Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81680.t1 | XP_003616812.1 | 85.5 | 173 | 12 | 1 | 1 | 173 | 1 | 160 | 2.60E-21 | 112.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81680.t1 | Q09134 | 99.4 | 159 | 1 | 0 | 15 | 173 | 1 | 159 | 9.5e-20 | 98.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81680.t1 | G7K7E0 | 85.5 | 173 | 12 | 1 | 1 | 173 | 1 | 160 | 1.9e-21 | 112.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene81680 | 0.804039 | 2.62E-49 | -1.69E-46 |
| MS.gene049346 | MS.gene81680 | 0.817473 | 3.24E-52 | -1.69E-46 |
| MS.gene049599 | MS.gene81680 | -0.826518 | 2.60E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene81680 | 0.8615 | 9.83E-64 | -1.69E-46 |
| MS.gene050076 | MS.gene81680 | 0.824707 | 6.97E-54 | -1.69E-46 |
| MS.gene050128 | MS.gene81680 | 0.837873 | 4.02E-57 | -1.69E-46 |
| MS.gene050301 | MS.gene81680 | 0.832962 | 7.01E-56 | -1.69E-46 |
| MS.gene050397 | MS.gene81680 | 0.808419 | 3.13E-50 | -1.69E-46 |
| MS.gene050404 | MS.gene81680 | 0.889589 | 2.12E-73 | -1.69E-46 |
| MS.gene050406 | MS.gene81680 | 0.877737 | 4.94E-69 | -1.69E-46 |
| MS.gene050529 | MS.gene81680 | 0.825627 | 4.23E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene81680 | 0.817524 | 3.15E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene81680 | 0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene051240 | MS.gene81680 | 0.824238 | 9.00E-54 | -1.69E-46 |
| MS.gene051242 | MS.gene81680 | 0.812902 | 3.36E-51 | -1.69E-46 |
| MS.gene051471 | MS.gene81680 | 0.844514 | 7.21E-59 | -1.69E-46 |
| MS.gene051662 | MS.gene81680 | 0.80982 | 1.57E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene81680 | 0.810207 | 1.29E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene81680 | 0.813941 | 1.98E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene81680 | 0.838384 | 2.97E-57 | -1.69E-46 |
| MS.gene052178 | MS.gene81680 | 0.867638 | 1.18E-65 | -1.69E-46 |
| MS.gene052188 | MS.gene81680 | 0.800359 | 1.50E-48 | -1.69E-46 |
| MS.gene052290 | MS.gene81680 | 0.809052 | 2.29E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene81680 | -0.804275 | 2.34E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene81680 | 0.808697 | 2.73E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene81680 | 0.851816 | 6.94E-61 | -1.69E-46 |
| MS.gene053073 | MS.gene81680 | 0.862277 | 5.68E-64 | -1.69E-46 |
| MS.gene053209 | MS.gene81680 | 0.803027 | 4.24E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene81680 | 0.867624 | 1.19E-65 | -1.69E-46 |
| MS.gene053836 | MS.gene81680 | 0.842723 | 2.17E-58 | -1.69E-46 |
| MS.gene053907 | MS.gene81680 | 0.84606 | 2.75E-59 | -1.69E-46 |
| MS.gene053971 | MS.gene81680 | 0.84682 | 1.71E-59 | -1.69E-46 |
| MS.gene054327 | MS.gene81680 | 0.81468 | 1.36E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene81680 | 0.811355 | 7.30E-51 | -1.69E-46 |
| MS.gene055254 | MS.gene81680 | 0.822652 | 2.11E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene81680 | 0.830198 | 3.36E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene81680 | 0.840273 | 9.60E-58 | -1.69E-46 |
| MS.gene055428 | MS.gene81680 | 0.842096 | 3.19E-58 | -1.69E-46 |
| MS.gene05553 | MS.gene81680 | 0.800372 | 1.49E-48 | -1.69E-46 |
| MS.gene055712 | MS.gene81680 | 0.81448 | 1.51E-51 | -1.69E-46 |
| MS.gene056314 | MS.gene81680 | 0.801256 | 9.81E-49 | -1.69E-46 |
| MS.gene056451 | MS.gene81680 | 0.814229 | 1.71E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene81680 | 0.865477 | 5.74E-65 | -1.69E-46 |
| MS.gene056664 | MS.gene81680 | 0.810162 | 1.32E-50 | -1.69E-46 |
| MS.gene056719 | MS.gene81680 | 0.808948 | 2.41E-50 | -1.69E-46 |
| MS.gene056772 | MS.gene81680 | 0.830795 | 2.40E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene81680 | 0.864343 | 1.30E-64 | -1.69E-46 |
| MS.gene057439 | MS.gene81680 | 0.828513 | 8.62E-55 | -1.69E-46 |
| MS.gene058002 | MS.gene81680 | 0.834339 | 3.17E-56 | -1.69E-46 |
| MS.gene058082 | MS.gene81680 | 0.824904 | 6.27E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene81680 | 0.820669 | 6.07E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene81680 | 0.829877 | 4.02E-55 | -1.69E-46 |
| MS.gene058201 | MS.gene81680 | 0.809371 | 1.96E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene81680 | 0.822955 | 1.80E-53 | -1.69E-46 |
| MS.gene058276 | MS.gene81680 | 0.832624 | 8.50E-56 | -1.69E-46 |
| MS.gene058746 | MS.gene81680 | 0.803943 | 2.74E-49 | -1.69E-46 |
| MS.gene058845 | MS.gene81680 | 0.810715 | 1.00E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene81680 | 0.805207 | 1.49E-49 | -1.69E-46 |
| MS.gene059228 | MS.gene81680 | 0.828427 | 9.04E-55 | -1.69E-46 |
| MS.gene059518 | MS.gene81680 | 0.835694 | 1.45E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene81680 | 0.824085 | 9.77E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene81680 | 0.8225 | 2.29E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene81680 | 0.8143 | 1.65E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene81680 | 0.818972 | 1.48E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene81680 | 0.914439 | 1.91E-84 | -1.69E-46 |
| MS.gene059899 | MS.gene81680 | 0.8532 | 2.80E-61 | -1.69E-46 |
| MS.gene06037 | MS.gene81680 | 0.840513 | 8.31E-58 | -1.69E-46 |
| MS.gene060407 | MS.gene81680 | 0.840762 | 7.15E-58 | -1.69E-46 |
| MS.gene060476 | MS.gene81680 | 0.824413 | 8.18E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene81680 | 0.896026 | 5.47E-76 | -1.69E-46 |
| MS.gene061112 | MS.gene81680 | 0.886366 | 3.64E-72 | -1.69E-46 |
| MS.gene061113 | MS.gene81680 | 0.826405 | 2.76E-54 | -1.69E-46 |
| MS.gene061265 | MS.gene81680 | 0.883006 | 6.46E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81680.t1 | MTR_5g084570 | 94.000 | 50 | 3 | 0 | 1 | 50 | 1 | 50 | 1.82e-27 | 101 |
| MS.gene81680.t1 | MTR_5g084540 | 100.000 | 26 | 0 | 0 | 148 | 173 | 135 | 160 | 1.37e-14 | 67.8 |
| MS.gene81680.t1 | MTR_5g084530 | 74.000 | 50 | 12 | 1 | 1 | 50 | 1 | 49 | 6.63e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTACCTTTGATGCCAAAA+AGG | 0.253882 | 5.1:-66576401 | MS.gene81680:CDS |
| GTTGTAACCTCCACCATATT+TGG | 0.288132 | 5.1:+66576224 | None:intergenic |
| GAAGTAAACGATGCCAAATA+TGG | 0.342429 | 5.1:-66576237 | MS.gene81680:CDS |
| ACCTGCCATGGCAATGGTAT+TGG | 0.432416 | 5.1:+66575926 | None:intergenic |
| GAACCATAGCCAAGAGGCCT+AGG | 0.443599 | 5.1:+66576464 | None:intergenic |
| CATCCTAGGCCTCTTGGCTA+TGG | 0.447886 | 5.1:-66576467 | MS.gene81680:CDS |
| AATCCTCATCCTAGGCCTCT+TGG | 0.458683 | 5.1:-66576473 | MS.gene81680:CDS |
| GCCAATACCATTGCCATGGC+AGG | 0.481585 | 5.1:-66575927 | MS.gene81680:CDS |
| AGTGTTGTCCTTAGCTTGCA+TGG | 0.498460 | 5.1:+66575879 | None:intergenic |
| GGTGGTTACAACCATGGTGG+AGG | 0.499176 | 5.1:-66576033 | MS.gene81680:CDS |
| GGTGGCTACAACCATGGTGG+AGG | 0.500815 | 5.1:-66575997 | MS.gene81680:CDS |
| GGATACAACCACGGTGGTGG+TGG | 0.504414 | 5.1:-66576135 | MS.gene81680:CDS |
| GGTGGATACAACCACGGTGG+TGG | 0.511490 | 5.1:-66576138 | MS.gene81680:CDS |
| AGAAAAGCAATCCTCATCCT+AGG | 0.516305 | 5.1:-66576481 | MS.gene81680:CDS |
| GGATACAACAATGGTGGAGG+TGG | 0.518813 | 5.1:-66576072 | MS.gene81680:CDS |
| GGATACAACAATGGTGGAGG+TGG | 0.518813 | 5.1:-66576114 | MS.gene81680:CDS |
| GGAGGTTACAACCACGGCGG+TGG | 0.523190 | 5.1:-66576213 | MS.gene81680:CDS |
| GGCTACAACCATGGTGGAGG+CGG | 0.523424 | 5.1:-66575994 | MS.gene81680:CDS |
| GGCGGTTACAACCACGGTGG+AGG | 0.523588 | 5.1:-66575955 | MS.gene81680:CDS |
| GGCGGTTACAACCACGGTGG+AGG | 0.523588 | 5.1:-66575976 | MS.gene81680:CDS |
| GGATACAACCACGGTGGTGG+TGG | 0.524452 | 5.1:-66576093 | MS.gene81680:CDS |
| GGTTACAACCACGGTGGTGG+TGG | 0.527779 | 5.1:-66576174 | MS.gene81680:CDS |
| TAGCCAAGAGGCCTAGGATG+AGG | 0.538496 | 5.1:+66576470 | None:intergenic |
| ATTTGTTGCCATGCAAGCTA+AGG | 0.539995 | 5.1:-66575887 | MS.gene81680:CDS |
| AATGGTGGTGGCTACAACCA+TGG | 0.544536 | 5.1:-66576003 | MS.gene81680:CDS |
| GGTTACAACCACGGCGGTGG+TGG | 0.544864 | 5.1:-66576210 | MS.gene81680:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.545650 | 5.1:-66576015 | MS.gene81680:CDS |
| GGTTACAACCATGGTGGAGG+TGG | 0.547395 | 5.1:-66576030 | MS.gene81680:CDS |
| GGAGGTTACAACCACGGTGG+TGG | 0.547932 | 5.1:-66576177 | MS.gene81680:CDS |
| GGATACAACCACGGTGGTGG+TGG | 0.553440 | 5.1:-66576051 | MS.gene81680:CDS |
| TTCCTCAGAAGTCTCAGCTA+GGG | 0.554700 | 5.1:-66576434 | MS.gene81680:CDS |
| GGTGGATACAACCACGGTGG+TGG | 0.558361 | 5.1:-66576054 | MS.gene81680:CDS |
| GGTGGATACAACCACGGTGG+TGG | 0.558361 | 5.1:-66576096 | MS.gene81680:CDS |
| CATGTGAGCAGCACCTGCCA+TGG | 0.559419 | 5.1:+66575914 | None:intergenic |
| TTTCCTCAGAAGTCTCAGCT+AGG | 0.560253 | 5.1:-66576435 | MS.gene81680:CDS |
| CACGGCGGTGGTGGTTACAA+TGG | 0.571191 | 5.1:-66576201 | MS.gene81680:CDS |
| GGTTACAACCACGGTGGAGG+CGG | 0.572554 | 5.1:-66575952 | MS.gene81680:CDS |
| AACGATGCCAAATATGGTGG+AGG | 0.573315 | 5.1:-66576231 | MS.gene81680:CDS |
| GGTTACAACCACGGTGGAGG+CGG | 0.574574 | 5.1:-66575973 | MS.gene81680:CDS |
| GGTGGATACAACAATGGCGG+TGG | 0.583166 | 5.1:-66576156 | MS.gene81680:CDS |
| GGCGGTGGTGGTTACAATGG+TGG | 0.594919 | 5.1:-66576198 | MS.gene81680:CDS |
| GGTTGTAACCGCCTCCACCA+TGG | 0.597627 | 5.1:+66575986 | None:intergenic |
| CATGGTGGAGGTGGTTACAA+TGG | 0.597788 | 5.1:-66576021 | MS.gene81680:CDS |
| GGTGGATACAACAATGGTGG+AGG | 0.598383 | 5.1:-66576075 | MS.gene81680:CDS |
| GGTGGATACAACAATGGTGG+AGG | 0.598383 | 5.1:-66576117 | MS.gene81680:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609526 | 5.1:-66576195 | MS.gene81680:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.613370 | 5.1:-66576018 | MS.gene81680:CDS |
| AGCAGCACCTGCCATGGCAA+TGG | 0.620983 | 5.1:+66575920 | None:intergenic |
| GGTGGTGGTGGTTACAACCA+TGG | 0.640243 | 5.1:-66576039 | MS.gene81680:CDS |
| GGTGGAGGCGGTTACAACCA+CGG | 0.641005 | 5.1:-66575982 | MS.gene81680:CDS |
| GGTTGCCAATACCATTGCCA+TGG | 0.642022 | 5.1:-66575931 | MS.gene81680:CDS |
| GTCCCTAGCTGAGACTTCTG+AGG | 0.645915 | 5.1:+66576432 | None:intergenic |
| CATTGTAACCACCACCGCCG+TGG | 0.646466 | 5.1:+66576202 | None:intergenic |
| GTAAACGATGCCAAATATGG+TGG | 0.647144 | 5.1:-66576234 | MS.gene81680:CDS |
| CATTGTAACCACCTCCACCA+TGG | 0.649002 | 5.1:+66576022 | None:intergenic |
| TAAGAAGAACCATAGCCAAG+AGG | 0.664133 | 5.1:+66576458 | None:intergenic |
| GGTGGTGGTGGATACAACAA+TGG | 0.666044 | 5.1:-66576162 | MS.gene81680:CDS |
| GGTGGAGGCGGTTACAACCA+CGG | 0.674017 | 5.1:-66575961 | MS.gene81680:CDS |
| GGTGGTGGATACAACAATGG+TGG | 0.676280 | 5.1:-66576078 | MS.gene81680:CDS |
| GGTGGTGGATACAACAATGG+TGG | 0.676280 | 5.1:-66576120 | MS.gene81680:CDS |
| ATTGGCAACCGCCTCCACCG+TGG | 0.678280 | 5.1:+66575944 | None:intergenic |
| GGTTGTAACCGCCTCCACCG+TGG | 0.681332 | 5.1:+66575965 | None:intergenic |
| GGTGGTGGTGGATACAACAA+TGG | 0.684345 | 5.1:-66576081 | MS.gene81680:CDS |
| GGTGGTGGTGGATACAACAA+TGG | 0.684345 | 5.1:-66576123 | MS.gene81680:CDS |
| TATGGTGGAGGTTACAACCA+CGG | 0.702708 | 5.1:-66576219 | MS.gene81680:CDS |
| AATGGTGGAGGTTACAACCA+CGG | 0.710899 | 5.1:-66576183 | MS.gene81680:CDS |
| TGTTGTATCCACCACCACCG+TGG | 0.714982 | 5.1:+66576085 | None:intergenic |
| TGTTGTATCCACCACCACCG+TGG | 0.714982 | 5.1:+66576127 | None:intergenic |
| TGTTGTATCCACCACCACCG+TGG | 0.714982 | 5.1:+66576166 | None:intergenic |
| GGTGGTGGCTACAACCATGG+TGG | 0.723784 | 5.1:-66576000 | MS.gene81680:CDS |
| GGTGGAGGTGGATACAACCA+CGG | 0.728168 | 5.1:-66576060 | MS.gene81680:CDS |
| GGTGGAGGTGGATACAACCA+CGG | 0.728168 | 5.1:-66576102 | MS.gene81680:CDS |
| GGTGGTGGTTACAACCATGG+TGG | 0.730633 | 5.1:-66576036 | MS.gene81680:CDS |
| AATGGCGGTGGATACAACCA+CGG | 0.732761 | 5.1:-66576144 | MS.gene81680:CDS |
| GGTGGTGGATACAACAATGG+CGG | 0.734675 | 5.1:-66576159 | MS.gene81680:CDS |
| GGTTGTAACCACCACCACCG+TGG | 0.740537 | 5.1:+66576043 | None:intergenic |
| GGCGGTGGATACAACCACGG+TGG | 0.764343 | 5.1:-66576141 | MS.gene81680:CDS |
| GGAGGCGGTTACAACCACGG+TGG | 0.788813 | 5.1:-66575979 | MS.gene81680:CDS |
| GGAGGCGGTTACAACCACGG+TGG | 0.797498 | 5.1:-66575958 | MS.gene81680:CDS |
| GGTGGAGGTTACAACCACGG+TGG | 0.812517 | 5.1:-66576180 | MS.gene81680:CDS |
| GGAGGTGGATACAACCACGG+TGG | 0.823069 | 5.1:-66576057 | MS.gene81680:CDS |
| GGAGGTGGATACAACCACGG+TGG | 0.823069 | 5.1:-66576099 | MS.gene81680:CDS |
| GGTGGAGGTTACAACCACGG+CGG | 0.825418 | 5.1:-66576216 | MS.gene81680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATATATAGCTCACCCTTTT+TGG | + | chr5.1:66575976-66575995 | None:intergenic | 30.0% |
| AACTACCTTTGATGCCAAAA+AGG | - | chr5.1:66575959-66575978 | MS.gene81680:CDS | 35.0% | |
| ACTACCTTTGATGCCAAAAA+GGG | - | chr5.1:66575960-66575979 | MS.gene81680:CDS | 35.0% | |
| GAAGTAAACGATGCCAAATA+TGG | - | chr5.1:66576123-66576142 | MS.gene81680:CDS | 35.0% | |
| AGAAAAGCAATCCTCATCCT+AGG | - | chr5.1:66575879-66575898 | MS.gene81680:CDS | 40.0% | |
| GTAAACGATGCCAAATATGG+TGG | - | chr5.1:66576126-66576145 | MS.gene81680:CDS | 40.0% | |
| GTTGTAACCTCCACCATATT+TGG | + | chr5.1:66576139-66576158 | None:intergenic | 40.0% | |
| TAAGAAGAACCATAGCCAAG+AGG | + | chr5.1:66575905-66575924 | None:intergenic | 40.0% | |
| ! | ATTTGTTGCCATGCAAGCTA+AGG | - | chr5.1:66576473-66576492 | MS.gene81680:CDS | 40.0% |
| AACGATGCCAAATATGGTGG+AGG | - | chr5.1:66576129-66576148 | MS.gene81680:CDS | 45.0% | |
| TTCCTCAGAAGTCTCAGCTA+GGG | - | chr5.1:66575926-66575945 | MS.gene81680:CDS | 45.0% | |
| TTTCCTCAGAAGTCTCAGCT+AGG | - | chr5.1:66575925-66575944 | MS.gene81680:CDS | 45.0% | |
| ! | AATGGTGGAGGTTACAACCA+CGG | - | chr5.1:66576177-66576196 | MS.gene81680:CDS | 45.0% |
| ! | TATGGTGGAGGTTACAACCA+CGG | - | chr5.1:66576141-66576160 | MS.gene81680:CDS | 45.0% |
| !! | AGTGTTGTCCTTAGCTTGCA+TGG | + | chr5.1:66576484-66576503 | None:intergenic | 45.0% |
| !! | CTCACCCTTTTTGGCATCAA+AGG | + | chr5.1:66575967-66575986 | None:intergenic | 45.0% |
| AATCCTCATCCTAGGCCTCT+TGG | - | chr5.1:66575887-66575906 | MS.gene81680:CDS | 50.0% | |
| AATGGCGGTGGATACAACCA+CGG | - | chr5.1:66576216-66576235 | MS.gene81680:CDS | 50.0% | |
| ACCTGCCATGGCAATGGTAT+TGG | + | chr5.1:66576437-66576456 | None:intergenic | 50.0% | |
| CATTGTAACCACCTCCACCA+TGG | + | chr5.1:66576341-66576360 | None:intergenic | 50.0% | |
| GGTGGATACAACAATGGTGG+AGG | - | chr5.1:66576243-66576262 | MS.gene81680:CDS | 50.0% | |
| GGTTGCCAATACCATTGCCA+TGG | - | chr5.1:66576429-66576448 | MS.gene81680:CDS | 50.0% | |
| ! | CATGGTGGAGGTGGTTACAA+TGG | - | chr5.1:66576339-66576358 | MS.gene81680:intron | 50.0% |
| ! | GGATACAACAATGGTGGAGG+TGG | - | chr5.1:66576246-66576265 | MS.gene81680:CDS | 50.0% |
| !! | AATGGTGGTGGCTACAACCA+TGG | - | chr5.1:66576357-66576376 | MS.gene81680:intron | 50.0% |
| !! | GGTGGTGGATACAACAATGG+CGG | - | chr5.1:66576201-66576220 | MS.gene81680:CDS | 50.0% |
| !! | GGTGGTGGATACAACAATGG+TGG | - | chr5.1:66576201-66576220 | MS.gene81680:CDS | 50.0% |
| !! | GGTGGTGGTGGATACAACAA+TGG | - | chr5.1:66576198-66576217 | MS.gene81680:CDS | 50.0% |
| CATCCTAGGCCTCTTGGCTA+TGG | - | chr5.1:66575893-66575912 | MS.gene81680:CDS | 55.0% | |
| GAACCATAGCCAAGAGGCCT+AGG | + | chr5.1:66575899-66575918 | None:intergenic | 55.0% | |
| GCCAATACCATTGCCATGGC+AGG | - | chr5.1:66576433-66576452 | MS.gene81680:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5.1:66576345-66576364 | MS.gene81680:intron | 55.0% | |
| GGTGGAGGTGGATACAACCA+CGG | - | chr5.1:66576258-66576277 | MS.gene81680:CDS | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5.1:66576342-66576361 | MS.gene81680:intron | 55.0% | |
| GGTGGATACAACAATGGCGG+TGG | - | chr5.1:66576204-66576223 | MS.gene81680:CDS | 55.0% | |
| GGTGGTTACAACCATGGTGG+AGG | - | chr5.1:66576327-66576346 | MS.gene81680:intron | 55.0% | |
| GTCCCTAGCTGAGACTTCTG+AGG | + | chr5.1:66575931-66575950 | None:intergenic | 55.0% | |
| TAGCCAAGAGGCCTAGGATG+AGG | + | chr5.1:66575893-66575912 | None:intergenic | 55.0% | |
| TGTTGTATCCACCACCACCG+TGG | + | chr5.1:66576197-66576216 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTTACAACCATGG+TGG | - | chr5.1:66576324-66576343 | MS.gene81680:intron | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5.1:66576165-66576184 | MS.gene81680:CDS | 55.0% |
| ! | GGTTACAACCATGGTGGAGG+TGG | - | chr5.1:66576330-66576349 | MS.gene81680:intron | 55.0% |
| !! | GGTGGTGGTGGTTACAACCA+TGG | - | chr5.1:66576321-66576340 | MS.gene81680:intron | 55.0% |
| AGCAGCACCTGCCATGGCAA+TGG | + | chr5.1:66576443-66576462 | None:intergenic | 60.0% | |
| CATGTGAGCAGCACCTGCCA+TGG | + | chr5.1:66576449-66576468 | None:intergenic | 60.0% | |
| CATTGTAACCACCACCGCCG+TGG | + | chr5.1:66576161-66576180 | None:intergenic | 60.0% | |
| GGAGGTGGATACAACCACGG+TGG | - | chr5.1:66576261-66576280 | MS.gene81680:intron | 60.0% | |
| GGAGGTTACAACCACGGTGG+TGG | - | chr5.1:66576183-66576202 | MS.gene81680:CDS | 60.0% | |
| GGTGGAGGCGGTTACAACCA+CGG | - | chr5.1:66576378-66576397 | MS.gene81680:intron | 60.0% | |
| GGTGGAGGTTACAACCACGG+CGG | - | chr5.1:66576144-66576163 | MS.gene81680:CDS | 60.0% | |
| GGTGGAGGTTACAACCACGG+TGG | - | chr5.1:66576144-66576163 | MS.gene81680:CDS | 60.0% | |
| GGTGGATACAACCACGGTGG+TGG | - | chr5.1:66576222-66576241 | MS.gene81680:CDS | 60.0% | |
| GGTGGCTACAACCATGGTGG+AGG | - | chr5.1:66576363-66576382 | MS.gene81680:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+CGG | - | chr5.1:66576387-66576406 | MS.gene81680:intron | 60.0% | |
| GGTTGTAACCACCACCACCG+TGG | + | chr5.1:66576320-66576339 | None:intergenic | 60.0% | |
| GGTTGTAACCGCCTCCACCA+TGG | + | chr5.1:66576377-66576396 | None:intergenic | 60.0% | |
| ! | CACGGCGGTGGTGGTTACAA+TGG | - | chr5.1:66576159-66576178 | MS.gene81680:CDS | 60.0% |
| ! | GGATACAACCACGGTGGTGG+TGG | - | chr5.1:66576225-66576244 | MS.gene81680:CDS | 60.0% |
| ! | GGCGGTGGTGGTTACAATGG+TGG | - | chr5.1:66576162-66576181 | MS.gene81680:CDS | 60.0% |
| ! | GGCTACAACCATGGTGGAGG+CGG | - | chr5.1:66576366-66576385 | MS.gene81680:intron | 60.0% |
| ! | GGTGGTGGCTACAACCATGG+TGG | - | chr5.1:66576360-66576379 | MS.gene81680:intron | 60.0% |
| ! | GGTTACAACCACGGTGGTGG+TGG | - | chr5.1:66576186-66576205 | MS.gene81680:CDS | 60.0% |
| ATTGGCAACCGCCTCCACCG+TGG | + | chr5.1:66576419-66576438 | None:intergenic | 65.0% | |
| GGAGGCGGTTACAACCACGG+TGG | - | chr5.1:66576381-66576400 | MS.gene81680:intron | 65.0% | |
| GGAGGTTACAACCACGGCGG+TGG | - | chr5.1:66576147-66576166 | MS.gene81680:CDS | 65.0% | |
| GGCGGTGGATACAACCACGG+TGG | - | chr5.1:66576219-66576238 | MS.gene81680:CDS | 65.0% | |
| GGCGGTTACAACCACGGTGG+AGG | - | chr5.1:66576384-66576403 | MS.gene81680:intron | 65.0% | |
| GGTTACAACCACGGCGGTGG+TGG | - | chr5.1:66576150-66576169 | MS.gene81680:CDS | 65.0% | |
| GGTTGTAACCGCCTCCACCG+TGG | + | chr5.1:66576398-66576417 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 66575870 | 66576512 | 66575870 | ID=MS.gene81680 |
| chr5.1 | mRNA | 66575870 | 66576512 | 66575870 | ID=MS.gene81680.t1;Parent=MS.gene81680 |
| chr5.1 | exon | 66576401 | 66576512 | 66576401 | ID=MS.gene81680.t1.exon1;Parent=MS.gene81680.t1 |
| chr5.1 | CDS | 66576401 | 66576512 | 66576401 | ID=cds.MS.gene81680.t1;Parent=MS.gene81680.t1 |
| chr5.1 | exon | 66575870 | 66576279 | 66575870 | ID=MS.gene81680.t1.exon2;Parent=MS.gene81680.t1 |
| chr5.1 | CDS | 66575870 | 66576279 | 66575870 | ID=cds.MS.gene81680.t1;Parent=MS.gene81680.t1 |
| Gene Sequence |
| Protein sequence |
