDAAYANKVRTSLVLSREEVQKLKRWVVGKSKETTPHMSTFVVTCSLIWFCMVKSEQSKRDCTGDDLVYFIFLADCRDRSEFSLPKTYFGNCLASYAVAIKRDELVGKNGIVVASNGIEKKIRDFKSDDLLGVETLIPDYSESLKPGNSMVVVAGSPKLDVYETDFGWGKPKKSDAVHIDSFGSISLSDCRDGGGGIEVGLVLERSQMTNFLNIYKEQLGDICSI