Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69351.t1 | XP_024634993.1 | 95.5 | 331 | 14 | 1 | 1 | 331 | 1 | 330 | 7.00E-180 | 639.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69351.t1 | Q9SGS2 | 61.4 | 308 | 111 | 4 | 18 | 322 | 25 | 327 | 4.2e-101 | 369.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69351.t1 | A0A072V3N9 | 94.9 | 331 | 13 | 1 | 1 | 331 | 1 | 327 | 9.5e-179 | 635.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69351.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene69351 | 0.834863 | 2.34E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene69351 | 0.854707 | 1.03E-61 | -1.69E-46 |
| MS.gene049232 | MS.gene69351 | 0.842137 | 3.11E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene69351 | 0.829908 | 3.95E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene69351 | 0.838342 | 3.05E-57 | -1.69E-46 |
| MS.gene05010 | MS.gene69351 | 0.824737 | 6.86E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene69351 | 0.826305 | 2.92E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene69351 | 0.831517 | 1.60E-55 | -1.69E-46 |
| MS.gene050216 | MS.gene69351 | 0.821929 | 3.11E-53 | -1.69E-46 |
| MS.gene050323 | MS.gene69351 | 0.810284 | 1.24E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene69351 | 0.812678 | 3.76E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene69351 | 0.843741 | 1.16E-58 | -1.69E-46 |
| MS.gene050518 | MS.gene69351 | 0.806091 | 9.73E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene69351 | 0.812991 | 3.21E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene69351 | 0.815669 | 8.21E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene69351 | 0.814161 | 1.77E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene69351 | 0.822724 | 2.03E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene69351 | 0.817248 | 3.64E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene69351 | 0.808293 | 3.33E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene69351 | 0.808086 | 3.68E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene69351 | 0.812089 | 5.05E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene69351 | 0.803332 | 3.67E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene69351 | 0.802183 | 6.33E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene69351 | 0.825214 | 5.30E-54 | -1.69E-46 |
| MS.gene052164 | MS.gene69351 | 0.81796 | 2.52E-52 | -1.69E-46 |
| MS.gene052486 | MS.gene69351 | 0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene69351 | 0.806973 | 6.34E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene69351 | 0.803461 | 3.45E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene69351 | 0.804142 | 2.49E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene69351 | 0.816621 | 5.03E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene69351 | 0.829873 | 4.04E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene69351 | 0.823274 | 1.51E-53 | -1.69E-46 |
| MS.gene053421 | MS.gene69351 | -0.811592 | 6.48E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene69351 | 0.814333 | 1.63E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene69351 | 0.810065 | 1.39E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene69351 | 0.826266 | 2.98E-54 | -1.69E-46 |
| MS.gene054003 | MS.gene69351 | 0.809466 | 1.87E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene69351 | 0.803298 | 3.73E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene69351 | 0.830175 | 3.41E-55 | -1.69E-46 |
| MS.gene054954 | MS.gene69351 | 0.829126 | 6.13E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene69351 | 0.840275 | 9.59E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene69351 | 0.839563 | 1.47E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene69351 | 0.825228 | 5.26E-54 | -1.69E-46 |
| MS.gene056046 | MS.gene69351 | 0.816864 | 4.44E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene69351 | 0.841131 | 5.72E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene69351 | 0.810964 | 8.87E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene69351 | 0.844989 | 5.37E-59 | -1.69E-46 |
| MS.gene058157 | MS.gene69351 | 0.808217 | 3.45E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene69351 | 0.803352 | 3.63E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene69351 | 0.833646 | 4.73E-56 | -1.69E-46 |
| MS.gene058544 | MS.gene69351 | 0.806177 | 9.34E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene69351 | 0.819327 | 1.23E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene69351 | 0.841197 | 5.50E-58 | -1.69E-46 |
| MS.gene05934 | MS.gene69351 | 0.804422 | 2.18E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene69351 | 0.83416 | 3.52E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene69351 | 0.824001 | 1.02E-53 | -1.69E-46 |
| MS.gene059801 | MS.gene69351 | 0.810013 | 1.42E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene69351 | 0.814991 | 1.16E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene69351 | 0.830454 | 2.91E-55 | -1.69E-46 |
| MS.gene060703 | MS.gene69351 | 0.813366 | 2.66E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene69351 | 0.807879 | 4.07E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene69351 | 0.82136 | 4.21E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene69351 | 0.830875 | 2.30E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69351.t1 | MTR_3g114920 | 94.864 | 331 | 13 | 1 | 1 | 331 | 1 | 327 | 0.0 | 630 |
| MS.gene69351.t1 | MTR_1g116180 | 45.566 | 327 | 138 | 8 | 20 | 321 | 24 | 335 | 3.73e-89 | 273 |
| MS.gene69351.t1 | MTR_7g005970 | 45.312 | 320 | 157 | 9 | 20 | 329 | 25 | 336 | 1.26e-82 | 257 |
| MS.gene69351.t1 | MTR_1g116180 | 45.545 | 303 | 125 | 8 | 20 | 297 | 24 | 311 | 4.76e-80 | 247 |
| MS.gene69351.t1 | MTR_3g009890 | 37.829 | 304 | 115 | 7 | 20 | 317 | 29 | 264 | 2.43e-50 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69351.t1 | AT1G76110 | 63.636 | 308 | 104 | 5 | 18 | 322 | 25 | 327 | 1.20e-131 | 379 |
| MS.gene69351.t1 | AT1G04880 | 41.486 | 323 | 156 | 6 | 23 | 321 | 21 | 334 | 1.01e-78 | 247 |
| MS.gene69351.t1 | AT3G13350 | 40.476 | 294 | 152 | 4 | 25 | 317 | 34 | 305 | 7.80e-65 | 207 |
| MS.gene69351.t1 | AT1G55650 | 36.213 | 301 | 142 | 8 | 27 | 321 | 30 | 286 | 1.71e-53 | 179 |
Find 78 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGACTGACCAATCATTT+TGG | 0.213880 | 3.3:+93767797 | None:intergenic |
| TGAAGTTAGTTACATGAATT+TGG | 0.218590 | 3.3:+93769205 | None:intergenic |
| GCACTATAATTTACCATCTT+AGG | 0.243959 | 3.3:+93768639 | None:intergenic |
| AGACGATGATTCATGTCTTT+TGG | 0.244218 | 3.3:-93768126 | MS.gene69351:CDS |
| TTAACGACCCTACTCTCTTT+TGG | 0.246597 | 3.3:-93769262 | MS.gene69351:CDS |
| TTATATAGTGTCAGTGAAAT+TGG | 0.257424 | 3.3:-93768069 | MS.gene69351:CDS |
| GTAAACTCCCTTTCTCTGTT+TGG | 0.269610 | 3.3:+93767819 | None:intergenic |
| AAGTTATAGCCACTCCTATT+TGG | 0.286925 | 3.3:+93767882 | None:intergenic |
| TTCAGAGCTGAGACTATTCC+AGG | 0.293074 | 3.3:+93767779 | None:intergenic |
| AGTTCACTTCTTCAAAGTTC+AGG | 0.296129 | 3.3:-93768844 | MS.gene69351:CDS |
| TAAACTCCCTTTCTCTGTTT+GGG | 0.301975 | 3.3:+93767820 | None:intergenic |
| CCAACTATCCAAAGCCAAAT+AGG | 0.317522 | 3.3:-93767896 | MS.gene69351:CDS |
| TATTGAACAATAGCTAATTC+AGG | 0.323525 | 3.3:+93768666 | None:intergenic |
| CTATTTGGCTTTGGATAGTT+GGG | 0.336021 | 3.3:+93767897 | None:intergenic |
| CCTATTTGGCTTTGGATAGT+TGG | 0.350904 | 3.3:+93767896 | None:intergenic |
| TTACCAAAACATTGGCTTAA+GGG | 0.366684 | 3.3:-93767594 | MS.gene69351:CDS |
| TTTACCAAAACATTGGCTTA+AGG | 0.369159 | 3.3:-93767595 | MS.gene69351:CDS |
| TAGCCACTCCTATTTGGCTT+TGG | 0.371071 | 3.3:+93767888 | None:intergenic |
| TTGGGAAAAGGAACAATAGA+AGG | 0.380812 | 3.3:-93768107 | MS.gene69351:CDS |
| AGCGGTTTCTCCTTCATCAT+TGG | 0.385924 | 3.3:-93768006 | MS.gene69351:CDS |
| AGGTTGTTGCAGAGAAGAAA+TGG | 0.399101 | 3.3:-93768965 | MS.gene69351:CDS |
| TCCTACCCAAGCGATGAGTT+TGG | 0.411390 | 3.3:+93767946 | None:intergenic |
| GAGAAGAAATGGAGAGAAGT+AGG | 0.422027 | 3.3:-93768954 | MS.gene69351:CDS |
| TGTCCCTTAAGCCAATGTTT+TGG | 0.427681 | 3.3:+93767591 | None:intergenic |
| TGTTCAATATTCACCTAAGA+TGG | 0.427917 | 3.3:-93768652 | MS.gene69351:CDS |
| AGGGAGTTTACCAAAATGAT+TGG | 0.428453 | 3.3:-93767807 | MS.gene69351:CDS |
| AACTCTACCCAAACAGAGAA+AGG | 0.437948 | 3.3:-93767827 | MS.gene69351:CDS |
| TATATAGTGTCAGTGAAATT+GGG | 0.442454 | 3.3:-93768068 | MS.gene69351:CDS |
| CCAAAATGATTGGTCAGTCC+TGG | 0.444792 | 3.3:-93767797 | MS.gene69351:CDS |
| TTGCATAGGATTCCTGTGAT+TGG | 0.455163 | 3.3:-93769123 | MS.gene69351:intron |
| GTTCACTTCTTCAAAGTTCA+GGG | 0.455272 | 3.3:-93768843 | MS.gene69351:CDS |
| CAATCACCAAACTCATCGCT+TGG | 0.458935 | 3.3:-93767952 | MS.gene69351:CDS |
| TGGGTTCAGAAGTTCTCAAA+GGG | 0.460026 | 3.3:-93768049 | MS.gene69351:CDS |
| TCGTCGCTTTCACTTTCTCA+TGG | 0.469995 | 3.3:-93769231 | MS.gene69351:CDS |
| TTTGCCTTCGTCGTCGTCGC+CGG | 0.479624 | 3.3:+93769322 | None:intergenic |
| TTGTGAGAGGCGAGTGGGTG+AGG | 0.488368 | 3.3:+93769293 | None:intergenic |
| TCTCAGCTCTGAAGAAAGAA+TGG | 0.490573 | 3.3:-93767769 | MS.gene69351:intron |
| AAGGTACAAAAGAGAGTTGA+CGG | 0.495764 | 3.3:-93767564 | MS.gene69351:CDS |
| CGATGAGTTTGGTGATTGAA+TGG | 0.504304 | 3.3:+93767957 | None:intergenic |
| GATTCCTGTGATTGGTGGTA+AGG | 0.506284 | 3.3:-93769115 | MS.gene69351:CDS |
| TTGCAGATTTACCAAAACAT+TGG | 0.511934 | 3.3:-93767602 | MS.gene69351:intron |
| ATAGAAGGAAAATTTGATTG+TGG | 0.518312 | 3.3:-93768092 | MS.gene69351:CDS |
| AAACTCATCGCTTGGGTAGG+AGG | 0.523054 | 3.3:-93767944 | MS.gene69351:CDS |
| TTCTCTACGTGGAAGTTACA+AGG | 0.523185 | 3.3:-93769077 | MS.gene69351:CDS |
| TTGGCTTAAGGGACAAAGAA+AGG | 0.525876 | 3.3:-93767583 | MS.gene69351:CDS |
| AGAGTGTCCCAAAAGAGAGT+AGG | 0.527303 | 3.3:+93769254 | None:intergenic |
| GAGTGTCCCAAAAGAGAGTA+GGG | 0.533581 | 3.3:+93769255 | None:intergenic |
| AATCACCAAACTCATCGCTT+GGG | 0.544065 | 3.3:-93767951 | MS.gene69351:CDS |
| CATAGGATTCCTGTGATTGG+TGG | 0.550359 | 3.3:-93769120 | MS.gene69351:intron |
| AGTGCTGAATCTCATGATGA+AGG | 0.550456 | 3.3:-93768621 | MS.gene69351:intron |
| CGAAATAGTAATACCTGGTG+AGG | 0.553336 | 3.3:+93768806 | None:intergenic |
| TTGGTGATTGAATGGCTCAA+TGG | 0.554617 | 3.3:+93767965 | None:intergenic |
| AAAAGAAGCGCTTGTAGTGG+TGG | 0.559395 | 3.3:+93768911 | None:intergenic |
| GAAATAGTAATACCTGGTGA+GGG | 0.568622 | 3.3:+93768807 | None:intergenic |
| ACTCTACCCAAACAGAGAAA+GGG | 0.569820 | 3.3:-93767826 | MS.gene69351:CDS |
| TTGGGTTCAGAAGTTCTCAA+AGG | 0.586901 | 3.3:-93768050 | MS.gene69351:CDS |
| GGAGTACAAACAGAAAATGA+AGG | 0.592924 | 3.3:-93767543 | MS.gene69351:CDS |
| GCTAATTCAGGTTTCCACGA+TGG | 0.602804 | 3.3:+93768678 | None:intergenic |
| AAGGAGAAGCGGTTATGAGA+AGG | 0.604277 | 3.3:-93769058 | MS.gene69351:intron |
| AGCTCCTTACCACCAATCAC+AGG | 0.612482 | 3.3:+93769111 | None:intergenic |
| GTTAACGACGTCGTTGTGAG+AGG | 0.614603 | 3.3:+93769280 | None:intergenic |
| ACGTCGTTGTGAGAGGCGAG+TGG | 0.618608 | 3.3:+93769287 | None:intergenic |
| TTGTGCAGACAGAAGAACTC+GGG | 0.623939 | 3.3:-93767520 | MS.gene69351:CDS |
| TACAAAAGAAGCGCTTGTAG+TGG | 0.625201 | 3.3:+93768908 | None:intergenic |
| TGTTGTGTAACCAATGATGA+AGG | 0.625666 | 3.3:+93767996 | None:intergenic |
| CGTCGTTGTGAGAGGCGAGT+GGG | 0.633264 | 3.3:+93769288 | None:intergenic |
| AACTCCGGCGACGACGACGA+AGG | 0.636321 | 3.3:-93769326 | MS.gene69351:CDS |
| TATCCAAAGCCAAATAGGAG+TGG | 0.645627 | 3.3:-93767891 | MS.gene69351:CDS |
| TGATTTGCACGTTCTCTACG+TGG | 0.652993 | 3.3:-93769088 | MS.gene69351:CDS |
| AAATAGTAATACCTGGTGAG+GGG | 0.654247 | 3.3:+93768808 | None:intergenic |
| GCGGTGAGAAGCAAGAACTC+CGG | 0.655187 | 3.3:-93769341 | MS.gene69351:CDS |
| ACCAAACTCATCGCTTGGGT+AGG | 0.660160 | 3.3:-93767947 | MS.gene69351:CDS |
| GTGGAAGTTACAAGGAGAAG+CGG | 0.661449 | 3.3:-93769069 | MS.gene69351:CDS |
| AATAGTAATACCTGGTGAGG+GGG | 0.665808 | 3.3:+93768809 | None:intergenic |
| GTTGTGCAGACAGAAGAACT+CGG | 0.678933 | 3.3:-93767521 | MS.gene69351:CDS |
| TTTCTGGTAACAGTCCATCG+TGG | 0.712333 | 3.3:-93768692 | MS.gene69351:CDS |
| GGGTTCAGAAGTTCTCAAAG+GGG | 0.716935 | 3.3:-93768048 | MS.gene69351:CDS |
| TCATTGGTTACACAACACAA+CGG | 0.736779 | 3.3:-93767990 | MS.gene69351:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATAATTCAAATTTC+AGG | - | chr3.3:93767879-93767898 | MS.gene69351:CDS | 10.0% |
| !! | AAATGAAATCACATTTATAA+TGG | + | chr3.3:93767722-93767741 | None:intergenic | 15.0% |
| !! | ACAAAAAATAGTATAAAAGA+AGG | + | chr3.3:93767843-93767862 | None:intergenic | 15.0% |
| !! | CAAAAAATAGTATAAAAGAA+GGG | + | chr3.3:93767842-93767861 | None:intergenic | 15.0% |
| !! | AAGAAAGAATGGTAATTAAA+AGG | - | chr3.3:93769106-93769125 | MS.gene69351:CDS | 20.0% |
| !! | AGAAAGAATGGTAATTAAAA+GGG | - | chr3.3:93769107-93769126 | MS.gene69351:CDS | 20.0% |
| !! | AGATATTGAAATTACAGAAT+TGG | - | chr3.3:93768328-93768347 | MS.gene69351:intron | 20.0% |
| !! | TAATGGTTATTTATCAAGTT+AGG | - | chr3.3:93768271-93768290 | MS.gene69351:intron | 20.0% |
| ! | ATAGAAGGAAAATTTGATTG+TGG | - | chr3.3:93768772-93768791 | MS.gene69351:intron | 25.0% |
| ! | GAAAGTAGTTTATGATGTTA+AGG | - | chr3.3:93768522-93768541 | MS.gene69351:intron | 25.0% |
| ! | TATATAGTGTCAGTGAAATT+GGG | - | chr3.3:93768796-93768815 | MS.gene69351:intron | 25.0% |
| ! | TATTGAACAATAGCTAATTC+AGG | + | chr3.3:93768201-93768220 | None:intergenic | 25.0% |
| ! | TCATGATGAAGGTAATTTAA+TGG | - | chr3.3:93768254-93768273 | MS.gene69351:intron | 25.0% |
| ! | TGAAGTTAGTTACATGAATT+TGG | + | chr3.3:93767662-93767681 | None:intergenic | 25.0% |
| ! | TTATATAGTGTCAGTGAAAT+TGG | - | chr3.3:93768795-93768814 | MS.gene69351:intron | 25.0% |
| ! | TTGGTAAATCTGCAATATTA+GGG | + | chr3.3:93769257-93769276 | None:intergenic | 25.0% |
| ! | TTTGGTAAATCTGCAATATT+AGG | + | chr3.3:93769258-93769277 | None:intergenic | 25.0% |
| !! | AATGTGATTTCATTTTGCAT+AGG | - | chr3.3:93767727-93767746 | MS.gene69351:intron | 25.0% |
| !! | CACATTTATAATGGTACTTT+TGG | + | chr3.3:93767713-93767732 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTATCTAGAATC+TGG | - | chr3.3:93769173-93769192 | MS.gene69351:intron | 25.0% |
| !!! | TCTGCATATTTAATTTGTCA+TGG | - | chr3.3:93768665-93768684 | MS.gene69351:CDS | 25.0% |
| !!! | TTATAATGGTACTTTTGGTT+TGG | + | chr3.3:93767708-93767727 | None:intergenic | 25.0% |
| AATAGCGAAATAGTAATACC+TGG | + | chr3.3:93768066-93768085 | None:intergenic | 30.0% | |
| ACTCATTTGTGATTCTACTA+AGG | - | chr3.3:93768452-93768471 | MS.gene69351:intron | 30.0% | |
| CAACAATGTAAAGACCAATT+AGG | + | chr3.3:93769160-93769179 | None:intergenic | 30.0% | |
| GAAATTACAGAATTGGAATC+AGG | - | chr3.3:93768335-93768354 | MS.gene69351:intron | 30.0% | |
| GAAGAGAAGAAAAAGAAAGT+GGG | - | chr3.3:93768942-93768961 | MS.gene69351:CDS | 30.0% | |
| GCACTATAATTTACCATCTT+AGG | + | chr3.3:93768228-93768247 | None:intergenic | 30.0% | |
| TGTTCAATATTCACCTAAGA+TGG | - | chr3.3:93768212-93768231 | MS.gene69351:intron | 30.0% | |
| TTGCAGATTTACCAAAACAT+TGG | - | chr3.3:93769262-93769281 | MS.gene69351:CDS | 30.0% | |
| ! | TATATTGCAGATGCATTTTC+TGG | - | chr3.3:93768156-93768175 | MS.gene69351:intron | 30.0% |
| ! | TATCTAGAATCTGGTTATCA+GGG | - | chr3.3:93769182-93769201 | MS.gene69351:intron | 30.0% |
| ! | TTATCTAGAATCTGGTTATC+AGG | - | chr3.3:93769181-93769200 | MS.gene69351:intron | 30.0% |
| !! | TTACCAAAACATTGGCTTAA+GGG | - | chr3.3:93769270-93769289 | MS.gene69351:CDS | 30.0% |
| !! | TTTACCAAAACATTGGCTTA+AGG | - | chr3.3:93769269-93769288 | MS.gene69351:CDS | 30.0% |
| !!! | GTGTGTTGTTTTATCCTAAT+TGG | - | chr3.3:93769143-93769162 | MS.gene69351:intron | 30.0% |
| AAATAGTAATACCTGGTGAG+GGG | + | chr3.3:93768059-93768078 | None:intergenic | 35.0% | |
| AAGGTACAAAAGAGAGTTGA+CGG | - | chr3.3:93769300-93769319 | MS.gene69351:CDS | 35.0% | |
| AAGTTATAGCCACTCCTATT+TGG | + | chr3.3:93768985-93769004 | None:intergenic | 35.0% | |
| AGGGAGTTTACCAAAATGAT+TGG | - | chr3.3:93769057-93769076 | MS.gene69351:intron | 35.0% | |
| AGTTCACTTCTTCAAAGTTC+AGG | - | chr3.3:93768020-93768039 | MS.gene69351:CDS | 35.0% | |
| GAAATAGTAATACCTGGTGA+GGG | + | chr3.3:93768060-93768079 | None:intergenic | 35.0% | |
| GGAAGAGAAGAAAAAGAAAG+TGG | - | chr3.3:93768941-93768960 | MS.gene69351:CDS | 35.0% | |
| GGAGTACAAACAGAAAATGA+AGG | - | chr3.3:93769321-93769340 | MS.gene69351:CDS | 35.0% | |
| GTTCACTTCTTCAAAGTTCA+GGG | - | chr3.3:93768021-93768040 | MS.gene69351:CDS | 35.0% | |
| TAAACTCCCTTTCTCTGTTT+GGG | + | chr3.3:93769047-93769066 | None:intergenic | 35.0% | |
| TGCTGCTAAGAATTGAAAGT+TGG | - | chr3.3:93768491-93768510 | MS.gene69351:intron | 35.0% | |
| TGTTGTGTAACCAATGATGA+AGG | + | chr3.3:93768871-93768890 | None:intergenic | 35.0% | |
| TTGGGAAAAGGAACAATAGA+AGG | - | chr3.3:93768757-93768776 | MS.gene69351:intron | 35.0% | |
| ! | AGACGATGATTCATGTCTTT+TGG | - | chr3.3:93768738-93768757 | MS.gene69351:intron | 35.0% |
| ! | GACGATGATTCATGTCTTTT+GGG | - | chr3.3:93768739-93768758 | MS.gene69351:intron | 35.0% |
| ! | TAGAAGTAGAAGCATGATTG+TGG | - | chr3.3:93768582-93768601 | MS.gene69351:intron | 35.0% |
| ! | TCATTGGTTACACAACACAA+CGG | - | chr3.3:93768874-93768893 | MS.gene69351:CDS | 35.0% |
| !! | CTATTTGGCTTTGGATAGTT+GGG | + | chr3.3:93768970-93768989 | None:intergenic | 35.0% |
| !! | GATTCATGTCTTTTGGGAAA+AGG | - | chr3.3:93768745-93768764 | MS.gene69351:intron | 35.0% |
| AACTCTACCCAAACAGAGAA+AGG | - | chr3.3:93769037-93769056 | MS.gene69351:intron | 40.0% | |
| AATAGTAATACCTGGTGAGG+GGG | + | chr3.3:93768058-93768077 | None:intergenic | 40.0% | |
| AATCACCAAACTCATCGCTT+GGG | - | chr3.3:93768913-93768932 | MS.gene69351:CDS | 40.0% | |
| ACTCTACCCAAACAGAGAAA+GGG | - | chr3.3:93769038-93769057 | MS.gene69351:intron | 40.0% | |
| AGGTTGTTGCAGAGAAGAAA+TGG | - | chr3.3:93767899-93767918 | MS.gene69351:CDS | 40.0% | |
| CCAACTATCCAAAGCCAAAT+AGG | - | chr3.3:93768968-93768987 | MS.gene69351:intron | 40.0% | |
| CGAAATAGTAATACCTGGTG+AGG | + | chr3.3:93768061-93768080 | None:intergenic | 40.0% | |
| GAGAAGAAATGGAGAGAAGT+AGG | - | chr3.3:93767910-93767929 | MS.gene69351:CDS | 40.0% | |
| GCTTTACCATCCAGAAAAAG+CGG | - | chr3.3:93768840-93768859 | MS.gene69351:CDS | 40.0% | |
| GTAAACTCCCTTTCTCTGTT+TGG | + | chr3.3:93769048-93769067 | None:intergenic | 40.0% | |
| TATCCAAAGCCAAATAGGAG+TGG | - | chr3.3:93768973-93768992 | MS.gene69351:intron | 40.0% | |
| TGGGTTCAGAAGTTCTCAAA+GGG | - | chr3.3:93768815-93768834 | MS.gene69351:intron | 40.0% | |
| TTCTCTACGTGGAAGTTACA+AGG | - | chr3.3:93767787-93767806 | MS.gene69351:CDS | 40.0% | |
| TTGCATAGGATTCCTGTGAT+TGG | - | chr3.3:93767741-93767760 | MS.gene69351:intron | 40.0% | |
| TTGGCTTAAGGGACAAAGAA+AGG | - | chr3.3:93769281-93769300 | MS.gene69351:CDS | 40.0% | |
| TTGGGTTCAGAAGTTCTCAA+AGG | - | chr3.3:93768814-93768833 | MS.gene69351:intron | 40.0% | |
| ! | AGTGCTGAATCTCATGATGA+AGG | - | chr3.3:93768243-93768262 | MS.gene69351:intron | 40.0% |
| ! | ATGATTGTGGACTCAAGTTG+AGG | - | chr3.3:93768595-93768614 | MS.gene69351:intron | 40.0% |
| ! | CGATGAGTTTGGTGATTGAA+TGG | + | chr3.3:93768910-93768929 | None:intergenic | 40.0% |
| ! | TAACGACCCTACTCTCTTTT+GGG | - | chr3.3:93767603-93767622 | MS.gene69351:intron | 40.0% |
| ! | TGTCCCTTAAGCCAATGTTT+TGG | + | chr3.3:93769276-93769295 | None:intergenic | 40.0% |
| ! | TTAACGACCCTACTCTCTTT+TGG | - | chr3.3:93767602-93767621 | MS.gene69351:intron | 40.0% |
| ! | TTGGTGATTGAATGGCTCAA+TGG | + | chr3.3:93768902-93768921 | None:intergenic | 40.0% |
| !! | CCTATTTGGCTTTGGATAGT+TGG | + | chr3.3:93768971-93768990 | None:intergenic | 40.0% |
| !! | TACAAAAGAAGCGCTTGTAG+TGG | + | chr3.3:93767959-93767978 | None:intergenic | 40.0% |
| !! | TCTCAGCTCTGAAGAAAGAA+TGG | - | chr3.3:93769095-93769114 | MS.gene69351:CDS | 40.0% |
| !! | TGGACTCAAGTTGAGGATTT+AGG | - | chr3.3:93768602-93768621 | MS.gene69351:intron | 40.0% |
| AAGGAGAAGCGGTTATGAGA+AGG | - | chr3.3:93767806-93767825 | MS.gene69351:CDS | 45.0% | |
| AGCGGTTTCTCCTTCATCAT+TGG | - | chr3.3:93768858-93768877 | MS.gene69351:CDS | 45.0% | |
| CAATCACCAAACTCATCGCT+TGG | - | chr3.3:93768912-93768931 | MS.gene69351:CDS | 45.0% | |
| CATAGGATTCCTGTGATTGG+TGG | - | chr3.3:93767744-93767763 | MS.gene69351:intron | 45.0% | |
| GAGTGTCCCAAAAGAGAGTA+GGG | + | chr3.3:93767612-93767631 | None:intergenic | 45.0% | |
| GGGTTCAGAAGTTCTCAAAG+GGG | - | chr3.3:93768816-93768835 | MS.gene69351:intron | 45.0% | |
| GTGGAAGTTACAAGGAGAAG+CGG | - | chr3.3:93767795-93767814 | MS.gene69351:CDS | 45.0% | |
| GTTGTGCAGACAGAAGAACT+CGG | - | chr3.3:93769343-93769362 | MS.gene69351:CDS | 45.0% | |
| TTCAGAGCTGAGACTATTCC+AGG | + | chr3.3:93769088-93769107 | None:intergenic | 45.0% | |
| TTGTGCAGACAGAAGAACTC+GGG | - | chr3.3:93769344-93769363 | MS.gene69351:CDS | 45.0% | |
| ! | AGAGTGTCCCAAAAGAGAGT+AGG | + | chr3.3:93767613-93767632 | None:intergenic | 45.0% |
| ! | CCAAAATGATTGGTCAGTCC+TGG | - | chr3.3:93769067-93769086 | MS.gene69351:CDS | 45.0% |
| ! | CCAGGACTGACCAATCATTT+TGG | + | chr3.3:93769070-93769089 | None:intergenic | 45.0% |
| ! | GATTCCTGTGATTGGTGGTA+AGG | - | chr3.3:93767749-93767768 | MS.gene69351:intron | 45.0% |
| ! | GCTAATTCAGGTTTCCACGA+TGG | + | chr3.3:93768189-93768208 | None:intergenic | 45.0% |
| ! | TAGCCACTCCTATTTGGCTT+TGG | + | chr3.3:93768979-93768998 | None:intergenic | 45.0% |
| ! | TCGTCGCTTTCACTTTCTCA+TGG | - | chr3.3:93767633-93767652 | MS.gene69351:intron | 45.0% |
| ! | TGATTTGCACGTTCTCTACG+TGG | - | chr3.3:93767776-93767795 | MS.gene69351:CDS | 45.0% |
| ! | TTTCTGGTAACAGTCCATCG+TGG | - | chr3.3:93768172-93768191 | MS.gene69351:intron | 45.0% |
| !! | AAAAGAAGCGCTTGTAGTGG+TGG | + | chr3.3:93767956-93767975 | None:intergenic | 45.0% |
| !!! | GAAGGAGAAACCGCTTTTTC+TGG | + | chr3.3:93768853-93768872 | None:intergenic | 45.0% |
| !!! | GAGAAACCGCTTTTTCTGGA+TGG | + | chr3.3:93768849-93768868 | None:intergenic | 45.0% |
| !! | AAATAATTGAATTTAAATTA+AGG | - | chr3.3:93768299-93768318 | MS.gene69351:intron | 5.0% |
| !! | AATAATTGAATTTAAATTAA+GGG | - | chr3.3:93768300-93768319 | MS.gene69351:intron | 5.0% |
| AAACTCATCGCTTGGGTAGG+AGG | - | chr3.3:93768920-93768939 | MS.gene69351:CDS | 50.0% | |
| ACCAAACTCATCGCTTGGGT+AGG | - | chr3.3:93768917-93768936 | MS.gene69351:CDS | 50.0% | |
| AGCTCCTTACCACCAATCAC+AGG | + | chr3.3:93767756-93767775 | None:intergenic | 50.0% | |
| GTTAACGACGTCGTTGTGAG+AGG | + | chr3.3:93767587-93767606 | None:intergenic | 50.0% | |
| TCCTACCCAAGCGATGAGTT+TGG | + | chr3.3:93768921-93768940 | None:intergenic | 50.0% | |
| CCTATTTACACCCCCTCACC+AGG | - | chr3.3:93768045-93768064 | MS.gene69351:CDS | 55.0% | |
| GCGGTGAGAAGCAAGAACTC+CGG | - | chr3.3:93767523-93767542 | MS.gene69351:CDS | 55.0% | |
| ! | CCTGGTGAGGGGGTGTAAAT+AGG | + | chr3.3:93768048-93768067 | None:intergenic | 55.0% |
| ACGTCGTTGTGAGAGGCGAG+TGG | + | chr3.3:93767580-93767599 | None:intergenic | 60.0% | |
| CGTCGTTGTGAGAGGCGAGT+GGG | + | chr3.3:93767579-93767598 | None:intergenic | 60.0% | |
| TTGTGAGAGGCGAGTGGGTG+AGG | + | chr3.3:93767574-93767593 | None:intergenic | 60.0% | |
| TTTGCCTTCGTCGTCGTCGC+CGG | + | chr3.3:93767545-93767564 | None:intergenic | 60.0% | |
| AACTCCGGCGACGACGACGA+AGG | - | chr3.3:93767538-93767557 | MS.gene69351:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 93767511 | 93769375 | 93767511 | ID=MS.gene69351 |
| chr3.3 | mRNA | 93767511 | 93769375 | 93767511 | ID=MS.gene69351.t1;Parent=MS.gene69351 |
| chr3.3 | exon | 93769218 | 93769375 | 93769218 | ID=MS.gene69351.t1.exon1;Parent=MS.gene69351.t1 |
| chr3.3 | CDS | 93769218 | 93769375 | 93769218 | ID=cds.MS.gene69351.t1;Parent=MS.gene69351.t1 |
| chr3.3 | exon | 93769059 | 93769137 | 93769059 | ID=MS.gene69351.t1.exon2;Parent=MS.gene69351.t1 |
| chr3.3 | CDS | 93769059 | 93769137 | 93769059 | ID=cds.MS.gene69351.t1;Parent=MS.gene69351.t1 |
| chr3.3 | exon | 93768820 | 93768985 | 93768820 | ID=MS.gene69351.t1.exon3;Parent=MS.gene69351.t1 |
| chr3.3 | CDS | 93768820 | 93768985 | 93768820 | ID=cds.MS.gene69351.t1;Parent=MS.gene69351.t1 |
| chr3.3 | exon | 93768622 | 93768720 | 93768622 | ID=MS.gene69351.t1.exon4;Parent=MS.gene69351.t1 |
| chr3.3 | CDS | 93768622 | 93768720 | 93768622 | ID=cds.MS.gene69351.t1;Parent=MS.gene69351.t1 |
| chr3.3 | exon | 93767770 | 93768155 | 93767770 | ID=MS.gene69351.t1.exon5;Parent=MS.gene69351.t1 |
| chr3.3 | CDS | 93767770 | 93768155 | 93767770 | ID=cds.MS.gene69351.t1;Parent=MS.gene69351.t1 |
| chr3.3 | exon | 93767511 | 93767618 | 93767511 | ID=MS.gene69351.t1.exon6;Parent=MS.gene69351.t1 |
| chr3.3 | CDS | 93767511 | 93767618 | 93767511 | ID=cds.MS.gene69351.t1;Parent=MS.gene69351.t1 |
| Gene Sequence |
| Protein sequence |
