Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73877.t1 | XP_013447063.1 | 93.7 | 239 | 15 | 0 | 1 | 239 | 358 | 596 | 2.80E-130 | 474.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73877.t1 | Q9LDD4 | 49.3 | 207 | 98 | 3 | 34 | 238 | 372 | 573 | 4.0e-53 | 209.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73877.t1 | A0A072U5F3 | 93.7 | 239 | 15 | 0 | 1 | 239 | 358 | 596 | 2.0e-130 | 474.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049230 | MS.gene73877 | 0.809208 | 2.12E-50 | -1.69E-46 |
MS.gene049378 | MS.gene73877 | 0.800379 | 1.48E-48 | -1.69E-46 |
MS.gene049669 | MS.gene73877 | 0.801883 | 7.30E-49 | -1.69E-46 |
MS.gene049825 | MS.gene73877 | 0.811445 | 6.98E-51 | -1.69E-46 |
MS.gene049873 | MS.gene73877 | 0.816182 | 6.31E-52 | -1.69E-46 |
MS.gene050226 | MS.gene73877 | 0.801122 | 1.05E-48 | -1.69E-46 |
MS.gene050227 | MS.gene73877 | 0.825624 | 4.24E-54 | -1.69E-46 |
MS.gene050228 | MS.gene73877 | 0.825294 | 5.07E-54 | -1.69E-46 |
MS.gene050277 | MS.gene73877 | 0.807602 | 4.67E-50 | -1.69E-46 |
MS.gene050303 | MS.gene73877 | 0.860695 | 1.73E-63 | -1.69E-46 |
MS.gene050330 | MS.gene73877 | -0.81743 | 3.31E-52 | -1.69E-46 |
MS.gene050442 | MS.gene73877 | 0.808833 | 2.55E-50 | -1.69E-46 |
MS.gene050623 | MS.gene73877 | -0.813541 | 2.43E-51 | -1.69E-46 |
MS.gene050642 | MS.gene73877 | 0.819018 | 1.45E-52 | -1.69E-46 |
MS.gene050719 | MS.gene73877 | 0.812008 | 5.26E-51 | -1.69E-46 |
MS.gene050721 | MS.gene73877 | 0.820042 | 8.46E-53 | -1.69E-46 |
MS.gene050750 | MS.gene73877 | 0.805682 | 1.19E-49 | -1.69E-46 |
MS.gene050953 | MS.gene73877 | 0.809081 | 2.26E-50 | -1.69E-46 |
MS.gene051349 | MS.gene73877 | 0.822138 | 2.78E-53 | -1.69E-46 |
MS.gene051633 | MS.gene73877 | 0.807323 | 5.35E-50 | -1.69E-46 |
MS.gene051678 | MS.gene73877 | 0.807512 | 4.87E-50 | -1.69E-46 |
MS.gene051983 | MS.gene73877 | 0.813276 | 2.78E-51 | -1.69E-46 |
MS.gene052012 | MS.gene73877 | 0.809263 | 2.06E-50 | -1.69E-46 |
MS.gene052176 | MS.gene73877 | 0.854274 | 1.37E-61 | -1.69E-46 |
MS.gene052302 | MS.gene73877 | 0.827363 | 1.63E-54 | -1.69E-46 |
MS.gene052309 | MS.gene73877 | -0.849747 | 2.65E-60 | -1.69E-46 |
MS.gene052358 | MS.gene73877 | -0.844431 | 7.59E-59 | -1.69E-46 |
MS.gene052376 | MS.gene73877 | 0.840494 | 8.41E-58 | -1.69E-46 |
MS.gene052926 | MS.gene73877 | 0.820956 | 5.22E-53 | -1.69E-46 |
MS.gene053080 | MS.gene73877 | 0.802182 | 6.33E-49 | -1.69E-46 |
MS.gene053216 | MS.gene73877 | 0.802245 | 6.15E-49 | -1.69E-46 |
MS.gene054657 | MS.gene73877 | 0.814735 | 1.32E-51 | -1.69E-46 |
MS.gene055818 | MS.gene73877 | 0.804761 | 1.85E-49 | -1.69E-46 |
MS.gene056087 | MS.gene73877 | 0.812235 | 4.69E-51 | -1.69E-46 |
MS.gene056091 | MS.gene73877 | 0.801673 | 8.06E-49 | -1.69E-46 |
MS.gene056506 | MS.gene73877 | 0.846 | 2.86E-59 | -1.69E-46 |
MS.gene056979 | MS.gene73877 | 0.807115 | 5.92E-50 | -1.69E-46 |
MS.gene057026 | MS.gene73877 | 0.818894 | 1.54E-52 | -1.69E-46 |
MS.gene057060 | MS.gene73877 | 0.832987 | 6.91E-56 | -1.69E-46 |
MS.gene057079 | MS.gene73877 | 0.852812 | 3.61E-61 | -1.69E-46 |
MS.gene057140 | MS.gene73877 | 0.812618 | 3.87E-51 | -1.69E-46 |
MS.gene057555 | MS.gene73877 | 0.818364 | 2.04E-52 | -1.69E-46 |
MS.gene05795 | MS.gene73877 | 0.833142 | 6.32E-56 | -1.69E-46 |
MS.gene058037 | MS.gene73877 | 0.806138 | 9.52E-50 | -1.69E-46 |
MS.gene058084 | MS.gene73877 | 0.800279 | 1.55E-48 | -1.69E-46 |
MS.gene058399 | MS.gene73877 | 0.802258 | 6.11E-49 | -1.69E-46 |
MS.gene059249 | MS.gene73877 | 0.825187 | 5.37E-54 | -1.69E-46 |
MS.gene059317 | MS.gene73877 | 0.837808 | 4.18E-57 | -1.69E-46 |
MS.gene05954 | MS.gene73877 | 0.833698 | 4.59E-56 | -1.69E-46 |
MS.gene059569 | MS.gene73877 | 0.826597 | 2.49E-54 | -1.69E-46 |
MS.gene05979 | MS.gene73877 | 0.81754 | 3.13E-52 | -1.69E-46 |
MS.gene059830 | MS.gene73877 | 0.820826 | 5.59E-53 | -1.69E-46 |
MS.gene060297 | MS.gene73877 | 0.802055 | 6.73E-49 | -1.69E-46 |
MS.gene060322 | MS.gene73877 | 0.822478 | 2.32E-53 | -1.69E-46 |
MS.gene060572 | MS.gene73877 | 0.847313 | 1.25E-59 | -1.69E-46 |
MS.gene060586 | MS.gene73877 | 0.831037 | 2.09E-55 | -1.69E-46 |
MS.gene060683 | MS.gene73877 | 0.80868 | 2.75E-50 | -1.69E-46 |
MS.gene060685 | MS.gene73877 | 0.805275 | 1.44E-49 | -1.69E-46 |
MS.gene060803 | MS.gene73877 | 0.804903 | 1.73E-49 | -1.69E-46 |
MS.gene060907 | MS.gene73877 | 0.801832 | 7.48E-49 | -1.69E-46 |
MS.gene061040 | MS.gene73877 | -0.854665 | 1.06E-61 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73877.t1 | MTR_8g098605 | 93.724 | 239 | 15 | 0 | 1 | 239 | 358 | 596 | 3.12e-166 | 472 |
MS.gene73877.t1 | MTR_8g098645 | 76.894 | 264 | 36 | 2 | 1 | 239 | 83 | 346 | 4.12e-148 | 417 |
MS.gene73877.t1 | MTR_1g073380 | 71.206 | 257 | 50 | 1 | 1 | 233 | 336 | 592 | 1.53e-126 | 370 |
MS.gene73877.t1 | MTR_1g073530 | 68.482 | 257 | 55 | 2 | 1 | 233 | 328 | 582 | 5.59e-121 | 356 |
MS.gene73877.t1 | MTR_1g073590 | 67.704 | 257 | 57 | 2 | 1 | 233 | 325 | 579 | 9.27e-120 | 353 |
MS.gene73877.t1 | MTR_8g098635 | 81.407 | 199 | 37 | 0 | 41 | 239 | 99 | 297 | 2.60e-118 | 339 |
MS.gene73877.t1 | MTR_8g098635 | 81.407 | 199 | 37 | 0 | 41 | 239 | 182 | 380 | 6.80e-117 | 339 |
MS.gene73877.t1 | MTR_7g078120 | 48.438 | 192 | 99 | 0 | 36 | 227 | 387 | 578 | 5.54e-60 | 199 |
MS.gene73877.t1 | MTR_7g078120 | 48.438 | 192 | 99 | 0 | 36 | 227 | 387 | 578 | 1.33e-59 | 199 |
MS.gene73877.t1 | MTR_0259s0060 | 53.591 | 181 | 37 | 1 | 34 | 214 | 14 | 147 | 4.10e-57 | 179 |
MS.gene73877.t1 | MTR_8g028905 | 50.286 | 175 | 83 | 3 | 36 | 206 | 408 | 582 | 4.61e-52 | 177 |
MS.gene73877.t1 | MTR_6g071350 | 56.000 | 150 | 46 | 3 | 20 | 166 | 266 | 398 | 2.49e-43 | 150 |
MS.gene73877.t1 | MTR_6g071350 | 47.222 | 72 | 37 | 1 | 169 | 239 | 330 | 401 | 4.26e-14 | 71.2 |
MS.gene73877.t1 | MTR_6g071355 | 64.948 | 97 | 15 | 1 | 127 | 223 | 1 | 78 | 2.84e-35 | 120 |
MS.gene73877.t1 | MTR_1g073420 | 75.000 | 68 | 17 | 0 | 166 | 233 | 61 | 128 | 5.03e-33 | 116 |
MS.gene73877.t1 | MTR_5g048010 | 48.855 | 131 | 42 | 3 | 39 | 166 | 205 | 313 | 5.16e-29 | 111 |
MS.gene73877.t1 | MTR_5g048010 | 48.611 | 72 | 36 | 1 | 169 | 239 | 245 | 316 | 7.98e-15 | 72.8 |
MS.gene73877.t1 | MTR_7g066890 | 36.842 | 171 | 100 | 2 | 35 | 199 | 193 | 361 | 6.13e-28 | 109 |
MS.gene73877.t1 | MTR_7g066890 | 36.842 | 171 | 100 | 2 | 35 | 199 | 295 | 463 | 2.65e-27 | 108 |
MS.gene73877.t1 | MTR_3g023780 | 37.912 | 182 | 100 | 5 | 34 | 204 | 147 | 326 | 1.88e-26 | 107 |
MS.gene73877.t1 | MTR_7g066880 | 29.240 | 171 | 113 | 2 | 35 | 199 | 185 | 353 | 7.67e-18 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73877.t1 | AT4G11400 | 49.275 | 207 | 98 | 3 | 34 | 238 | 372 | 573 | 1.05e-62 | 205 |
MS.gene73877.t1 | AT4G11400 | 49.275 | 207 | 98 | 3 | 34 | 238 | 372 | 573 | 1.05e-62 | 205 |
MS.gene73877.t1 | AT2G46040 | 43.860 | 171 | 92 | 2 | 38 | 205 | 362 | 531 | 1.09e-42 | 152 |
MS.gene73877.t1 | AT2G46040 | 43.860 | 171 | 92 | 2 | 38 | 205 | 362 | 531 | 1.09e-42 | 152 |
MS.gene73877.t1 | AT2G46040 | 43.860 | 171 | 92 | 2 | 38 | 205 | 376 | 545 | 1.56e-42 | 152 |
MS.gene73877.t1 | AT5G04110 | 36.420 | 162 | 91 | 4 | 35 | 185 | 361 | 521 | 1.17e-26 | 107 |
MS.gene73877.t1 | AT5G04110 | 36.420 | 162 | 91 | 4 | 35 | 185 | 360 | 520 | 1.20e-26 | 107 |
MS.gene73877.t1 | AT5G04110 | 36.420 | 162 | 91 | 4 | 35 | 185 | 360 | 520 | 1.20e-26 | 107 |
MS.gene73877.t1 | AT1G13880 | 33.511 | 188 | 97 | 5 | 34 | 204 | 136 | 312 | 1.76e-21 | 92.4 |
MS.gene73877.t1 | AT1G13880 | 33.696 | 184 | 102 | 5 | 34 | 204 | 126 | 302 | 1.85e-21 | 92.4 |
MS.gene73877.t1 | AT1G13880 | 33.696 | 184 | 102 | 5 | 34 | 204 | 127 | 303 | 1.86e-21 | 92.4 |
MS.gene73877.t1 | AT2G03470 | 34.375 | 192 | 105 | 6 | 34 | 211 | 121 | 305 | 3.25e-21 | 92.0 |
MS.gene73877.t1 | AT1G26580 | 30.769 | 195 | 116 | 4 | 28 | 204 | 127 | 320 | 3.50e-21 | 92.0 |
MS.gene73877.t1 | AT1G26580 | 30.769 | 195 | 116 | 4 | 28 | 204 | 127 | 320 | 3.50e-21 | 92.0 |
MS.gene73877.t1 | AT1G26580 | 30.769 | 195 | 116 | 4 | 28 | 204 | 61 | 254 | 3.57e-21 | 91.7 |
MS.gene73877.t1 | AT2G03470 | 34.375 | 192 | 105 | 6 | 34 | 211 | 120 | 304 | 3.89e-21 | 91.7 |
MS.gene73877.t1 | AT5G04110 | 34.247 | 146 | 84 | 4 | 35 | 169 | 360 | 504 | 1.51e-18 | 84.3 |
Find 42 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCTCAAAACAAGTCTTAT+TGG | 0.170728 | 4.1:-5851082 | MS.gene73877:CDS |
TCATTGGGGATTTGATAAAA+TGG | 0.206237 | 4.1:-5851177 | MS.gene73877:CDS |
TGATGAAGAAAAGAGATTTA+AGG | 0.278264 | 4.1:-5851126 | MS.gene73877:CDS |
GATGATGACGAAGTGGAATT+TGG | 0.312152 | 4.1:-5850936 | MS.gene73877:CDS |
AAATTTGAATCATCTTTAAC+AGG | 0.325129 | 4.1:+5851338 | None:intergenic |
TGCCTTCCTTCGAAAGCATC+TGG | 0.341525 | 4.1:+5851049 | None:intergenic |
TTTCTGAGAGTGACTCTAAA+TGG | 0.355739 | 4.1:-5851379 | MS.gene73877:CDS |
TCATCCTGTTATCAGCAATA+TGG | 0.363774 | 4.1:+5851231 | None:intergenic |
AGCTATCAGGCATCCATCTA+TGG | 0.376521 | 4.1:-5850886 | MS.gene73877:CDS |
GCATCCATCTATGGAATTCA+TGG | 0.384589 | 4.1:-5850877 | MS.gene73877:CDS |
TCACGAAAATCATCCATAGA+TGG | 0.391160 | 4.1:+5851461 | None:intergenic |
TCTCCCAACAAGATCTGTTT+CGG | 0.391180 | 4.1:+5851310 | None:intergenic |
CGACCGAAACAGATCTTGTT+GGG | 0.392797 | 4.1:-5851313 | MS.gene73877:CDS |
GATTCCATATTGCTGATAAC+AGG | 0.400946 | 4.1:-5851235 | MS.gene73877:CDS |
CACTCCATGAATTCCATAGA+TGG | 0.401034 | 4.1:+5850873 | None:intergenic |
CATTGGGGATTTGATAAAAT+GGG | 0.401799 | 4.1:-5851176 | MS.gene73877:CDS |
GTTTCGGAAGGAAAGCTATC+AGG | 0.412531 | 4.1:-5850899 | MS.gene73877:CDS |
GAAACTACACCAGTCCATTC+CGG | 0.442162 | 4.1:+5851398 | None:intergenic |
CGTGAAAAGGTTGTTTCTGT+AGG | 0.454662 | 4.1:-5851443 | MS.gene73877:CDS |
AAGAGATTTAAGGATGCAAT+GGG | 0.459473 | 4.1:-5851116 | MS.gene73877:CDS |
TCATCACTGTCAACAGCATT+CGG | 0.478391 | 4.1:+5850954 | None:intergenic |
TGTCCTCTGGAGAAAACAAC+TGG | 0.480314 | 4.1:-5851521 | MS.gene73877:CDS |
AAGTGTAACTGCAACGTTCA+AGG | 0.486984 | 4.1:-5851275 | MS.gene73877:CDS |
AAAGAGATTTAAGGATGCAA+TGG | 0.490346 | 4.1:-5851117 | MS.gene73877:CDS |
ACGACCGAAACAGATCTTGT+TGG | 0.491169 | 4.1:-5851314 | MS.gene73877:CDS |
CTCTAAATGGTTAGGCACAC+AGG | 0.491986 | 4.1:-5851366 | MS.gene73877:CDS |
GAAATCAGAAAAGTGTCCTC+TGG | 0.492152 | 4.1:-5851534 | MS.gene73877:CDS |
GAGAGTGACTCTAAATGGTT+AGG | 0.492462 | 4.1:-5851374 | MS.gene73877:CDS |
GCGAGGAAGTTTCACTTCGA+TGG | 0.518888 | 4.1:-5851154 | MS.gene73877:CDS |
ATCCAGATGCTTTCGAAGGA+AGG | 0.523376 | 4.1:-5851051 | MS.gene73877:CDS |
TTCCTTCGAAAGCATCTGGA+TGG | 0.534860 | 4.1:+5851053 | None:intergenic |
GCGGAAGTTCCGGAATGGAC+TGG | 0.543878 | 4.1:-5851407 | MS.gene73877:CDS |
GGGATTTGATAAAATGGGCG+AGG | 0.561801 | 4.1:-5851171 | MS.gene73877:CDS |
TTCAAGCGGAAGTTCCGGAA+TGG | 0.568980 | 4.1:-5851412 | MS.gene73877:CDS |
AAGGAAGGCAAGAAAAGACT+TGG | 0.584242 | 4.1:-5851036 | MS.gene73877:CDS |
ATCCATCCAGATGCTTTCGA+AGG | 0.594160 | 4.1:-5851055 | MS.gene73877:CDS |
AATGGTTAGGCACACAGGTG+TGG | 0.617036 | 4.1:-5851361 | MS.gene73877:CDS |
GAAACAGATCTTGTTGGGAG+AGG | 0.619840 | 4.1:-5851308 | MS.gene73877:CDS |
CTTGTTGGGAGAGGAAGACG+AGG | 0.636192 | 4.1:-5851299 | MS.gene73877:CDS |
AGGCAAGAAAAGACTTGGTG+AGG | 0.649236 | 4.1:-5851031 | MS.gene73877:CDS |
TGACAGTGATGATGACGAAG+TGG | 0.678639 | 4.1:-5850943 | MS.gene73877:CDS |
TGATAACAGGATGAAGCTGA+AGG | 0.716490 | 4.1:-5851222 | MS.gene73877:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTGAATCATCTTTAAC+AGG | + | chr4.1:5851040-5851059 | None:intergenic | 20.0% |
! | TGATGAAGAAAAGAGATTTA+AGG | - | chr4.1:5851249-5851268 | MS.gene73877:CDS | 25.0% |
AAAGAGATTTAAGGATGCAA+TGG | - | chr4.1:5851258-5851277 | MS.gene73877:CDS | 30.0% | |
AAGAGATTTAAGGATGCAAT+GGG | - | chr4.1:5851259-5851278 | MS.gene73877:CDS | 30.0% | |
CATTGGGGATTTGATAAAAT+GGG | - | chr4.1:5851199-5851218 | MS.gene73877:CDS | 30.0% | |
TCATTGGGGATTTGATAAAA+TGG | - | chr4.1:5851198-5851217 | MS.gene73877:CDS | 30.0% | |
! | GAATTTGGATCTTTTGATGA+TGG | - | chr4.1:5851454-5851473 | MS.gene73877:CDS | 30.0% |
! | TATGGATGATTTTCGTGAAA+AGG | - | chr4.1:5850919-5850938 | MS.gene73877:CDS | 30.0% |
!!! | AATAAGACTTGTTTTGAGAG+GGG | + | chr4.1:5851294-5851313 | None:intergenic | 30.0% |
!!! | CAATAAGACTTGTTTTGAGA+GGG | + | chr4.1:5851295-5851314 | None:intergenic | 30.0% |
GAAAAAATCTGAGCCATCTA+TGG | - | chr4.1:5850901-5850920 | MS.gene73877:CDS | 35.0% | |
GATTCCATATTGCTGATAAC+AGG | - | chr4.1:5851140-5851159 | MS.gene73877:CDS | 35.0% | |
TCACGAAAATCATCCATAGA+TGG | + | chr4.1:5850917-5850936 | None:intergenic | 35.0% | |
TCATCCTGTTATCAGCAATA+TGG | + | chr4.1:5851147-5851166 | None:intergenic | 35.0% | |
! | CCTCTCAAAACAAGTCTTAT+TGG | - | chr4.1:5851293-5851312 | MS.gene73877:CDS | 35.0% |
! | CGTTCTGTGTTTTATCATTG+GGG | - | chr4.1:5851184-5851203 | MS.gene73877:CDS | 35.0% |
! | GCGTTCTGTGTTTTATCATT+GGG | - | chr4.1:5851183-5851202 | MS.gene73877:CDS | 35.0% |
! | TGCGTTCTGTGTTTTATCAT+TGG | - | chr4.1:5851182-5851201 | MS.gene73877:CDS | 35.0% |
! | TTCTTTTTGATCACGACATC+TGG | + | chr4.1:5850884-5850903 | None:intergenic | 35.0% |
! | TTTCTGAGAGTGACTCTAAA+TGG | - | chr4.1:5850996-5851015 | MS.gene73877:CDS | 35.0% |
!!! | CCAATAAGACTTGTTTTGAG+AGG | + | chr4.1:5851296-5851315 | None:intergenic | 35.0% |
!!! | GGATCTTTTGATGATGGTTT+CGG | - | chr4.1:5851460-5851479 | MS.gene73877:CDS | 35.0% |
!!! | TGTAGGCAACTTTTTTCAAG+CGG | - | chr4.1:5850949-5850968 | MS.gene73877:CDS | 35.0% |
AAGGAAGGCAAGAAAAGACT+TGG | - | chr4.1:5851339-5851358 | MS.gene73877:CDS | 40.0% | |
AAGTGTAACTGCAACGTTCA+AGG | - | chr4.1:5851100-5851119 | MS.gene73877:CDS | 40.0% | |
CACTCCATGAATTCCATAGA+TGG | + | chr4.1:5851505-5851524 | None:intergenic | 40.0% | |
GAGAGTGACTCTAAATGGTT+AGG | - | chr4.1:5851001-5851020 | MS.gene73877:CDS | 40.0% | |
GCATCCATCTATGGAATTCA+TGG | - | chr4.1:5851498-5851517 | MS.gene73877:CDS | 40.0% | |
TCATCACTGTCAACAGCATT+CGG | + | chr4.1:5851424-5851443 | None:intergenic | 40.0% | |
TCTCCCAACAAGATCTGTTT+CGG | + | chr4.1:5851068-5851087 | None:intergenic | 40.0% | |
TGATAACAGGATGAAGCTGA+AGG | - | chr4.1:5851153-5851172 | MS.gene73877:CDS | 40.0% | |
! | GATGATGACGAAGTGGAATT+TGG | - | chr4.1:5851439-5851458 | MS.gene73877:CDS | 40.0% |
!! | CGTGAAAAGGTTGTTTCTGT+AGG | - | chr4.1:5850932-5850951 | MS.gene73877:CDS | 40.0% |
!! | GAAATCAGAAAAGTGTCCTC+TGG | - | chr4.1:5850841-5850860 | MS.gene73877:CDS | 40.0% |
!!! | CTTTTGATGATGGTTTCGGA+AGG | - | chr4.1:5851464-5851483 | MS.gene73877:CDS | 40.0% |
!!! | CTTTTTTCAAGCGGAAGTTC+CGG | - | chr4.1:5850958-5850977 | MS.gene73877:CDS | 40.0% |
ACGACCGAAACAGATCTTGT+TGG | - | chr4.1:5851061-5851080 | MS.gene73877:CDS | 45.0% | |
AGCTATCAGGCATCCATCTA+TGG | - | chr4.1:5851489-5851508 | MS.gene73877:CDS | 45.0% | |
ATCCAGATGCTTTCGAAGGA+AGG | - | chr4.1:5851324-5851343 | MS.gene73877:CDS | 45.0% | |
ATCCATCCAGATGCTTTCGA+AGG | - | chr4.1:5851320-5851339 | MS.gene73877:CDS | 45.0% | |
CGACCGAAACAGATCTTGTT+GGG | - | chr4.1:5851062-5851081 | MS.gene73877:CDS | 45.0% | |
CTCTAAATGGTTAGGCACAC+AGG | - | chr4.1:5851009-5851028 | MS.gene73877:CDS | 45.0% | |
GAAACAGATCTTGTTGGGAG+AGG | - | chr4.1:5851067-5851086 | MS.gene73877:CDS | 45.0% | |
GAAACTACACCAGTCCATTC+CGG | + | chr4.1:5850980-5850999 | None:intergenic | 45.0% | |
GGGATTTGATAAAATGGGCG+AGG | - | chr4.1:5851204-5851223 | MS.gene73877:CDS | 45.0% | |
GTTTCGGAAGGAAAGCTATC+AGG | - | chr4.1:5851476-5851495 | MS.gene73877:CDS | 45.0% | |
! | TGACAGTGATGATGACGAAG+TGG | - | chr4.1:5851432-5851451 | MS.gene73877:CDS | 45.0% |
! | TGTCCTCTGGAGAAAACAAC+TGG | - | chr4.1:5850854-5850873 | MS.gene73877:CDS | 45.0% |
!! | AGGCAAGAAAAGACTTGGTG+AGG | - | chr4.1:5851344-5851363 | MS.gene73877:CDS | 45.0% |
!! | TTCCTTCGAAAGCATCTGGA+TGG | + | chr4.1:5851325-5851344 | None:intergenic | 45.0% |
!! | TTGCCAGTTGTTTTCTCCAG+AGG | + | chr4.1:5850860-5850879 | None:intergenic | 45.0% |
AATGGTTAGGCACACAGGTG+TGG | - | chr4.1:5851014-5851033 | MS.gene73877:CDS | 50.0% | |
GCGAGGAAGTTTCACTTCGA+TGG | - | chr4.1:5851221-5851240 | MS.gene73877:CDS | 50.0% | |
TTCAAGCGGAAGTTCCGGAA+TGG | - | chr4.1:5850963-5850982 | MS.gene73877:CDS | 50.0% | |
!! | TGCCTTCCTTCGAAAGCATC+TGG | + | chr4.1:5851329-5851348 | None:intergenic | 50.0% |
CTTGTTGGGAGAGGAAGACG+AGG | - | chr4.1:5851076-5851095 | MS.gene73877:CDS | 55.0% | |
GCGGAAGTTCCGGAATGGAC+TGG | - | chr4.1:5850968-5850987 | MS.gene73877:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 5850839 | 5851558 | 5850839 | ID=MS.gene73877 |
chr4.1 | mRNA | 5850839 | 5851558 | 5850839 | ID=MS.gene73877.t1;Parent=MS.gene73877 |
chr4.1 | exon | 5850839 | 5851558 | 5850839 | ID=MS.gene73877.t1.exon1;Parent=MS.gene73877.t1 |
chr4.1 | CDS | 5850839 | 5851558 | 5850839 | ID=cds.MS.gene73877.t1;Parent=MS.gene73877.t1 |
Gene Sequence |
Protein sequence |