Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70852.t1 | XP_024640189.1 | 80.1 | 680 | 18 | 1 | 1 | 563 | 1 | 680 | 0.00E+00 | 1089.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70852.t1 | Q9SZL8 | 37.1 | 275 | 167 | 3 | 193 | 466 | 365 | 634 | 8.2e-48 | 193.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70852.t1 | A0A396HW08 | 80.1 | 680 | 18 | 1 | 1 | 563 | 1 | 680 | 0.0e+00 | 1089.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene70852.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene70852 | 0.848964 | 4.38E-60 | -1.69E-46 |
| MS.gene049159 | MS.gene70852 | 0.821369 | 4.19E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene70852 | 0.83815 | 3.41E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene70852 | 0.845987 | 2.88E-59 | -1.69E-46 |
| MS.gene049501 | MS.gene70852 | 0.821429 | 4.06E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene70852 | 0.813118 | 3.01E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene70852 | 0.832288 | 1.03E-55 | -1.69E-46 |
| MS.gene050551 | MS.gene70852 | 0.806072 | 9.82E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene70852 | 0.814168 | 1.77E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene70852 | 0.801339 | 9.43E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene70852 | 0.829306 | 5.54E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene70852 | 0.820796 | 5.67E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene70852 | 0.835337 | 1.78E-56 | -1.69E-46 |
| MS.gene051388 | MS.gene70852 | 0.821877 | 3.20E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene70852 | 0.804405 | 2.19E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene70852 | 0.843136 | 1.69E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene70852 | 0.830556 | 2.75E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene70852 | 0.840107 | 1.06E-57 | -1.69E-46 |
| MS.gene051800 | MS.gene70852 | 0.821282 | 4.39E-53 | -1.69E-46 |
| MS.gene052012 | MS.gene70852 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene70852 | 0.822515 | 2.27E-53 | -1.69E-46 |
| MS.gene052037 | MS.gene70852 | 0.801009 | 1.10E-48 | -1.69E-46 |
| MS.gene052323 | MS.gene70852 | 0.821668 | 3.57E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene70852 | 0.807861 | 4.11E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene70852 | 0.819773 | 9.74E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene70852 | 0.839842 | 1.24E-57 | -1.69E-46 |
| MS.gene052519 | MS.gene70852 | 0.805847 | 1.10E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene70852 | 0.806323 | 8.70E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene70852 | 0.809312 | 2.01E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene70852 | 0.802332 | 5.90E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene70852 | 0.80651 | 7.94E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene70852 | 0.801313 | 9.55E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene70852 | 0.849546 | 3.02E-60 | -1.69E-46 |
| MS.gene053221 | MS.gene70852 | 0.807349 | 5.28E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene70852 | 0.864589 | 1.09E-64 | -1.69E-46 |
| MS.gene053621 | MS.gene70852 | 0.806571 | 7.71E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene70852 | 0.809416 | 1.91E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene70852 | 0.809103 | 2.23E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene70852 | 0.812533 | 4.04E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene70852 | 0.81005 | 1.40E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene70852 | 0.840821 | 6.90E-58 | -1.69E-46 |
| MS.gene054775 | MS.gene70852 | 0.845996 | 2.87E-59 | -1.69E-46 |
| MS.gene054991 | MS.gene70852 | 0.820824 | 5.59E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene70852 | 0.815369 | 9.58E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene70852 | 0.830899 | 2.26E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene70852 | 0.813317 | 2.72E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene70852 | 0.809968 | 1.46E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene70852 | 0.82915 | 6.05E-55 | -1.69E-46 |
| MS.gene055778 | MS.gene70852 | 0.811414 | 7.09E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene70852 | 0.819827 | 9.47E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene70852 | 0.818584 | 1.82E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene70852 | 0.83555 | 1.57E-56 | -1.69E-46 |
| MS.gene056162 | MS.gene70852 | 0.803646 | 3.16E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene70852 | 0.831761 | 1.39E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene70852 | 0.811837 | 5.73E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene70852 | 0.830418 | 2.97E-55 | -1.69E-46 |
| MS.gene056366 | MS.gene70852 | 0.828083 | 1.09E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene70852 | 0.805701 | 1.18E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene70852 | 0.816411 | 5.61E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene70852 | 0.842992 | 1.84E-58 | -1.69E-46 |
| MS.gene05690 | MS.gene70852 | 0.804946 | 1.69E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene70852 | 0.807695 | 4.46E-50 | -1.69E-46 |
| MS.gene057294 | MS.gene70852 | 0.802869 | 4.57E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene70852 | 0.803189 | 3.92E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene70852 | 0.835913 | 1.27E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene70852 | 0.806202 | 9.22E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene70852 | 0.84385 | 1.09E-58 | -1.69E-46 |
| MS.gene058636 | MS.gene70852 | 0.81426 | 1.69E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene70852 | 0.811526 | 6.70E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene70852 | 0.823734 | 1.18E-53 | -1.69E-46 |
| MS.gene059084 | MS.gene70852 | 0.813177 | 2.92E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene70852 | 0.823694 | 1.21E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene70852 | 0.836744 | 7.82E-57 | -1.69E-46 |
| MS.gene059725 | MS.gene70852 | 0.807602 | 4.67E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene70852 | 0.831592 | 1.53E-55 | -1.69E-46 |
| MS.gene059937 | MS.gene70852 | 0.805989 | 1.02E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene70852 | 0.832312 | 1.02E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene70852 | 0.834887 | 2.31E-56 | -1.69E-46 |
| MS.gene060637 | MS.gene70852 | 0.818451 | 1.95E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene70852 | 0.804287 | 2.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70852.t1 | MTR_0856s0010 | 61.250 | 160 | 52 | 2 | 1 | 150 | 1 | 160 | 2.08e-58 | 194 |
| MS.gene70852.t1 | MTR_5g089200 | 69.014 | 71 | 14 | 1 | 592 | 654 | 233 | 303 | 1.22e-19 | 93.2 |
| MS.gene70852.t1 | MTR_5g089280 | 66.197 | 71 | 16 | 1 | 592 | 654 | 241 | 311 | 6.18e-19 | 91.3 |
| MS.gene70852.t1 | MTR_5g089280 | 66.197 | 71 | 16 | 1 | 592 | 654 | 241 | 311 | 6.25e-19 | 90.9 |
| MS.gene70852.t1 | MTR_6g022070 | 29.412 | 153 | 102 | 3 | 198 | 348 | 1 | 149 | 2.38e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70852.t1 | AT4G38180 | 37.091 | 275 | 167 | 3 | 193 | 466 | 365 | 634 | 7.32e-53 | 195 |
| MS.gene70852.t1 | AT4G15090 | 31.579 | 361 | 225 | 6 | 193 | 547 | 341 | 685 | 1.06e-50 | 189 |
| MS.gene70852.t1 | AT4G15090 | 31.579 | 361 | 225 | 6 | 193 | 547 | 341 | 685 | 1.06e-50 | 189 |
| MS.gene70852.t1 | AT4G15090 | 31.579 | 361 | 225 | 6 | 193 | 547 | 341 | 685 | 1.06e-50 | 189 |
| MS.gene70852.t1 | AT4G15090 | 31.579 | 361 | 225 | 6 | 193 | 547 | 341 | 685 | 1.06e-50 | 189 |
| MS.gene70852.t1 | AT4G15090 | 31.579 | 361 | 225 | 6 | 193 | 547 | 341 | 685 | 1.06e-50 | 189 |
| MS.gene70852.t1 | AT1G52520 | 33.131 | 329 | 217 | 3 | 193 | 518 | 362 | 690 | 1.29e-50 | 187 |
| MS.gene70852.t1 | AT3G22170 | 32.787 | 305 | 194 | 3 | 205 | 508 | 362 | 656 | 7.39e-49 | 184 |
| MS.gene70852.t1 | AT3G22170 | 32.787 | 305 | 194 | 3 | 205 | 508 | 362 | 656 | 7.39e-49 | 184 |
| MS.gene70852.t1 | AT2G32250 | 32.523 | 329 | 208 | 6 | 193 | 518 | 285 | 602 | 5.47e-44 | 169 |
| MS.gene70852.t1 | AT2G32250 | 32.523 | 329 | 208 | 6 | 193 | 518 | 285 | 602 | 5.58e-44 | 169 |
| MS.gene70852.t1 | AT2G32250 | 32.523 | 329 | 208 | 6 | 193 | 518 | 285 | 602 | 5.58e-44 | 169 |
| MS.gene70852.t1 | AT2G32250 | 32.523 | 329 | 208 | 6 | 193 | 518 | 285 | 602 | 5.74e-44 | 169 |
| MS.gene70852.t1 | AT2G32250 | 32.523 | 329 | 208 | 6 | 193 | 518 | 285 | 602 | 5.74e-44 | 169 |
| MS.gene70852.t1 | AT2G32250 | 32.523 | 329 | 208 | 6 | 193 | 518 | 285 | 602 | 5.74e-44 | 169 |
| MS.gene70852.t1 | AT2G32250 | 32.523 | 329 | 208 | 6 | 193 | 518 | 244 | 561 | 6.82e-44 | 169 |
| MS.gene70852.t1 | AT2G32250 | 32.523 | 329 | 208 | 6 | 193 | 518 | 244 | 561 | 7.10e-44 | 169 |
| MS.gene70852.t1 | AT1G76320 | 32.326 | 331 | 208 | 6 | 193 | 518 | 278 | 597 | 1.08e-43 | 167 |
| MS.gene70852.t1 | AT1G76320 | 32.326 | 331 | 208 | 6 | 193 | 518 | 278 | 597 | 1.83e-43 | 167 |
| MS.gene70852.t1 | AT1G76320 | 32.326 | 331 | 208 | 6 | 193 | 518 | 278 | 597 | 2.10e-43 | 167 |
| MS.gene70852.t1 | AT1G76320 | 32.326 | 331 | 208 | 6 | 193 | 518 | 278 | 597 | 2.10e-43 | 167 |
| MS.gene70852.t1 | AT4G38170 | 31.618 | 272 | 180 | 3 | 196 | 466 | 133 | 399 | 9.12e-42 | 159 |
| MS.gene70852.t1 | AT3G06250 | 31.250 | 272 | 177 | 4 | 193 | 464 | 441 | 702 | 4.75e-37 | 148 |
| MS.gene70852.t1 | AT3G06250 | 31.250 | 272 | 177 | 4 | 193 | 464 | 441 | 702 | 4.75e-37 | 148 |
| MS.gene70852.t1 | AT3G06250 | 31.250 | 272 | 177 | 4 | 193 | 464 | 441 | 702 | 4.75e-37 | 148 |
| MS.gene70852.t1 | AT4G19990 | 30.195 | 308 | 202 | 5 | 188 | 492 | 229 | 526 | 1.52e-36 | 146 |
| MS.gene70852.t1 | AT4G19990 | 30.195 | 308 | 202 | 5 | 188 | 492 | 286 | 583 | 2.49e-36 | 146 |
| MS.gene70852.t1 | AT4G19990 | 30.195 | 308 | 202 | 5 | 188 | 492 | 286 | 583 | 2.49e-36 | 146 |
| MS.gene70852.t1 | AT4G19990 | 30.195 | 308 | 202 | 5 | 188 | 492 | 286 | 583 | 2.72e-36 | 145 |
| MS.gene70852.t1 | AT2G27110 | 29.781 | 319 | 211 | 6 | 193 | 508 | 312 | 620 | 2.94e-36 | 146 |
| MS.gene70852.t1 | AT2G27110 | 29.781 | 319 | 211 | 6 | 193 | 508 | 312 | 620 | 2.94e-36 | 146 |
| MS.gene70852.t1 | AT4G19990 | 30.195 | 308 | 202 | 5 | 188 | 492 | 300 | 597 | 3.12e-36 | 145 |
| MS.gene70852.t1 | AT2G27110 | 29.781 | 319 | 211 | 6 | 193 | 508 | 167 | 475 | 3.79e-36 | 145 |
| MS.gene70852.t1 | AT4G19990 | 30.065 | 306 | 205 | 4 | 188 | 492 | 286 | 583 | 3.93e-36 | 145 |
| MS.gene70852.t1 | AT4G19990 | 30.065 | 306 | 205 | 4 | 188 | 492 | 286 | 583 | 3.93e-36 | 145 |
| MS.gene70852.t1 | AT5G18960 | 29.932 | 294 | 195 | 5 | 193 | 485 | 465 | 748 | 6.84e-35 | 142 |
| MS.gene70852.t1 | AT5G18960 | 29.932 | 294 | 195 | 5 | 193 | 485 | 465 | 748 | 6.84e-35 | 142 |
| MS.gene70852.t1 | AT1G80010 | 28.159 | 277 | 196 | 3 | 193 | 467 | 387 | 662 | 2.51e-29 | 124 |
| MS.gene70852.t1 | AT1G10240 | 26.502 | 283 | 187 | 6 | 186 | 463 | 338 | 604 | 1.79e-25 | 112 |
| MS.gene70852.t1 | AT1G10240 | 26.502 | 283 | 187 | 6 | 186 | 463 | 338 | 604 | 1.79e-25 | 112 |
| MS.gene70852.t1 | AT5G28530 | 20.962 | 520 | 310 | 14 | 27 | 463 | 50 | 551 | 1.70e-19 | 93.2 |
| MS.gene70852.t1 | AT5G28530 | 20.769 | 520 | 315 | 14 | 27 | 463 | 50 | 555 | 1.31e-18 | 90.5 |
| MS.gene70852.t1 | AT5G12200 | 60.563 | 71 | 20 | 1 | 592 | 654 | 229 | 299 | 3.54e-17 | 85.5 |
| MS.gene70852.t1 | AT5G28530 | 23.792 | 269 | 187 | 5 | 197 | 463 | 362 | 614 | 1.98e-16 | 83.6 |
| MS.gene70852.t1 | AT5G28530 | 23.792 | 269 | 187 | 5 | 197 | 463 | 362 | 614 | 1.98e-16 | 83.6 |
| MS.gene70852.t1 | AT5G28530 | 23.420 | 269 | 192 | 5 | 197 | 463 | 362 | 618 | 1.62e-15 | 80.9 |
Find 106 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGAACTTCTTTGAATT+TGG | 0.140264 | 5.3:-71983657 | None:intergenic |
| AACAATGAACAGCATTTAAT+TGG | 0.170712 | 5.3:+71982756 | MS.gene70852:CDS |
| TAGAGAGTATGCTTTGAAAA+AGG | 0.184139 | 5.3:+71982353 | MS.gene70852:CDS |
| CGAGGGAGCACAATTCATTT+TGG | 0.189374 | 5.3:-71983690 | None:intergenic |
| CACGCCATAGGTGGTGTTTA+TGG | 0.257699 | 5.3:+71983186 | MS.gene70852:CDS |
| CTTGGACTAACTGGTCTTAA+AGG | 0.272670 | 5.3:+71985324 | MS.gene70852:CDS |
| TAAATTGATGTAATGTTTCA+TGG | 0.277147 | 5.3:-71984096 | None:intergenic |
| CTTCAAAGTTGTGTTTAATC+AGG | 0.287821 | 5.3:+71983793 | MS.gene70852:CDS |
| ACGAATACAGTGAATATAAA+AGG | 0.308487 | 5.3:+71983240 | MS.gene70852:CDS |
| GACCAGCCCTACAAAGAAAA+TGG | 0.313866 | 5.3:+71982596 | MS.gene70852:CDS |
| TGTTCGTTGTTTGAGTTTAG+AGG | 0.315013 | 5.3:+71983839 | MS.gene70852:CDS |
| AATAGATCGGAAAGTCTTAA+TGG | 0.322660 | 5.3:-71982670 | None:intergenic |
| ATGATAGAACTTGGACTAAC+TGG | 0.323580 | 5.3:+71985315 | MS.gene70852:CDS |
| TGAATTCCAGCACCATTGTT+TGG | 0.354475 | 5.3:-71984178 | None:intergenic |
| TTCCAACTTAATACAAATCT+TGG | 0.361351 | 5.3:-71982523 | None:intergenic |
| TGCCAAGATTTGTATTAAGT+TGG | 0.381892 | 5.3:+71982521 | MS.gene70852:CDS |
| TTGAAACTTCATGGATAGTT+CGG | 0.390728 | 5.3:+71982200 | None:intergenic |
| TTATGCTTCAACATAATGAT+TGG | 0.395255 | 5.3:+71983348 | MS.gene70852:CDS |
| TGGAATTCACAGTCCATTGC+GGG | 0.395864 | 5.3:+71984192 | MS.gene70852:CDS |
| TATGATACACACACAACAAC+TGG | 0.402034 | 5.3:+71983290 | MS.gene70852:CDS |
| AGCATGCATGCTTTCTTTGA+TGG | 0.408186 | 5.3:+71983464 | MS.gene70852:CDS |
| CACCACCTATGGCGTGTTGT+AGG | 0.409794 | 5.3:-71983179 | None:intergenic |
| TTAAAGGACATCTTCTTTCA+AGG | 0.412333 | 5.3:+71985340 | MS.gene70852:CDS |
| GCATGTTGGAAGCCTGCAAC+GGG | 0.415038 | 5.3:+71982291 | MS.gene70852:CDS |
| CTTTGCTACTTATCATGTGT+TGG | 0.420954 | 5.3:+71983733 | MS.gene70852:CDS |
| TGCTACTTATCATGTGTTGG+AGG | 0.424099 | 5.3:+71983736 | MS.gene70852:CDS |
| TGTATGAAGAGCGTCATAGA+TGG | 0.424359 | 5.3:+71983381 | MS.gene70852:CDS |
| ATCGTGAAGGTTCTAAAATC+AGG | 0.426549 | 5.3:+71985572 | MS.gene70852:CDS |
| CTTGTTAAAACATACTTCTC+TGG | 0.429704 | 5.3:-71983917 | None:intergenic |
| AATGTGTAGGAGTGCAATAT+TGG | 0.431270 | 5.3:+71984350 | MS.gene70852:intron |
| CAGCATTTAATTGGAAAAGA+AGG | 0.443510 | 5.3:+71982765 | MS.gene70852:CDS |
| CTGTCTGTCATTACTTCGCT+TGG | 0.445713 | 5.3:-71984241 | None:intergenic |
| AACATTCACAGCTGAAATCA+TGG | 0.450961 | 5.3:-71983820 | None:intergenic |
| TTGGAGGAGGTTGTAGTTGG+AGG | 0.455878 | 5.3:+71983752 | MS.gene70852:CDS |
| ACATCAATTTAAGTGTAGTA+AGG | 0.462673 | 5.3:+71984108 | MS.gene70852:CDS |
| CAACAGAAAATGATAGAACT+TGG | 0.466596 | 5.3:+71985306 | MS.gene70852:CDS |
| ATTGAGGTTGTCAGTGGTGG+TGG | 0.468328 | 5.3:+71984419 | MS.gene70852:CDS |
| AATGGAGATGATATTTATGC+AGG | 0.469291 | 5.3:+71985282 | MS.gene70852:CDS |
| TGTATTAAGTTGGAAAAGGA+TGG | 0.471002 | 5.3:+71982531 | MS.gene70852:CDS |
| GCATGCATGCTTTCTTTGAT+GGG | 0.490315 | 5.3:+71983465 | MS.gene70852:CDS |
| AGTTGGAAAAGGATGGTTTG+TGG | 0.490374 | 5.3:+71982538 | MS.gene70852:CDS |
| GTGTTGGAGGAGGTTGTAGT+TGG | 0.490830 | 5.3:+71983749 | MS.gene70852:CDS |
| GATTTGTATTAAGTTGGAAA+AGG | 0.491914 | 5.3:+71982527 | MS.gene70852:CDS |
| CAACATAATGATTGGTTGAG+TGG | 0.494843 | 5.3:+71983356 | MS.gene70852:CDS |
| TCAAATCCAAACAATGGTGC+TGG | 0.496584 | 5.3:+71984172 | MS.gene70852:CDS |
| AATTGAAGCCACAGATGGAC+AGG | 0.502360 | 5.3:+71983999 | MS.gene70852:CDS |
| AACTTAATACAAATCTTGGC+AGG | 0.506782 | 5.3:-71982519 | None:intergenic |
| ATCTGTGTGTTCACGAGAGA+GGG | 0.507673 | 5.3:+71983883 | MS.gene70852:CDS |
| TGTAATGAGCATTGATGTAA+TGG | 0.508685 | 5.3:+71985544 | MS.gene70852:CDS |
| ACCACCTATGGCGTGTTGTA+GGG | 0.509756 | 5.3:-71983178 | None:intergenic |
| ATTCTTGTTTGCACAAGAGA+GGG | 0.511572 | 5.3:+71982435 | MS.gene70852:CDS |
| AGAATCTGAAGATGCAACTA+AGG | 0.521210 | 5.3:+71984069 | MS.gene70852:CDS |
| CGGGTTAAATGTGAAGATCA+AGG | 0.521428 | 5.3:+71984211 | MS.gene70852:CDS |
| TATGCCATAAACACCACCTA+TGG | 0.521771 | 5.3:-71983190 | None:intergenic |
| TACTTATCATGTGTTGGAGG+AGG | 0.523219 | 5.3:+71983739 | MS.gene70852:CDS |
| ATCGAAATCAATGATGATGC+AGG | 0.524055 | 5.3:+71982639 | MS.gene70852:CDS |
| AACATAATGATTGGTTGAGT+GGG | 0.524704 | 5.3:+71983357 | MS.gene70852:CDS |
| GCAAACAAGAATTGCATAGC+AGG | 0.525492 | 5.3:-71982424 | None:intergenic |
| TGCACAAGAGAGGGGTCTCA+AGG | 0.531486 | 5.3:+71982444 | MS.gene70852:CDS |
| ATCTATGTAGTTGGAAGGAG+AGG | 0.532620 | 5.3:+71985487 | MS.gene70852:intron |
| AAGCATAAACTTGTCGATGA+AGG | 0.533024 | 5.3:-71983333 | None:intergenic |
| TCTTCACATTTAACCCGCAA+TGG | 0.533346 | 5.3:-71984205 | None:intergenic |
| TAGTATTCATGATGAAGGTA+TGG | 0.538379 | 5.3:+71982242 | MS.gene70852:CDS |
| CCCTCGTTGAATGTTGTCGA+GGG | 0.543640 | 5.3:+71983707 | MS.gene70852:CDS |
| TGTGATAGTATTCATGATGA+AGG | 0.546656 | 5.3:+71982237 | MS.gene70852:CDS |
| CAATTTAAGTGTAGTAAGGA+TGG | 0.555667 | 5.3:+71984112 | MS.gene70852:CDS |
| TTTATATCTATGTAGTTGGA+AGG | 0.557118 | 5.3:+71985482 | MS.gene70852:intron |
| CCACATTGTTGACAATAGAT+CGG | 0.560186 | 5.3:-71982683 | None:intergenic |
| AGGATCAAGTCTGCGATGGA+AGG | 0.560217 | 5.3:+71983260 | MS.gene70852:CDS |
| TATCTGTGTGTTCACGAGAG+AGG | 0.565938 | 5.3:+71983882 | MS.gene70852:CDS |
| TAAAAGGATCAAGTCTGCGA+TGG | 0.569182 | 5.3:+71983256 | MS.gene70852:CDS |
| TTGTCAAACCTGTCCATCTG+TGG | 0.569297 | 5.3:-71984007 | None:intergenic |
| TCTATTGTCAACAATGTGGA+AGG | 0.572398 | 5.3:+71982687 | MS.gene70852:CDS |
| TCCCTCGTTGAATGTTGTCG+AGG | 0.574922 | 5.3:+71983706 | MS.gene70852:CDS |
| GTATGAAGAGCGTCATAGAT+GGG | 0.575034 | 5.3:+71983382 | MS.gene70852:CDS |
| CTGGAATTCACAGTCCATTG+CGG | 0.575404 | 5.3:+71984191 | MS.gene70852:CDS |
| TGGCATGAGTGTACTCACCT+TGG | 0.576261 | 5.3:-71983637 | None:intergenic |
| AATTCTTGTTTGCACAAGAG+AGG | 0.579543 | 5.3:+71982434 | MS.gene70852:CDS |
| CTATGTAGAATCATCTATTG+AGG | 0.583723 | 5.3:+71984403 | MS.gene70852:CDS |
| AGCATGTTGGAAGCCTGCAA+CGG | 0.586912 | 5.3:+71982290 | MS.gene70852:CDS |
| TCCATTGAAAAGCAATTCCA+AGG | 0.588119 | 5.3:+71983620 | MS.gene70852:CDS |
| AGTTGCATCTTCAGATTCTG+CGG | 0.590083 | 5.3:-71984065 | None:intergenic |
| TATTGTGACAGACCAATGTA+AGG | 0.594260 | 5.3:+71983127 | MS.gene70852:intron |
| TCTATTGAGGTTGTCAGTGG+TGG | 0.597149 | 5.3:+71984416 | MS.gene70852:CDS |
| CTGATGATGATGAAGCATGT+TGG | 0.601790 | 5.3:+71982277 | MS.gene70852:CDS |
| ATGGAGATGATATTTATGCA+GGG | 0.602172 | 5.3:+71985283 | MS.gene70852:CDS |
| TCTTCTTTCAAGGCGTGCAG+TGG | 0.604982 | 5.3:+71985350 | MS.gene70852:CDS |
| CATGCTCTCACTTCGCTGCG+TGG | 0.605795 | 5.3:-71983447 | None:intergenic |
| TGTAGGGAAGACTAACTCAA+TGG | 0.612233 | 5.3:-71983162 | None:intergenic |
| TCTTCCCTACAACACGCCAT+AGG | 0.617216 | 5.3:+71983174 | MS.gene70852:CDS |
| GATGACTCAAATCCAAACAA+TGG | 0.622244 | 5.3:+71984166 | MS.gene70852:CDS |
| TTCTTGTTTGCACAAGAGAG+GGG | 0.624091 | 5.3:+71982436 | MS.gene70852:CDS |
| GCACAAGAGAGGGGTCTCAA+GGG | 0.625092 | 5.3:+71982445 | MS.gene70852:CDS |
| TCCCTACAACACGCCATAGG+TGG | 0.629132 | 5.3:+71983177 | MS.gene70852:CDS |
| GAGAGAATTGAAGCCACAGA+TGG | 0.631735 | 5.3:+71983994 | MS.gene70852:CDS |
| TCAATGATGATGCAGGAGTG+AGG | 0.638777 | 5.3:+71982646 | MS.gene70852:CDS |
| TCATCTATTGAGGTTGTCAG+TGG | 0.640747 | 5.3:+71984413 | MS.gene70852:CDS |
| CCGATCTATTGTCAACAATG+TGG | 0.642532 | 5.3:+71982683 | MS.gene70852:CDS |
| CCCTCGACAACATTCAACGA+GGG | 0.645738 | 5.3:-71983707 | None:intergenic |
| CTATTGTCAACAATGTGGAA+GGG | 0.651998 | 5.3:+71982688 | MS.gene70852:CDS |
| CAGATAACACATGACAACAC+AGG | 0.666939 | 5.3:-71983865 | None:intergenic |
| TCGCGCTATTCACTTATACG+TGG | 0.671636 | 5.3:+71985517 | MS.gene70852:CDS |
| GTAGGAGTGCAATATTGGAA+TGG | 0.673951 | 5.3:+71984355 | MS.gene70852:intron |
| TGTAATGGAAGAAATCGTGA+AGG | 0.687566 | 5.3:+71985559 | MS.gene70852:CDS |
| CATGTTGGAAGCCTGCAACG+GGG | 0.757747 | 5.3:+71982292 | MS.gene70852:CDS |
| ACCCTCGACAACATTCAACG+AGG | 0.768012 | 5.3:-71983708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTTATGTACTTTATT+AGG | + | chr5.3:71984604-71984623 | MS.gene70852:intron | 10.0% |
| !!! | TAGTTAACATAATTTTATAA+TGG | - | chr5.3:71984475-71984494 | None:intergenic | 10.0% |
| !! | ATTCAATATACATACATATA+TGG | - | chr5.3:71984310-71984329 | None:intergenic | 15.0% |
| !! | TAACATTTCTAATGAAAATA+AGG | + | chr5.3:71984730-71984749 | MS.gene70852:intron | 15.0% |
| !! | TTAACTAATGTTTAAATTCA+TGG | + | chr5.3:71984488-71984507 | MS.gene70852:intron | 15.0% |
| !!! | ATTTGTTTACTTTTGAAATA+GGG | + | chr5.3:71985090-71985109 | MS.gene70852:intron | 15.0% |
| !!! | CTTTGTAAGAAAATATTTTT+GGG | + | chr5.3:71983412-71983431 | MS.gene70852:CDS | 15.0% |
| !!! | TATTTGTTTACTTTTGAAAT+AGG | + | chr5.3:71985089-71985108 | MS.gene70852:intron | 15.0% |
| !! | CATATTTATATCTATGTAGT+TGG | + | chr5.3:71985478-71985497 | MS.gene70852:intron | 20.0% |
| !! | GATGGAAGAAAAATATTAAA+AGG | + | chr5.3:71983939-71983958 | MS.gene70852:CDS | 20.0% |
| !! | TAAATTGATGTAATGTTTCA+TGG | - | chr5.3:71984099-71984118 | None:intergenic | 20.0% |
| !!! | AAATATTTTCTTACAAAGGT+TGG | - | chr5.3:71983410-71983429 | None:intergenic | 20.0% |
| !!! | CCAAAAATATTTTCTTACAA+AGG | - | chr5.3:71983414-71983433 | None:intergenic | 20.0% |
| !!! | CCTTTGTAAGAAAATATTTT+TGG | + | chr5.3:71983411-71983430 | MS.gene70852:CDS | 20.0% |
| ! | AACAATGAACAGCATTTAAT+TGG | + | chr5.3:71982756-71982775 | MS.gene70852:CDS | 25.0% |
| ! | AATACAAAAACCACAAACAA+AGG | - | chr5.3:71985073-71985092 | None:intergenic | 25.0% |
| ! | ACATCAATTTAAGTGTAGTA+AGG | + | chr5.3:71984108-71984127 | MS.gene70852:CDS | 25.0% |
| ! | ACGAATACAGTGAATATAAA+AGG | + | chr5.3:71983240-71983259 | MS.gene70852:CDS | 25.0% |
| ! | ACTCATAGTTTATTGATAAG+TGG | + | chr5.3:71984905-71984924 | MS.gene70852:intron | 25.0% |
| ! | ATTGAGAATAGTTTATGTAC+TGG | + | chr5.3:71984686-71984705 | MS.gene70852:intron | 25.0% |
| ! | CAACTTGTGTTTAAATACTA+CGG | - | chr5.3:71984956-71984975 | None:intergenic | 25.0% |
| ! | CTCATAGTTTATTGATAAGT+GGG | + | chr5.3:71984906-71984925 | MS.gene70852:intron | 25.0% |
| ! | GATAACTTATGTAGTAGTTT+AGG | + | chr5.3:71984648-71984667 | MS.gene70852:intron | 25.0% |
| ! | TTATGCTTCAACATAATGAT+TGG | + | chr5.3:71983348-71983367 | MS.gene70852:CDS | 25.0% |
| ! | TTCCAACTTAATACAAATCT+TGG | - | chr5.3:71982526-71982545 | None:intergenic | 25.0% |
| ! | TTCCATATCAGTTACTAAAT+GGG | + | chr5.3:71984779-71984798 | MS.gene70852:intron | 25.0% |
| ! | TTTATATCTATGTAGTTGGA+AGG | + | chr5.3:71985482-71985501 | MS.gene70852:intron | 25.0% |
| !!! | AGAAGTATGTTTTAACAAGA+TGG | + | chr5.3:71983921-71983940 | MS.gene70852:CDS | 25.0% |
| !!! | CTACTCTTTTAAGTTTTTCA+TGG | + | chr5.3:71985204-71985223 | MS.gene70852:intron | 25.0% |
| !!! | GAGCTATTTTTCTAAAATGA+GGG | + | chr5.3:71982806-71982825 | MS.gene70852:intron | 25.0% |
| !!! | GATTTGTATTAAGTTGGAAA+AGG | + | chr5.3:71982527-71982546 | MS.gene70852:CDS | 25.0% |
| !!! | TGAGCTATTTTTCTAAAATG+AGG | + | chr5.3:71982805-71982824 | MS.gene70852:intron | 25.0% |
| !!! | TGATTTTGATGAACAACATT+TGG | + | chr5.3:71985390-71985409 | MS.gene70852:intron | 25.0% |
| !!! | TTTAAGTTTTTCATGGTACA+AGG | + | chr5.3:71985211-71985230 | MS.gene70852:intron | 25.0% |
| !!! | TTTTATTTGTCCAAATGTGT+AGG | + | chr5.3:71984337-71984356 | MS.gene70852:intron | 25.0% |
| AACTTAATACAAATCTTGGC+AGG | - | chr5.3:71982522-71982541 | None:intergenic | 30.0% | |
| AATAGATCGGAAAGTCTTAA+TGG | - | chr5.3:71982673-71982692 | None:intergenic | 30.0% | |
| AATCAACATTACTTGGATGT+GGG | + | chr5.3:71983021-71983040 | MS.gene70852:intron | 30.0% | |
| AATGGAGATGATATTTATGC+AGG | + | chr5.3:71985282-71985301 | MS.gene70852:CDS | 30.0% | |
| ACATCGAAAAAAAGAGATGA+TGG | + | chr5.3:71982396-71982415 | MS.gene70852:CDS | 30.0% | |
| AGCAGAAAAAGAATTTGAAG+CGG | + | chr5.3:71983553-71983572 | MS.gene70852:CDS | 30.0% | |
| AGCTTGAACTTCTTTGAATT+TGG | - | chr5.3:71983660-71983679 | None:intergenic | 30.0% | |
| ATGGAGATGATATTTATGCA+GGG | + | chr5.3:71985283-71985302 | MS.gene70852:CDS | 30.0% | |
| ATTCCTCAAAACTCACTTAA+AGG | - | chr5.3:71985142-71985161 | None:intergenic | 30.0% | |
| ATTTAAGAATGCATGTCTCT+TGG | + | chr5.3:71985234-71985253 | MS.gene70852:intron | 30.0% | |
| CAACAGAAAATGATAGAACT+TGG | + | chr5.3:71985306-71985325 | MS.gene70852:CDS | 30.0% | |
| CAATTTAAGTGTAGTAAGGA+TGG | + | chr5.3:71984112-71984131 | MS.gene70852:CDS | 30.0% | |
| CAGCATTTAATTGGAAAAGA+AGG | + | chr5.3:71982765-71982784 | MS.gene70852:CDS | 30.0% | |
| CTATGCAAACACTAATAGAA+AGG | + | chr5.3:71984978-71984997 | MS.gene70852:intron | 30.0% | |
| CTATGTAGAATCATCTATTG+AGG | + | chr5.3:71984403-71984422 | MS.gene70852:CDS | 30.0% | |
| CTTCAAAGTTGTGTTTAATC+AGG | + | chr5.3:71983793-71983812 | MS.gene70852:CDS | 30.0% | |
| CTTCCATATCAGTTACTAAA+TGG | + | chr5.3:71984778-71984797 | MS.gene70852:intron | 30.0% | |
| CTTGTTAAAACATACTTCTC+TGG | - | chr5.3:71983920-71983939 | None:intergenic | 30.0% | |
| GATAACATATGTACTAGTTG+AGG | + | chr5.3:71984626-71984645 | MS.gene70852:intron | 30.0% | |
| GGAGAATACATAATTTCTGA+AGG | - | chr5.3:71984289-71984308 | None:intergenic | 30.0% | |
| TAGTATTCATGATGAAGGTA+TGG | + | chr5.3:71982242-71982261 | MS.gene70852:CDS | 30.0% | |
| TGCCAAGATTTGTATTAAGT+TGG | + | chr5.3:71982521-71982540 | MS.gene70852:CDS | 30.0% | |
| TGTAATCATATAGCACCAAA+AGG | - | chr5.3:71984864-71984883 | None:intergenic | 30.0% | |
| TGTGATAGTATTCATGATGA+AGG | + | chr5.3:71982237-71982256 | MS.gene70852:CDS | 30.0% | |
| TTAAAGGACATCTTCTTTCA+AGG | + | chr5.3:71985340-71985359 | MS.gene70852:CDS | 30.0% | |
| TTAATTGGAAAAGAAGGTGA+TGG | + | chr5.3:71982771-71982790 | MS.gene70852:intron | 30.0% | |
| TTCAAAGGAAATGAAAATCG+TGG | + | chr5.3:71984812-71984831 | MS.gene70852:intron | 30.0% | |
| TTTCTTCTACGACATAGATT+TGG | + | chr5.3:71982842-71982861 | MS.gene70852:intron | 30.0% | |
| ! | AAAAAGTCTTGCATGGATTA+TGG | + | chr5.3:71984755-71984774 | MS.gene70852:intron | 30.0% |
| ! | AAAAGGCATGTCATACTTAT+TGG | - | chr5.3:71982970-71982989 | None:intergenic | 30.0% |
| ! | AACATAATGATTGGTTGAGT+GGG | + | chr5.3:71983357-71983376 | MS.gene70852:CDS | 30.0% |
| ! | AATCCTTTAAGTGAGTTTTG+AGG | + | chr5.3:71985136-71985155 | MS.gene70852:intron | 30.0% |
| ! | AGAGCTACTTATGAGTATTT+TGG | + | chr5.3:71982912-71982931 | MS.gene70852:intron | 30.0% |
| ! | TCATGTAAGGAATGTGTTTT+GGG | + | chr5.3:71982875-71982894 | MS.gene70852:intron | 30.0% |
| ! | TTCATGTAAGGAATGTGTTT+TGG | + | chr5.3:71982874-71982893 | MS.gene70852:intron | 30.0% |
| !! | AATAGTTTATGTACTGGTTG+AGG | + | chr5.3:71984692-71984711 | MS.gene70852:intron | 30.0% |
| !! | AGAGAGTATGCTTTGAAAAA+GGG | + | chr5.3:71982354-71982373 | MS.gene70852:CDS | 30.0% |
| !! | ATCATGTCTTTTTCGCAAAA+TGG | - | chr5.3:71982726-71982745 | None:intergenic | 30.0% |
| !! | TAGAGAGTATGCTTTGAAAA+AGG | + | chr5.3:71982353-71982372 | MS.gene70852:CDS | 30.0% |
| !! | TGTAATGAGCATTGATGTAA+TGG | + | chr5.3:71985544-71985563 | MS.gene70852:CDS | 30.0% |
| !! | TGTATTAAGTTGGAAAAGGA+TGG | + | chr5.3:71982531-71982550 | MS.gene70852:CDS | 30.0% |
| !! | TTTGGTGCTATATGATTACA+TGG | + | chr5.3:71984864-71984883 | MS.gene70852:intron | 30.0% |
| !!! | ACAATTTTTTGTCTTAGGTG+GGG | - | chr5.3:71982499-71982518 | None:intergenic | 30.0% |
| !!! | AGTTTTGAGGAATTGATTTC+TGG | + | chr5.3:71985149-71985168 | MS.gene70852:intron | 30.0% |
| !!! | ATCTCTTTTTTTCGATGTTC+TGG | - | chr5.3:71982394-71982413 | None:intergenic | 30.0% |
| !!! | ATGCTTTGAAAAAGGGTTTT+CGG | + | chr5.3:71982361-71982380 | MS.gene70852:CDS | 30.0% |
| !!! | CAACTGGTTTTGAAGATAAA+TGG | + | chr5.3:71983306-71983325 | MS.gene70852:CDS | 30.0% |
| !!! | GACAATTTTTTGTCTTAGGT+GGG | - | chr5.3:71982500-71982519 | None:intergenic | 30.0% |
| !!! | GTAAGAAAATATTTTTGGGC+AGG | + | chr5.3:71983416-71983435 | MS.gene70852:CDS | 30.0% |
| AACATTCACAGCTGAAATCA+TGG | - | chr5.3:71983823-71983842 | None:intergenic | 35.0% | |
| AAGCATAAACTTGTCGATGA+AGG | - | chr5.3:71983336-71983355 | None:intergenic | 35.0% | |
| ACACCTACAAATGTAGCAAA+AGG | - | chr5.3:71982987-71983006 | None:intergenic | 35.0% | |
| AGAATCTGAAGATGCAACTA+AGG | + | chr5.3:71984069-71984088 | MS.gene70852:CDS | 35.0% | |
| ATATTGCACTCCTACACATT+TGG | - | chr5.3:71984350-71984369 | None:intergenic | 35.0% | |
| ATGATAGAACTTGGACTAAC+TGG | + | chr5.3:71985315-71985334 | MS.gene70852:CDS | 35.0% | |
| CAAGTGGTAATCTTGTAAAC+TGG | + | chr5.3:71984929-71984948 | MS.gene70852:intron | 35.0% | |
| CAATATTCGATCACAGAGTT+TGG | - | chr5.3:71985045-71985064 | None:intergenic | 35.0% | |
| CAATCAACATTACTTGGATG+TGG | + | chr5.3:71983020-71983039 | MS.gene70852:intron | 35.0% | |
| CACCAAAAGGAAATAAACAC+CGG | - | chr5.3:71984851-71984870 | None:intergenic | 35.0% | |
| CATGGTCAATCAACATTACT+TGG | + | chr5.3:71983014-71983033 | MS.gene70852:intron | 35.0% | |
| CCACATTGTTGACAATAGAT+CGG | - | chr5.3:71982686-71982705 | None:intergenic | 35.0% | |
| CTATTGTCAACAATGTGGAA+GGG | + | chr5.3:71982688-71982707 | MS.gene70852:CDS | 35.0% | |
| GATGACTCAAATCCAAACAA+TGG | + | chr5.3:71984166-71984185 | MS.gene70852:CDS | 35.0% | |
| GATTACATGGTAACAAGTGT+TGG | + | chr5.3:71984877-71984896 | MS.gene70852:intron | 35.0% | |
| GGAAACATATGTACTAGTTC+AGG | + | chr5.3:71984560-71984579 | MS.gene70852:intron | 35.0% | |
| GTCCCATTTAGTAACTGATA+TGG | - | chr5.3:71984784-71984803 | None:intergenic | 35.0% | |
| TAAGGCAAAAAAGTCTTGCA+TGG | + | chr5.3:71984748-71984767 | MS.gene70852:intron | 35.0% | |
| TATGATACACACACAACAAC+TGG | + | chr5.3:71983290-71983309 | MS.gene70852:CDS | 35.0% | |
| TATTGTGACAGACCAATGTA+AGG | + | chr5.3:71983127-71983146 | MS.gene70852:intron | 35.0% | |
| TCCATTGAAAAGCAATTCCA+AGG | + | chr5.3:71983620-71983639 | MS.gene70852:CDS | 35.0% | |
| TCTATTGTCAACAATGTGGA+AGG | + | chr5.3:71982687-71982706 | MS.gene70852:CDS | 35.0% | |
| TTTATTGATAAGTGGGCAAG+TGG | + | chr5.3:71984913-71984932 | MS.gene70852:intron | 35.0% | |
| ! | AATGTGTAGGAGTGCAATAT+TGG | + | chr5.3:71984350-71984369 | MS.gene70852:intron | 35.0% |
| ! | AATTCTTGTTTGCACAAGAG+AGG | + | chr5.3:71982434-71982453 | MS.gene70852:CDS | 35.0% |
| ! | ATCGAAATCAATGATGATGC+AGG | + | chr5.3:71982639-71982658 | MS.gene70852:CDS | 35.0% |
| ! | ATGCCTTTTGCTACATTTGT+AGG | + | chr5.3:71982981-71983000 | MS.gene70852:intron | 35.0% |
| ! | ATTCTTGTTTGCACAAGAGA+GGG | + | chr5.3:71982435-71982454 | MS.gene70852:CDS | 35.0% |
| ! | CAACATAATGATTGGTTGAG+TGG | + | chr5.3:71983356-71983375 | MS.gene70852:CDS | 35.0% |
| ! | CATTTTGTACAGCCTTACAT+TGG | - | chr5.3:71983142-71983161 | None:intergenic | 35.0% |
| ! | CTTTGCTACTTATCATGTGT+TGG | + | chr5.3:71983733-71983752 | MS.gene70852:CDS | 35.0% |
| ! | GCAAGTCCATTTTCTTTGTA+GGG | - | chr5.3:71982605-71982624 | None:intergenic | 35.0% |
| ! | GTAATGTTGATTGACCATGA+TGG | - | chr5.3:71983013-71983032 | None:intergenic | 35.0% |
| ! | TATTGTGTCTCCTTTGTTTG+TGG | + | chr5.3:71985060-71985079 | MS.gene70852:intron | 35.0% |
| ! | TGCAAGTCCATTTTCTTTGT+AGG | - | chr5.3:71982606-71982625 | None:intergenic | 35.0% |
| ! | TGGATGACGATTTTCATGTA+AGG | + | chr5.3:71982862-71982881 | MS.gene70852:intron | 35.0% |
| ! | TGTAATGGAAGAAATCGTGA+AGG | + | chr5.3:71985559-71985578 | MS.gene70852:CDS | 35.0% |
| ! | TGTTCGTTGTTTGAGTTTAG+AGG | + | chr5.3:71983839-71983858 | MS.gene70852:CDS | 35.0% |
| ! | TTGTGTGGCTTTTCAAATCA+TGG | + | chr5.3:71983072-71983091 | MS.gene70852:intron | 35.0% |
| !! | ACCTTGGAATTGCTTTTCAA+TGG | - | chr5.3:71983624-71983643 | None:intergenic | 35.0% |
| !! | ATCGTGAAGGTTCTAAAATC+AGG | + | chr5.3:71985572-71985591 | MS.gene70852:CDS | 35.0% |
| !!! | CAATTTTTTGTCTTAGGTGG+GGG | - | chr5.3:71982498-71982517 | None:intergenic | 35.0% |
| !!! | GCAGGACAATTTTTTGTCTT+AGG | - | chr5.3:71982504-71982523 | None:intergenic | 35.0% |
| !!! | GGACAATTTTTTGTCTTAGG+TGG | - | chr5.3:71982501-71982520 | None:intergenic | 35.0% |
| !!! | TGAAGCGGATTTTAATTCAC+TGG | + | chr5.3:71983568-71983587 | MS.gene70852:CDS | 35.0% |
| AAGACACAGAGTCATTTGTG+TGG | + | chr5.3:71983057-71983076 | MS.gene70852:intron | 40.0% | |
| AGCATGCATGCTTTCTTTGA+TGG | + | chr5.3:71983464-71983483 | MS.gene70852:CDS | 40.0% | |
| AGTTGCATCTTCAGATTCTG+CGG | - | chr5.3:71984068-71984087 | None:intergenic | 40.0% | |
| AGTTGGAAAAGGATGGTTTG+TGG | + | chr5.3:71982538-71982557 | MS.gene70852:CDS | 40.0% | |
| ATCTATGTAGTTGGAAGGAG+AGG | + | chr5.3:71985487-71985506 | MS.gene70852:intron | 40.0% | |
| CAGATAACACATGACAACAC+AGG | - | chr5.3:71983868-71983887 | None:intergenic | 40.0% | |
| CCGATCTATTGTCAACAATG+TGG | + | chr5.3:71982683-71982702 | MS.gene70852:CDS | 40.0% | |
| CGGGTTAAATGTGAAGATCA+AGG | + | chr5.3:71984211-71984230 | MS.gene70852:CDS | 40.0% | |
| GCAAACAAGAATTGCATAGC+AGG | - | chr5.3:71982427-71982446 | None:intergenic | 40.0% | |
| GCATGCATGCTTTCTTTGAT+GGG | + | chr5.3:71983465-71983484 | MS.gene70852:CDS | 40.0% | |
| GCTTCATTGTATGCTTGGAA+AGG | + | chr5.3:71983094-71983113 | MS.gene70852:intron | 40.0% | |
| GGAAATGAAAATCGTGGTCA+CGG | + | chr5.3:71984818-71984837 | MS.gene70852:intron | 40.0% | |
| TAAAAGGATCAAGTCTGCGA+TGG | + | chr5.3:71983256-71983275 | MS.gene70852:CDS | 40.0% | |
| TACTTATCATGTGTTGGAGG+AGG | + | chr5.3:71983739-71983758 | MS.gene70852:CDS | 40.0% | |
| TATCATCTCCATTTCCTGCA+TGG | - | chr5.3:71985275-71985294 | None:intergenic | 40.0% | |
| TATGCCATAAACACCACCTA+TGG | - | chr5.3:71983193-71983212 | None:intergenic | 40.0% | |
| TCAAATCCAAACAATGGTGC+TGG | + | chr5.3:71984172-71984191 | MS.gene70852:CDS | 40.0% | |
| TCATCTATTGAGGTTGTCAG+TGG | + | chr5.3:71984413-71984432 | MS.gene70852:CDS | 40.0% | |
| TCATGGCTTCATTGTATGCT+TGG | + | chr5.3:71983089-71983108 | MS.gene70852:intron | 40.0% | |
| TCTTCACATTTAACCCGCAA+TGG | - | chr5.3:71984208-71984227 | None:intergenic | 40.0% | |
| TGAATTCCAGCACCATTGTT+TGG | - | chr5.3:71984181-71984200 | None:intergenic | 40.0% | |
| TGTAGGGAAGACTAACTCAA+TGG | - | chr5.3:71983165-71983184 | None:intergenic | 40.0% | |
| TGTGTTGTGTTACAGATCTG+AGG | + | chr5.3:71984539-71984558 | MS.gene70852:intron | 40.0% | |
| TTTGTAGGTGTGAACCATCA+TGG | + | chr5.3:71982996-71983015 | MS.gene70852:intron | 40.0% | |
| ! | ATGGGACGAAGTTGTTTCAA+AGG | + | chr5.3:71984797-71984816 | MS.gene70852:intron | 40.0% |
| ! | CTGATGATGATGAAGCATGT+TGG | + | chr5.3:71982277-71982296 | MS.gene70852:CDS | 40.0% |
| ! | CTGTATTCGTTGAGCTTTTC+AGG | - | chr5.3:71983230-71983249 | None:intergenic | 40.0% |
| ! | GTAGGAGTGCAATATTGGAA+TGG | + | chr5.3:71984355-71984374 | MS.gene70852:intron | 40.0% |
| ! | TGCTACTTATCATGTGTTGG+AGG | + | chr5.3:71983736-71983755 | MS.gene70852:CDS | 40.0% |
| ! | TTCTTGTTTGCACAAGAGAG+GGG | + | chr5.3:71982436-71982455 | MS.gene70852:CDS | 40.0% |
| !! | CTTGGACTAACTGGTCTTAA+AGG | + | chr5.3:71985324-71985343 | MS.gene70852:CDS | 40.0% |
| !! | CTTTGAAAAAGGGTTTTCGG+TGG | + | chr5.3:71982364-71982383 | MS.gene70852:CDS | 40.0% |
| !! | GTATGAAGAGCGTCATAGAT+GGG | + | chr5.3:71983382-71983401 | MS.gene70852:CDS | 40.0% |
| !! | TGTATGAAGAGCGTCATAGA+TGG | + | chr5.3:71983381-71983400 | MS.gene70852:CDS | 40.0% |
| AAAATCGTGGTCACGGAGAA+AGG | + | chr5.3:71984825-71984844 | MS.gene70852:intron | 45.0% | |
| AATTGAAGCCACAGATGGAC+AGG | + | chr5.3:71983999-71984018 | MS.gene70852:CDS | 45.0% | |
| ATCTGTGTGTTCACGAGAGA+GGG | + | chr5.3:71983883-71983902 | MS.gene70852:CDS | 45.0% | |
| CAAGCGAAGTAATGACAGAC+AGG | + | chr5.3:71984242-71984261 | MS.gene70852:intron | 45.0% | |
| CTGGAATTCACAGTCCATTG+CGG | + | chr5.3:71984191-71984210 | MS.gene70852:CDS | 45.0% | |
| CTGTCTGTCATTACTTCGCT+TGG | - | chr5.3:71984244-71984263 | None:intergenic | 45.0% | |
| GACCAGCCCTACAAAGAAAA+TGG | + | chr5.3:71982596-71982615 | MS.gene70852:CDS | 45.0% | |
| GAGAGAATTGAAGCCACAGA+TGG | + | chr5.3:71983994-71984013 | MS.gene70852:CDS | 45.0% | |
| TATCTGTGTGTTCACGAGAG+AGG | + | chr5.3:71983882-71983901 | MS.gene70852:CDS | 45.0% | |
| TCGCGCTATTCACTTATACG+TGG | + | chr5.3:71985517-71985536 | MS.gene70852:CDS | 45.0% | |
| TCTATTGAGGTTGTCAGTGG+TGG | + | chr5.3:71984416-71984435 | MS.gene70852:CDS | 45.0% | |
| TGGAATTCACAGTCCATTGC+GGG | + | chr5.3:71984192-71984211 | MS.gene70852:CDS | 45.0% | |
| TTGTCAAACCTGTCCATCTG+TGG | - | chr5.3:71984010-71984029 | None:intergenic | 45.0% | |
| ! | GGCCGGTGTTTATTTCCTTT+TGG | + | chr5.3:71984846-71984865 | MS.gene70852:intron | 45.0% |
| ! | GTCCATTTTCTTTGTAGGGC+TGG | - | chr5.3:71982601-71982620 | None:intergenic | 45.0% |
| ! | TCAATGATGATGCAGGAGTG+AGG | + | chr5.3:71982646-71982665 | MS.gene70852:CDS | 45.0% |
| ! | TGGAAAAGAAGGTGATGGCA+AGG | + | chr5.3:71982776-71982795 | MS.gene70852:intron | 45.0% |
| !! | CGAGGGAGCACAATTCATTT+TGG | - | chr5.3:71983693-71983712 | None:intergenic | 45.0% |
| ACCACCTATGGCGTGTTGTA+GGG | - | chr5.3:71983181-71983200 | None:intergenic | 50.0% | |
| ACCCTCGACAACATTCAACG+AGG | - | chr5.3:71983711-71983730 | None:intergenic | 50.0% | |
| AGCATGTTGGAAGCCTGCAA+CGG | + | chr5.3:71982290-71982309 | MS.gene70852:CDS | 50.0% | |
| AGGATCAAGTCTGCGATGGA+AGG | + | chr5.3:71983260-71983279 | MS.gene70852:CDS | 50.0% | |
| ATTGAGGTTGTCAGTGGTGG+TGG | + | chr5.3:71984419-71984438 | MS.gene70852:CDS | 50.0% | |
| CACGCCATAGGTGGTGTTTA+TGG | + | chr5.3:71983186-71983205 | MS.gene70852:CDS | 50.0% | |
| CCCTCGACAACATTCAACGA+GGG | - | chr5.3:71983710-71983729 | None:intergenic | 50.0% | |
| CCCTCGTTGAATGTTGTCGA+GGG | + | chr5.3:71983707-71983726 | MS.gene70852:CDS | 50.0% | |
| CTACGTCTTCGACTGCAAAG+TGG | - | chr5.3:71985012-71985031 | None:intergenic | 50.0% | |
| GGTCTGTCACAATACCCACA+GGG | - | chr5.3:71983121-71983140 | None:intergenic | 50.0% | |
| GTCTGTCACAATACCCACAG+GGG | - | chr5.3:71983120-71983139 | None:intergenic | 50.0% | |
| GTGTTGGAGGAGGTTGTAGT+TGG | + | chr5.3:71983749-71983768 | MS.gene70852:CDS | 50.0% | |
| TCCATTTCCTGCATGGACCA+TGG | - | chr5.3:71985268-71985287 | None:intergenic | 50.0% | |
| TCCCTCGTTGAATGTTGTCG+AGG | + | chr5.3:71983706-71983725 | MS.gene70852:CDS | 50.0% | |
| TCTTCCCTACAACACGCCAT+AGG | + | chr5.3:71983174-71983193 | MS.gene70852:CDS | 50.0% | |
| TCTTCTTTCAAGGCGTGCAG+TGG | + | chr5.3:71985350-71985369 | MS.gene70852:CDS | 50.0% | |
| TGGCATGAGTGTACTCACCT+TGG | - | chr5.3:71983640-71983659 | None:intergenic | 50.0% | |
| TGGTCTGTCACAATACCCAC+AGG | - | chr5.3:71983122-71983141 | None:intergenic | 50.0% | |
| TTGGAGGAGGTTGTAGTTGG+AGG | + | chr5.3:71983752-71983771 | MS.gene70852:CDS | 50.0% | |
| !! | GGGGGTGTCTTTAACGTACA+CGG | - | chr5.3:71982480-71982499 | None:intergenic | 50.0% |
| !! | TGTCAGTGGTGGTGGTTTGT+TGG | + | chr5.3:71984427-71984446 | MS.gene70852:intron | 50.0% |
| ATGCTTGGAAAGGCCCCTGT+GGG | + | chr5.3:71983104-71983123 | MS.gene70852:intron | 55.0% | |
| CACCACCTATGGCGTGTTGT+AGG | - | chr5.3:71983182-71983201 | None:intergenic | 55.0% | |
| CATGTTGGAAGCCTGCAACG+GGG | + | chr5.3:71982292-71982311 | MS.gene70852:CDS | 55.0% | |
| GAAAAACGCATCCCCGTTGC+AGG | - | chr5.3:71982306-71982325 | None:intergenic | 55.0% | |
| GCACAAGAGAGGGGTCTCAA+GGG | + | chr5.3:71982445-71982464 | MS.gene70852:CDS | 55.0% | |
| GCATGTTGGAAGCCTGCAAC+GGG | + | chr5.3:71982291-71982310 | MS.gene70852:CDS | 55.0% | |
| GCCATGGTCCATGCAGGAAA+TGG | + | chr5.3:71985264-71985283 | MS.gene70852:intron | 55.0% | |
| TATGCTTGGAAAGGCCCCTG+TGG | + | chr5.3:71983103-71983122 | MS.gene70852:intron | 55.0% | |
| TCCCTACAACACGCCATAGG+TGG | + | chr5.3:71983177-71983196 | MS.gene70852:CDS | 55.0% | |
| TCCTGCATGGACCATGGCTA+AGG | - | chr5.3:71985262-71985281 | None:intergenic | 55.0% | |
| TGCACAAGAGAGGGGTCTCA+AGG | + | chr5.3:71982444-71982463 | MS.gene70852:CDS | 55.0% | |
| !! | GTCTCTTGGTGCCTTAGCCA+TGG | + | chr5.3:71985248-71985267 | MS.gene70852:intron | 55.0% |
| CATGCTCTCACTTCGCTGCG+TGG | - | chr5.3:71983450-71983469 | None:intergenic | 60.0% | |
| GCCTTAGCCATGGTCCATGC+AGG | + | chr5.3:71985258-71985277 | MS.gene70852:intron | 60.0% | |
| TCGTGGTCACGGAGAAAGGC+CGG | + | chr5.3:71984829-71984848 | MS.gene70852:intron | 60.0% | |
| ! | CTTGGATGTGGGCTGCTCTC+AGG | + | chr5.3:71983032-71983051 | MS.gene70852:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 71982210 | 71985607 | 71982210 | ID=MS.gene70852 |
| chr5.3 | mRNA | 71982210 | 71985607 | 71982210 | ID=MS.gene70852.t1;Parent=MS.gene70852 |
| chr5.3 | exon | 71982210 | 71982786 | 71982210 | ID=MS.gene70852.t1.exon1;Parent=MS.gene70852.t1 |
| chr5.3 | CDS | 71982210 | 71982786 | 71982210 | ID=cds.MS.gene70852.t1;Parent=MS.gene70852.t1 |
| chr5.3 | exon | 71983138 | 71984249 | 71983138 | ID=MS.gene70852.t1.exon2;Parent=MS.gene70852.t1 |
| chr5.3 | CDS | 71983138 | 71984249 | 71983138 | ID=cds.MS.gene70852.t1;Parent=MS.gene70852.t1 |
| chr5.3 | exon | 71984359 | 71984440 | 71984359 | ID=MS.gene70852.t1.exon3;Parent=MS.gene70852.t1 |
| chr5.3 | CDS | 71984359 | 71984440 | 71984359 | ID=cds.MS.gene70852.t1;Parent=MS.gene70852.t1 |
| chr5.3 | exon | 71985280 | 71985371 | 71985280 | ID=MS.gene70852.t1.exon4;Parent=MS.gene70852.t1 |
| chr5.3 | CDS | 71985280 | 71985371 | 71985280 | ID=cds.MS.gene70852.t1;Parent=MS.gene70852.t1 |
| chr5.3 | exon | 71985497 | 71985607 | 71985497 | ID=MS.gene70852.t1.exon5;Parent=MS.gene70852.t1 |
| chr5.3 | CDS | 71985497 | 71985607 | 71985497 | ID=cds.MS.gene70852.t1;Parent=MS.gene70852.t1 |
| Gene Sequence |
| Protein sequence |
