Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53383.t1 | PNY08881.1 | 84.5 | 677 | 40 | 2 | 1 | 613 | 114 | 789 | 0.00E+00 | 1077.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53383.t1 | Q84P17 | 77.0 | 343 | 78 | 1 | 1 | 342 | 368 | 710 | 3.8e-156 | 553.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53383.t1 | A0A2K3P0S6 | 84.5 | 677 | 40 | 2 | 1 | 613 | 114 | 789 | 0.0e+00 | 1077.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene53383 | 0.829464 | 5.07E-55 | -1.69E-46 |
| MS.gene049825 | MS.gene53383 | 0.826005 | 3.44E-54 | -1.69E-46 |
| MS.gene04987 | MS.gene53383 | 0.809705 | 1.66E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene53383 | 0.829616 | 4.66E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene53383 | 0.84477 | 6.15E-59 | -1.69E-46 |
| MS.gene050228 | MS.gene53383 | 0.852844 | 3.54E-61 | -1.69E-46 |
| MS.gene050277 | MS.gene53383 | 0.816713 | 4.80E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene53383 | 0.836915 | 7.07E-57 | -1.69E-46 |
| MS.gene050330 | MS.gene53383 | -0.826815 | 2.21E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene53383 | 0.802627 | 5.13E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene53383 | -0.811947 | 5.43E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene53383 | 0.808891 | 2.48E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene53383 | 0.823778 | 1.15E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene53383 | 0.825065 | 5.74E-54 | -1.69E-46 |
| MS.gene050724 | MS.gene53383 | 0.803531 | 3.33E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene53383 | 0.811953 | 5.41E-51 | -1.69E-46 |
| MS.gene050824 | MS.gene53383 | 0.809925 | 1.49E-50 | -1.69E-46 |
| MS.gene051257 | MS.gene53383 | 0.806578 | 7.69E-50 | -1.69E-46 |
| MS.gene051633 | MS.gene53383 | 0.807272 | 5.48E-50 | -1.69E-46 |
| MS.gene052048 | MS.gene53383 | -0.805881 | 1.08E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene53383 | 0.841045 | 6.03E-58 | -1.69E-46 |
| MS.gene052286 | MS.gene53383 | 0.822456 | 2.35E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene53383 | 0.846358 | 2.28E-59 | -1.69E-46 |
| MS.gene052309 | MS.gene53383 | -0.813025 | 3.15E-51 | -1.69E-46 |
| MS.gene052358 | MS.gene53383 | -0.82581 | 3.83E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene53383 | 0.852954 | 3.29E-61 | -1.69E-46 |
| MS.gene052600 | MS.gene53383 | 0.802455 | 5.56E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene53383 | 0.837826 | 4.13E-57 | -1.69E-46 |
| MS.gene052858 | MS.gene53383 | 0.822716 | 2.04E-53 | -1.69E-46 |
| MS.gene052860 | MS.gene53383 | 0.814678 | 1.36E-51 | -1.69E-46 |
| MS.gene053054 | MS.gene53383 | -0.814661 | 1.38E-51 | -1.69E-46 |
| MS.gene053294 | MS.gene53383 | 0.818427 | 1.97E-52 | -1.69E-46 |
| MS.gene054942 | MS.gene53383 | 0.84487 | 5.78E-59 | -1.69E-46 |
| MS.gene055808 | MS.gene53383 | 0.829467 | 5.07E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene53383 | 0.852289 | 5.09E-61 | -1.69E-46 |
| MS.gene056506 | MS.gene53383 | 0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene53383 | 0.816945 | 4.26E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene53383 | 0.802674 | 5.02E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene53383 | 0.823864 | 1.10E-53 | -1.69E-46 |
| MS.gene057140 | MS.gene53383 | 0.803341 | 3.65E-49 | -1.69E-46 |
| MS.gene057555 | MS.gene53383 | 0.818477 | 1.92E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene53383 | 0.810422 | 1.16E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene53383 | 0.81458 | 1.43E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene53383 | 0.812701 | 3.71E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene53383 | 0.808229 | 3.43E-50 | -1.69E-46 |
| MS.gene058635 | MS.gene53383 | 0.807501 | 4.90E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene53383 | 0.812947 | 3.28E-51 | -1.69E-46 |
| MS.gene059249 | MS.gene53383 | 0.803333 | 3.66E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene53383 | 0.841158 | 5.63E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene53383 | 0.838064 | 3.59E-57 | -1.69E-46 |
| MS.gene060297 | MS.gene53383 | 0.814172 | 1.76E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene53383 | 0.820834 | 5.56E-53 | -1.69E-46 |
| MS.gene060619 | MS.gene53383 | 0.816871 | 4.42E-52 | -1.69E-46 |
| MS.gene060907 | MS.gene53383 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene53383 | -0.833172 | 6.21E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 176 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCAATCCTTTGTTTA+AGG | 0.105370 | 4.1:+13870557 | MS.gene53383:CDS |
| CATGATGAGGTTTACTTTAA+AGG | 0.142037 | 4.1:+13869593 | MS.gene53383:CDS |
| GAGGACATTCTCGAACTTTC+AGG | 0.153863 | 4.1:-13874488 | None:intergenic |
| GGATGCAGGTGTTACCATTT+TGG | 0.185825 | 4.1:+13868593 | MS.gene53383:intron |
| TCTCCTCAAGGCCATGGTTT+TGG | 0.228125 | 4.1:+13867659 | MS.gene53383:CDS |
| CCCCTGCAGCCTCAAGCTTT+TGG | 0.237441 | 4.1:+13868891 | MS.gene53383:CDS |
| CTATTGCTGGCCGACAAATT+TGG | 0.238876 | 4.1:+13867565 | MS.gene53383:CDS |
| ACAAATATAACAAGCTGTTC+TGG | 0.253499 | 4.1:-13870465 | None:intergenic |
| TTATATCACTGCTTTCTAAA+TGG | 0.268015 | 4.1:+13867611 | MS.gene53383:CDS |
| CAGGGCTGATGAATGCATTT+TGG | 0.275186 | 4.1:+13870404 | MS.gene53383:CDS |
| AAAGGAATGCCCTTGTATAA+AGG | 0.286398 | 4.1:+13869611 | MS.gene53383:CDS |
| TCGGTGTTGCAACTGAAAAT+AGG | 0.286948 | 4.1:+13870439 | MS.gene53383:CDS |
| AAGGGGAGACTGAGGATAAC+TGG | 0.300402 | 4.1:+13873249 | MS.gene53383:CDS |
| CGACCGCGCCTTGGCTTCCT+TGG | 0.304224 | 4.1:-13872879 | None:intergenic |
| GCTTGGAACGGTTCCCAAAA+TGG | 0.305618 | 4.1:-13868607 | None:intergenic |
| CTATCATCATTGCTGCGTTT+TGG | 0.305949 | 4.1:-13873047 | None:intergenic |
| CTTTATTCCACCAAGATTCA+TGG | 0.317320 | 4.1:-13870102 | None:intergenic |
| CATCAGCAGCACTTCGTATT+GGG | 0.324593 | 4.1:-13867508 | None:intergenic |
| CGGTGTTGCAACTGAAAATA+GGG | 0.329692 | 4.1:+13870440 | MS.gene53383:CDS |
| CCTCCACATAATTCAATGAT+TGG | 0.330215 | 4.1:-13868834 | None:intergenic |
| CATGAATCTTGGTGGAATAA+AGG | 0.335098 | 4.1:+13870103 | MS.gene53383:CDS |
| TGAGTCCAAGGAATAGCTTT+TGG | 0.336308 | 4.1:-13867479 | None:intergenic |
| GGTTTATTCCCCATCTCTCT+TGG | 0.342158 | 4.1:+13869542 | MS.gene53383:CDS |
| AAGGAATGCCCTTGTATAAA+GGG | 0.349792 | 4.1:+13869612 | MS.gene53383:CDS |
| ACAAATTTGGGATGGGTGAT+AGG | 0.352478 | 4.1:+13867578 | MS.gene53383:CDS |
| GGCTTCCTTGGAATTGTTGT+TGG | 0.353522 | 4.1:-13872867 | None:intergenic |
| CTGCTATTGACGTTCAAGTT+GGG | 0.355743 | 4.1:+13867537 | MS.gene53383:CDS |
| TATTGCTGGCCGACAAATTT+GGG | 0.362824 | 4.1:+13867566 | MS.gene53383:CDS |
| GCAACAAAATGCGGGTGCTT+TGG | 0.363915 | 4.1:+13872971 | MS.gene53383:CDS |
| TTCCAAGCTTAGTGAAATCT+TGG | 0.364156 | 4.1:+13868622 | MS.gene53383:CDS |
| GTTCAAATGCAGAAACTCTA+AGG | 0.366002 | 4.1:+13870508 | MS.gene53383:CDS |
| TCCACAGGGCAAATGATAAC+TGG | 0.371102 | 4.1:+13874098 | MS.gene53383:intron |
| TACTCGATGTATGGAGGGCT+TGG | 0.372642 | 4.1:+13868650 | MS.gene53383:CDS |
| TTCCAAGATTTCACTAAGCT+TGG | 0.392624 | 4.1:-13868624 | None:intergenic |
| GGGACTTCCCGTAATGTAAC+TGG | 0.392704 | 4.1:-13868871 | None:intergenic |
| CTCCAAAAGCTTGAGGCTGC+AGG | 0.403739 | 4.1:-13868893 | None:intergenic |
| GGTGCAGGAGATCAATTGTT+TGG | 0.409092 | 4.1:+13873271 | MS.gene53383:CDS |
| CAAATGTTGATGATGATCTA+TGG | 0.419523 | 4.1:+13868787 | MS.gene53383:CDS |
| CAAATATAACAAGCTGTTCT+GGG | 0.423540 | 4.1:-13870464 | None:intergenic |
| AATCCAATCATTGAATTATG+TGG | 0.424565 | 4.1:+13868831 | MS.gene53383:CDS |
| AGAGCTGGAGAAAGCAATAA+AGG | 0.432889 | 4.1:+13874132 | MS.gene53383:CDS |
| AAGTTGGGGATGTCTATTGC+TGG | 0.435452 | 4.1:+13867552 | MS.gene53383:CDS |
| CCATCAGCAGCACTTCGTAT+TGG | 0.435928 | 4.1:-13867509 | None:intergenic |
| TGGAGAGAAGGCGGTGATTG+AGG | 0.436030 | 4.1:+13873106 | MS.gene53383:CDS |
| TCTCCTACTACATTCTTAAT+CGG | 0.436541 | 4.1:-13873203 | None:intergenic |
| GCCTGCATGGATTGATGATA+AGG | 0.442007 | 4.1:+13874757 | MS.gene53383:CDS |
| GATCCCTCATTACCCTCCTC+AGG | 0.443183 | 4.1:-13870775 | None:intergenic |
| TGTTATATTTGTAGTTCTAA+AGG | 0.443786 | 4.1:+13870476 | MS.gene53383:CDS |
| GCTTGCGTCCAGTTACATTA+CGG | 0.444712 | 4.1:+13868863 | MS.gene53383:CDS |
| CTTGCGTCCAGTTACATTAC+GGG | 0.455274 | 4.1:+13868864 | MS.gene53383:CDS |
| GGAAGATGGTGGTGGAGAGA+AGG | 0.455976 | 4.1:+13873094 | MS.gene53383:CDS |
| CCTCGTAGAAACAAAATTTG+AGG | 0.457143 | 4.1:-13874507 | None:intergenic |
| AGGACATTCTCGAACTTTCA+GGG | 0.462386 | 4.1:-13874487 | None:intergenic |
| TTGGAAGAGTACTCGATGTA+TGG | 0.465523 | 4.1:+13868641 | MS.gene53383:CDS |
| AAATTGAGCGTGTATGTGAC+AGG | 0.466683 | 4.1:+13870385 | MS.gene53383:CDS |
| ATGATGGTGCTGAAATTGAT+TGG | 0.468138 | 4.1:+13873225 | MS.gene53383:CDS |
| AGAAAGCAATAAAGGTGTAC+TGG | 0.471230 | 4.1:+13874140 | MS.gene53383:CDS |
| AAGATGGTGTACAGGGAGAA+AGG | 0.474258 | 4.1:+13874534 | MS.gene53383:CDS |
| TGAGGAGGAGGTGGAAGAAG+AGG | 0.474972 | 4.1:+13873073 | MS.gene53383:CDS |
| AGAACACGTTTGCTGCAATT+CGG | 0.476704 | 4.1:+13872949 | MS.gene53383:CDS |
| GATATAATCAAGAGAATGGT+TGG | 0.477992 | 4.1:+13870044 | MS.gene53383:CDS |
| AGAGAGTGAGAGCTGGCCAT+TGG | 0.480727 | 4.1:+13873130 | MS.gene53383:CDS |
| ATCACCCATCCCAAATTTGT+CGG | 0.481973 | 4.1:-13867575 | None:intergenic |
| CATCCGATTAAGAATGTAGT+AGG | 0.483008 | 4.1:+13873200 | MS.gene53383:CDS |
| AGCACAGCATCAATGACAAC+TGG | 0.485665 | 4.1:+13868921 | MS.gene53383:CDS |
| TGCTATTGACGTTCAAGTTG+GGG | 0.485865 | 4.1:+13867538 | MS.gene53383:CDS |
| CTAAAGATCGGTTACCTCCC+AGG | 0.492013 | 4.1:+13874167 | MS.gene53383:CDS |
| GCAACTCTTGCTTTGTACCA+TGG | 0.495276 | 4.1:+13867635 | MS.gene53383:CDS |
| GAGGGAATAAGATGGTGTAC+AGG | 0.495962 | 4.1:+13874526 | MS.gene53383:CDS |
| CATTGGATACGGATGTCGGG+TGG | 0.496433 | 4.1:+13873147 | MS.gene53383:CDS |
| ACTCAGAACTGCGGATGAGC+TGG | 0.496745 | 4.1:+13874697 | MS.gene53383:CDS |
| GGAAGATGTTCGAGGAAACT+CGG | 0.500060 | 4.1:-13870744 | None:intergenic |
| GAAGAAGAGGAAGATGGTGG+TGG | 0.502013 | 4.1:+13873086 | MS.gene53383:CDS |
| GTGACCCAAAAGCTATTCCT+TGG | 0.502276 | 4.1:+13867474 | MS.gene53383:CDS |
| TACGAAGTGCTGCTGATGGA+TGG | 0.504944 | 4.1:+13867513 | MS.gene53383:CDS |
| TGATGGTGCTGAAATTGATT+GGG | 0.506693 | 4.1:+13873226 | MS.gene53383:CDS |
| GCAATTCGGCAACAAAATGC+GGG | 0.507031 | 4.1:+13872963 | MS.gene53383:CDS |
| TGGCCATTGGATACGGATGT+CGG | 0.507521 | 4.1:+13873143 | MS.gene53383:CDS |
| TGAGAGCTGGCCATTGGATA+CGG | 0.507959 | 4.1:+13873136 | MS.gene53383:CDS |
| GTTCCTTGTGTTGGTGAAGT+GGG | 0.510523 | 4.1:+13869521 | MS.gene53383:CDS |
| GCTGATGACACCATGAATCT+TGG | 0.510564 | 4.1:+13870092 | MS.gene53383:CDS |
| ACTATGATTGTTCAGGATGC+AGG | 0.510990 | 4.1:+13868579 | MS.gene53383:intron |
| GGCCATTGGATACGGATGTC+GGG | 0.512837 | 4.1:+13873144 | MS.gene53383:CDS |
| AGATACCTTCCCTTTATACA+AGG | 0.512979 | 4.1:-13869621 | None:intergenic |
| TCAGATGCTCCAAGAGAGAT+GGG | 0.517385 | 4.1:-13869551 | None:intergenic |
| GAAGATGTTCGAGGAAACTC+GGG | 0.518970 | 4.1:-13870743 | None:intergenic |
| GACTGAGGATAACTGGGTGC+AGG | 0.519180 | 4.1:+13873256 | MS.gene53383:CDS |
| TGATAGTGATGAGGAGGAGG+TGG | 0.520072 | 4.1:+13873064 | MS.gene53383:CDS |
| GATGTATGGAGGGCTTGGAT+TGG | 0.521106 | 4.1:+13868655 | MS.gene53383:CDS |
| ATCAGATGCTCCAAGAGAGA+TGG | 0.521624 | 4.1:-13869552 | None:intergenic |
| ATATTTGTAGTTCTAAAGGA+AGG | 0.523282 | 4.1:+13870480 | MS.gene53383:CDS |
| ACAAGTACGATTAAAGGGCT+AGG | 0.524252 | 4.1:-13873317 | None:intergenic |
| GGAGATCAATTGTTTGGAGT+GGG | 0.524391 | 4.1:+13873277 | MS.gene53383:CDS |
| CATTAACATCGAGAAAGACT+TGG | 0.524986 | 4.1:+13874458 | MS.gene53383:CDS |
| TGGAGATATAATCAAGAGAA+TGG | 0.526748 | 4.1:+13870040 | MS.gene53383:CDS |
| CTTTAAAGTAAACCTCATCA+TGG | 0.526934 | 4.1:-13869592 | None:intergenic |
| GTACGATTAAAGGGCTAGGA+TGG | 0.528482 | 4.1:-13873313 | None:intergenic |
| AAGAATGTAGTAGGAGATGA+TGG | 0.528915 | 4.1:+13873209 | MS.gene53383:CDS |
| GTGCTGAAATTGATTGGGAA+GGG | 0.532847 | 4.1:+13873231 | MS.gene53383:CDS |
| TCCAAAAGCTTGAGGCTGCA+GGG | 0.533247 | 4.1:-13868892 | None:intergenic |
| AACATTTGATGTTTCTCCAG+TGG | 0.538029 | 4.1:-13868772 | None:intergenic |
| GCTGCTATTGACGTTCAAGT+TGG | 0.538506 | 4.1:+13867536 | MS.gene53383:CDS |
| TGCTGAAATTGATTGGGAAG+GGG | 0.540914 | 4.1:+13873232 | MS.gene53383:CDS |
| CAACAATTCCAAGGAAGCCA+AGG | 0.541191 | 4.1:+13872871 | MS.gene53383:CDS |
| GAGGTGGAAGAAGAGGAAGA+TGG | 0.541968 | 4.1:+13873080 | MS.gene53383:CDS |
| AGATGGTGGTGGAGAGAAGG+CGG | 0.543685 | 4.1:+13873097 | MS.gene53383:CDS |
| ATTGGATACGGATGTCGGGT+GGG | 0.544540 | 4.1:+13873148 | MS.gene53383:CDS |
| TGCAATTCGGCAACAAAATG+CGG | 0.545718 | 4.1:+13872962 | MS.gene53383:CDS |
| TTGGATACGGATGTCGGGTG+GGG | 0.546849 | 4.1:+13873149 | MS.gene53383:CDS |
| TGATTGGGAAGGGGAGACTG+AGG | 0.550882 | 4.1:+13873241 | MS.gene53383:CDS |
| TAGCAGGTTCTTAGAAGACA+TGG | 0.550900 | 4.1:+13870020 | MS.gene53383:intron |
| GTGGAAGAAGAGGAAGATGG+TGG | 0.551552 | 4.1:+13873083 | MS.gene53383:CDS |
| GCTATATCATTGTGCAAGGG+AGG | 0.554278 | 4.1:+13870069 | MS.gene53383:CDS |
| CCAAAAGCTTGAGGCTGCAG+GGG | 0.557982 | 4.1:-13868891 | None:intergenic |
| CCAGAAAATGTTCCTTGTGT+TGG | 0.560714 | 4.1:+13869512 | MS.gene53383:CDS |
| GCCTTATCATCAATCCATGC+AGG | 0.566180 | 4.1:-13874758 | None:intergenic |
| ACGAAGTGCTGCTGATGGAT+GGG | 0.566192 | 4.1:+13867514 | MS.gene53383:CDS |
| GTTTCTACGAGGGAATAAGA+TGG | 0.569954 | 4.1:+13874518 | MS.gene53383:CDS |
| ATCAGCAGCACTTCGTATTG+GGG | 0.570807 | 4.1:-13867507 | None:intergenic |
| AAAGTAAACCTCATCATGGT+CGG | 0.573356 | 4.1:-13869588 | None:intergenic |
| GAATCATAAAGATATAATGA+AGG | 0.574940 | 4.1:+13872995 | MS.gene53383:CDS |
| CATGGATCTCCTCAAGGCCA+TGG | 0.575075 | 4.1:+13867653 | MS.gene53383:CDS |
| TGATGATAGTGATGAGGAGG+AGG | 0.575455 | 4.1:+13873061 | MS.gene53383:CDS |
| TGTTCCTTGTGTTGGTGAAG+TGG | 0.576111 | 4.1:+13869520 | MS.gene53383:CDS |
| GATGACACCATGAATCTTGG+TGG | 0.576878 | 4.1:+13870095 | MS.gene53383:CDS |
| GGTGGCTATATCATTGTGCA+AGG | 0.577405 | 4.1:+13870065 | MS.gene53383:CDS |
| AATTTCCAACAACAATTCCA+AGG | 0.578397 | 4.1:+13872862 | MS.gene53383:CDS |
| TTGAGGAAGAGAGTGAGAGC+TGG | 0.578485 | 4.1:+13873123 | MS.gene53383:CDS |
| AGGGGAGACTGAGGATAACT+GGG | 0.579701 | 4.1:+13873250 | MS.gene53383:CDS |
| AGGAGATCAATTGTTTGGAG+TGG | 0.582911 | 4.1:+13873276 | MS.gene53383:CDS |
| CAATTAATAACGTAAATACA+AGG | 0.583174 | 4.1:-13874780 | None:intergenic |
| CACCCGACATCCGTATCCAA+TGG | 0.587765 | 4.1:-13873146 | None:intergenic |
| GCTGGCCGACAAATTTGGGA+TGG | 0.589078 | 4.1:+13867570 | MS.gene53383:CDS |
| AAGCAGTGATATAACAGAGT+AGG | 0.589883 | 4.1:-13867602 | None:intergenic |
| TTCCCAAAACCATGGCCTTG+AGG | 0.591486 | 4.1:-13867662 | None:intergenic |
| CTGAATGCTCCAAAAGCTTG+AGG | 0.592552 | 4.1:-13868900 | None:intergenic |
| GGTGCTGAAATTGATTGGGA+AGG | 0.593647 | 4.1:+13873230 | MS.gene53383:CDS |
| GAAGAGTACTCGATGTATGG+AGG | 0.593996 | 4.1:+13868644 | MS.gene53383:CDS |
| TTCCAACAAAATCCTGAGGA+GGG | 0.594371 | 4.1:+13870763 | MS.gene53383:CDS |
| CCAATACGAAGTGCTGCTGA+TGG | 0.596120 | 4.1:+13867509 | MS.gene53383:CDS |
| CTGGCCGACAAATTTGGGAT+GGG | 0.599613 | 4.1:+13867571 | MS.gene53383:CDS |
| ACAATGCAAAGAAGCCTGCA+TGG | 0.600174 | 4.1:+13874744 | MS.gene53383:CDS |
| TAAAGATCGGTTACCTCCCA+GGG | 0.600728 | 4.1:+13874168 | MS.gene53383:CDS |
| AATGCCCTTGTATAAAGGGA+AGG | 0.602985 | 4.1:+13869616 | MS.gene53383:CDS |
| AGATTTCACTAAGCTTGGAA+CGG | 0.603067 | 4.1:-13868619 | None:intergenic |
| CTATATCATTGTGCAAGGGA+GGG | 0.603945 | 4.1:+13870070 | MS.gene53383:CDS |
| TTTGTCATTCTTGACGACAA+TGG | 0.604567 | 4.1:+13868945 | MS.gene53383:CDS |
| ATTGGGGCAAGTTGAGTCCA+AGG | 0.604685 | 4.1:-13867491 | None:intergenic |
| CAATGATGATAGTGATGAGG+AGG | 0.605683 | 4.1:+13873058 | MS.gene53383:CDS |
| GATATAATGAAGGACAGTGT+CGG | 0.611630 | 4.1:+13873005 | MS.gene53383:CDS |
| GGACCTTAAACAAAGGATTG+AGG | 0.611864 | 4.1:-13870560 | None:intergenic |
| TTGTACCATGGATCTCCTCA+AGG | 0.614255 | 4.1:+13867647 | MS.gene53383:CDS |
| TGTACTGGAGTGCTAAAGAT+CGG | 0.614574 | 4.1:+13874155 | MS.gene53383:CDS |
| AGGGAATAAGATGGTGTACA+GGG | 0.616347 | 4.1:+13874527 | MS.gene53383:CDS |
| CTTCCAACAAAATCCTGAGG+AGG | 0.619824 | 4.1:+13870762 | MS.gene53383:CDS |
| CCAATCATTGAATTATGTGG+AGG | 0.624312 | 4.1:+13868834 | MS.gene53383:CDS |
| CATGGCCTTGAGGAGATCCA+TGG | 0.627745 | 4.1:-13867652 | None:intergenic |
| AAGGGTCGGACCTTAAACAA+AGG | 0.631189 | 4.1:-13870567 | None:intergenic |
| GAACAAATTTCCCAAAACCA+TGG | 0.631785 | 4.1:-13867670 | None:intergenic |
| GGTGTTGCAACTGAAAATAG+GGG | 0.634076 | 4.1:+13870441 | MS.gene53383:CDS |
| AAGAGTACTCGATGTATGGA+GGG | 0.637862 | 4.1:+13868645 | MS.gene53383:CDS |
| GATACCTTCCCTTTATACAA+GGG | 0.639248 | 4.1:-13869620 | None:intergenic |
| CAGCAATGATGATAGTGATG+AGG | 0.657518 | 4.1:+13873055 | MS.gene53383:CDS |
| ATTCCAAGGAAGCCAAGGCG+CGG | 0.658601 | 4.1:+13872876 | MS.gene53383:CDS |
| GCTGAATGCCGACCATGATG+AGG | 0.659320 | 4.1:+13869580 | MS.gene53383:CDS |
| ATAATCAAGAGAATGGTTGG+TGG | 0.659430 | 4.1:+13870047 | MS.gene53383:CDS |
| TAAATTGACCATACCCTGGG+AGG | 0.668151 | 4.1:-13874181 | None:intergenic |
| AAGGCGCGGTCGTAAAAGTG+AGG | 0.675835 | 4.1:+13872890 | MS.gene53383:CDS |
| TAAGGATGATAGAAACTCTG+AGG | 0.680715 | 4.1:+13872836 | MS.gene53383:intron |
| GTGGCTATATCATTGTGCAA+GGG | 0.681013 | 4.1:+13870066 | MS.gene53383:CDS |
| AAACCCACTTCACCAACACA+AGG | 0.689168 | 4.1:-13869524 | None:intergenic |
| CATCTTCCAACAAAATCCTG+AGG | 0.697941 | 4.1:+13870759 | MS.gene53383:CDS |
| CTTTGCAGAACTCAGAACTG+CGG | 0.713652 | 4.1:+13874688 | MS.gene53383:intron |
| CAGATGCTCCAAGAGAGATG+GGG | 0.737772 | 4.1:-13869550 | None:intergenic |
| AATTGAGCGTGTATGTGACA+GGG | 0.741241 | 4.1:+13870386 | MS.gene53383:CDS |
| AAGATGTTCGAGGAAACTCG+GGG | 0.765970 | 4.1:-13870742 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13867474 | 13874799 | 13867474 | ID=MS.gene53383 |
| chr4.1 | mRNA | 13867474 | 13874799 | 13867474 | ID=MS.gene53383.t1;Parent=MS.gene53383 |
| chr4.1 | exon | 13867474 | 13867694 | 13867474 | ID=MS.gene53383.t1.exon1;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13867474 | 13867694 | 13867474 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13868594 | 13868688 | 13868594 | ID=MS.gene53383.t1.exon2;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13868594 | 13868688 | 13868594 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13868761 | 13868977 | 13868761 | ID=MS.gene53383.t1.exon3;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13868761 | 13868977 | 13868761 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13869512 | 13869637 | 13869512 | ID=MS.gene53383.t1.exon4;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13869512 | 13869637 | 13869512 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13870026 | 13870124 | 13870026 | ID=MS.gene53383.t1.exon5;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13870026 | 13870124 | 13870026 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13870372 | 13870578 | 13870372 | ID=MS.gene53383.t1.exon6;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13870372 | 13870578 | 13870372 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13870722 | 13870784 | 13870722 | ID=MS.gene53383.t1.exon7;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13870722 | 13870784 | 13870722 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13872840 | 13873357 | 13872840 | ID=MS.gene53383.t1.exon8;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13872840 | 13873357 | 13872840 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13874105 | 13874189 | 13874105 | ID=MS.gene53383.t1.exon9;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13874105 | 13874189 | 13874105 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13874444 | 13874555 | 13874444 | ID=MS.gene53383.t1.exon10;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13874444 | 13874555 | 13874444 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| chr4.1 | exon | 13874696 | 13874799 | 13874696 | ID=MS.gene53383.t1.exon11;Parent=MS.gene53383.t1 |
| chr4.1 | CDS | 13874696 | 13874799 | 13874696 | ID=cds.MS.gene53383.t1;Parent=MS.gene53383.t1 |
| Gene Sequence |
| Protein sequence |
