AlfalfaGEDB | MS.gene57752

M. sativa cultivar XinJiangDaYe / MS.gene57752

KEGG: K02209
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005524 GO:0005575 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006270 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042555 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0110165 GO:1901265 GO:1901360 GO:1901363 GO:1901576 GO:1990837
PFAM: PF00493.26 PF14551.9 PF17207.6

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57752.t1	XP_013458136.1	98.9	457	5	0	1	457	1	457	4.70E-259	903.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57752.t1	O80786	78.3	457	95	1	1	457	1	453	4.3e-205	715.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57752.t1	A0A072UR54	98.9	457	5	0	1	457	1	457	3.4e-259	903.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049251	MS.gene57752	0.801311	9.56E-49	-1.69E-46
MS.gene049397	MS.gene57752	0.872173	3.90E-67	-1.69E-46
MS.gene049596	MS.gene57752	0.825374	4.85E-54	-1.69E-46
MS.gene049622	MS.gene57752	0.819789	9.66E-53	-1.69E-46
MS.gene049660	MS.gene57752	0.802386	5.75E-49	-1.69E-46
MS.gene04985	MS.gene57752	0.836517	8.93E-57	-1.69E-46
MS.gene049989	MS.gene57752	0.900269	8.68E-78	-1.69E-46
MS.gene050297	MS.gene57752	0.877873	4.43E-69	-1.69E-46
MS.gene05054	MS.gene57752	0.805756	1.14E-49	-1.69E-46
MS.gene050648	MS.gene57752	0.817679	2.91E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57752.t1	MTR_4g116870	98.906	457	5	0	1	457	1	457	0.0	946
MS.gene57752.t1	MTR_4g071090	33.578	408	232	9	68	457	172	558	7.09e-59	207
MS.gene57752.t1	MTR_4g122270	32.719	434	257	7	35	457	216	625	2.17e-58	207
MS.gene57752.t1	MTR_4g096700	33.661	407	233	11	61	457	38	417	1.71e-54	194
MS.gene57752.t1	MTR_8g090000	28.085	470	269	9	39	457	20	471	8.26e-54	193
MS.gene57752.t1	MTR_7g109480	34.985	343	197	5	124	457	131	456	9.35e-54	191
MS.gene57752.t1	MTR_2g437540	27.682	466	279	10	38	457	20	473	2.02e-52	189
MS.gene57752.t1	MTR_7g100680	32.507	363	203	11	118	451	124	473	1.51e-44	166
MS.gene57752.t1	MTR_2g009190	31.250	416	255	11	57	457	34	433	9.88e-42	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57752.t1	AT2G07690	78.337	457	95	1	1	457	1	453	0.0	749
MS.gene57752.t1	AT2G07690	77.899	457	95	2	1	457	1	451	0.0	740
MS.gene57752.t1	AT2G16440	29.638	442	274	7	35	457	140	563	1.97e-58	206
MS.gene57752.t1	AT1G44900	32.251	431	263	7	35	457	216	625	2.37e-58	207
MS.gene57752.t1	AT1G44900	32.251	431	263	7	35	457	218	627	2.44e-58	207
MS.gene57752.t1	AT4G02060	31.042	451	268	10	40	457	14	454	1.76e-55	196
MS.gene57752.t1	AT4G02060	31.042	451	268	10	40	457	14	454	1.76e-55	196
MS.gene57752.t1	AT5G46280	30.695	417	242	9	57	457	28	413	6.16e-55	192
MS.gene57752.t1	AT5G46280	31.175	417	240	10	57	457	28	413	1.07e-54	192
MS.gene57752.t1	AT5G46280	31.175	417	240	10	57	457	28	413	2.57e-54	192

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Find 0 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATTTCTTGTTACTCTT+TGG	-	32401:3734-3753	MS.gene57752:CDS	30.0%
AATTACCAGAGGAAGAATAT+CGG	+	32401:930-949	MS.gene57752:intergenic	30.0%
ACTTAATGCATTGTTTGCAT+TGG	-	32401:3561-3580	MS.gene57752:CDS	30.0%
AGTTTAGAAGAAATTACCAG+AGG	+	32401:941-960	MS.gene57752:intergenic	30.0%
ATTATTGAAACTCAAGTGCT+TGG	-	32401:1411-1430	MS.gene57752:CDS	30.0%
CAAATATCTTCTCGTTGATA+TGG	-	32401:850-869	MS.gene57752:intron	30.0%
CAAATGTATATTACTACCTC+CGG	+	32401:2031-2050	MS.gene57752:intergenic	30.0%
CACTGATAACCTAATAAAGT+TGG	+	32401:2606-2625	MS.gene57752:intergenic	30.0%
CAGATATCAAGTATCTCAAT+TGG	+	32401:1231-1250	MS.gene57752:intergenic	30.0%
CAGCTAAAACGTGATATTAA+AGG	+	32401:2535-2554	MS.gene57752:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
32401	gene	662	3822	662	ID=MS.gene57752
32401	mRNA	662	3822	662	ID=MS.gene57752.t1;Parent=MS.gene57752
32401	exon	3541	3822	3541	ID=MS.gene57752.t1.exon1;Parent=MS.gene57752.t1
32401	CDS	3541	3822	3541	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	3312	3455	3312	ID=MS.gene57752.t1.exon2;Parent=MS.gene57752.t1
32401	CDS	3312	3455	3312	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	2657	2836	2657	ID=MS.gene57752.t1.exon3;Parent=MS.gene57752.t1
32401	CDS	2657	2836	2657	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	2451	2549	2451	ID=MS.gene57752.t1.exon4;Parent=MS.gene57752.t1
32401	CDS	2451	2549	2451	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	2232	2368	2232	ID=MS.gene57752.t1.exon5;Parent=MS.gene57752.t1
32401	CDS	2232	2368	2232	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	2009	2114	2009	ID=MS.gene57752.t1.exon6;Parent=MS.gene57752.t1
32401	CDS	2009	2114	2009	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	1544	1678	1544	ID=MS.gene57752.t1.exon7;Parent=MS.gene57752.t1
32401	CDS	1544	1678	1544	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	1371	1448	1371	ID=MS.gene57752.t1.exon8;Parent=MS.gene57752.t1
32401	CDS	1371	1448	1371	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	935	1039	935	ID=MS.gene57752.t1.exon9;Parent=MS.gene57752.t1
32401	CDS	935	1039	935	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	754	849	754	ID=MS.gene57752.t1.exon10;Parent=MS.gene57752.t1
32401	CDS	754	849	754	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1
32401	exon	662	676	662	ID=MS.gene57752.t1.exon11;Parent=MS.gene57752.t1
32401	CDS	662	676	662	ID=cds.MS.gene57752.t1;Parent=MS.gene57752.t1

Gene Sequence

>MS.gene57752

ATGTCAGGTTGGGACGAAGGAGGCGTATACTACAGCGACCAAGCACACTCATGGGACGACGGCCGTGGCGGCGAAACCGATGCCACCATCTCCAACCACACCATCCTCCAAAAATTCAAAGAATTCATCCGTAACTTTGAAACCGGTAACAATGTCTTTCCTTACAGAGAAAGCCTTCTTCACAATCCCAAATATCTTCTCGTTGATATGGAAGATCTCGACTCTTTTGACCCTGATCTTCCTTCTAAACTCCGATCTGCTCCTGCCGATATTCTTCCTCTGGTAATTTCTTCTAAACTCTGATTTTCTCCAGTTGATGAATTTGTTGATTTTGATTTTTGTGTTGATTTTTTTTTTTTTTTTGTAGTTTGAAACTGCGGCGGCGCAGGTTTTGGTGAGTTTGAAGACGAAGGTTGCTGGAGATACTGGTGATATGGAAGATGCTGCTCCTGGTGATGTTCAGATTCTTCTTACTTCTAAGGAGGATTCTGTTTCGATGAGATCGCTTGGGGTGAGTTGATTTTAACTAATTTTGTGTTTATGAAGTTGTTTAGGGAGCTAGGGTTCCAATTGAGATACTTGATATCTGTACCACCGACACTTTTAATTGAAGTGTGACCGGTCTGACACGACACATGTGATTACATTCAATTGTGTTATTTTCACAAATTATTATTGGTGTTAGTGTTTGTCTTGTGTCCATGTGTGGGCTTCATAGTATTTGATAGTTTCTATAAAGCAAGTTGATTATTATTGAAACTCAAGTGCTTGGGGTTTCGATTGAGACATTTGCTAATTTCCATGAAACAAGTTGATTATGCTGACTCTCGAATGCTTAGGAATTGAGATATTTGCTAGTTGCAACAGGACAAGTTGATTCTTATTTAATTTTGAGCATTTGGTATATTTGAGTTTTTGTCTTTCTTTCAAGAGATTGGTATATTTGAGGTTACATCAAGTTGATTATCTTTTTATCATTTTCGTAGGCTCAATACATTTCGAAGCTTGTTAAAATTGCTGGGATAACAATTGCTGCATCGAGGACTAAGGCAAAAGCAACATATGTGACCTTGATATGTAAGAATTGTAAGAAGGGGAAGCAAGTTCCGTGTCGGCCAGGACTTGGGGGAGCAGTTGTTCCACGTTCATGTGATCATGTTCCTCAGGTTTAGTTTGTGCTGTCTTTTGCTTATTTTGCAGTGGATACTTCACTGTTCTTTATTTTGCGTTTTTGAGGATGTCTCTTACATGATAAAAGGTTTTTTTTTTGTAGCCTGGAGAAGAACCTTGTCCCATTGATCCGTGGCTTATTGTTCCCGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAGTTGCAAGAAAATCCGGAGGTAGTAATATACATTTGATATGACAAAAGGTTTAAAGACAATTTGAATGATAATCATGACATCTTTATGCTGGCTTTTGAAGGACGTTCCAACTGGAGAGCTTCCTAGAAACTTGCTTCTATCCGTTGATCGACATCTTGTTCAAACTGTAGTGCCTGGCTCAAGATTAACAATCGTTGGAATCTATAGTATTTTTCAGGCCTCCAACTCTTCTACATCGTGAGTTAATCATCTTTTTTCAGCATCTTTAGATTTCTTCTTTGACTAATCTACAGTTTTTTTATGAGACCAATCTACAGTTGATGTCAATATATTCAAATTCTGTGTTTTATGCAGCAACAAAGGAGCAGTTGCAGTTAGACAGCCTTATATCAGGGTTGTAGGAATAGAAGATGGAAATGAAGCCAAGTCTCGAGGTCCCACTGCGTTTACAAATGAAGAAGTTAGTGTTCACCAACTATCAATTGACTACTTTGCTTTATACCTTGTTGGCTGCCTCCTTTAATATCACGTTTTAGCTGAGTGAATGTTAACAGTGTTTGTGGATCCCGTGAAACTAAATTTTTAAACCAACTTTATTAGGTTATCAGTGTCTTAAGAATTTTGTCATTTCCTTTCAATACTAGATACCGTCTATGATTTCTCAGTTCTATGAGTTGTATATGATCTTCTATATTTAATTATTTTTAAACCTAGGCTGAATTTTCATTCCTACTGTTACATATTCCTCATCTGTAGATGTTCCTGGTGCTAATAATGGTATCTTTTACAGATTGAAGAGTTCAAAAAATTTGCAGCTGATCATGATGTATACAAAAATATATGCTCCAAGATTGCTCCGTCTATATTTGGCCATGATGATGTCAAAAAGGCTATGGCCTGTCTTTTATTTGGAGGGTCGAGAAAGGTACACTGTTGTCTTTGAATACTCATGTATTTTGTTGGAAATATCCAAACTTTCAACATGGCTGCTGATCATATGGTCAATTTCCTTGCAAGCAGCATTTGCCAGATGGGGTGAGATTAAGAGGTGATATCAATGTGTTACTTCTCGGGGATCCATCTACTGCAAAGTCACAGGTTATTTGTTTGCAATTTTCCTTTAGACTGGTTCTTTAGTTACTACAGCAAAGTCACAGATTTTTTTTTTTTTTTGCATTTTTCCTTTAGAATGGTTCTTTGGTTACTGTGTGACAGTTGAGTTATTAAAAACAAGTGCCACTTGTGGTATCCAAAAATGTAATTATTTTTCCACCACATATAATAATGCTTAGATTTTAACATGAAATGCTCTATCATTTTTTTCTTCTATTTTTACAATTTAGCTTGGCGGTTTTGAATAATCTAACCATTATTTCATTCGCATCGTAGTTTGCATTTCCCTACATTGCCTGACGGTTACATTTTACAGTTTCTCAAGTTTGTTGAAAAGACTGCACCTATTGCTGTTTATACTTCTGGAAAAGGATCATCAGCTGCTGGCCTCACAGCCTCTGTAATCCAAGATAGCAGCACTGTAAGTCCTTTACTTAATGCATTGTTTGCATTGGCCTCGCGTATCTTGATTGAGAATCTCTGATTGTTATTCTTTGCATTTTCAGCGCGAGTTTTATCTTGAAGGAGGAGCCATGGTCTTGGCAGATGGAGGTGTTGTCTGCATTGATGAGTTTGATAAGATGAGACCAGAAGATAGGTGTGTAAACCATTTCTTGTTACTCTTTGGTAATTTATCATTGTTGGTTTGTTAAACTTTTTCACTGTATCTTTTATGTAGGGTTGCCATTCATGA

Protein sequence

>MS.gene57752.t1

MSGWDEGGVYYSDQAHSWDDGRGGETDATISNHTILQKFKEFIRNFETGNNVFPYRESLLHNPKYLLVDMEDLDSFDPDLPSKLRSAPADILPLFETAAAQVLVSLKTKVAGDTGDMEDAAPGDVQILLTSKEDSVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAVVPRSCDHVPQPGEEPCPIDPWLIVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIVGIYSIFQASNSSTSNKGAVAVRQPYIRVVGIEDGNEAKSRGPTAFTNEEIEEFKKFAADHDVYKNICSKIAPSIFGHDDVKKAMACLLFGGSRKHLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRCGCHS