Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58720.t1 | XP_013458184.1 | 96.7 | 239 | 8 | 0 | 1 | 239 | 1 | 239 | 1.90E-131 | 478.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58720.t1 | Q9ZT66 | 41.5 | 195 | 104 | 4 | 6 | 194 | 29 | 219 | 2.6e-36 | 153.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58720.t1 | A0A072V269 | 96.7 | 239 | 8 | 0 | 1 | 239 | 1 | 239 | 1.4e-131 | 478.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene58720 | -0.813359 | 2.66E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene58720 | -0.80185 | 7.41E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene58720 | 0.822297 | 2.55E-53 | -1.69E-46 |
| MS.gene049611 | MS.gene58720 | 0.825042 | 5.81E-54 | -1.69E-46 |
| MS.gene049634 | MS.gene58720 | 0.813012 | 3.18E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene58720 | 0.810756 | 9.84E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene58720 | -0.8195 | 1.12E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene58720 | -0.806376 | 8.48E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene58720 | -0.816599 | 5.09E-52 | -1.69E-46 |
| MS.gene05079 | MS.gene58720 | 0.815948 | 7.11E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene58720 | -0.817303 | 3.54E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene58720 | -0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene051044 | MS.gene58720 | 0.809568 | 1.77E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene58720 | 0.82827 | 9.87E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene58720 | 0.817651 | 2.95E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene58720 | 0.866163 | 3.49E-65 | -1.69E-46 |
| MS.gene051364 | MS.gene58720 | 0.804068 | 2.58E-49 | -1.69E-46 |
| MS.gene051366 | MS.gene58720 | 0.80418 | 2.44E-49 | -1.69E-46 |
| MS.gene051422 | MS.gene58720 | 0.831664 | 1.47E-55 | -1.69E-46 |
| MS.gene051632 | MS.gene58720 | 0.806851 | 6.73E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene58720 | 0.840922 | 6.49E-58 | -1.69E-46 |
| MS.gene051863 | MS.gene58720 | 0.816924 | 4.30E-52 | -1.69E-46 |
| MS.gene051874 | MS.gene58720 | -0.813589 | 2.37E-51 | -1.69E-46 |
| MS.gene052129 | MS.gene58720 | 0.800903 | 1.16E-48 | -1.69E-46 |
| MS.gene052164 | MS.gene58720 | -0.806646 | 7.44E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene58720 | 0.8107 | 1.01E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene58720 | 0.815162 | 1.06E-51 | -1.69E-46 |
| MS.gene05244 | MS.gene58720 | 0.806476 | 8.07E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene58720 | 0.80607 | 9.83E-50 | -1.69E-46 |
| MS.gene052805 | MS.gene58720 | 0.808111 | 3.64E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene58720 | 0.860333 | 2.22E-63 | -1.69E-46 |
| MS.gene053488 | MS.gene58720 | 0.812697 | 3.72E-51 | -1.69E-46 |
| MS.gene053887 | MS.gene58720 | 0.812367 | 4.39E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene58720 | -0.811026 | 8.60E-51 | -1.69E-46 |
| MS.gene054706 | MS.gene58720 | 0.826903 | 2.10E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene58720 | -0.818563 | 1.84E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene58720 | 0.812425 | 4.27E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene58720 | -0.8047 | 1.90E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene58720 | -0.804697 | 1.91E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene58720 | -0.807254 | 5.53E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene58720 | -0.828606 | 8.19E-55 | -1.69E-46 |
| MS.gene055942 | MS.gene58720 | 0.81368 | 2.26E-51 | -1.69E-46 |
| MS.gene055959 | MS.gene58720 | 0.808686 | 2.74E-50 | -1.69E-46 |
| MS.gene056224 | MS.gene58720 | 0.836982 | 6.80E-57 | -1.69E-46 |
| MS.gene056387 | MS.gene58720 | -0.827185 | 1.80E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene58720 | -0.827203 | 1.78E-54 | -1.69E-46 |
| MS.gene056590 | MS.gene58720 | 0.81269 | 3.73E-51 | -1.69E-46 |
| MS.gene056591 | MS.gene58720 | 0.811884 | 5.60E-51 | -1.69E-46 |
| MS.gene056697 | MS.gene58720 | 0.812058 | 5.13E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene58720 | 0.827602 | 1.43E-54 | -1.69E-46 |
| MS.gene056856 | MS.gene58720 | 0.856896 | 2.36E-62 | -1.69E-46 |
| MS.gene057261 | MS.gene58720 | 0.800014 | 1.76E-48 | -1.69E-46 |
| MS.gene057544 | MS.gene58720 | 0.804033 | 2.62E-49 | -1.69E-46 |
| MS.gene057549 | MS.gene58720 | 0.834406 | 3.05E-56 | -1.69E-46 |
| MS.gene057857 | MS.gene58720 | -0.812617 | 3.88E-51 | -1.69E-46 |
| MS.gene058067 | MS.gene58720 | 0.805368 | 1.38E-49 | -1.69E-46 |
| MS.gene058068 | MS.gene58720 | 0.823651 | 1.24E-53 | -1.69E-46 |
| MS.gene058093 | MS.gene58720 | 0.821382 | 4.16E-53 | -1.69E-46 |
| MS.gene058099 | MS.gene58720 | 0.87107 | 9.04E-67 | -1.69E-46 |
| MS.gene058117 | MS.gene58720 | 0.814341 | 1.62E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene58720 | 0.805162 | 1.52E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene58720 | 0.807586 | 4.70E-50 | -1.69E-46 |
| MS.gene058268 | MS.gene58720 | 0.829496 | 4.98E-55 | -1.69E-46 |
| MS.gene058269 | MS.gene58720 | 0.828529 | 8.55E-55 | -1.69E-46 |
| MS.gene058334 | MS.gene58720 | 0.804458 | 2.14E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene58720 | -0.804721 | 1.89E-49 | -1.69E-46 |
| MS.gene058452 | MS.gene58720 | 0.813653 | 2.30E-51 | -1.69E-46 |
| MS.gene058603 | MS.gene58720 | 0.820127 | 8.08E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene58720 | -0.816023 | 6.85E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene58720 | -0.807926 | 3.98E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene58720 | -0.813431 | 2.57E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene58720 | -0.819754 | 9.84E-53 | -1.69E-46 |
| MS.gene059953 | MS.gene58720 | 0.826022 | 3.41E-54 | -1.69E-46 |
| MS.gene059955 | MS.gene58720 | 0.829001 | 6.57E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene58720 | -0.802077 | 6.66E-49 | -1.69E-46 |
| MS.gene060405 | MS.gene58720 | 0.85836 | 8.69E-63 | -1.69E-46 |
| MS.gene060762 | MS.gene58720 | -0.824835 | 6.51E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene58720 | -0.809001 | 2.35E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene58720 | -0.801272 | 9.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58720.t1 | MTR_4g117450 | 96.653 | 239 | 8 | 0 | 1 | 239 | 1 | 239 | 1.18e-173 | 477 |
| MS.gene58720.t1 | MTR_4g117450 | 92.400 | 250 | 8 | 1 | 1 | 239 | 1 | 250 | 4.12e-170 | 469 |
| MS.gene58720.t1 | MTR_4g117400 | 80.335 | 239 | 47 | 0 | 1 | 239 | 55 | 293 | 2.18e-143 | 403 |
| MS.gene58720.t1 | MTR_4g117450 | 96.703 | 182 | 6 | 0 | 58 | 239 | 1 | 182 | 3.58e-129 | 362 |
| MS.gene58720.t1 | MTR_4g117380 | 66.946 | 239 | 78 | 1 | 1 | 239 | 1 | 238 | 7.92e-114 | 326 |
| MS.gene58720.t1 | MTR_4g117390 | 58.577 | 239 | 89 | 1 | 1 | 239 | 1 | 229 | 2.25e-100 | 291 |
| MS.gene58720.t1 | MTR_2g021340 | 49.378 | 241 | 120 | 2 | 1 | 239 | 1 | 241 | 2.81e-78 | 236 |
| MS.gene58720.t1 | MTR_2g021340 | 49.776 | 223 | 111 | 1 | 18 | 239 | 22 | 244 | 9.62e-74 | 224 |
| MS.gene58720.t1 | MTR_3g005060 | 25.837 | 209 | 135 | 6 | 41 | 238 | 119 | 318 | 2.34e-13 | 68.6 |
| MS.gene58720.t1 | MTR_3g005060 | 26.415 | 212 | 130 | 7 | 41 | 238 | 133 | 332 | 2.57e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58720.t1 | AT3G23600 | 63.180 | 239 | 88 | 0 | 1 | 239 | 1 | 239 | 3.30e-116 | 332 |
| MS.gene58720.t1 | AT3G23600 | 62.343 | 239 | 87 | 1 | 1 | 239 | 1 | 236 | 1.30e-112 | 323 |
| MS.gene58720.t1 | AT3G23570 | 59.414 | 239 | 97 | 0 | 1 | 239 | 1 | 239 | 3.92e-107 | 309 |
| MS.gene58720.t1 | AT3G23570 | 59.414 | 239 | 97 | 0 | 1 | 239 | 1 | 239 | 3.92e-107 | 309 |
| MS.gene58720.t1 | AT3G23570 | 59.414 | 239 | 97 | 0 | 1 | 239 | 1 | 239 | 3.92e-107 | 309 |
| MS.gene58720.t1 | AT1G35420 | 26.699 | 206 | 137 | 5 | 41 | 238 | 74 | 273 | 1.16e-20 | 88.2 |
| MS.gene58720.t1 | AT1G35420 | 26.699 | 206 | 137 | 5 | 41 | 238 | 110 | 309 | 2.07e-20 | 88.2 |
| MS.gene58720.t1 | AT1G35420 | 26.699 | 206 | 137 | 5 | 41 | 238 | 115 | 314 | 2.22e-20 | 88.2 |
Find 61 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCATCATACCTTAAAAT+TGG | 0.138234 | 8.1:+9865791 | None:intergenic |
| TCTGAAGCCTTCACAGCTTC+TGG | 0.161900 | 8.1:+9864008 | None:intergenic |
| AAAACAATTTGAACAAGTTT+TGG | 0.262734 | 8.1:-9864475 | MS.gene58720:CDS |
| CACGGCAGCTTGGATGAGTT+TGG | 0.291730 | 8.1:+9865038 | None:intergenic |
| AGTAAAGGTATTTCTACTAT+TGG | 0.306037 | 8.1:-9865223 | MS.gene58720:CDS |
| CATCATCATACCTTAAAATT+GGG | 0.309853 | 8.1:+9865792 | None:intergenic |
| TCTCGCATGGCTGGACTATA+AGG | 0.338659 | 8.1:-9864046 | MS.gene58720:CDS |
| CTGAAGCCTTCACAGCTTCT+GGG | 0.359372 | 8.1:+9864009 | None:intergenic |
| AATATTCCAATTGCTATACT+TGG | 0.381640 | 8.1:-9864534 | MS.gene58720:CDS |
| TTCCTAATGTCTCGCATGGC+TGG | 0.401802 | 8.1:-9864055 | MS.gene58720:CDS |
| CACGTCAGATCTTGTTGGAT+TGG | 0.404632 | 8.1:-9863980 | MS.gene58720:CDS |
| ATTTCTACTATTGGAGCTGC+TGG | 0.404890 | 8.1:-9865214 | MS.gene58720:CDS |
| TTGACAGACCTATAGATGTT+TGG | 0.407177 | 8.1:-9865506 | MS.gene58720:CDS |
| GCTAAGACTGTGTGTGAACT+TGG | 0.413908 | 8.1:-9865066 | MS.gene58720:CDS |
| GCAGACAAGGTTGCAGCAAC+CGG | 0.418523 | 8.1:-9865585 | MS.gene58720:CDS |
| CTGAACTCCTTCAGTGGTGC+TGG | 0.438411 | 8.1:-9866067 | MS.gene58720:CDS |
| GGTGTTGATGCTTATCTCAC+TGG | 0.438465 | 8.1:-9866025 | MS.gene58720:CDS |
| TAAAAGTACTAACTGGTTGA+TGG | 0.439377 | 8.1:+9865475 | None:intergenic |
| TCAGCTCCAAGTATAGCAAT+TGG | 0.450408 | 8.1:+9864528 | None:intergenic |
| GTATTATATTTATAGGAGAA+AGG | 0.450413 | 8.1:-9865283 | MS.gene58720:intron |
| TCTTTCACCCAAACATCTAT+AGG | 0.455726 | 8.1:+9865498 | None:intergenic |
| GTCCAGCCATGCGAGACATT+AGG | 0.464533 | 8.1:+9864053 | None:intergenic |
| TGACAGACCTATAGATGTTT+GGG | 0.465529 | 8.1:-9865505 | MS.gene58720:CDS |
| TGACCTCTGGAGGAGTAACT+TGG | 0.499609 | 8.1:+9864499 | None:intergenic |
| CCACTGAAGGAGTTCAGAAC+TGG | 0.500926 | 8.1:+9866073 | None:intergenic |
| GCTGGCCATGTTGCTAAACT+TGG | 0.501919 | 8.1:-9866049 | MS.gene58720:CDS |
| GGAGGCACGTCAGATCTTGT+TGG | 0.510275 | 8.1:-9863985 | MS.gene58720:CDS |
| GGATCGCCGTTGAAGAAGTC+GGG | 0.513477 | 8.1:+9865546 | None:intergenic |
| AATGTCGGAGACGAGGAGAA+TGG | 0.515388 | 8.1:+9865982 | None:intergenic |
| AGAAGCTGTGAAGGCTTCAG+AGG | 0.515748 | 8.1:-9864006 | MS.gene58720:CDS |
| GGCCATGTTGCTAAACTTGG+TGG | 0.517313 | 8.1:-9866046 | MS.gene58720:CDS |
| GTGAAGGATGTTTGCAGACA+AGG | 0.524084 | 8.1:-9865598 | MS.gene58720:intron |
| GTGGTTCCCGACTTCTTCAA+CGG | 0.543789 | 8.1:-9865552 | MS.gene58720:CDS |
| ATCATCATACCTTAAAATTG+GGG | 0.549803 | 8.1:+9865793 | None:intergenic |
| GGCGGGTTTGAGCAGCATGC+CGG | 0.559592 | 8.1:+9866094 | None:intergenic |
| GGGAACCACCACATAATATC+CGG | 0.564070 | 8.1:+9865566 | None:intergenic |
| ATATTTCCTAATGTCTCGCA+TGG | 0.567492 | 8.1:-9864059 | MS.gene58720:CDS |
| TCGTCCACTGTGATATATGA+TGG | 0.569466 | 8.1:+9865006 | None:intergenic |
| TACCGAAAATGTCGGAGACG+AGG | 0.570501 | 8.1:+9865975 | None:intergenic |
| GTCAACATTCTGAGGATCGT+AGG | 0.572570 | 8.1:+9865524 | None:intergenic |
| TAAAGACCCAGAAGCTGTGA+AGG | 0.579286 | 8.1:-9864015 | MS.gene58720:CDS |
| GGGATCGCCGTTGAAGAAGT+CGG | 0.584664 | 8.1:+9865545 | None:intergenic |
| TCAACATTCTGAGGATCGTA+GGG | 0.585841 | 8.1:+9865525 | None:intergenic |
| CTGAAGGAGTTCAGAACTGG+CGG | 0.590785 | 8.1:+9866076 | None:intergenic |
| ATAGGTCTGTCAACATTCTG+AGG | 0.591096 | 8.1:+9865516 | None:intergenic |
| TGCAGCAACCGGATATTATG+TGG | 0.592827 | 8.1:-9865574 | MS.gene58720:CDS |
| GATGTGCTAACACGGCAGCT+TGG | 0.600195 | 8.1:+9865028 | None:intergenic |
| CCAGTTCTGAACTCCTTCAG+TGG | 0.601307 | 8.1:-9866073 | MS.gene58720:CDS |
| CTAAGACTGTGTGTGAACTT+GGG | 0.604992 | 8.1:-9865065 | MS.gene58720:CDS |
| AACATGGCCAGCACCACTGA+AGG | 0.605814 | 8.1:+9866060 | None:intergenic |
| CACCACCAAGTTTAGCAACA+TGG | 0.606489 | 8.1:+9866044 | None:intergenic |
| AGCTGTGAAGGCTTCAGAGG+AGG | 0.607631 | 8.1:-9864003 | MS.gene58720:CDS |
| TGAAGGAGTTCAGAACTGGC+GGG | 0.608726 | 8.1:+9866077 | None:intergenic |
| GGAGACGAGGAGAATGGCGA+AGG | 0.615322 | 8.1:+9865988 | None:intergenic |
| ATCACAGTGGACGACATCAA+AGG | 0.644789 | 8.1:-9864997 | MS.gene58720:intron |
| TAGAACAGTACCGAAAATGT+CGG | 0.648160 | 8.1:+9865967 | None:intergenic |
| AGAATGGCGAAGGTGCAAAG+AGG | 0.653955 | 8.1:+9865998 | None:intergenic |
| ATATGATGGATGTGCTAACA+CGG | 0.668508 | 8.1:+9865020 | None:intergenic |
| AGCAACCGGATATTATGTGG+TGG | 0.672628 | 8.1:-9865571 | MS.gene58720:CDS |
| CGACCAAGTTACTCCTCCAG+AGG | 0.688981 | 8.1:-9864502 | MS.gene58720:CDS |
| ACATCCATCATATATCACAG+TGG | 0.821753 | 8.1:-9865010 | MS.gene58720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATATTCTAATAAG+CGG | + | chr8.1:9865300-9865319 | None:intergenic | 10.0% |
| !! | GAAAATTTATCATAATATTT+GGG | + | chr8.1:9865448-9865467 | None:intergenic | 10.0% |
| !!! | AATATTTTTTTTTTTGAAGA+AGG | - | chr8.1:9865308-9865327 | MS.gene58720:intron | 10.0% |
| !!! | ATATTTTTTTTTTTGAAGAA+GGG | - | chr8.1:9865309-9865328 | MS.gene58720:intron | 10.0% |
| !!! | CATTCAAATATATTTAAAAT+TGG | + | chr8.1:9865196-9865215 | None:intergenic | 10.0% |
| !!! | TTTTAAAACATATTATTTGT+CGG | - | chr8.1:9865355-9865374 | MS.gene58720:intron | 10.0% |
| !! | GGAAAATTTATCATAATATT+TGG | + | chr8.1:9865449-9865468 | None:intergenic | 15.0% |
| !! | TAAATAACAACAAAATAGAA+TGG | + | chr8.1:9865640-9865659 | None:intergenic | 15.0% |
| !! | TAAATATATTTGAATGTAAG+AGG | - | chr8.1:9865200-9865219 | MS.gene58720:CDS | 15.0% |
| !! | TAGTATATTGGAATTTAATT+TGG | + | chr8.1:9865750-9865769 | None:intergenic | 15.0% |
| !!! | AAATATAGATTTTGACTTTT+TGG | - | chr8.1:9864358-9864377 | MS.gene58720:intron | 15.0% |
| !! | ATGAACATTGTAAGAATATA+TGG | + | chr8.1:9865470-9865489 | None:intergenic | 20.0% |
| !! | CTTGCATGTATTATATTTAT+AGG | - | chr8.1:9864772-9864791 | MS.gene58720:intron | 20.0% |
| !! | GTATTATATTTATAGGAGAA+AGG | - | chr8.1:9864779-9864798 | MS.gene58720:intron | 20.0% |
| !!! | AAAACAATTTGAACAAGTTT+TGG | - | chr8.1:9865587-9865606 | MS.gene58720:CDS | 20.0% |
| !!! | AGAAATACCTTTACTTTTTA+AGG | + | chr8.1:9864834-9864853 | None:intergenic | 20.0% |
| !!! | AGTTGATAATTATGTTGATT+GGG | - | chr8.1:9865782-9865801 | MS.gene58720:intron | 20.0% |
| !!! | ATCATTATAAAAGTACTAAC+TGG | + | chr8.1:9864597-9864616 | None:intergenic | 20.0% |
| !!! | TAATTATTAGTCTTTCTTTC+AGG | - | chr8.1:9865501-9865520 | MS.gene58720:CDS | 20.0% |
| !!! | TAGTTGATAATTATGTTGAT+TGG | - | chr8.1:9865781-9865800 | MS.gene58720:intron | 20.0% |
| !!! | TTTTTCACTTACAAAAGAAT+TGG | - | chr8.1:9864398-9864417 | MS.gene58720:intron | 20.0% |
| ! | AATATTCCAATTGCTATACT+TGG | - | chr8.1:9865528-9865547 | MS.gene58720:CDS | 25.0% |
| ! | ATAATTATCAACTAACGCTA+TGG | + | chr8.1:9865775-9865794 | None:intergenic | 25.0% |
| ! | ATCATCATACCTTAAAATTG+GGG | + | chr8.1:9864272-9864291 | None:intergenic | 25.0% |
| ! | ATGTATATATGTATGTGTGA+TGG | + | chr8.1:9865663-9865682 | None:intergenic | 25.0% |
| ! | ATTGAAGCCTTAAAAAGTAA+AGG | - | chr8.1:9864824-9864843 | MS.gene58720:intron | 25.0% |
| ! | CATCATCATACCTTAAAATT+GGG | + | chr8.1:9864273-9864292 | None:intergenic | 25.0% |
| ! | TACTCAGAATTTCTTGTATA+AGG | + | chr8.1:9865710-9865729 | None:intergenic | 25.0% |
| ! | TCAACAAAATGTAAACCATA+AGG | + | chr8.1:9864437-9864456 | None:intergenic | 25.0% |
| ! | TCATCATCATACCTTAAAAT+TGG | + | chr8.1:9864274-9864293 | None:intergenic | 25.0% |
| !! | AAATCTATATTTAAGACCAG+AGG | + | chr8.1:9864350-9864369 | None:intergenic | 25.0% |
| !! | AATCTATATTTAAGACCAGA+GGG | + | chr8.1:9864349-9864368 | None:intergenic | 25.0% |
| !!! | ACATGCTTAATTTGTTTTGT+AGG | - | chr8.1:9864238-9864257 | MS.gene58720:intron | 25.0% |
| !!! | AGTAAAGGTATTTCTACTAT+TGG | - | chr8.1:9864839-9864858 | MS.gene58720:intron | 25.0% |
| !!! | ATTAGTTTTTCTACTTTGTC+TGG | + | chr8.1:9865872-9865891 | None:intergenic | 25.0% |
| !!! | CTTTTTAAGGCTTCAATTAT+TGG | + | chr8.1:9864821-9864840 | None:intergenic | 25.0% |
| !!! | TTAGTTTTTCTACTTTGTCT+GGG | + | chr8.1:9865871-9865890 | None:intergenic | 25.0% |
| AGGCACAATAACAATAAACA+AGG | + | chr8.1:9864733-9864752 | None:intergenic | 30.0% | |
| ATCAAGGAATATGCAAATTG+AGG | + | chr8.1:9865117-9865136 | None:intergenic | 30.0% | |
| CATATTGAAAACGTGAGAAT+TGG | + | chr8.1:9864302-9864321 | None:intergenic | 30.0% | |
| TTTGCATATTCCTTGATTAG+AGG | - | chr8.1:9865120-9865139 | MS.gene58720:intron | 30.0% | |
| ! | GATATAAAGCCCCAATTTTA+AGG | - | chr8.1:9864260-9864279 | MS.gene58720:intron | 30.0% |
| ! | GGTTGTTTCAATATTCCTTA+TGG | - | chr8.1:9864419-9864438 | MS.gene58720:intron | 30.0% |
| ! | TTTCCTTCTCATGTATTTTG+CGG | - | chr8.1:9864123-9864142 | MS.gene58720:intron | 30.0% |
| ! | TTTTGTTGATCTGTTTGTGA+AGG | - | chr8.1:9864448-9864467 | MS.gene58720:intron | 30.0% |
| !! | TAAAAGTACTAACTGGTTGA+TGG | + | chr8.1:9864590-9864609 | None:intergenic | 30.0% |
| !! | TCAAATTGTTTTATGACCTC+TGG | + | chr8.1:9865579-9865598 | None:intergenic | 30.0% |
| ACATCCATCATATATCACAG+TGG | - | chr8.1:9865052-9865071 | MS.gene58720:CDS | 35.0% | |
| ATATTTCCTAATGTCTCGCA+TGG | - | chr8.1:9866003-9866022 | MS.gene58720:CDS | 35.0% | |
| GCAAAATACATGAGAAGGAA+AGG | + | chr8.1:9864124-9864143 | None:intergenic | 35.0% | |
| TAAGTTCTTGAGTTCAAACC+TGG | - | chr8.1:9865845-9865864 | MS.gene58720:intron | 35.0% | |
| TCTTTCACCCAAACATCTAT+AGG | + | chr8.1:9864567-9864586 | None:intergenic | 35.0% | |
| TGACAGACCTATAGATGTTT+GGG | - | chr8.1:9864557-9864576 | MS.gene58720:intron | 35.0% | |
| TTGACAGACCTATAGATGTT+TGG | - | chr8.1:9864556-9864575 | MS.gene58720:intron | 35.0% | |
| ! | ATTATGTTGATTGGGTAGTG+AGG | - | chr8.1:9865790-9865809 | MS.gene58720:intron | 35.0% |
| ! | TAGAACAGTACCGAAAATGT+CGG | + | chr8.1:9864098-9864117 | None:intergenic | 35.0% |
| !! | AACGCTATGGACTAGTATAT+TGG | + | chr8.1:9865762-9865781 | None:intergenic | 35.0% |
| !! | AATTGTTTTATGACCTCTGG+AGG | + | chr8.1:9865576-9865595 | None:intergenic | 35.0% |
| !! | ATATGATGGATGTGCTAACA+CGG | + | chr8.1:9865045-9865064 | None:intergenic | 35.0% |
| !!! | ATGTATCGTTTTGTTTGTGC+AGG | - | chr8.1:9865963-9865982 | MS.gene58720:intron | 35.0% |
| ATAGGTCTGTCAACATTCTG+AGG | + | chr8.1:9864549-9864568 | None:intergenic | 40.0% | |
| ATTCCTTGATTAGAGGACTC+AGG | - | chr8.1:9865127-9865146 | MS.gene58720:intron | 40.0% | |
| ATTTCTACTATTGGAGCTGC+TGG | - | chr8.1:9864848-9864867 | MS.gene58720:intron | 40.0% | |
| CTAAGACTGTGTGTGAACTT+GGG | - | chr8.1:9864997-9865016 | MS.gene58720:intron | 40.0% | |
| GCAAGTGCCAGAAAATTATG+TGG | + | chr8.1:9864757-9864776 | None:intergenic | 40.0% | |
| GTGAGTGTCTTTCACTTGTT+TGG | - | chr8.1:9864885-9864904 | MS.gene58720:intron | 40.0% | |
| GTGCCAGAAAATTATGTGGA+AGG | + | chr8.1:9864753-9864772 | None:intergenic | 40.0% | |
| TCAGCTCCAAGTATAGCAAT+TGG | + | chr8.1:9865537-9865556 | None:intergenic | 40.0% | |
| TCGTCCACTGTGATATATGA+TGG | + | chr8.1:9865059-9865078 | None:intergenic | 40.0% | |
| TTTCCTGAGTCCTCTAATCA+AGG | + | chr8.1:9865133-9865152 | None:intergenic | 40.0% | |
| ! | GTGCCTTCCACATAATTTTC+TGG | - | chr8.1:9864747-9864766 | MS.gene58720:intron | 40.0% |
| ! | TCAACATTCTGAGGATCGTA+GGG | + | chr8.1:9864540-9864559 | None:intergenic | 40.0% |
| AGCAACCGGATATTATGTGG+TGG | - | chr8.1:9864491-9864510 | MS.gene58720:CDS | 45.0% | |
| AGTGGACGACATCAAAGGTA+TGG | - | chr8.1:9865070-9865089 | MS.gene58720:intron | 45.0% | |
| ATCACAGTGGACGACATCAA+AGG | - | chr8.1:9865065-9865084 | MS.gene58720:CDS | 45.0% | |
| CACCACCAAGTTTAGCAACA+TGG | + | chr8.1:9864021-9864040 | None:intergenic | 45.0% | |
| CACGTCAGATCTTGTTGGAT+TGG | - | chr8.1:9866082-9866101 | MS.gene58720:CDS | 45.0% | |
| CCTCCGCAAAATACATGAGA+AGG | + | chr8.1:9864129-9864148 | None:intergenic | 45.0% | |
| GCTAAGACTGTGTGTGAACT+TGG | - | chr8.1:9864996-9865015 | MS.gene58720:intron | 45.0% | |
| GGGAACCACCACATAATATC+CGG | + | chr8.1:9864499-9864518 | None:intergenic | 45.0% | |
| GTGAAGGATGTTTGCAGACA+AGG | - | chr8.1:9864464-9864483 | MS.gene58720:CDS | 45.0% | |
| TAAAGACCCAGAAGCTGTGA+AGG | - | chr8.1:9866047-9866066 | MS.gene58720:CDS | 45.0% | |
| TGCAGCAACCGGATATTATG+TGG | - | chr8.1:9864488-9864507 | MS.gene58720:CDS | 45.0% | |
| TTGATACTAAACGCTCCCTC+TGG | - | chr8.1:9864331-9864350 | MS.gene58720:intron | 45.0% | |
| ! | CATGTATTTTGCGGAGGTCA+TGG | - | chr8.1:9864132-9864151 | MS.gene58720:intron | 45.0% |
| ! | CCTTCTCATGTATTTTGCGG+AGG | - | chr8.1:9864126-9864145 | MS.gene58720:intron | 45.0% |
| ! | GTCAACATTCTGAGGATCGT+AGG | + | chr8.1:9864541-9864560 | None:intergenic | 45.0% |
| ! | TGGAGCTGCTGGATTTTGTT+GGG | - | chr8.1:9864859-9864878 | MS.gene58720:intron | 45.0% |
| ! | TTGGAGCTGCTGGATTTTGT+TGG | - | chr8.1:9864858-9864877 | MS.gene58720:intron | 45.0% |
| ! | TTTTCTACTTTGTCTGGGCC+AGG | + | chr8.1:9865866-9865885 | None:intergenic | 45.0% |
| !! | GGTGTTGATGCTTATCTCAC+TGG | - | chr8.1:9864037-9864056 | MS.gene58720:CDS | 45.0% |
| AATGTCGGAGACGAGGAGAA+TGG | + | chr8.1:9864083-9864102 | None:intergenic | 50.0% | |
| AGAAGCTGTGAAGGCTTCAG+AGG | - | chr8.1:9866056-9866075 | MS.gene58720:CDS | 50.0% | |
| CCACTGAAGGAGTTCAGAAC+TGG | + | chr8.1:9863992-9864011 | None:intergenic | 50.0% | |
| CTGAAGCCTTCACAGCTTCT+GGG | + | chr8.1:9866056-9866075 | None:intergenic | 50.0% | |
| CTGAAGGAGTTCAGAACTGG+CGG | + | chr8.1:9863989-9864008 | None:intergenic | 50.0% | |
| GCTGGCCATGTTGCTAAACT+TGG | - | chr8.1:9864013-9864032 | MS.gene58720:CDS | 50.0% | |
| GGCCATGTTGCTAAACTTGG+TGG | - | chr8.1:9864016-9864035 | MS.gene58720:CDS | 50.0% | |
| GTGGTTCCCGACTTCTTCAA+CGG | - | chr8.1:9864510-9864529 | MS.gene58720:CDS | 50.0% | |
| TACCGAAAATGTCGGAGACG+AGG | + | chr8.1:9864090-9864109 | None:intergenic | 50.0% | |
| TCTCGCATGGCTGGACTATA+AGG | - | chr8.1:9866016-9866035 | MS.gene58720:CDS | 50.0% | |
| TGAAGGAGTTCAGAACTGGC+GGG | + | chr8.1:9863988-9864007 | None:intergenic | 50.0% | |
| TTCCTAATGTCTCGCATGGC+TGG | - | chr8.1:9866007-9866026 | MS.gene58720:CDS | 50.0% | |
| ! | AGAATGGCGAAGGTGCAAAG+AGG | + | chr8.1:9864067-9864086 | None:intergenic | 50.0% |
| ! | CTCCTCGTCTCCGACATTTT+CGG | - | chr8.1:9864085-9864104 | MS.gene58720:intron | 50.0% |
| ! | GGAGCTGCTGGATTTTGTTG+GGG | - | chr8.1:9864860-9864879 | MS.gene58720:intron | 50.0% |
| ! | TCTGAAGCCTTCACAGCTTC+TGG | + | chr8.1:9866057-9866076 | None:intergenic | 50.0% |
| ! | TGACCTCTGGAGGAGTAACT+TGG | + | chr8.1:9865566-9865585 | None:intergenic | 50.0% |
| !! | CCAGTTCTGAACTCCTTCAG+TGG | - | chr8.1:9863989-9864008 | MS.gene58720:CDS | 50.0% |
| AACATGGCCAGCACCACTGA+AGG | + | chr8.1:9864005-9864024 | None:intergenic | 55.0% | |
| AGCTGTGAAGGCTTCAGAGG+AGG | - | chr8.1:9866059-9866078 | MS.gene58720:CDS | 55.0% | |
| CACGGCAGCTTGGATGAGTT+TGG | + | chr8.1:9865027-9865046 | None:intergenic | 55.0% | |
| CGACCAAGTTACTCCTCCAG+AGG | - | chr8.1:9865560-9865579 | MS.gene58720:CDS | 55.0% | |
| CTGAACTCCTTCAGTGGTGC+TGG | - | chr8.1:9863995-9864014 | MS.gene58720:CDS | 55.0% | |
| GATGTGCTAACACGGCAGCT+TGG | + | chr8.1:9865037-9865056 | None:intergenic | 55.0% | |
| GCAGACAAGGTTGCAGCAAC+CGG | - | chr8.1:9864477-9864496 | MS.gene58720:CDS | 55.0% | |
| GGATCGCCGTTGAAGAAGTC+GGG | + | chr8.1:9864519-9864538 | None:intergenic | 55.0% | |
| GGGATCGCCGTTGAAGAAGT+CGG | + | chr8.1:9864520-9864539 | None:intergenic | 55.0% | |
| GTCCAGCCATGCGAGACATT+AGG | + | chr8.1:9866012-9866031 | None:intergenic | 55.0% | |
| ! | GCTGCTGGATTTTGTTGGGG+TGG | - | chr8.1:9864863-9864882 | MS.gene58720:intron | 55.0% |
| ! | GGAGGCACGTCAGATCTTGT+TGG | - | chr8.1:9866077-9866096 | MS.gene58720:CDS | 55.0% |
| GGAGACGAGGAGAATGGCGA+AGG | + | chr8.1:9864077-9864096 | None:intergenic | 60.0% | |
| ! | GGCGGGTTTGAGCAGCATGC+CGG | + | chr8.1:9863971-9863990 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 9863959 | 9866125 | 9863959 | ID=MS.gene58720 |
| chr8.1 | mRNA | 9863959 | 9866125 | 9863959 | ID=MS.gene58720.t1;Parent=MS.gene58720 |
| chr8.1 | exon | 9865978 | 9866125 | 9865978 | ID=MS.gene58720.t1.exon1;Parent=MS.gene58720.t1 |
| chr8.1 | CDS | 9865978 | 9866125 | 9865978 | ID=cds.MS.gene58720.t1;Parent=MS.gene58720.t1 |
| chr8.1 | exon | 9865803 | 9865824 | 9865803 | ID=MS.gene58720.t1.exon2;Parent=MS.gene58720.t1 |
| chr8.1 | CDS | 9865803 | 9865824 | 9865803 | ID=cds.MS.gene58720.t1;Parent=MS.gene58720.t1 |
| chr8.1 | exon | 9865488 | 9865614 | 9865488 | ID=MS.gene58720.t1.exon3;Parent=MS.gene58720.t1 |
| chr8.1 | CDS | 9865488 | 9865614 | 9865488 | ID=cds.MS.gene58720.t1;Parent=MS.gene58720.t1 |
| chr8.1 | exon | 9865200 | 9865290 | 9865200 | ID=MS.gene58720.t1.exon4;Parent=MS.gene58720.t1 |
| chr8.1 | CDS | 9865200 | 9865290 | 9865200 | ID=cds.MS.gene58720.t1;Parent=MS.gene58720.t1 |
| chr8.1 | exon | 9864998 | 9865087 | 9864998 | ID=MS.gene58720.t1.exon5;Parent=MS.gene58720.t1 |
| chr8.1 | CDS | 9864998 | 9865087 | 9864998 | ID=cds.MS.gene58720.t1;Parent=MS.gene58720.t1 |
| chr8.1 | exon | 9864461 | 9864561 | 9864461 | ID=MS.gene58720.t1.exon6;Parent=MS.gene58720.t1 |
| chr8.1 | CDS | 9864461 | 9864561 | 9864461 | ID=cds.MS.gene58720.t1;Parent=MS.gene58720.t1 |
| chr8.1 | exon | 9863959 | 9864099 | 9863959 | ID=MS.gene58720.t1.exon7;Parent=MS.gene58720.t1 |
| chr8.1 | CDS | 9863959 | 9864099 | 9863959 | ID=cds.MS.gene58720.t1;Parent=MS.gene58720.t1 |
| Gene Sequence |
| Protein sequence |
