Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76347.t1 | XP_003629491.1 | 98.4 | 375 | 6 | 0 | 1 | 375 | 1 | 375 | 1.30E-174 | 622.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76347.t1 | Q56XQ0 | 46.7 | 379 | 196 | 2 | 1 | 374 | 2 | 379 | 7.2e-89 | 328.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76347.t1 | G7LEW4 | 98.4 | 375 | 6 | 0 | 1 | 375 | 1 | 375 | 9.4e-175 | 622.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene76347 | 0.837824 | 4.14E-57 | -1.69E-46 |
| MS.gene049378 | MS.gene76347 | 0.819245 | 1.29E-52 | -1.69E-46 |
| MS.gene049669 | MS.gene76347 | 0.814032 | 1.89E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene76347 | 0.808229 | 3.43E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene76347 | 0.813484 | 2.50E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene76347 | 0.81111 | 8.25E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene76347 | 0.806235 | 9.08E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene76347 | 0.809242 | 2.08E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene76347 | 0.824719 | 6.93E-54 | -1.69E-46 |
| MS.gene050826 | MS.gene76347 | 0.82857 | 8.35E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene76347 | 0.834681 | 2.60E-56 | -1.69E-46 |
| MS.gene051181 | MS.gene76347 | 0.801652 | 8.14E-49 | -1.69E-46 |
| MS.gene051492 | MS.gene76347 | 0.803138 | 4.02E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene76347 | 0.800128 | 1.67E-48 | -1.69E-46 |
| MS.gene051935 | MS.gene76347 | 0.802072 | 6.67E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene76347 | 0.820128 | 8.08E-53 | -1.69E-46 |
| MS.gene052208 | MS.gene76347 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene76347 | 0.825515 | 4.50E-54 | -1.69E-46 |
| MS.gene052389 | MS.gene76347 | 0.825899 | 3.65E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene76347 | 0.8071 | 5.96E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene76347 | 0.830518 | 2.81E-55 | -1.69E-46 |
| MS.gene052674 | MS.gene76347 | 0.814365 | 1.60E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene76347 | 0.809071 | 2.27E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene76347 | 0.815287 | 9.99E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene76347 | 0.805441 | 1.33E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene76347 | 0.812322 | 4.50E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene76347 | 0.808435 | 3.10E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene76347 | 0.816243 | 6.12E-52 | -1.69E-46 |
| MS.gene05410 | MS.gene76347 | 0.813576 | 2.39E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene76347 | 0.836276 | 1.03E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene76347 | 0.841765 | 3.90E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene76347 | 0.818602 | 1.80E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene76347 | 0.81965 | 1.04E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene76347 | -0.84275 | 2.14E-58 | -1.69E-46 |
| MS.gene054405 | MS.gene76347 | 0.826989 | 2.00E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene76347 | 0.833607 | 4.84E-56 | -1.69E-46 |
| MS.gene054479 | MS.gene76347 | 0.807741 | 4.36E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene76347 | 0.802411 | 5.68E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene76347 | 0.818038 | 2.41E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene76347 | 0.839287 | 1.73E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene76347 | 0.8406 | 7.88E-58 | -1.69E-46 |
| MS.gene05604 | MS.gene76347 | 0.800956 | 1.13E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene76347 | 0.806671 | 7.35E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene76347 | 0.808892 | 2.48E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene76347 | 0.848829 | 4.77E-60 | -1.69E-46 |
| MS.gene056776 | MS.gene76347 | 0.808004 | 3.83E-50 | -1.69E-46 |
| MS.gene056779 | MS.gene76347 | 0.835607 | 1.52E-56 | -1.69E-46 |
| MS.gene056873 | MS.gene76347 | 0.808378 | 3.19E-50 | -1.69E-46 |
| MS.gene057012 | MS.gene76347 | 0.802597 | 5.20E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene76347 | 0.858121 | 1.02E-62 | -1.69E-46 |
| MS.gene057194 | MS.gene76347 | 0.810722 | 1.00E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene76347 | 0.804215 | 2.40E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene76347 | 0.819102 | 1.39E-52 | -1.69E-46 |
| MS.gene05761 | MS.gene76347 | 0.823157 | 1.61E-53 | -1.69E-46 |
| MS.gene058294 | MS.gene76347 | 0.800395 | 1.47E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene76347 | 0.810268 | 1.25E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene76347 | 0.828608 | 8.18E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene76347 | 0.813063 | 3.09E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene76347 | 0.813691 | 2.25E-51 | -1.69E-46 |
| MS.gene059952 | MS.gene76347 | 0.815204 | 1.04E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene76347 | 0.828349 | 9.45E-55 | -1.69E-46 |
| MS.gene060167 | MS.gene76347 | 0.803258 | 3.80E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene76347 | 0.815011 | 1.15E-51 | -1.69E-46 |
| MS.gene060373 | MS.gene76347 | 0.833982 | 3.90E-56 | -1.69E-46 |
| MS.gene060572 | MS.gene76347 | 0.819084 | 1.40E-52 | -1.69E-46 |
| MS.gene060777 | MS.gene76347 | 0.802843 | 4.63E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene76347 | 0.837868 | 4.03E-57 | -1.69E-46 |
| MS.gene060879 | MS.gene76347 | 0.84101 | 6.16E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76347.t1 | MTR_8g078100 | 98.667 | 375 | 5 | 0 | 1 | 375 | 1 | 375 | 0.0 | 760 |
| MS.gene76347.t1 | MTR_5g019430 | 70.822 | 377 | 105 | 2 | 1 | 372 | 1 | 377 | 0.0 | 546 |
| MS.gene76347.t1 | MTR_4g069160 | 57.825 | 377 | 153 | 4 | 1 | 375 | 1 | 373 | 2.44e-146 | 419 |
| MS.gene76347.t1 | MTR_1g034480 | 55.467 | 375 | 160 | 3 | 1 | 374 | 1 | 369 | 1.02e-137 | 397 |
| MS.gene76347.t1 | MTR_3g011140 | 63.514 | 74 | 27 | 0 | 285 | 358 | 1 | 74 | 9.94e-27 | 102 |
| MS.gene76347.t1 | MTR_8g068520 | 22.293 | 314 | 206 | 7 | 76 | 373 | 86 | 377 | 5.42e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76347.t1 | AT2G18630 | 54.090 | 379 | 168 | 2 | 1 | 374 | 2 | 379 | 1.32e-138 | 400 |
| MS.gene76347.t1 | AT2G18630 | 54.090 | 379 | 168 | 2 | 1 | 374 | 2 | 379 | 1.59e-138 | 400 |
| MS.gene76347.t1 | AT4G34320 | 55.319 | 376 | 159 | 5 | 1 | 375 | 1 | 368 | 7.86e-133 | 385 |
| MS.gene76347.t1 | AT4G34320 | 55.319 | 376 | 159 | 5 | 1 | 375 | 1 | 368 | 7.86e-133 | 385 |
| MS.gene76347.t1 | AT5G66675 | 53.406 | 367 | 161 | 4 | 16 | 374 | 32 | 396 | 2.56e-128 | 375 |
| MS.gene76347.t1 | AT5G66675 | 53.406 | 367 | 161 | 4 | 16 | 374 | 32 | 396 | 2.56e-128 | 375 |
| MS.gene76347.t1 | AT5G66675 | 53.406 | 367 | 161 | 4 | 16 | 374 | 32 | 396 | 2.56e-128 | 375 |
| MS.gene76347.t1 | AT5G66675 | 53.406 | 367 | 161 | 4 | 16 | 374 | 32 | 396 | 2.56e-128 | 375 |
| MS.gene76347.t1 | AT4G34330 | 48.851 | 348 | 162 | 3 | 24 | 371 | 17 | 348 | 2.92e-107 | 319 |
| MS.gene76347.t1 | AT5G66670 | 41.899 | 358 | 201 | 2 | 21 | 371 | 35 | 392 | 3.50e-89 | 275 |
| MS.gene76347.t1 | AT5G66670 | 41.899 | 358 | 201 | 2 | 21 | 371 | 35 | 392 | 3.50e-89 | 275 |
| MS.gene76347.t1 | AT5G66670 | 41.899 | 358 | 201 | 2 | 21 | 371 | 35 | 392 | 3.50e-89 | 275 |
| MS.gene76347.t1 | AT5G66670 | 41.899 | 358 | 201 | 2 | 21 | 371 | 35 | 392 | 3.50e-89 | 275 |
| MS.gene76347.t1 | AT5G66660 | 41.713 | 362 | 203 | 2 | 21 | 374 | 35 | 396 | 5.80e-86 | 266 |
| MS.gene76347.t1 | AT3G28270 | 27.095 | 358 | 245 | 7 | 28 | 370 | 16 | 372 | 6.08e-35 | 132 |
| MS.gene76347.t1 | AT3G28270 | 27.095 | 358 | 245 | 7 | 28 | 370 | 16 | 372 | 6.08e-35 | 132 |
| MS.gene76347.t1 | AT3G28290 | 24.462 | 372 | 254 | 8 | 24 | 370 | 11 | 380 | 9.84e-30 | 118 |
| MS.gene76347.t1 | AT3G28300 | 24.462 | 372 | 254 | 8 | 24 | 370 | 11 | 380 | 9.84e-30 | 118 |
| MS.gene76347.t1 | AT3G57100 | 25.705 | 319 | 210 | 5 | 65 | 370 | 43 | 347 | 1.50e-25 | 106 |
| MS.gene76347.t1 | AT3G28320 | 24.444 | 315 | 211 | 8 | 80 | 370 | 2 | 313 | 3.76e-20 | 90.5 |
Find 50 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTTGTTAAAGTTATTT+TGG | 0.163128 | 8.1:+29572805 | MS.gene76347:CDS |
| TCATCAAAACTTTGCAAGTT+TGG | 0.189922 | 8.1:-29572665 | None:intergenic |
| GCTGCGTTGGTTGTTCCATT+AGG | 0.253208 | 8.1:+29573301 | MS.gene76347:CDS |
| TCGGGTGCTTACAAACAAAT+TGG | 0.255573 | 8.1:+29573447 | MS.gene76347:CDS |
| TGGATTGCAAGAGGGATATA+TGG | 0.257789 | 8.1:+29572825 | MS.gene76347:CDS |
| AAATAAAACTCCTCTGTAAA+AGG | 0.261071 | 8.1:-29573073 | None:intergenic |
| TTTGAAGAAGAGGTGCAAAA+TGG | 0.287245 | 8.1:+29572986 | MS.gene76347:CDS |
| TTACATTTCATTGAAGGATT+TGG | 0.290195 | 8.1:+29573417 | MS.gene76347:CDS |
| TTGCTACTGGTGTTGAAGTT+AGG | 0.293911 | 8.1:+29572726 | MS.gene76347:CDS |
| CTGCGTTGGTTGTTCCATTA+GGG | 0.303758 | 8.1:+29573302 | MS.gene76347:CDS |
| CATTAGGGTCAGTTGGAAAA+TGG | 0.326311 | 8.1:+29573317 | MS.gene76347:CDS |
| GGGTTATGAGAAGGCTATAA+AGG | 0.331087 | 8.1:+29573357 | MS.gene76347:CDS |
| TGAAGGATTTGGACAACATT+CGG | 0.353812 | 8.1:+29573428 | MS.gene76347:CDS |
| GTTATTAGTTCTCTTGCTAC+TGG | 0.384834 | 8.1:+29572713 | MS.gene76347:CDS |
| GAAGGATTTGGACAACATTC+GGG | 0.389768 | 8.1:+29573429 | MS.gene76347:CDS |
| GCAGCCAAAGCTGTTACAAC+TGG | 0.412158 | 8.1:-29573280 | None:intergenic |
| GGATTGCAAGAGGGATATAT+GGG | 0.412828 | 8.1:+29572826 | MS.gene76347:CDS |
| TCAAAGACCTCATCTTAATC+AGG | 0.418187 | 8.1:-29573670 | None:intergenic |
| TCCGCCAGTTGTAACAGCTT+TGG | 0.428937 | 8.1:+29573276 | MS.gene76347:CDS |
| GAGGTGCAAAATGGGCTTGA+AGG | 0.435928 | 8.1:+29572995 | MS.gene76347:CDS |
| TTGAAGAAGAGGTGCAAAAT+GGG | 0.439323 | 8.1:+29572987 | MS.gene76347:CDS |
| AAGAGAACTAATAACCCTAT+TGG | 0.447555 | 8.1:-29572705 | None:intergenic |
| GGTTATGAGAAGGCTATAAA+GGG | 0.448159 | 8.1:+29573358 | MS.gene76347:CDS |
| GTATTAAAGAGCATACCAAT+AGG | 0.457807 | 8.1:+29572690 | MS.gene76347:CDS |
| TGGTACTTACATTTCATTGA+AGG | 0.469068 | 8.1:+29573411 | MS.gene76347:CDS |
| AACAGCTTTGGCTGCTGCGT+TGG | 0.469212 | 8.1:+29573288 | MS.gene76347:CDS |
| AATTACAAAACTCCAACGTC+TGG | 0.474086 | 8.1:-29572898 | None:intergenic |
| AGGTGCAAAATGGGCTTGAA+GGG | 0.480313 | 8.1:+29572996 | MS.gene76347:CDS |
| CTCTTGAGAAATGTTTGAGA+CGG | 0.491708 | 8.1:+29572921 | MS.gene76347:CDS |
| TGAAGACATTGCAAGAGCTT+AGG | 0.500716 | 8.1:+29573029 | MS.gene76347:CDS |
| AGGAAATTCAAGCAAGATGA+TGG | 0.501543 | 8.1:+29572556 | MS.gene76347:CDS |
| GTTGTTCCATTAGGGTCAGT+TGG | 0.502956 | 8.1:+29573310 | MS.gene76347:CDS |
| TCAATCGGTTTATACGCAGC+AGG | 0.509528 | 8.1:+29573102 | MS.gene76347:CDS |
| TATTAAAGAGCATACCAATA+GGG | 0.511363 | 8.1:+29572691 | MS.gene76347:CDS |
| TCTTGAGAAATGTTTGAGAC+GGG | 0.517157 | 8.1:+29572922 | MS.gene76347:CDS |
| AAACAAGGATTTGTTCGCGT+TGG | 0.546843 | 8.1:+29572850 | MS.gene76347:CDS |
| AATTGAAATCTCTCAAGTCA+TGG | 0.554098 | 8.1:+29573173 | MS.gene76347:CDS |
| GAATCAAGTGATTGTTAAGT+CGG | 0.557993 | 8.1:+29572952 | MS.gene76347:CDS |
| AATCTCTCAAGTCATGGAAG+AGG | 0.565998 | 8.1:+29573179 | MS.gene76347:CDS |
| GCCAAAGCTGTTACAACTGG+CGG | 0.571434 | 8.1:-29573277 | None:intergenic |
| GATTTGCAATTTCTTCAACA+TGG | 0.599579 | 8.1:-29573128 | None:intergenic |
| ATCTCTCAAGTCATGGAAGA+GGG | 0.600067 | 8.1:+29573180 | MS.gene76347:CDS |
| TGATAATAGTCTCCAGACGT+TGG | 0.605979 | 8.1:+29572886 | MS.gene76347:CDS |
| GAGGGATATATGGGGAAACA+AGG | 0.609168 | 8.1:+29572835 | MS.gene76347:CDS |
| GGTGCAAAATGGGCTTGAAG+GGG | 0.611042 | 8.1:+29572997 | MS.gene76347:CDS |
| GTAGTTAGCTCAATGCAGCT+TGG | 0.613218 | 8.1:+29573391 | MS.gene76347:CDS |
| ATCTGAGGTATTAAGATGGG+AGG | 0.616456 | 8.1:+29572536 | None:intergenic |
| GTGCAAAATGGGCTTGAAGG+GGG | 0.641754 | 8.1:+29572998 | MS.gene76347:CDS |
| GATTGCAAGAGGGATATATG+GGG | 0.687000 | 8.1:+29572827 | MS.gene76347:CDS |
| GTCGACAGATAAGAAAAGCG+AGG | 0.701787 | 8.1:+29573617 | MS.gene76347:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATTTGTTGTTTCAAT+CGG | + | chr8.1:29573087-29573106 | MS.gene76347:CDS | 20.0% |
| !!! | TGAAGTTGTTAAAGTTATTT+TGG | + | chr8.1:29572805-29572824 | MS.gene76347:CDS | 20.0% |
| ! | AAATAAAACTCCTCTGTAAA+AGG | - | chr8.1:29573076-29573095 | None:intergenic | 25.0% |
| ! | TTACATTTCATTGAAGGATT+TGG | + | chr8.1:29573417-29573436 | MS.gene76347:CDS | 25.0% |
| !! | TATTAAAGAGCATACCAATA+GGG | + | chr8.1:29572691-29572710 | MS.gene76347:CDS | 25.0% |
| !! | TGATTTTGCTCTTAAAAATG+AGG | + | chr8.1:29573501-29573520 | MS.gene76347:CDS | 25.0% |
| !!! | GATTACTTATTTTGAAGAAG+AGG | + | chr8.1:29572976-29572995 | MS.gene76347:CDS | 25.0% |
| AAGAGAACTAATAACCCTAT+TGG | - | chr8.1:29572708-29572727 | None:intergenic | 30.0% | |
| AATTGAAATCTCTCAAGTCA+TGG | + | chr8.1:29573173-29573192 | MS.gene76347:CDS | 30.0% | |
| GAATCAAGTGATTGTTAAGT+CGG | + | chr8.1:29572952-29572971 | MS.gene76347:CDS | 30.0% | |
| GATTTGCAATTTCTTCAACA+TGG | - | chr8.1:29573131-29573150 | None:intergenic | 30.0% | |
| GCTAATGATTGCACAAAAAT+GGG | + | chr8.1:29572584-29572603 | MS.gene76347:CDS | 30.0% | |
| TCATCAAAACTTTGCAAGTT+TGG | - | chr8.1:29572668-29572687 | None:intergenic | 30.0% | |
| TGCTAATGATTGCACAAAAA+TGG | + | chr8.1:29572583-29572602 | MS.gene76347:CDS | 30.0% | |
| TGGTACTTACATTTCATTGA+AGG | + | chr8.1:29573411-29573430 | MS.gene76347:CDS | 30.0% | |
| ! | GTATTAAAGAGCATACCAAT+AGG | + | chr8.1:29572690-29572709 | MS.gene76347:CDS | 30.0% |
| !! | ACTTTTTAAGGGTTATGAGA+AGG | + | chr8.1:29573348-29573367 | MS.gene76347:CDS | 30.0% |
| !! | TTAGGAATTTTAAGGATGCT+GGG | + | chr8.1:29573047-29573066 | MS.gene76347:CDS | 30.0% |
| !!! | AAGTTATTTTGGATTGCAAG+AGG | + | chr8.1:29572816-29572835 | MS.gene76347:CDS | 30.0% |
| !!! | AGAAACTTTTTCAGAGACAT+TGG | + | chr8.1:29573564-29573583 | MS.gene76347:CDS | 30.0% |
| !!! | AGTTATTTTGGATTGCAAGA+GGG | + | chr8.1:29572817-29572836 | MS.gene76347:CDS | 30.0% |
| !!! | ATGGTGTAACTCACTTTTTA+AGG | + | chr8.1:29573336-29573355 | MS.gene76347:CDS | 30.0% |
| !!! | TGGTGTAACTCACTTTTTAA+GGG | + | chr8.1:29573337-29573356 | MS.gene76347:CDS | 30.0% |
| !!! | TTTTTTGGCTGCTTTTGTTT+CGG | + | chr8.1:29573216-29573235 | MS.gene76347:CDS | 30.0% |
| AATTACAAAACTCCAACGTC+TGG | - | chr8.1:29572901-29572920 | None:intergenic | 35.0% | |
| AGGAAATTCAAGCAAGATGA+TGG | + | chr8.1:29572556-29572575 | MS.gene76347:CDS | 35.0% | |
| CTCTTGAGAAATGTTTGAGA+CGG | + | chr8.1:29572921-29572940 | MS.gene76347:CDS | 35.0% | |
| GGTTATGAGAAGGCTATAAA+GGG | + | chr8.1:29573358-29573377 | MS.gene76347:CDS | 35.0% | |
| TGAAGGATTTGGACAACATT+CGG | + | chr8.1:29573428-29573447 | MS.gene76347:CDS | 35.0% | |
| ! | GCAAGAGCTTAGGAATTTTA+AGG | + | chr8.1:29573039-29573058 | MS.gene76347:CDS | 35.0% |
| ! | GTTATTAGTTCTCTTGCTAC+TGG | + | chr8.1:29572713-29572732 | MS.gene76347:CDS | 35.0% |
| ! | TCTTGAGAAATGTTTGAGAC+GGG | + | chr8.1:29572922-29572941 | MS.gene76347:CDS | 35.0% |
| ! | TTGAAGAAGAGGTGCAAAAT+GGG | + | chr8.1:29572987-29573006 | MS.gene76347:CDS | 35.0% |
| ! | TTTGAAGAAGAGGTGCAAAA+TGG | + | chr8.1:29572986-29573005 | MS.gene76347:CDS | 35.0% |
| !! | CTTAGGAATTTTAAGGATGC+TGG | + | chr8.1:29573046-29573065 | MS.gene76347:CDS | 35.0% |
| !! | TAGGAATTTTAAGGATGCTG+GGG | + | chr8.1:29573048-29573067 | MS.gene76347:CDS | 35.0% |
| !!! | GGTGTCGAATGCAATTTTTT+TGG | + | chr8.1:29573201-29573220 | MS.gene76347:CDS | 35.0% |
| AATCTCTCAAGTCATGGAAG+AGG | + | chr8.1:29573179-29573198 | MS.gene76347:CDS | 40.0% | |
| ATCTCTCAAGTCATGGAAGA+GGG | + | chr8.1:29573180-29573199 | MS.gene76347:CDS | 40.0% | |
| CATTAGGGTCAGTTGGAAAA+TGG | + | chr8.1:29573317-29573336 | MS.gene76347:CDS | 40.0% | |
| GAAGGATTTGGACAACATTC+GGG | + | chr8.1:29573429-29573448 | MS.gene76347:CDS | 40.0% | |
| GATTGCAAGAGGGATATATG+GGG | + | chr8.1:29572827-29572846 | MS.gene76347:CDS | 40.0% | |
| GGATTGCAAGAGGGATATAT+GGG | + | chr8.1:29572826-29572845 | MS.gene76347:CDS | 40.0% | |
| GGGTTATGAGAAGGCTATAA+AGG | + | chr8.1:29573357-29573376 | MS.gene76347:CDS | 40.0% | |
| TCGGGTGCTTACAAACAAAT+TGG | + | chr8.1:29573447-29573466 | MS.gene76347:CDS | 40.0% | |
| TGAAGACATTGCAAGAGCTT+AGG | + | chr8.1:29573029-29573048 | MS.gene76347:CDS | 40.0% | |
| TGATAATAGTCTCCAGACGT+TGG | + | chr8.1:29572886-29572905 | MS.gene76347:CDS | 40.0% | |
| TGGATTGCAAGAGGGATATA+TGG | + | chr8.1:29572825-29572844 | MS.gene76347:CDS | 40.0% | |
| ! | AAACAAGGATTTGTTCGCGT+TGG | + | chr8.1:29572850-29572869 | MS.gene76347:CDS | 40.0% |
| ! | CATTTTCCAACTGACCCTAA+TGG | - | chr8.1:29573319-29573338 | None:intergenic | 40.0% |
| ! | TTGCTACTGGTGTTGAAGTT+AGG | + | chr8.1:29572726-29572745 | MS.gene76347:CDS | 40.0% |
| !!! | TTCGGTGTTGATTTTCTCTG+TGG | + | chr8.1:29573234-29573253 | MS.gene76347:CDS | 40.0% |
| GAGGGATATATGGGGAAACA+AGG | + | chr8.1:29572835-29572854 | MS.gene76347:CDS | 45.0% | |
| GTAGTTAGCTCAATGCAGCT+TGG | + | chr8.1:29573391-29573410 | MS.gene76347:CDS | 45.0% | |
| GTCGACAGATAAGAAAAGCG+AGG | + | chr8.1:29573617-29573636 | MS.gene76347:CDS | 45.0% | |
| GTTGTTCCATTAGGGTCAGT+TGG | + | chr8.1:29573310-29573329 | MS.gene76347:CDS | 45.0% | |
| ! | AGGTGCAAAATGGGCTTGAA+GGG | + | chr8.1:29572996-29573015 | MS.gene76347:CDS | 45.0% |
| ! | TCAATCGGTTTATACGCAGC+AGG | + | chr8.1:29573102-29573121 | MS.gene76347:CDS | 45.0% |
| !! | CTGCGTTGGTTGTTCCATTA+GGG | + | chr8.1:29573302-29573321 | MS.gene76347:CDS | 45.0% |
| GCAGCCAAAGCTGTTACAAC+TGG | - | chr8.1:29573283-29573302 | None:intergenic | 50.0% | |
| GCCAAAGCTGTTACAACTGG+CGG | - | chr8.1:29573280-29573299 | None:intergenic | 50.0% | |
| TCCGCCAGTTGTAACAGCTT+TGG | + | chr8.1:29573276-29573295 | MS.gene76347:CDS | 50.0% | |
| ! | GAGGTGCAAAATGGGCTTGA+AGG | + | chr8.1:29572995-29573014 | MS.gene76347:CDS | 50.0% |
| ! | GGTGCAAAATGGGCTTGAAG+GGG | + | chr8.1:29572997-29573016 | MS.gene76347:CDS | 50.0% |
| ! | GTGCAAAATGGGCTTGAAGG+GGG | + | chr8.1:29572998-29573017 | MS.gene76347:CDS | 50.0% |
| ! | TGCTGGGGATCCTTTTACAG+AGG | + | chr8.1:29573063-29573082 | MS.gene76347:CDS | 50.0% |
| !! | GCTGCGTTGGTTGTTCCATT+AGG | + | chr8.1:29573301-29573320 | MS.gene76347:CDS | 50.0% |
| ! | AACAGCTTTGGCTGCTGCGT+TGG | + | chr8.1:29573288-29573307 | MS.gene76347:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 29572551 | 29573678 | 29572551 | ID=MS.gene76347 |
| chr8.1 | mRNA | 29572551 | 29573678 | 29572551 | ID=MS.gene76347.t1;Parent=MS.gene76347 |
| chr8.1 | exon | 29572551 | 29573678 | 29572551 | ID=MS.gene76347.t1.exon1;Parent=MS.gene76347.t1 |
| chr8.1 | CDS | 29572551 | 29573678 | 29572551 | ID=cds.MS.gene76347.t1;Parent=MS.gene76347.t1 |
| Gene Sequence |
| Protein sequence |
