AlfalfaGEDB | MS.gene74774

M. sativa cultivar XinJiangDaYe / MS.gene74774

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74774.t1	XP_003621143.2	97.4	584	12	3	1	581	1	584	2.40E-292	1014.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74774.t1	A0A3Q7GFB5	42.9	524	226	14	14	514	39	512	2.8e-63	244.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74774.t1	G7KZU9	97.4	584	12	3	1	581	1	584	1.7e-292	1014.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene74774.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene74774	0.806157	9.43E-50	-1.69E-46
MS.gene049549	MS.gene74774	0.844738	6.28E-59	-1.69E-46
MS.gene049813	MS.gene74774	0.818784	1.64E-52	-1.69E-46
MS.gene050095	MS.gene74774	0.833888	4.12E-56	-1.69E-46
MS.gene050096	MS.gene74774	0.814874	1.23E-51	-1.69E-46
MS.gene050381	MS.gene74774	0.812481	4.15E-51	-1.69E-46
MS.gene050647	MS.gene74774	0.809698	1.66E-50	-1.69E-46
MS.gene050772	MS.gene74774	-0.804616	1.98E-49	-1.69E-46
MS.gene05104	MS.gene74774	0.806054	9.91E-50	-1.69E-46
MS.gene051127	MS.gene74774	0.840795	7.01E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74774.t1	MTR_7g009730	97.260	584	13	3	1	581	1	584	0.0	1163
MS.gene74774.t1	MTR_4g107970	39.583	576	260	22	37	563	68	604	2.94e-78	259
MS.gene74774.t1	MTR_4g107970	39.929	566	252	22	47	563	1	527	5.27e-77	254
MS.gene74774.t1	MTR_4g094412	44.040	302	108	10	199	486	225	479	2.36e-50	181
MS.gene74774.t1	MTR_4g094412	44.040	302	108	10	199	486	216	470	3.74e-50	180
MS.gene74774.t1	MTR_3g053330	36.426	291	114	4	190	480	225	444	1.68e-48	176
MS.gene74774.t1	MTR_7g110720	71.429	98	28	0	196	293	168	265	4.88e-47	170
MS.gene74774.t1	MTR_7g110720	71.429	98	28	0	196	293	195	292	5.18e-47	171
MS.gene74774.t1	MTR_2g088000	29.921	508	233	14	14	481	132	556	1.33e-46	173
MS.gene74774.t1	MTR_2g023930	39.044	251	127	5	31	276	135	364	2.42e-45	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74774.t1	AT5G15130	37.997	579	272	16	8	557	10	530	8.55e-82	266
MS.gene74774.t1	AT5G15130	38.704	540	250	15	47	557	1	488	8.46e-79	258
MS.gene74774.t1	AT1G18860	37.037	513	234	15	27	481	29	510	4.47e-67	227
MS.gene74774.t1	AT1G68150	40.000	300	123	8	46	332	100	355	8.92e-54	187
MS.gene74774.t1	AT4G04450	36.522	345	170	8	36	364	11	322	3.18e-53	187
MS.gene74774.t1	AT4G04450	36.522	345	170	8	36	364	105	416	3.55e-52	187
MS.gene74774.t1	AT1G69810	37.026	343	169	9	33	366	19	323	1.98e-45	165
MS.gene74774.t1	AT1G62300	40.385	260	129	7	44	301	161	396	2.32e-41	157
MS.gene74774.t1	AT4G01720	39.407	236	100	8	44	276	103	298	1.26e-40	154
MS.gene74774.t1	AT4G22070	33.808	281	99	7	44	276	115	356	8.56e-39	150

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Find 94 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTGCTAAAGAGGAGA+TGG	0.491201	7.1:-85860101	MS.gene74774:CDS
AAATCAGATACTAACTCCGT+TGG	0.628268	7.1:+85859773	None:intergenic
AAATGGTAAAGGATGCTTGA+AGG	0.499468	7.1:-85856649	MS.gene74774:CDS
AAATGTGCTAAAGAGGAGAT+GGG	0.587148	7.1:-85860100	MS.gene74774:CDS
AAATTGTTTGAAACCATTTG+AGG	0.460922	7.1:+85856681	None:intergenic
AACAAGTTATTATGGTTTGG+TGG	0.484846	7.1:+85857164	None:intergenic
AACAATAATAACAATAAATT+AGG	0.135542	7.1:-85856999	MS.gene74774:CDS
AACAATTTGTTGAATCAAAA+TGG	0.213590	7.1:-85856666	MS.gene74774:CDS
AACACCTTCAAGGCAAGCTT+TGG	0.375359	7.1:-85856868	MS.gene74774:CDS
AATGGTAAAGGATGCTTGAA+GGG	0.515986	7.1:-85856648	MS.gene74774:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAAATAGCATTGCG+GGG	+	chr7.1:85859573-85859592	None:intergenic	30.0%
AAATTGTTGAGGATTAGGAT+TGG	+	chr7.1:85856603-85856622	None:intergenic	30.0%
AATTCACCAACACAAATCAA+TGG	-	chr7.1:85860351-85860370	MS.gene74774:intron	30.0%
AATTCTTCTGAGCTATTCAT+TGG	+	chr7.1:85857856-85857875	None:intergenic	30.0%
ACCTAAAGAGAAAGAAGATA+TGG	-	chr7.1:85857762-85857781	MS.gene74774:intron	30.0%
AGTGGAAATTAGAGACAAAA+CGG	+	chr7.1:85858363-85858382	None:intergenic	30.0%
ATATATACCTGTTTCCTAAC+TGG	+	chr7.1:85858639-85858658	None:intergenic	30.0%
ATATTGTTAACAATGGATGG+AGG	+	chr7.1:85861080-85861099	None:intergenic	30.0%
CAAACTAAAATGTGCTAAAG+AGG	-	chr7.1:85857492-85857511	MS.gene74774:intron	30.0%
CAAGAAGAAAATAGAGAGAA+TGG	-	chr7.1:85860858-85860877	MS.gene74774:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	85856485	85861136	85856485	ID=MS.gene74774
chr7.1	mRNA	85856485	85861136	85856485	ID=MS.gene74774.t1;Parent=MS.gene74774
chr7.1	exon	85861029	85861136	85861029	ID=MS.gene74774.t1.exon1;Parent=MS.gene74774.t1
chr7.1	CDS	85861029	85861136	85861029	ID=cds.MS.gene74774.t1;Parent=MS.gene74774.t1
chr7.1	exon	85859598	85860134	85859598	ID=MS.gene74774.t1.exon2;Parent=MS.gene74774.t1
chr7.1	CDS	85859598	85860134	85859598	ID=cds.MS.gene74774.t1;Parent=MS.gene74774.t1
chr7.1	exon	85858971	85859084	85858971	ID=MS.gene74774.t1.exon3;Parent=MS.gene74774.t1
chr7.1	CDS	85858971	85859084	85858971	ID=cds.MS.gene74774.t1;Parent=MS.gene74774.t1
chr7.1	exon	85856485	85857471	85856485	ID=MS.gene74774.t1.exon4;Parent=MS.gene74774.t1
chr7.1	CDS	85856485	85857471	85856485	ID=cds.MS.gene74774.t1;Parent=MS.gene74774.t1

Gene Sequence

>MS.gene74774

ATGTCAAAAATGTCGAGTCCTAGCAGTTCAGAGATTGAAGAGAAAAGAGTTACTTCAATTGTTCATGAAGTTGAAGTTGATTGCTCTACTGAACAAGAGGTTACAAAGGTACACACCAATCCTAATCCTCAACAATTTTTTCTTCTTGTGCAACATGTATACTGTTCTTGAATAGTATTATTTGCAATATTGAATTTTTATTTTTACTTTGATGCTTTGTTATGTATAAGGATTATGCATATGTAGCTTGAGTTTCATATCTTTAGAAGATGAGCAATTACACTCTAGTTTGACACAAAAATGTGTTATAACAACAAAACCTCTACAACAACAACAAAACTTCTTTTCTAGTTTCAAATTTATTGGTTATCTTTGAAATAGAGAGATTTTTTGTGTTTAGGAACAATATGACTGATTATTTATAGGATAATACTTATATGCTGTACAATATTGTTGTATGTGACATAGTTCAATGTAAATATTCATAACTATTTATAAAAGTGTTAAAAGTTATAATTGTCTTAAAAAAAATCATGTCCATGTATTATTGTTTTGTTCATATAGTATTGTGGTTCAGTTTTGTTCTTGTTAATCTTTTTATGGCGTTAAAAGTTATAATTGTCTTCGAACTTTTCATATGTGTTTGTTATAGTTTAATTCATATGATACTGTATGTAAATTTTGTCCTTATTAAATCTTTTTATGACTTTAAAAGTTATAAATGTCTTAAAGTTTTTCATATTCGAATGTTATTTCTTCTTCATATGGTATAGTTGGTAAATTTTGACATCATTAAACTTTTATTGCGTTAAAGTTTTTTTTATCCACGTGTTATATATATAATAATACACATAAGTTTTATCCTTATCAATCTTTTTAGGACATTAAAAAGTTATAATTGTCTAAAAGTTTTTCATAACCTAGTGTTTTTGTCGGTATGATATCGCAAAAAAGTTTTGTTTGCGTTAATATTATTAATACTCCTATGATTTTGAATTCTAGGAAGACAAACTAAAATGTGCTAAAGAGGAGATGGGTGACGTAAAAGAAGAAAACGAAAGATTGAAGACGATGCTATCACGAGTTGAAAAAGACTACAATTCCCTCCAGCTCCGTTTCTTTGACATCGTTAACAAAGACGTTTCTATGAAAGATATAGAAGATTCATCAACTTCACACGAAGAAATCGATGAAGAACCTGAGTTTGTGTCACTTTGCCTTGGAAGAAGTCCAAATGAGTATAAGAAAGAAGCAAAAAACATTGAAAACCCTAACAAACCTAAAGAGAAAGAAGATATGGAAGTTAACCTAAGTCTTGGATTAGACTCTAAATATATGGTACCAACGGAGTTAGTATCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGTTGAAGAAAAAGGAGCAATATTTTCAACAAATAAATCAACAAAAGTGATAAATGTAAATGATGAGATTTCAGAACTATTGCCTGCTAAAAGAGTCAGAGTTTCTGTGAGAGCTAAATGTGATACTCCCACGGTTAGTATCAACTAATTAGTTACATTACAATTTTTTTAATTTTTTTAAGAAACATTGCTTATTGCTAAAAATTTACTATATTGTATTCATGGAAATTTTATATTCCCTACTGGAAAAACATCATTTAAAAAAATCATATTCACTAATAGAAAAACATCATTTAAAAATACTGAAATTTAATTTGGTAACTATATCATAAAATTAGTCGCTATTTTAGTTTCTTAAACCTCATTTGTAAATAACGACTAAAATTTAGAGACAAAACATGTAATATTCATCTCTAATTTTGACGCTAAGTGTTAGAGACACCAAATTTAGTTACCAATTTTTCTTATTCCGTTTTGTCTCTAATTTCCACTGTTATTTAAAAATTTTATTTAGTAGTAAATTTTAATTTATTGTATAAACATCGTCTCTAAATTTTTTTTTGACAATCTTTAAATAGTTATTTTGTGGTAGTAGTTTTTTGTAATTTATTCTTGTTTAATAGCTTATTGTGTGTCTTTCAAACAGATGAATGATGGATGTCAATGGAGGAAATATGGACAAAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGGAAACAGGTATATATACATTACATATATGCATTATATGATTTAAATACATTGATTCCTATAAAAAAATTTGACTAAATTTATGGTCTCTAAAAAAATTATTCATTTCTAGTCTCTATTTATTTAACAAGAGTAATTTTTTTTGTGGATTTTAGTCTTTCTTTAATCTCTTATCGGTGACTCAAACCACAATTTTTGAAGAACGAAACCTTTAGATTATAGTTTAATCGGTATAATCAGTTGAACTATGGTTGAATCGGATGAATAAATAAATAGCTACAACAAAAGTATAAAAAAGAAGTTGAATCAATCACGGTTTGATCCGATTCTAAGTGACCGAAGGTTGATCTTAGTTTAACCAACCATCAGACTTGTCGGTTCCGATTCAACCAATTAAACCTATGAGTTCAAATCTAAAACCACTGATATATTTTTTTTGAGTAAATTACACTCCCCTCCCCTCAAAGATGCTTGAATTACACTCCCCTCCCCTCTTATGTTAAAATATACACTCCCCTCCCTTGAAAAGTAAAATTTACACTCCCCTCCCCTATAAGATGCTTGAATTACAACCCTCTCTCTTGATAATTAAATATGGACTACACTTTAATCTATTTTAACATAAATAAATATTTGTATAATGTATATTAATTTTGAATCACCATTTGAAAAATATAAATTCGTTTCTTTATAATCTAAATGCCAATAACAATTAAATATAAATATTTTGCTATTAATTTTATAATTTAGAGTATAAAATTCACTTTTAAATAACCATACTTAATCAAGTTTAGTAATTTTTCACATATTTTAATTTTATTTTGTGTTGTTTCATATTTTATAATATGGTTTAAAACTATATGTTAATGAAATTGTGAATAAAAAATAGAGAAAGATATGTATTCAAAATTTGATTATATTAAAATGACCCCGCAATGCTATTTTTCTTTTAAGTGTGTTAGATTATTTTTTTGTTAGATTATTAGAAATAAAAAAAAGTATTGAGGGACTAAAGCGTAGATTTTAACATAGGGAATGTAATTCAAGCTTCTCTCAAGGGAGGGGAGTGAAATATTTTCTAATATGTTTTGAATAAGAGGGGAGGGAAGTGTAGATTTTAATATAAGAGGGGAGGGGAGTGTAATTCAAGCATCTTTGAGGAGAGGGGAGTGCAATTTACTCCTTTTTTTTTTTGAAAGAAAGATATTTATAGCATTTCATTAATAATAGGTTGTTCAATACAATAAGGTATAATAAGGAATGAGACTAGCTGTGACAACTCCAACCAAGTTGCGAGCTAACTCATTTGTTTGTCGTCCATTGAATCGACCTTAGAGTTTGTGAAGTGTGGTAAACAATCTTCTGCAAGCGGATAGAAAACACCGAAATTTTGAAAGCAAAAAATGAACCGTATAAGCATAATTTTTTTTTTTTTTACCTTATTTACATTATTGTTACTGTTTCTAAGATGTCTAGTAAGAACACCCCAAAATTTTATATGATTTCAGGTCCAAAGATGTGCTGATGACATGTCAATCTTAATCACAACATATGAAGGAACACACAATCACCCTCTTCAAGTAACAGCATCAGCCATGGCATACACAACTTCAGCTGCAGCTTCAATGATGGTATCAGGTTCATCAACATCATCATCATCATCACATCAAAATCAAAATGTTCATCACAACAATTCCACATCTTTTGGAAATTCACCAACACAAATCAATGGTCTAAATTTCAATCATCACCAATTTGAACAATCAAGAACACCAAAACAACATTTCTTCATTCCACCAAACCATAATAACTTGTTTCCAACAATCACTCTTGACCTAACTTCTCCTTCATCCTTATCATCATCAAACATAGCTTCAAATGTTCAAAGATTTTCTCCAAATAATCTTAGTTTTTGTTCCACGCAACAACCAAATTTCACACCAATATCATCCATTTGGAACAATAATAACAATAAATTAGGGTTTATTAACAATAACTCAAACCCTAATATTGAAAAAACTCAAGTTAGGCCTTTTAATCATTTCCAAGAAAATTTCTATCAAAATCAAAATTGCATGACAAGTTATTCAACACCTTCAAGGCAAGCTTTGGCTGAAACAATAAGCAAAGCAATAAGCACTGATCCAAGTCTTCATTCAGTTATAGCTGCTGCAGTTTCGTCGATTGTAGGACAAGGATCAAACAATGGTGGAAAGCAAGAAGAAAATAGAGAGAATGGTTTAGGTTCAGGGTTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAATCAAAATGGTAAAGGATGCTTGAAGGGATCATACTTCAAAAGATTGTCACCAACAAGTTCACAGGCTAAAAATTTCATGCTTCTTCAACCTTCATTGCCATTTTCTGTTTCCAAGAGCAGCGCTAGTAAACCTCCATCCATTGTTAACAATATTAACAATTTTGATCTAGATAAGAACAAACATAATTAG

Protein sequence

>MS.gene74774.t1

MSKMSSPSSSEIEEKRVTSIVHEVEVDCSTEQEVTKEDKLKCAKEEMGDVKEENERLKTMLSRVEKDYNSLQLRFFDIVNKDVSMKDIEDSSTSHEEIDEEPEFVSLCLGRSPNEYKKEAKNIENPNKPKEKEDMEVNLSLGLDSKYMVPTELVSDLSPMNSSEELPKEVEVEEKGAIFSTNKSTKVINVNDEISELLPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMVSGSSTSSSSSHQNQNVHHNNSTSFGNSPTQINGLNFNHHQFEQSRTPKQHFFIPPNHNNLFPTITLDLTSPSSLSSSNIASNVQRFSPNNLSFCSTQQPNFTPISSIWNNNNNKLGFINNNSNPNIEKTQVRPFNHFQENFYQNQNCMTSYSTPSRQALAETISKAISTDPSLHSVIAAAVSSIVGQGSNNGGKQEENRENGLGSGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTSSQAKNFMLLQPSLPFSVSKSSASKPPSIVNNINNFDLDKNKHN