AlfalfaGEDB | MS.gene72642

M. sativa cultivar XinJiangDaYe / MS.gene72642

KEGG: K15718
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0016702 GO:0043167 GO:0043169 GO:0046872 GO:0051213 GO:0055114
PFAM: PF00305.22 PF01477.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72642.t1	XP_003612345.1	97.4	755	20	0	1	755	1	755	0.00E+00	1523.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72642.t1	P24095	74.2	757	188	4	1	755	1	752	0.0e+00	1174.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72642.t1	G7K036	97.4	755	20	0	1	755	1	755	0.0e+00	1523.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene72642	-0.808841	2.54E-50	-1.69E-46
MS.gene049222	MS.gene72642	-0.806471	8.10E-50	-1.69E-46
MS.gene049285	MS.gene72642	-0.80404	2.61E-49	-1.69E-46
MS.gene049320	MS.gene72642	-0.813472	2.52E-51	-1.69E-46
MS.gene049633	MS.gene72642	-0.806245	9.03E-50	-1.69E-46
MS.gene049634	MS.gene72642	0.821791	3.35E-53	-1.69E-46
MS.gene050163	MS.gene72642	-0.824166	9.35E-54	-1.69E-46
MS.gene050165	MS.gene72642	-0.830756	2.46E-55	-1.69E-46
MS.gene050333	MS.gene72642	-0.821657	3.59E-53	-1.69E-46
MS.gene050444	MS.gene72642	-0.814916	1.21E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene72642.t1	MTR_5g024020	98.543	755	11	0	1	755	1	755	1544
MS.gene72642.t1	MTR_5g024020	93.907	755	10	1	1	755	1	719	1458
MS.gene72642.t1	MTR_8g018730	83.046	755	125	2	1	755	1	752	1325
MS.gene72642.t1	MTR_8g018735	83.841	755	120	2	1	755	1	753	1322
MS.gene72642.t1	MTR_8g018730	79.338	755	123	3	1	755	1	722	1254
MS.gene72642.t1	MTR_2g099560	71.656	755	202	7	3	755	7	751	1136
MS.gene72642.t1	MTR_2g099570	69.272	755	218	6	3	755	7	749	1080
MS.gene72642.t1	MTR_8g018420	68.365	746	223	5	12	755	9	743	1076
MS.gene72642.t1	MTR_3g081130	67.721	759	228	9	1	755	1	746	1060
MS.gene72642.t1	MTR_8g018735	82.334	617	107	2	1	617	1	615	1049

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene72642.t1	AT1G55020	56.447	760	287	12	10	755	18	747	857
MS.gene72642.t1	AT3G22400	53.796	764	309	12	10	755	32	769	821
MS.gene72642.t1	AT1G17420	46.110	707	359	12	57	752	108	803	621
MS.gene72642.t1	AT1G72520	45.827	707	362	11	57	752	114	810	619
MS.gene72642.t1	AT3G45140	45.068	730	360	20	30	745	70	772	588
MS.gene72642.t1	AT3G45140	48.442	642	302	16	118	745	4	630	579
MS.gene72642.t1	AT1G67560	44.930	710	352	15	64	753	111	801	566

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Find 176 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAACTCTATGGCCAC+TGG	0.582518	5.4:-15443676	None:intergenic
AAATTGTACTATCAACACCT+TGG	0.644668	5.4:-15443756	None:intergenic
AACTCCAAATTATGATGAGA+TGG	0.555053	5.4:+15444832	MS.gene72642:CDS
AAGAAGACCACCTTGTTTGA+CGG	0.441487	5.4:-15439625	None:intergenic
AAGATTACAGATTTAAACAA+AGG	0.575473	5.4:-15442460	None:intergenic
AAGCTTGCTCGTCCAGTCCT+TGG	0.441085	5.4:+15442143	MS.gene72642:CDS
AAGGTGTTGATAGTACAATT+TGG	0.435084	5.4:+15443758	MS.gene72642:CDS
AATACAAGGAGACATAGTCT+TGG	0.597621	5.4:-15444550	None:intergenic
AATCATGTTCCATTATCATA+TGG	0.452609	5.4:+15444705	MS.gene72642:CDS
AATCTAAGAGGAGATGGTAC+TGG	0.504050	5.4:+15442047	MS.gene72642:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTTACCCTAAGGGTTA+GGG	-	chr5.4:15442808-15442827	None:intergenic	30.0%
AAACTTATTACTCACTCTGT+TGG	-	chr5.4:15443956-15443975	None:intergenic	30.0%
AAATTGTACTATCAACACCT+TGG	-	chr5.4:15443759-15443778	None:intergenic	30.0%
AACTCCAAATTATGATGAGA+TGG	+	chr5.4:15444832-15444851	MS.gene72642:CDS	30.0%
AATGATTATGGAGGATGAAT+TGG	+	chr5.4:15440906-15440925	MS.gene72642:intron	30.0%
AATGCTCTAATTAATGCTGA+TGG	+	chr5.4:15444147-15444166	MS.gene72642:CDS	30.0%
AGAACTTCAATTAATGAGGT+CGG	+	chr5.4:15440268-15440287	MS.gene72642:intron	30.0%
AGTGGTAGATTTAGTTAGTA+GGG	-	chr5.4:15443853-15443872	None:intergenic	30.0%
ATGACACTGAATTACAAACT+TGG	+	chr5.4:15444597-15444616	MS.gene72642:CDS	30.0%
ATGATTATGGAGGATGAATT+GGG	+	chr5.4:15440907-15440926	MS.gene72642:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	15439531	15445091	15439531	ID=MS.gene72642
chr5.4	mRNA	15439531	15445091	15439531	ID=MS.gene72642.t1;Parent=MS.gene72642
chr5.4	exon	15439531	15439768	15439531	ID=MS.gene72642.t1.exon1;Parent=MS.gene72642.t1
chr5.4	CDS	15439531	15439768	15439531	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1
chr5.4	exon	15441548	15441837	15441548	ID=MS.gene72642.t1.exon2;Parent=MS.gene72642.t1
chr5.4	CDS	15441548	15441837	15441548	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1
chr5.4	exon	15441987	15442227	15441987	ID=MS.gene72642.t1.exon3;Parent=MS.gene72642.t1
chr5.4	CDS	15441987	15442227	15441987	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1
chr5.4	exon	15442344	15442664	15442344	ID=MS.gene72642.t1.exon4;Parent=MS.gene72642.t1
chr5.4	CDS	15442344	15442664	15442344	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1
chr5.4	exon	15442960	15443045	15442960	ID=MS.gene72642.t1.exon5;Parent=MS.gene72642.t1
chr5.4	CDS	15442960	15443045	15442960	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1
chr5.4	exon	15443321	15443428	15443321	ID=MS.gene72642.t1.exon6;Parent=MS.gene72642.t1
chr5.4	CDS	15443321	15443428	15443321	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1
chr5.4	exon	15443541	15443842	15443541	ID=MS.gene72642.t1.exon7;Parent=MS.gene72642.t1
chr5.4	CDS	15443541	15443842	15443541	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1
chr5.4	exon	15444017	15444280	15444017	ID=MS.gene72642.t1.exon8;Parent=MS.gene72642.t1
chr5.4	CDS	15444017	15444280	15444017	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1
chr5.4	exon	15444439	15444853	15444439	ID=MS.gene72642.t1.exon9;Parent=MS.gene72642.t1
chr5.4	CDS	15444439	15444853	15444439	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1
chr5.4	exon	15444972	15445091	15444972	ID=MS.gene72642.t1.exon10;Parent=MS.gene72642.t1
chr5.4	CDS	15444972	15445091	15444972	ID=cds.MS.gene72642.t1;Parent=MS.gene72642.t1

Gene Sequence

>MS.gene72642

ATGTTTGGCATATTTGATAGGGATCATAGCCAAAAGATCAAGGGCACTGTGGTGTTGATGCCCAAAAATGTTTTGGACTTCAACGCTGTAACGTCCGTCAAACAAGGTGGTCTTCTTGATGCTGCCGGGAACATTCTTGATGCTGCCGGCAGCTTGGTCGGCGGGATAATTGACGGTGCTACTGCCTTCTTAGGTCGGAACGTATCTATGCGGTTGATCAGTGCTACCAAGACAGATGGTTTGTCATCTCTACCTAGTTATTTACGTTTATTCAACTCATTCTTTCCATATATATTTCAAAAGAGACAAATATTTTATGCTTTTGGAATTTTCACAAAATTATTAGTATGCAAGACAACTCACCACATTTTTATATTAAATATTAAGTGTGATCAATAATAGATTGATCCAAGTAGTAAGAAATTTGGAACTTTTAAGTAAGTGGTTGGGGAGTCGATCTCTAACTTTTAAGTATGGAGAAATTTCGATTGAGAGAAGAGAACCACTCTTGTGTGCTCAACAAATTTTTTCACGGTGATTAGTTAACGTTAAAAGACAGAGAAAACTTTGTAATTATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAAGTCCATGATGCTACAATATATAGTATACATATAAATAATTTTTTAGAACTTCAATTAATGAGGTCGGATCGTTGAAGAATAACTGAAGATTGAATCTTAACGGATACAATCTTTATTCAAATTTTACGTACCTTTTAATTAAACTTTAAATCATTAAAGTCTCTTTCTTTAGAAACTAGAGGTTTGAAGATCCAAAAAATATAATAATTTTTTAGTAAATTAATGGTGACGCACAATGGTATAAGTTATATAGTAAACAAGAATTTTGTGTTGTTCCCTATTGGAAAAAAAAAATTGTGTTGTTAGTAAGGTCTAGCCAACTCAACTAATAATATTGACAGCGTTAGATTAAACACTTTCGTCTGAATTTCAATCTAAAACTCACAATGATATATGTAAGTTTTAGGTCGTGTTTACCATCCATTCTTAAAAAAAATAGGTGTCTTGTGTTTGATATTCACTCTAATAATAATTTGATAGAAACTAGTGGCCGATACATGTGTGACCTGCTTGAATTTGTTTATTCAACTAATGAATATTTACACAAGTGGTCCTTGTTTATTCTAAAGTAATCCTTTTTTAAACGGTCATTCATAGAATGAGTCAAAAAATGATTATTCACACGAACCCCTTTTTTAATGTTTAGGGTTTTGAATATTATATATACTAGTGACTCTTTCTTAATGATTATGGAGGATGAATTGGGTGACTTTACTATTTGATAATTTTGGTGATTTTAGCGTATCTAAATGATAAATGAATATTAAAATAAGAGTTTTTCTATCCAATGTAATATTTGGATAGTTTAGGATAGCTAAAAATTATAGTTTTGTTATTGAAAAAAACAATTATTTATTACTTCATGCGTTTCTAAATATATGTCGTACTTAACAACTTCAATAGACAATTTTGACCATTATTATTTTAATTATCTATCATAAAAAATTATAAAAAAAAATATATTTTGAAAATATTTATTGAAACAAATCAAACAACATCTTACATGTTAACATTTGTATTATATATTAGTTAAACAATATATTCAAAGTAAGTTATATGAATAGTATAAAACTGCGATATGTATTTAGAAACGGACGGAATACAAAATTATATATTTAATATATATAAAGTGTAAAGTTTTATTGACTTCTTATGCTATGCAAATTTACACATAATTAAATGAGAAAGAATGATTGATTGAAAGAGATAAAGATAAAGTTACCAAAGTTTTAAATGTAGTCTATTTTGATCATGATTATGACTAATATTTGATCACGAATAAATAGCATTTTCCTTTATTTGTTGGAATATGTTATTTTTGTAGCAAATGGCAAGGGATTAGTTGGAAAAGAAGTATTTTTGGAGAAACATGTCCCCACTCTACCAACCTTGGGAGCAAGACAAGATGCATTTACCATTCACTTTGATTGGGATGCTGATTTTGGAATTCCAGGAGCATTTTACATAAGGAACTACATGCAAGCTCATGAGTTCTTTCTTGTTAGTGTCACTTTTGATGACATTCCTAATCGTGAATCCGTTGAATTTGTTTGCAATTCATGGATTTACAATTTCAAAAACTACAAAAAGGATCGCATCTTCTTTACCAATGATGTAAGCTCCAAATCCTTAATTAAAAAAGTTAACTATGTTTACGATTTCTAAAAAATTGACAAAAATTGTTCCATTTTAATTTTTGGCTCTATAATTTTTTATGCATTTTTAGCTCCTAAAATATTAAATATTAATTGAATTTGTTATAGACATATCTTCCAAGTCAAACACCAGCTCCATTAGTCTTCTACAGACAAGAAGAATTGCAAAATCTAAGAGGAGATGGTACTGGACAACGAAAAGAATGGGAAAGAGTTTATGATTATGATGTCTACAATGATCTTGGTGATCCAGATGAAGATGTCAAGCTTGCTCGTCCAGTCCTTGGAGGGTCTAACACTCATCCTTACCCTCGAAGGGTTAGAAGTGGTCGAAAACCAACTAAAAAGGGTAATTTTTTTTTATTTTCATATACTTTAAAGACTAAATATGAGAGTCAATAATGTGGTTCTAATGTTGTCTTATTTTTTTATTTCTTATTCTAATGATATTTTTATTGTTGACAGATCCTAAAAGTGAGAGACCAGGTGTGATGTATGTTCCAAGAGATGAAAACTTTGAACACTTGAAGTCATCTGACTTCCTTACATATGGAATAAAATCATTGTCTCAAGATGTGTTACCTTTGTTTAAATCTGTAATCTTTGATTTGAATTTCACTCCAAATGAGTTTGATAGCTTCGATGAAGTGCGTGACCTATTTGAAGGTGGTATTGAACTTCCTACACACATATTGAGCAAAATCAGTCCCTTACCAGTCCTTAAGGAAATTTTCCGCACTGATGGTGAACAAGTCCTCAAGTTTCCACCACCACATGTAATCAGAGGTACATTATTATTCATCCTTATTCAATCATATGCCTCTATAAATATAGGGTCATGCTAACATATGCCCTAAAAGCACATGTTAAAAACAATTGGCATATTTTCCAATGTAATATTTATATCTTTGATACTTTAACATTTGCCCTAACCCTTAGGGTAAATTTTACCATTTCTCATAAATATATATTCTAAATTAAAGTCACATTACCTATGTTAGCATTATACTAGTAGCGATAAAAGAAACATGTGCATTTATTGAATTAGTCCAATTTAATATATATTTCTTATTTTTTATAGTTAGCAAATCTGCATGGATGACTGACGAAGAATTTGGAAGAGAGATGGTTGCTGGTGTAAACCCTTGTGTGATTCGCCTTCTACAAGTAAGTTTCAAATGTATTTTTTATCATCAAAAGTCATAGATATTATTTACAATTTTTTTTTGGTACATTCAATTTGTTTATTTTATAACCACTAATATATTTTTTTATCTATCATATCTATATCCATGAGGGTAAGAGTTTGATCTTTTAGTCTTTTAGAGATATTGGAATTGGTTGTAAAATGACCAATGCTGCCAATTTAATGAATAATGCTCCACATTCCACAATTTAATATTTTTAACTCATATCATTGTATTAAATTATTTGTTTGGCAGGAGTTCCCACCGAAAAGCACGTTAGATATTGCTGTCTATGGTGATCAAACTAGTATACTAAAAAAAGAGCAGCTGGAGATTAATCTAGGTGGGCTCACAGTAGAAAAGGTAATGATATAAATAGTATAAAATATGTTTCACATAAAAGTCATTATTAATTGGCTTATAAATTATTTAAATTTATGAAAACTAAGTGATTGAAATTATACTTATGGAACAGGCACTTAATGGTCAAAGATTATTCATCTTAGATTATCATGATGCATTCATGCCATTTTTGGAGAAGATAAACAAAAATGCCAAAGCTTATGCCACTAGGACAATCCTTTTCTTAAAAGATGATGGAACTTTGAAACCAGTGGCCATAGAGTTGAGTTTACCACATCCAAATGGTGTTAAGTATGGTGCTGAAAGCAAAATCATCTTGCCTGCCGACCAAGGTGTTGATAGTACAATTTGGCTATTGGCCAAGGCTCATGTAATTGTAAATGACTCATGCTACCATCAACTCATGAGCCACTGGTATGGCCCCTACTAACTAAATCTACCACTCACTCTCTCTCTTTTTTTTTCTTTTCAATTTGTAGTTTTTTCTTAATCCGTGTGAAATGACCTAATATGACGGTTTTTGTCCAACAGAGTGAGTAATAAGTTTAGTATAAGCAATGTATAATACTTTTTTTCAATGTGTACTAGGTTGAATACTCATGCAGTGGTTGAGCCATTCATCATAGCAACAAACAGACATCTTAGTGTGCTTCACCCTATTAACAAGTTGCTAGATCCCCATTTCCGTGACACAATAAATATCAACGGACTTGCTCGAAATGCTCTAATTAATGCTGATGGAATCATAGAGGAAACATTTTTACCTGGGCCGAATTCTGTTGAGATGTCATCAGCAGCATACAAGAACTGGGTTTTCACTGATCAAGCATTACCAGCTGATCTTATCAAGAGGTAATTTGCCACCATCTAATTTGGATGCATATTTCAATTATGCTAGTGTTGTAAATAAATTTTTCTCTACCAATCTAGCGGCCAATTTAAAAAATTGGTCGCTAAATTGATAACAAATTGTTAACTTTTATTGATAAGAAATTGTTTGCTTGATATAGAGGATTAGCAGTTGAGGATCCATCGTCTCCACATGGCCTTCGTCTTGTGATCGAGGACTACCCTTATGCAGTTGACGGACTAGAGATATGGGATGCTATTAAGTCATGGGTCCAAGACTATGTCTCCTTGTATTATCCAACTGATGAGGCAGTACAAAATGACACTGAATTACAAACTTGGTGGAAGGAAGTTGTAGAAAAAGGTCACGGTGACTTGAAAGACAAACCATGGTGGCCTAAGATGCAGAATATTCAAGATTTAATCCAATCATGTTCCATTATCATATGGACTGCTTCTGCTCTTCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGTTATATTCTGAACCGTCCGACACTTAGTCGAAGATGGATCCCGGAGAAAGGAACTCCAAATTATGATGAGATGGTGAAAAACCCTCAAAAAGCATATTTGAGAACAATTACACCAAAATATCAAACCCTTATTGATCTTTCTGTGATTGAGATATTGTCAAGACATGCTTCTGATGAAATCTACCTTGGAGAGAGGGATGTTAAGTTTTGGACATCTGATTCAAGAGCATTACAAGCCTTTCAAAAGTTTGGAAGTAAGCTGGCCAAAATTGAAGGAAAAATCACAGAAAGAAACAATGATTCCGATCTGA

Protein sequence

>MS.gene72642.t1

MFGIFDRDHSQKIKGTVVLMPKNVLDFNAVTSVKQGGLLDAAGNILDAAGSLVGGIIDGATAFLGRNVSMRLISATKTDANGKGLVGKEVFLEKHVPTLPTLGARQDAFTIHFDWDADFGIPGAFYIRNYMQAHEFFLVSVTFDDIPNRESVEFVCNSWIYNFKNYKKDRIFFTNDTYLPSQTPAPLVFYRQEELQNLRGDGTGQRKEWERVYDYDVYNDLGDPDEDVKLARPVLGGSNTHPYPRRVRSGRKPTKKDPKSERPGVMYVPRDENFEHLKSSDFLTYGIKSLSQDVLPLFKSVIFDLNFTPNEFDSFDEVRDLFEGGIELPTHILSKISPLPVLKEIFRTDGEQVLKFPPPHVIRVSKSAWMTDEEFGREMVAGVNPCVIRLLQEFPPKSTLDIAVYGDQTSILKKEQLEINLGGLTVEKALNGQRLFILDYHDAFMPFLEKINKNAKAYATRTILFLKDDGTLKPVAIELSLPHPNGVKYGAESKIILPADQGVDSTIWLLAKAHVIVNDSCYHQLMSHWLNTHAVVEPFIIATNRHLSVLHPINKLLDPHFRDTININGLARNALINADGIIEETFLPGPNSVEMSSAAYKNWVFTDQALPADLIKRGLAVEDPSSPHGLRLVIEDYPYAVDGLEIWDAIKSWVQDYVSLYYPTDEAVQNDTELQTWWKEVVEKGHGDLKDKPWWPKMQNIQDLIQSCSIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRWIPEKGTPNYDEMRGMLSFGHLIQEHYKPFKSLEVSWPKLKEKSQKETMIPI