Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59347.t1 | XP_003611962.2 | 97.9 | 382 | 8 | 0 | 1 | 382 | 69 | 450 | 1.80E-211 | 745 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59347.t1 | Q9SUK9 | 63.9 | 296 | 105 | 2 | 87 | 382 | 171 | 464 | 2.0e-102 | 374.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59347.t1 | G7KC88 | 97.9 | 382 | 8 | 0 | 1 | 382 | 69 | 450 | 1.3e-211 | 745.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene59347 | 0.814277 | 1.67E-51 | -1.69E-46 |
| MS.gene049284 | MS.gene59347 | 0.806236 | 9.07E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene59347 | 0.80809 | 3.67E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene59347 | 0.818557 | 1.84E-52 | -1.69E-46 |
| MS.gene049491 | MS.gene59347 | 0.805105 | 1.57E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene59347 | 0.815465 | 9.12E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene59347 | 0.807122 | 5.90E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene59347 | 0.821517 | 3.87E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene59347 | 0.828182 | 1.04E-54 | -1.69E-46 |
| MS.gene050397 | MS.gene59347 | 0.801001 | 1.11E-48 | -1.69E-46 |
| MS.gene050404 | MS.gene59347 | 0.807392 | 5.17E-50 | -1.69E-46 |
| MS.gene050406 | MS.gene59347 | 0.802931 | 4.44E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene59347 | 0.81589 | 7.33E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene59347 | 0.834466 | 2.95E-56 | -1.69E-46 |
| MS.gene050812 | MS.gene59347 | 0.828719 | 7.69E-55 | -1.69E-46 |
| MS.gene05101 | MS.gene59347 | 0.817285 | 3.57E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene59347 | 0.819566 | 1.09E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene59347 | 0.806951 | 6.41E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene59347 | 0.812478 | 4.15E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene59347 | 0.871368 | 7.21E-67 | -1.69E-46 |
| MS.gene052253 | MS.gene59347 | 0.829635 | 4.61E-55 | -1.69E-46 |
| MS.gene052290 | MS.gene59347 | 0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene052310 | MS.gene59347 | 0.864934 | 8.50E-65 | -1.69E-46 |
| MS.gene052326 | MS.gene59347 | 0.802776 | 4.78E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene59347 | 0.837089 | 6.38E-57 | -1.69E-46 |
| MS.gene052421 | MS.gene59347 | 0.821886 | 3.18E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene59347 | 0.809916 | 1.49E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene59347 | 0.805654 | 1.20E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene59347 | 0.802081 | 6.64E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene59347 | 0.810248 | 1.27E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene59347 | 0.825221 | 5.28E-54 | -1.69E-46 |
| MS.gene054123 | MS.gene59347 | 0.871671 | 5.72E-67 | -1.69E-46 |
| MS.gene054349 | MS.gene59347 | 0.829488 | 5.00E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene59347 | 0.81743 | 3.31E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene59347 | 0.819229 | 1.30E-52 | -1.69E-46 |
| MS.gene055412 | MS.gene59347 | 0.833832 | 4.25E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene59347 | 0.800344 | 1.51E-48 | -1.69E-46 |
| MS.gene055428 | MS.gene59347 | 0.816487 | 5.39E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene59347 | 0.825246 | 5.20E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene59347 | 0.823439 | 1.38E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene59347 | 0.833163 | 6.24E-56 | -1.69E-46 |
| MS.gene056612 | MS.gene59347 | 0.828999 | 6.58E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene59347 | 0.872252 | 3.67E-67 | -1.69E-46 |
| MS.gene056664 | MS.gene59347 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene056719 | MS.gene59347 | 0.8096 | 1.75E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene59347 | 0.855455 | 6.24E-62 | -1.69E-46 |
| MS.gene057123 | MS.gene59347 | 0.819312 | 1.24E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene59347 | 0.808513 | 2.98E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene59347 | 0.811909 | 5.53E-51 | -1.69E-46 |
| MS.gene05733 | MS.gene59347 | 0.807655 | 4.54E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene59347 | 0.844893 | 5.70E-59 | -1.69E-46 |
| MS.gene057823 | MS.gene59347 | 0.84438 | 7.84E-59 | -1.69E-46 |
| MS.gene058002 | MS.gene59347 | 0.824189 | 9.24E-54 | -1.69E-46 |
| MS.gene058007 | MS.gene59347 | 0.825681 | 4.10E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene59347 | 0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene59347 | 0.810779 | 9.73E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene59347 | 0.865496 | 5.66E-65 | -1.69E-46 |
| MS.gene058365 | MS.gene59347 | 0.841989 | 3.40E-58 | -1.69E-46 |
| MS.gene058660 | MS.gene59347 | 0.85908 | 5.29E-63 | -1.69E-46 |
| MS.gene058710 | MS.gene59347 | 0.802257 | 6.11E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene59347 | 0.846194 | 2.53E-59 | -1.69E-46 |
| MS.gene05907 | MS.gene59347 | 0.832873 | 7.37E-56 | -1.69E-46 |
| MS.gene059285 | MS.gene59347 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene59347 | 0.872948 | 2.15E-67 | -1.69E-46 |
| MS.gene059676 | MS.gene59347 | 0.845909 | 3.03E-59 | -1.69E-46 |
| MS.gene059688 | MS.gene59347 | 0.856931 | 2.30E-62 | -1.69E-46 |
| MS.gene059692 | MS.gene59347 | 0.856841 | 2.45E-62 | -1.69E-46 |
| MS.gene059695 | MS.gene59347 | 0.857995 | 1.12E-62 | -1.69E-46 |
| MS.gene059894 | MS.gene59347 | 0.827888 | 1.22E-54 | -1.69E-46 |
| MS.gene060247 | MS.gene59347 | 0.801888 | 7.28E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene59347 | 0.809875 | 1.52E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene59347 | 0.835851 | 1.32E-56 | -1.69E-46 |
| MS.gene061041 | MS.gene59347 | 0.812576 | 3.96E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene59347 | 0.859336 | 4.44E-63 | -1.69E-46 |
| MS.gene061051 | MS.gene59347 | -0.80978 | 1.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59347.t1 | MTR_5g019790 | 97.906 | 382 | 8 | 0 | 1 | 382 | 69 | 450 | 0.0 | 773 |
| MS.gene59347.t1 | MTR_1g022030 | 64.952 | 311 | 98 | 4 | 71 | 379 | 204 | 505 | 1.08e-134 | 395 |
| MS.gene59347.t1 | MTR_3g031360 | 38.281 | 256 | 136 | 7 | 138 | 379 | 62 | 309 | 5.31e-41 | 147 |
| MS.gene59347.t1 | MTR_2g008590 | 35.433 | 254 | 158 | 4 | 128 | 379 | 1007 | 1256 | 4.02e-40 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59347.t1 | AT4G16580 | 63.851 | 296 | 105 | 2 | 87 | 382 | 171 | 464 | 8.12e-132 | 386 |
| MS.gene59347.t1 | AT5G66720 | 53.590 | 390 | 147 | 7 | 1 | 379 | 48 | 414 | 1.97e-130 | 380 |
| MS.gene59347.t1 | AT5G66720 | 53.506 | 385 | 152 | 6 | 1 | 379 | 48 | 411 | 3.85e-129 | 377 |
| MS.gene59347.t1 | AT4G33500 | 40.637 | 251 | 142 | 4 | 128 | 376 | 474 | 719 | 4.42e-50 | 179 |
| MS.gene59347.t1 | AT2G30170 | 35.849 | 265 | 147 | 8 | 130 | 379 | 42 | 298 | 3.69e-45 | 157 |
| MS.gene59347.t1 | AT2G30170 | 38.974 | 195 | 111 | 6 | 130 | 320 | 7 | 197 | 1.36e-37 | 135 |
| MS.gene59347.t1 | AT2G30170 | 34.934 | 229 | 127 | 7 | 165 | 379 | 1 | 221 | 1.92e-37 | 135 |
| MS.gene59347.t1 | AT2G30170 | 38.974 | 195 | 111 | 6 | 130 | 320 | 42 | 232 | 4.89e-37 | 135 |
| MS.gene59347.t1 | AT2G30170 | 38.365 | 159 | 91 | 5 | 165 | 320 | 1 | 155 | 7.13e-30 | 114 |
| MS.gene59347.t1 | AT2G30170 | 38.255 | 149 | 87 | 4 | 130 | 275 | 42 | 188 | 5.30e-27 | 107 |
| MS.gene59347.t1 | AT2G30170 | 34.641 | 153 | 82 | 4 | 239 | 379 | 12 | 158 | 2.23e-21 | 90.1 |
Find 101 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTAAATGCTATTAATT+TGG | 0.082909 | 5.4:-12047938 | MS.gene59347:CDS |
| TTCACCTTCCAATGCTATTC+TGG | 0.118484 | 5.4:-12050053 | MS.gene59347:CDS |
| TTGCAGATGGTGTTGGTGGC+TGG | 0.202067 | 5.4:-12048649 | MS.gene59347:CDS |
| TGTATGGTCCTTTGAATTTC+GGG | 0.205284 | 5.4:-12049889 | MS.gene59347:CDS |
| TTGTATGGTCCTTTGAATTT+CGG | 0.224793 | 5.4:-12049890 | MS.gene59347:CDS |
| CCGCTCCTCGCCAATTGATA+TGG | 0.249497 | 5.4:+12047838 | None:intergenic |
| CAGAATTCGGGTTTGCTTCA+TGG | 0.278734 | 5.4:-12049836 | MS.gene59347:CDS |
| TCAGCTGCTGCTCTCGAGTA+TGG | 0.284904 | 5.4:-12047492 | MS.gene59347:CDS |
| GCCTTCTCTAACACCCTTAC+TGG | 0.296839 | 5.4:+12048533 | None:intergenic |
| TCGAATTGCTCTTGCGGAAT+TGG | 0.307860 | 5.4:+12048580 | None:intergenic |
| TATTCTGCTTGCTGCTTGGC+TGG | 0.313286 | 5.4:-12049785 | MS.gene59347:CDS |
| TACTGGATTAAAAGAACCTT+TGG | 0.317637 | 5.4:+12048550 | None:intergenic |
| CGGAATTGGCTACAAGTTCC+TGG | 0.321023 | 5.4:+12048594 | None:intergenic |
| GCACTAAATGCTATTAATTT+GGG | 0.330419 | 5.4:-12047937 | MS.gene59347:CDS |
| TCGAGAGCAGCAGCTGAAAA+TGG | 0.337984 | 5.4:+12047498 | None:intergenic |
| TTGAACCCGCGTTGTTGAAC+AGG | 0.339753 | 5.4:+12047865 | None:intergenic |
| TAGTTGGAGGATTCAGAATT+CGG | 0.347094 | 5.4:-12049849 | MS.gene59347:CDS |
| GGATTCATTGTGATAAGAAA+TGG | 0.353829 | 5.4:-12047907 | MS.gene59347:CDS |
| GCTATTAATTTGGGTGATAG+TGG | 0.356777 | 5.4:-12047928 | MS.gene59347:CDS |
| TCACCTTCCAATGCTATTCT+GGG | 0.384802 | 5.4:-12050052 | MS.gene59347:CDS |
| ATCTTATTCTGCTTGCTGCT+TGG | 0.390535 | 5.4:-12049789 | MS.gene59347:CDS |
| CCAGGAGATATCATTGTTGC+TGG | 0.394796 | 5.4:-12047669 | MS.gene59347:CDS |
| AAGCCCTTGAAGATGTTATC+AGG | 0.397966 | 5.4:-12048758 | MS.gene59347:CDS |
| GAGTTTGAGAAGACCGCAAC+AGG | 0.399205 | 5.4:-12049915 | MS.gene59347:CDS |
| TGCAGATGGTGTTGGTGGCT+GGG | 0.399726 | 5.4:-12048648 | MS.gene59347:CDS |
| CGCTCCTCGCCAATTGATAT+GGG | 0.403739 | 5.4:+12047839 | None:intergenic |
| TTCAAGGGAAGAACTCATAA+AGG | 0.409592 | 5.4:-12049956 | MS.gene59347:CDS |
| GTTCAATTTCCCATATCAAT+TGG | 0.409645 | 5.4:-12047848 | MS.gene59347:CDS |
| TCAAGGGAAGAACTCATAAA+GGG | 0.414978 | 5.4:-12049955 | MS.gene59347:CDS |
| ATGATATCTCCTGGAGCAAC+AGG | 0.431491 | 5.4:+12047678 | None:intergenic |
| GAGTATGGATACCGGTTTGA+TGG | 0.432535 | 5.4:-12047477 | MS.gene59347:CDS |
| GATATTGTTGGAGTGGTTGT+AGG | 0.433182 | 5.4:-12047612 | MS.gene59347:CDS |
| CAGCCCTCCTGATGAACAAC+TGG | 0.434352 | 5.4:-12049735 | MS.gene59347:CDS |
| GTTGGTGGCTGGGCAGATGT+TGG | 0.436846 | 5.4:-12048638 | MS.gene59347:CDS |
| AGTTGGAGGATTCAGAATTC+GGG | 0.439453 | 5.4:-12049848 | MS.gene59347:CDS |
| GCATGCTGGTGTGTACTTCA+AGG | 0.449823 | 5.4:-12049972 | MS.gene59347:CDS |
| AGCGAGCTCTTGACACGAAA+AGG | 0.460925 | 5.4:-12047527 | MS.gene59347:CDS |
| TGATCCTGATAACATCTTCA+AGG | 0.461298 | 5.4:+12048754 | None:intergenic |
| CAGTTGTTCATCAGGAGGGC+TGG | 0.467010 | 5.4:+12049736 | None:intergenic |
| ACTGGATTAAAAGAACCTTT+GGG | 0.468734 | 5.4:+12048551 | None:intergenic |
| TGTAAGACACGACAACTGTT+AGG | 0.469269 | 5.4:+12047439 | None:intergenic |
| ATCATTGTTGCTGGAACAGA+TGG | 0.479550 | 5.4:-12047660 | MS.gene59347:CDS |
| ATATCACTCATTGACTGAGC+TGG | 0.489631 | 5.4:+12047413 | None:intergenic |
| TTTACAGTACCTGTTGCTCC+AGG | 0.495219 | 5.4:-12047687 | MS.gene59347:CDS |
| ATGTACAACAATGATATTGT+TGG | 0.496451 | 5.4:-12047624 | MS.gene59347:CDS |
| TGCTCAGAAGATAGCAGCAT+TGG | 0.497423 | 5.4:-12047556 | MS.gene59347:CDS |
| AACATCTCCCAGAATAGCAT+TGG | 0.499454 | 5.4:+12050045 | None:intergenic |
| CACGTACATGTTAGCCAAAG+TGG | 0.502945 | 5.4:+12049703 | None:intergenic |
| CCAGCAACAATGATATCTCC+TGG | 0.503201 | 5.4:+12047669 | None:intergenic |
| TGTGAAGATGAACAAGCAAT+TGG | 0.507426 | 5.4:-12048674 | MS.gene59347:CDS |
| GATTCATTGTGATAAGAAAT+GGG | 0.509981 | 5.4:-12047906 | MS.gene59347:CDS |
| CCTCCAACTAGCATCAAAAG+TGG | 0.518120 | 5.4:+12049862 | None:intergenic |
| ATCCAGATAAGGTGGCGACT+GGG | 0.519570 | 5.4:-12048718 | MS.gene59347:CDS |
| CATCCAGATAAGGTGGCGAC+TGG | 0.520452 | 5.4:-12048719 | MS.gene59347:CDS |
| ATCTTCTGAGCAGTTGCTTG+TGG | 0.525652 | 5.4:+12047567 | None:intergenic |
| CAAGTTTGCCTCCATCAAAC+CGG | 0.526235 | 5.4:+12047466 | None:intergenic |
| ACTGGAAAACTCCTCCACTT+TGG | 0.533832 | 5.4:-12049717 | MS.gene59347:CDS |
| CAAGATTTCACAAAGCATGC+TGG | 0.538735 | 5.4:-12049986 | MS.gene59347:CDS |
| GGTGCAACTAGAGCTAGATT+AGG | 0.539864 | 5.4:-12047591 | MS.gene59347:CDS |
| AGAGCTAGGTAGATCACCTT+CGG | 0.542202 | 5.4:+12047813 | None:intergenic |
| ATTGGTGTTGCAGATGGTGT+TGG | 0.543019 | 5.4:-12048656 | MS.gene59347:CDS |
| TTTCCAGTTGTTCATCAGGA+GGG | 0.543076 | 5.4:+12049732 | None:intergenic |
| GAAGGTGATCTACCTAGCTC+TGG | 0.545796 | 5.4:-12047811 | MS.gene59347:CDS |
| TTCCTCTCGAATTGCTCTTG+CGG | 0.547274 | 5.4:+12048574 | None:intergenic |
| GGTGTTGCAGATGGTGTTGG+TGG | 0.549063 | 5.4:-12048653 | MS.gene59347:CDS |
| GTCGAGAAATTCTTTGTCCA+CGG | 0.551550 | 5.4:+12049812 | None:intergenic |
| TCCAGATAAGGTGGCGACTG+GGG | 0.551906 | 5.4:-12048717 | MS.gene59347:CDS |
| AACTTTACCTCGCCAGAGCT+AGG | 0.556889 | 5.4:+12047799 | None:intergenic |
| CATGCTGGTGTGTACTTCAA+GGG | 0.557081 | 5.4:-12049971 | MS.gene59347:CDS |
| GTCGCCACCTTATCTGGATG+TGG | 0.559731 | 5.4:+12048722 | None:intergenic |
| CTGCTCTCGAGTATGGATAC+CGG | 0.564123 | 5.4:-12047485 | MS.gene59347:CDS |
| GGAATTGGCTACAAGTTCCT+GGG | 0.570141 | 5.4:+12048595 | None:intergenic |
| GTGGAACGCCCGAAATTCAA+AGG | 0.571207 | 5.4:+12049881 | None:intergenic |
| CGGGTTTGCTTCATGGACCG+TGG | 0.571395 | 5.4:-12049829 | MS.gene59347:CDS |
| TGAACCCGCGTTGTTGAACA+GGG | 0.574747 | 5.4:+12047866 | None:intergenic |
| TTACCTACCACATCCAGATA+AGG | 0.576882 | 5.4:-12048729 | MS.gene59347:CDS |
| TCCAGTAAGGGTGTTAGAGA+AGG | 0.582497 | 5.4:-12048534 | MS.gene59347:CDS |
| TATCATTGCTCTTATCGATG+AGG | 0.593917 | 5.4:-12048471 | MS.gene59347:intron |
| GCAGATGTTGGTGTTAATGC+AGG | 0.595326 | 5.4:-12048626 | MS.gene59347:CDS |
| CCATATCAATTGGCGAGGAG+CGG | 0.596295 | 5.4:-12047838 | MS.gene59347:CDS |
| CCAGATAAGGTGGCGACTGG+GGG | 0.601048 | 5.4:-12048716 | MS.gene59347:CDS |
| GATCCTGATAACATCTTCAA+GGG | 0.603871 | 5.4:+12048755 | None:intergenic |
| CAAGCAATTGGTGTTGCAGA+TGG | 0.607010 | 5.4:-12048662 | MS.gene59347:CDS |
| CCACCTTATCTGGATGTGGT+AGG | 0.607414 | 5.4:+12048726 | None:intergenic |
| CAACAATGATATTGTTGGAG+TGG | 0.615629 | 5.4:-12047619 | MS.gene59347:CDS |
| TTGGCGAGGAGCGGTACCGA+AGG | 0.618376 | 5.4:-12047829 | MS.gene59347:CDS |
| AGTCCCCTGTTCAACAACGC+GGG | 0.619635 | 5.4:-12047870 | MS.gene59347:CDS |
| TAATGCAGGACTGTATGCCC+AGG | 0.622814 | 5.4:-12048612 | MS.gene59347:CDS |
| GGACCATACAAAACCTGTTG+CGG | 0.623270 | 5.4:+12049902 | None:intergenic |
| AGCAATGATACAAACAGTTG+AGG | 0.624236 | 5.4:+12048484 | None:intergenic |
| ATTTCCCATATCAATTGGCG+AGG | 0.641059 | 5.4:-12047843 | MS.gene59347:CDS |
| TATGGATACCGGTTTGATGG+AGG | 0.642458 | 5.4:-12047474 | MS.gene59347:CDS |
| TCTCCCAGAATAGCATTGGA+AGG | 0.642675 | 5.4:+12050049 | None:intergenic |
| CCTACCACATCCAGATAAGG+TGG | 0.648319 | 5.4:-12048726 | MS.gene59347:CDS |
| TGATCTACCTAGCTCTGGCG+AGG | 0.657103 | 5.4:-12047806 | MS.gene59347:intron |
| ACTCATAAAGGGTTTGTGCG+AGG | 0.664894 | 5.4:-12049944 | MS.gene59347:CDS |
| TTCCGCAAGAGCAATTCGAG+AGG | 0.688045 | 5.4:-12048576 | MS.gene59347:CDS |
| GCAATTCGAGAGGAACCCAA+AGG | 0.688593 | 5.4:-12048566 | MS.gene59347:CDS |
| AAGTCCCCTGTTCAACAACG+CGG | 0.711155 | 5.4:-12047871 | MS.gene59347:CDS |
| GTACATGTTAGCCAAAGTGG+AGG | 0.719821 | 5.4:+12049706 | None:intergenic |
| GAACCCGCGTTGTTGAACAG+GGG | 0.730041 | 5.4:+12047867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATATTACAGAAATTTT+AGG | - | chr5.4:12047999-12048018 | MS.gene59347:intron | 10.0% |
| !! | GAATTAATTAAATAACAACT+TGG | - | chr5.4:12048195-12048214 | MS.gene59347:intron | 15.0% |
| !!! | TAAATCATGGTTTTAAATTA+TGG | + | chr5.4:12048124-12048143 | None:intergenic | 15.0% |
| !! | AAAGAATGAAAATTAATCAG+TGG | + | chr5.4:12049499-12049518 | None:intergenic | 20.0% |
| !! | TATTTAATTGATTGAGTAAC+AGG | + | chr5.4:12049319-12049338 | None:intergenic | 20.0% |
| !! | TATTTATGTTGTTGAAATAG+AGG | - | chr5.4:12047879-12047898 | MS.gene59347:CDS | 20.0% |
| !! | TCTATTTCAACAACATAAAT+AGG | + | chr5.4:12047880-12047899 | None:intergenic | 20.0% |
| !! | TTATTTAATTAATTCGTGAC+AGG | + | chr5.4:12048190-12048209 | None:intergenic | 20.0% |
| !!! | TGATTAATTTTCATTCTTTG+TGG | - | chr5.4:12049500-12049519 | MS.gene59347:intron | 20.0% |
| ! | AAACCTTTATATTACTGATG+CGG | - | chr5.4:12048091-12048110 | MS.gene59347:intron | 25.0% |
| ! | AAGTTTATCAATTTATGTGC+AGG | - | chr5.4:12049765-12049784 | MS.gene59347:CDS | 25.0% |
| ! | AATACAGCTAAAATACCAAT+CGG | + | chr5.4:12049404-12049423 | None:intergenic | 25.0% |
| ! | ATGTACAACAATGATATTGT+TGG | - | chr5.4:12049853-12049872 | MS.gene59347:CDS | 25.0% |
| ! | GACATTGTACTTAAAAACTT+AGG | + | chr5.4:12049382-12049401 | None:intergenic | 25.0% |
| ! | GATTCATTGTGATAAGAAAT+GGG | - | chr5.4:12049571-12049590 | MS.gene59347:intron | 25.0% |
| ! | GCACTAAATGCTATTAATTT+GGG | - | chr5.4:12049540-12049559 | MS.gene59347:intron | 25.0% |
| ! | TATTAGAGAAACCATTAGAA+AGG | - | chr5.4:12048552-12048571 | MS.gene59347:CDS | 25.0% |
| ! | TTCAACAACATAAATAGGAT+AGG | + | chr5.4:12047875-12047894 | None:intergenic | 25.0% |
| !! | AATTTTGTACAATTCATGTC+TGG | - | chr5.4:12049166-12049185 | MS.gene59347:intron | 25.0% |
| !! | CATCAGTAATATAAAGGTTT+TGG | + | chr5.4:12048091-12048110 | None:intergenic | 25.0% |
| !! | TTGTTTTCTTTTCATCAACA+TGG | - | chr5.4:12049142-12049161 | MS.gene59347:intron | 25.0% |
| AACCATTAGAAAGGATTTAG+AGG | - | chr5.4:12048561-12048580 | MS.gene59347:CDS | 30.0% | |
| AACCTTTATATTACTGATGC+GGG | - | chr5.4:12048092-12048111 | MS.gene59347:intron | 30.0% | |
| AATACAAGTATTCAATGCTC+AGG | + | chr5.4:12048678-12048697 | None:intergenic | 30.0% | |
| AATGCTCAGGATAAGTAAAT+GGG | + | chr5.4:12048665-12048684 | None:intergenic | 30.0% | |
| AATTAATAGCATTTAGTGCC+TGG | + | chr5.4:12049539-12049558 | None:intergenic | 30.0% | |
| ACTGGATTAAAAGAACCTTT+GGG | + | chr5.4:12048929-12048948 | None:intergenic | 30.0% | |
| ATTAAATAACAACTTGGCAG+CGG | - | chr5.4:12048201-12048220 | MS.gene59347:intron | 30.0% | |
| ATTCTTTGTGGTTGTTTACT+TGG | - | chr5.4:12049512-12049531 | MS.gene59347:intron | 30.0% | |
| CATAAATAGGATAGGCTTAT+TGG | + | chr5.4:12047867-12047886 | None:intergenic | 30.0% | |
| GGATTCATTGTGATAAGAAA+TGG | - | chr5.4:12049570-12049589 | MS.gene59347:intron | 30.0% | |
| GGCACTAAATGCTATTAATT+TGG | - | chr5.4:12049539-12049558 | MS.gene59347:intron | 30.0% | |
| GTACTTAAAAACTTAGGACT+CGG | + | chr5.4:12049376-12049395 | None:intergenic | 30.0% | |
| GTTCAATTTCCCATATCAAT+TGG | - | chr5.4:12049629-12049648 | MS.gene59347:intron | 30.0% | |
| TACTGGATTAAAAGAACCTT+TGG | + | chr5.4:12048930-12048949 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | - | chr5.4:12048486-12048505 | MS.gene59347:CDS | 30.0% | |
| TTATACTACTACGTGTTGTA+TGG | - | chr5.4:12048249-12048268 | MS.gene59347:intron | 30.0% | |
| TTGATCTACTCTTCTTACAA+CGG | + | chr5.4:12048485-12048504 | None:intergenic | 30.0% | |
| TTGTATGGTCCTTTGAATTT+CGG | - | chr5.4:12047587-12047606 | MS.gene59347:CDS | 30.0% | |
| ! | AAGGTTCTTTTAATCCAGTA+AGG | - | chr5.4:12048930-12048949 | MS.gene59347:intron | 30.0% |
| ! | AAGTTTTCAATTGCACTATG+CGG | - | chr5.4:12048032-12048051 | MS.gene59347:intron | 30.0% |
| ! | AGGTTCTTTTAATCCAGTAA+GGG | - | chr5.4:12048931-12048950 | MS.gene59347:intron | 30.0% |
| ! | GTTTCTCTAATAGTTTTCCT+AGG | + | chr5.4:12048544-12048563 | None:intergenic | 30.0% |
| !! | TAGAGAAGTTGGTAGAAAAT+AGG | - | chr5.4:12048418-12048437 | MS.gene59347:intron | 30.0% |
| !! | TTTTAAGTACAATGTCCGAT+TGG | - | chr5.4:12049386-12049405 | MS.gene59347:intron | 30.0% |
| !!! | TTCTCCAAACTTCTTGTTTT+GGG | - | chr5.4:12049230-12049249 | MS.gene59347:intron | 30.0% |
| AAACTTCAATCTCCATTGCT+AGG | + | chr5.4:12049723-12049742 | None:intergenic | 35.0% | |
| AAAGAGGTAAAGAAAGACCT+AGG | - | chr5.4:12048524-12048543 | MS.gene59347:CDS | 35.0% | |
| AACCCGCATCAGTAATATAA+AGG | + | chr5.4:12048097-12048116 | None:intergenic | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr5.4:12048489-12048508 | MS.gene59347:CDS | 35.0% | |
| AATGCAGTATGTAGTTGTAG+TGG | - | chr5.4:12047959-12047978 | MS.gene59347:intron | 35.0% | |
| ACAAACTAGACACTTGTTTG+TGG | + | chr5.4:12049292-12049311 | None:intergenic | 35.0% | |
| AGAATGCATATCAAGACTCA+TGG | + | chr5.4:12049211-12049230 | None:intergenic | 35.0% | |
| AGCAATGATACAAACAGTTG+AGG | + | chr5.4:12048996-12049015 | None:intergenic | 35.0% | |
| ATCTCACTGGAAATCAGTAA+TGG | + | chr5.4:12048158-12048177 | None:intergenic | 35.0% | |
| CAACAATGATATTGTTGGAG+TGG | - | chr5.4:12049858-12049877 | MS.gene59347:CDS | 35.0% | |
| CAATGCTCAGGATAAGTAAA+TGG | + | chr5.4:12048666-12048685 | None:intergenic | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr5.4:12048432-12048451 | MS.gene59347:intron | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | + | chr5.4:12048566-12048585 | None:intergenic | 35.0% | |
| GATCCTGATAACATCTTCAA+GGG | + | chr5.4:12048725-12048744 | None:intergenic | 35.0% | |
| GGTGAGGAGAATATAAATCA+TGG | + | chr5.4:12048137-12048156 | None:intergenic | 35.0% | |
| TAAAACCACAATCCTAGCAA+TGG | - | chr5.4:12049708-12049727 | MS.gene59347:intron | 35.0% | |
| TAGGATAGGCTTATTGGTAT+TGG | + | chr5.4:12047861-12047880 | None:intergenic | 35.0% | |
| TAGTTGGAGGATTCAGAATT+CGG | - | chr5.4:12047628-12047647 | MS.gene59347:CDS | 35.0% | |
| TATCATTGCTCTTATCGATG+AGG | - | chr5.4:12049006-12049025 | MS.gene59347:intron | 35.0% | |
| TATCCCCAAAACAAGAAGTT+TGG | + | chr5.4:12049237-12049256 | None:intergenic | 35.0% | |
| TCAAGGGAAGAACTCATAAA+GGG | - | chr5.4:12047522-12047541 | MS.gene59347:CDS | 35.0% | |
| TCTACCAACTTCTCTACTAT+AGG | + | chr5.4:12048414-12048433 | None:intergenic | 35.0% | |
| TGATCCTGATAACATCTTCA+AGG | + | chr5.4:12048726-12048745 | None:intergenic | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | chr5.4:12048427-12048446 | MS.gene59347:intron | 35.0% | |
| TGTATGGTCCTTTGAATTTC+GGG | - | chr5.4:12047588-12047607 | MS.gene59347:CDS | 35.0% | |
| TGTGAAGATGAACAAGCAAT+TGG | - | chr5.4:12048803-12048822 | MS.gene59347:intron | 35.0% | |
| TTAATTCGTGACAGGAAACT+TGG | + | chr5.4:12048182-12048201 | None:intergenic | 35.0% | |
| TTCAAGGGAAGAACTCATAA+AGG | - | chr5.4:12047521-12047540 | MS.gene59347:CDS | 35.0% | |
| TTCTCTACAGTCTACAAAAC+TGG | - | chr5.4:12049260-12049279 | MS.gene59347:intron | 35.0% | |
| ! | GCTATTAATTTGGGTGATAG+TGG | - | chr5.4:12049549-12049568 | MS.gene59347:intron | 35.0% |
| !! | CTTCTCCAAACTTCTTGTTT+TGG | - | chr5.4:12049229-12049248 | MS.gene59347:intron | 35.0% |
| !!! | TCTCCAAACTTCTTGTTTTG+GGG | - | chr5.4:12049231-12049250 | MS.gene59347:intron | 35.0% |
| AACATCTCCCAGAATAGCAT+TGG | + | chr5.4:12047435-12047454 | None:intergenic | 40.0% | |
| AAGCCCTTGAAGATGTTATC+AGG | - | chr5.4:12048719-12048738 | MS.gene59347:CDS | 40.0% | |
| AATCTCCATTGCTAGGATTG+TGG | + | chr5.4:12049716-12049735 | None:intergenic | 40.0% | |
| ACTGGAAATCAGTAATGGTG+AGG | + | chr5.4:12048153-12048172 | None:intergenic | 40.0% | |
| AGACTAGACAGGATAGGATT+AGG | - | chr5.4:12048355-12048374 | MS.gene59347:intron | 40.0% | |
| AGCACCTATAGTAGAGAAGT+TGG | - | chr5.4:12048407-12048426 | MS.gene59347:intron | 40.0% | |
| AGTTGGAGGATTCAGAATTC+GGG | - | chr5.4:12047629-12047648 | MS.gene59347:CDS | 40.0% | |
| ATCATTGTTGCTGGAACAGA+TGG | - | chr5.4:12049817-12049836 | MS.gene59347:CDS | 40.0% | |
| ATTTCCCATATCAATTGGCG+AGG | - | chr5.4:12049634-12049653 | MS.gene59347:intron | 40.0% | |
| CAAGATTTCACAAAGCATGC+TGG | - | chr5.4:12047491-12047510 | MS.gene59347:CDS | 40.0% | |
| CTACTACGTGTTGTATGGTA+CGG | - | chr5.4:12048254-12048273 | MS.gene59347:intron | 40.0% | |
| GAAGGCTCACTCAAAAACAA+AGG | - | chr5.4:12048961-12048980 | MS.gene59347:intron | 40.0% | |
| GATATTGTTGGAGTGGTTGT+AGG | - | chr5.4:12049865-12049884 | MS.gene59347:CDS | 40.0% | |
| GCTGTATTTCGATTCACTGA+AGG | - | chr5.4:12049416-12049435 | MS.gene59347:intron | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr5.4:12048573-12048592 | MS.gene59347:CDS | 40.0% | |
| GTCGAGAAATTCTTTGTCCA+CGG | + | chr5.4:12047668-12047687 | None:intergenic | 40.0% | |
| TAGACACTTGTTTGTGGTAC+AGG | + | chr5.4:12049286-12049305 | None:intergenic | 40.0% | |
| TCACCTTCCAATGCTATTCT+GGG | - | chr5.4:12047425-12047444 | MS.gene59347:CDS | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | + | chr5.4:12048476-12048495 | None:intergenic | 40.0% | |
| TGTAAGACACGACAACTGTT+AGG | + | chr5.4:12050041-12050060 | None:intergenic | 40.0% | |
| TTACCTACCACATCCAGATA+AGG | - | chr5.4:12048748-12048767 | MS.gene59347:CDS | 40.0% | |
| TTCACCTTCCAATGCTATTC+TGG | - | chr5.4:12047424-12047443 | MS.gene59347:CDS | 40.0% | |
| TTTCCAGTTGTTCATCAGGA+GGG | + | chr5.4:12047748-12047767 | None:intergenic | 40.0% | |
| ! | ATCTTATTCTGCTTGCTGCT+TGG | - | chr5.4:12047688-12047707 | MS.gene59347:CDS | 40.0% |
| ! | GAGTTTTCCAGTTGTTCATC+AGG | + | chr5.4:12047752-12047771 | None:intergenic | 40.0% |
| ! | TTTTCCAGTTGTTCATCAGG+AGG | + | chr5.4:12047749-12047768 | None:intergenic | 40.0% |
| !! | AAGTCAGTTTTGTCGATTGC+AGG | - | chr5.4:12049064-12049083 | MS.gene59347:intron | 40.0% |
| !! | GTTCCACTTTTGATGCTAGT+TGG | - | chr5.4:12047612-12047631 | MS.gene59347:CDS | 40.0% |
| !! | GTTTTGTCGATTGCAGGTTA+AGG | - | chr5.4:12049070-12049089 | MS.gene59347:intron | 40.0% |
| ACACCATTAGAGAGAGAGTG+GGG | - | chr5.4:12048382-12048401 | MS.gene59347:intron | 45.0% | |
| ACTCATAAAGGGTTTGTGCG+AGG | - | chr5.4:12047533-12047552 | MS.gene59347:CDS | 45.0% | |
| ACTGGAAAACTCCTCCACTT+TGG | - | chr5.4:12047760-12047779 | MS.gene59347:intron | 45.0% | |
| AGAGCTAGGTAGATCACCTT+CGG | + | chr5.4:12049667-12049686 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | - | chr5.4:12048498-12048517 | MS.gene59347:CDS | 45.0% | |
| AGCCTTTCTCGATTCACTGA+AGG | - | chr5.4:12049450-12049469 | MS.gene59347:intron | 45.0% | |
| ATCTTCTGAGCAGTTGCTTG+TGG | + | chr5.4:12049913-12049932 | None:intergenic | 45.0% | |
| ATGATATCTCCTGGAGCAAC+AGG | + | chr5.4:12049802-12049821 | None:intergenic | 45.0% | |
| CAAGTTTGCCTCCATCAAAC+CGG | + | chr5.4:12050014-12050033 | None:intergenic | 45.0% | |
| CACGTACATGTTAGCCAAAG+TGG | + | chr5.4:12047777-12047796 | None:intergenic | 45.0% | |
| CACTTACTTGACTCTCGTGT+TGG | + | chr5.4:12048299-12048318 | None:intergenic | 45.0% | |
| CAGGAAACTTGGTATCTCAC+TGG | + | chr5.4:12048171-12048190 | None:intergenic | 45.0% | |
| CATGCTGGTGTGTACTTCAA+GGG | - | chr5.4:12047506-12047525 | MS.gene59347:CDS | 45.0% | |
| CCAGCAACAATGATATCTCC+TGG | + | chr5.4:12049811-12049830 | None:intergenic | 45.0% | |
| CCAGGAGATATCATTGTTGC+TGG | - | chr5.4:12049808-12049827 | MS.gene59347:CDS | 45.0% | |
| CCTCCAACTAGCATCAAAAG+TGG | + | chr5.4:12047618-12047637 | None:intergenic | 45.0% | |
| CGAGAGTCAAGTAAGTGTAG+CGG | - | chr5.4:12048302-12048321 | MS.gene59347:intron | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | + | chr5.4:12048475-12048494 | None:intergenic | 45.0% | |
| GACACCATTAGAGAGAGAGT+GGG | - | chr5.4:12048381-12048400 | MS.gene59347:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | - | chr5.4:12048508-12048527 | MS.gene59347:CDS | 45.0% | |
| GATGAGTGGTAAGACTAGAC+AGG | - | chr5.4:12048344-12048363 | MS.gene59347:intron | 45.0% | |
| GCAGTATGTAGTTGTAGTGG+TGG | - | chr5.4:12047962-12047981 | MS.gene59347:intron | 45.0% | |
| GCTTCATGCATACTGAACAC+TGG | - | chr5.4:12049114-12049133 | MS.gene59347:intron | 45.0% | |
| GGAATTGGCTACAAGTTCCT+GGG | + | chr5.4:12048885-12048904 | None:intergenic | 45.0% | |
| GGACCATACAAAACCTGTTG+CGG | + | chr5.4:12047578-12047597 | None:intergenic | 45.0% | |
| GGTGCAACTAGAGCTAGATT+AGG | - | chr5.4:12049886-12049905 | MS.gene59347:CDS | 45.0% | |
| GTACATGTTAGCCAAAGTGG+AGG | + | chr5.4:12047774-12047793 | None:intergenic | 45.0% | |
| GTGGTAAGACTAGACAGGAT+AGG | - | chr5.4:12048349-12048368 | MS.gene59347:intron | 45.0% | |
| TCGAATTGCTCTTGCGGAAT+TGG | + | chr5.4:12048900-12048919 | None:intergenic | 45.0% | |
| TGACACCATTAGAGAGAGAG+TGG | - | chr5.4:12048380-12048399 | MS.gene59347:intron | 45.0% | |
| TGCCTTCAGTGAATCGAGAA+AGG | + | chr5.4:12049455-12049474 | None:intergenic | 45.0% | |
| TGCTCAGAAGATAGCAGCAT+TGG | - | chr5.4:12049921-12049940 | MS.gene59347:CDS | 45.0% | |
| TGTGGTTGTTTACTTGGTCC+AGG | - | chr5.4:12049518-12049537 | MS.gene59347:intron | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | - | chr5.4:12048262-12048281 | MS.gene59347:intron | 45.0% | |
| TTCCTCTCGAATTGCTCTTG+CGG | + | chr5.4:12048906-12048925 | None:intergenic | 45.0% | |
| TTCTTACAACGGCATCTACG+GGG | + | chr5.4:12048474-12048493 | None:intergenic | 45.0% | |
| TTTACAGTACCTGTTGCTCC+AGG | - | chr5.4:12049790-12049809 | MS.gene59347:CDS | 45.0% | |
| ! | AAGTAAGTGTAGCGGAGATG+AGG | - | chr5.4:12048310-12048329 | MS.gene59347:intron | 45.0% |
| ! | CAGAATTCGGGTTTGCTTCA+TGG | - | chr5.4:12047641-12047660 | MS.gene59347:CDS | 45.0% |
| ! | GTTGTATGGTACGGAGTGTT+GGG | - | chr5.4:12048263-12048282 | MS.gene59347:intron | 45.0% |
| ! | TCACTCAAAAACAAAGGCGC+TGG | - | chr5.4:12048967-12048986 | MS.gene59347:intron | 45.0% |
| ! | TCTCCCAGAATAGCATTGGA+AGG | + | chr5.4:12047431-12047450 | None:intergenic | 45.0% |
| !! | AGACCGCAACAGGTTTTGTA+TGG | - | chr5.4:12047572-12047591 | MS.gene59347:CDS | 45.0% |
| !! | ATTGGTGTTGCAGATGGTGT+TGG | - | chr5.4:12048821-12048840 | MS.gene59347:intron | 45.0% |
| !! | CAAGCAATTGGTGTTGCAGA+TGG | - | chr5.4:12048815-12048834 | MS.gene59347:intron | 45.0% |
| !! | CACTCAAAAACAAAGGCGCT+GGG | - | chr5.4:12048968-12048987 | MS.gene59347:intron | 45.0% |
| !! | CCACTTTTGATGCTAGTTGG+AGG | - | chr5.4:12047615-12047634 | MS.gene59347:CDS | 45.0% |
| !! | GAGTATGGATACCGGTTTGA+TGG | - | chr5.4:12050000-12050019 | MS.gene59347:CDS | 45.0% |
| !! | GCAGATGTTGGTGTTAATGC+AGG | - | chr5.4:12048851-12048870 | MS.gene59347:intron | 45.0% |
| !! | TATGGATACCGGTTTGATGG+AGG | - | chr5.4:12050003-12050022 | MS.gene59347:CDS | 45.0% |
| !! | TCCAGTAAGGGTGTTAGAGA+AGG | - | chr5.4:12048943-12048962 | MS.gene59347:intron | 45.0% |
| AACTTTACCTCGCCAGAGCT+AGG | + | chr5.4:12049681-12049700 | None:intergenic | 50.0% | |
| AAGTAGCCGATCCCACTTAG+TGG | - | chr5.4:12048600-12048619 | MS.gene59347:CDS | 50.0% | |
| AAGTCCCCTGTTCAACAACG+CGG | - | chr5.4:12049606-12049625 | MS.gene59347:intron | 50.0% | |
| ACTAAGTGGGATCGGCTACT+TGG | + | chr5.4:12048601-12048620 | None:intergenic | 50.0% | |
| AGCGAGCTCTTGACACGAAA+AGG | - | chr5.4:12049950-12049969 | MS.gene59347:CDS | 50.0% | |
| AGTAGCCGATCCCACTTAGT+GGG | - | chr5.4:12048601-12048620 | MS.gene59347:CDS | 50.0% | |
| ATCCAGATAAGGTGGCGACT+GGG | - | chr5.4:12048759-12048778 | MS.gene59347:CDS | 50.0% | |
| CAAGCCTTACCCCACTAAGT+GGG | + | chr5.4:12048614-12048633 | None:intergenic | 50.0% | |
| CACCATTAGAGAGAGAGTGG+GGG | - | chr5.4:12048383-12048402 | MS.gene59347:intron | 50.0% | |
| CCACCTTATCTGGATGTGGT+AGG | + | chr5.4:12048754-12048773 | None:intergenic | 50.0% | |
| CCATATCAATTGGCGAGGAG+CGG | - | chr5.4:12049639-12049658 | MS.gene59347:intron | 50.0% | |
| CCTACCACATCCAGATAAGG+TGG | - | chr5.4:12048751-12048770 | MS.gene59347:CDS | 50.0% | |
| CGCTCCTCGCCAATTGATAT+GGG | + | chr5.4:12049641-12049660 | None:intergenic | 50.0% | |
| CGGAATTGGCTACAAGTTCC+TGG | + | chr5.4:12048886-12048905 | None:intergenic | 50.0% | |
| CTGCTCTCGAGTATGGATAC+CGG | - | chr5.4:12049992-12050011 | MS.gene59347:CDS | 50.0% | |
| CTTACCCCACTAAGTGGGAT+CGG | + | chr5.4:12048609-12048628 | None:intergenic | 50.0% | |
| GAAGGTGATCTACCTAGCTC+TGG | - | chr5.4:12049666-12049685 | MS.gene59347:intron | 50.0% | |
| GAGTTTGAGAAGACCGCAAC+AGG | - | chr5.4:12047562-12047581 | MS.gene59347:CDS | 50.0% | |
| GATTCACTGAAGGCAGCACA+AGG | - | chr5.4:12049426-12049445 | MS.gene59347:intron | 50.0% | |
| GCAATTCGAGAGGAACCCAA+AGG | - | chr5.4:12048911-12048930 | MS.gene59347:intron | 50.0% | |
| GCATGCTGGTGTGTACTTCA+AGG | - | chr5.4:12047505-12047524 | MS.gene59347:CDS | 50.0% | |
| GCCTTCTCTAACACCCTTAC+TGG | + | chr5.4:12048947-12048966 | None:intergenic | 50.0% | |
| GTGGAACGCCCGAAATTCAA+AGG | + | chr5.4:12047599-12047618 | None:intergenic | 50.0% | |
| TAATGCAGGACTGTATGCCC+AGG | - | chr5.4:12048865-12048884 | MS.gene59347:intron | 50.0% | |
| TACCCCCACTCTCTCTCTAA+TGG | + | chr5.4:12048388-12048407 | None:intergenic | 50.0% | |
| TCGAGAGCAGCAGCTGAAAA+TGG | + | chr5.4:12049982-12050001 | None:intergenic | 50.0% | |
| TGAACCCGCGTTGTTGAACA+GGG | + | chr5.4:12049614-12049633 | None:intergenic | 50.0% | |
| TTCCGCAAGAGCAATTCGAG+AGG | - | chr5.4:12048901-12048920 | MS.gene59347:intron | 50.0% | |
| TTGAACCCGCGTTGTTGAAC+AGG | + | chr5.4:12049615-12049634 | None:intergenic | 50.0% | |
| ! | TATTCTGCTTGCTGCTTGGC+TGG | - | chr5.4:12047692-12047711 | MS.gene59347:CDS | 50.0% |
| AGGATGTTGCGCTGGATGAG+TGG | - | chr5.4:12048330-12048349 | MS.gene59347:intron | 55.0% | |
| AGTCCCCTGTTCAACAACGC+GGG | - | chr5.4:12049607-12049626 | MS.gene59347:intron | 55.0% | |
| CAGCCCTCCTGATGAACAAC+TGG | - | chr5.4:12047742-12047761 | MS.gene59347:intron | 55.0% | |
| CAGTTGTTCATCAGGAGGGC+TGG | + | chr5.4:12047744-12047763 | None:intergenic | 55.0% | |
| CATCCAGATAAGGTGGCGAC+TGG | - | chr5.4:12048758-12048777 | MS.gene59347:CDS | 55.0% | |
| CCAAGCCTTACCCCACTAAG+TGG | + | chr5.4:12048615-12048634 | None:intergenic | 55.0% | |
| CCACTTAGTGGGGTAAGGCT+TGG | - | chr5.4:12048612-12048631 | MS.gene59347:CDS | 55.0% | |
| CCGCTCCTCGCCAATTGATA+TGG | + | chr5.4:12049642-12049661 | None:intergenic | 55.0% | |
| CGATCCCACTTAGTGGGGTA+AGG | - | chr5.4:12048607-12048626 | MS.gene59347:CDS | 55.0% | |
| GAACCCGCGTTGTTGAACAG+GGG | + | chr5.4:12049613-12049632 | None:intergenic | 55.0% | |
| GCACTATGCGGCTACAGTTG+CGG | - | chr5.4:12048044-12048063 | MS.gene59347:intron | 55.0% | |
| GTAGCCGATCCCACTTAGTG+GGG | - | chr5.4:12048602-12048621 | MS.gene59347:CDS | 55.0% | |
| GTCGCCACCTTATCTGGATG+TGG | + | chr5.4:12048758-12048777 | None:intergenic | 55.0% | |
| TCAGCTGCTGCTCTCGAGTA+TGG | - | chr5.4:12049985-12050004 | MS.gene59347:CDS | 55.0% | |
| TCCAGATAAGGTGGCGACTG+GGG | - | chr5.4:12048760-12048779 | MS.gene59347:CDS | 55.0% | |
| ! | GGTGTTGCAGATGGTGTTGG+TGG | - | chr5.4:12048824-12048843 | MS.gene59347:intron | 55.0% |
| !! | GTATGGTACGGAGTGTTGGG+CGG | - | chr5.4:12048266-12048285 | MS.gene59347:intron | 55.0% |
| !! | TGATCTACCTAGCTCTGGCG+AGG | - | chr5.4:12049671-12049690 | MS.gene59347:intron | 55.0% |
| !! | TGCAGATGGTGTTGGTGGCT+GGG | - | chr5.4:12048829-12048848 | MS.gene59347:intron | 55.0% |
| !! | TTGCAGATGGTGTTGGTGGC+TGG | - | chr5.4:12048828-12048847 | MS.gene59347:intron | 55.0% |
| CCAGATAAGGTGGCGACTGG+GGG | - | chr5.4:12048761-12048780 | MS.gene59347:CDS | 60.0% | |
| CGGAGATGAGGATGTTGCGC+TGG | - | chr5.4:12048322-12048341 | MS.gene59347:intron | 60.0% | |
| CTACAGTTGCGGCCGTGATG+TGG | - | chr5.4:12048055-12048074 | MS.gene59347:intron | 60.0% | |
| GGAGCCCTGCAACCACATCA+CGG | + | chr5.4:12048070-12048089 | None:intergenic | 60.0% | |
| ! | CGGGTTTGCTTCATGGACCG+TGG | - | chr5.4:12047648-12047667 | MS.gene59347:CDS | 60.0% |
| !! | GTTGGTGGCTGGGCAGATGT+TGG | - | chr5.4:12048839-12048858 | MS.gene59347:intron | 60.0% |
| CCCCCAGTCGCCACCTTATC+TGG | + | chr5.4:12048764-12048783 | None:intergenic | 65.0% | |
| GCGGCCGTGATGTGGTTGCA+GGG | - | chr5.4:12048063-12048082 | MS.gene59347:intron | 65.0% | |
| TAAGGTGGCGACTGGGGGAG+AGG | - | chr5.4:12048766-12048785 | MS.gene59347:CDS | 65.0% | |
| TGCGGCCGTGATGTGGTTGC+AGG | - | chr5.4:12048062-12048081 | MS.gene59347:intron | 65.0% | |
| ! | TTGGCGAGGAGCGGTACCGA+AGG | - | chr5.4:12049648-12049667 | MS.gene59347:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12047416 | 12050083 | 12047416 | ID=MS.gene59347 |
| chr5.4 | mRNA | 12047416 | 12050083 | 12047416 | ID=MS.gene59347.t1;Parent=MS.gene59347 |
| chr5.4 | exon | 12049710 | 12050083 | 12049710 | ID=MS.gene59347.t1.exon1;Parent=MS.gene59347.t1 |
| chr5.4 | CDS | 12049710 | 12050083 | 12049710 | ID=cds.MS.gene59347.t1;Parent=MS.gene59347.t1 |
| chr5.4 | exon | 12048472 | 12048796 | 12048472 | ID=MS.gene59347.t1.exon2;Parent=MS.gene59347.t1 |
| chr5.4 | CDS | 12048472 | 12048796 | 12048472 | ID=cds.MS.gene59347.t1;Parent=MS.gene59347.t1 |
| chr5.4 | exon | 12047807 | 12047959 | 12047807 | ID=MS.gene59347.t1.exon3;Parent=MS.gene59347.t1 |
| chr5.4 | CDS | 12047807 | 12047959 | 12047807 | ID=cds.MS.gene59347.t1;Parent=MS.gene59347.t1 |
| chr5.4 | exon | 12047416 | 12047712 | 12047416 | ID=MS.gene59347.t1.exon4;Parent=MS.gene59347.t1 |
| chr5.4 | CDS | 12047416 | 12047712 | 12047416 | ID=cds.MS.gene59347.t1;Parent=MS.gene59347.t1 |
| Gene Sequence |
| Protein sequence |
