Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82221.t1 | RHN59411.1 | 87.8 | 115 | 14 | 0 | 3 | 117 | 57 | 171 | 9.40E-47 | 196.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82221.t1 | A0AT31 | 75.0 | 116 | 29 | 0 | 1 | 116 | 1 | 116 | 7.8e-42 | 171.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82221.t1 | A0A396I3M7 | 87.8 | 115 | 14 | 0 | 3 | 117 | 57 | 171 | 6.8e-47 | 196.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene82221 | 0.833905 | 4.08E-56 | -1.69E-46 |
| MS.gene049346 | MS.gene82221 | 0.822677 | 2.08E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene82221 | 0.817464 | 3.25E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene82221 | 0.844116 | 9.22E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene82221 | 0.824701 | 7.00E-54 | -1.69E-46 |
| MS.gene050404 | MS.gene82221 | 0.821548 | 3.81E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene82221 | 0.826287 | 2.95E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene82221 | 0.861147 | 1.26E-63 | -1.69E-46 |
| MS.gene052340 | MS.gene82221 | 0.863508 | 2.37E-64 | -1.69E-46 |
| MS.gene053073 | MS.gene82221 | 0.836492 | 9.07E-57 | -1.69E-46 |
| MS.gene053209 | MS.gene82221 | 0.845364 | 4.25E-59 | -1.69E-46 |
| MS.gene053557 | MS.gene82221 | 0.861251 | 1.17E-63 | -1.69E-46 |
| MS.gene053928 | MS.gene82221 | 0.834524 | 2.85E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene82221 | 0.822869 | 1.88E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene82221 | 0.802982 | 4.33E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene82221 | 0.8119 | 5.56E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene82221 | 0.827542 | 1.48E-54 | -1.69E-46 |
| MS.gene057396 | MS.gene82221 | 0.806492 | 8.01E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene82221 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene82221 | 0.821229 | 4.51E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene82221 | 0.806024 | 1.01E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene82221 | 0.810335 | 1.21E-50 | -1.69E-46 |
| MS.gene058276 | MS.gene82221 | 0.814185 | 1.75E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene82221 | 0.819547 | 1.10E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene82221 | 0.813622 | 2.33E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene82221 | 0.85583 | 4.85E-62 | -1.69E-46 |
| MS.gene059974 | MS.gene82221 | 0.829133 | 6.10E-55 | -1.69E-46 |
| MS.gene06037 | MS.gene82221 | 0.822239 | 2.63E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene82221 | 0.804404 | 2.20E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene82221 | 0.859787 | 3.25E-63 | -1.69E-46 |
| MS.gene061112 | MS.gene82221 | 0.823333 | 1.47E-53 | -1.69E-46 |
| MS.gene061159 | MS.gene82221 | 0.816604 | 5.08E-52 | -1.69E-46 |
| MS.gene061265 | MS.gene82221 | 0.818759 | 1.66E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82221 | MS.gene82219 | PPI |
| MS.gene53311 | MS.gene82221 | PPI |
| MS.gene82221 | MS.gene76747 | PPI |
| MS.gene53305 | MS.gene82221 | PPI |
| MS.gene82221 | MS.gene82253 | PPI |
| MS.gene82221 | MS.gene76710 | PPI |
| MS.gene82256 | MS.gene82221 | PPI |
| MS.gene48835 | MS.gene82221 | PPI |
| MS.gene82221 | MS.gene48796 | PPI |
| MS.gene76713 | MS.gene82221 | PPI |
| MS.gene77025 | MS.gene82221 | PPI |
| MS.gene82221 | MS.gene48829 | PPI |
| MS.gene82221 | MS.gene76745 | PPI |
| MS.gene53312 | MS.gene82221 | PPI |
| MS.gene77022 | MS.gene82221 | PPI |
| MS.gene82221 | MS.gene82222 | PPI |
| MS.gene48828 | MS.gene82221 | PPI |
| MS.gene82221 | MS.gene53309 | PPI |
| MS.gene76705 | MS.gene82221 | PPI |
| MS.gene76710 | MS.gene82221 | PPI |
| MS.gene48831 | MS.gene82221 | PPI |
| MS.gene82221 | MS.gene48797 | PPI |
| MS.gene82221 | MS.gene76714 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82221.t1 | MTR_4g027800 | 86.087 | 115 | 16 | 0 | 3 | 117 | 2 | 116 | 1.19e-66 | 197 |
| MS.gene82221.t1 | MTR_4g027840 | 86.842 | 114 | 15 | 0 | 3 | 116 | 2 | 115 | 1.41e-66 | 197 |
| MS.gene82221.t1 | MTR_4g428370 | 82.609 | 115 | 20 | 0 | 3 | 117 | 59 | 173 | 1.59e-64 | 193 |
| MS.gene82221.t1 | MTR_4g029390 | 64.655 | 116 | 38 | 2 | 3 | 116 | 2 | 116 | 2.08e-46 | 145 |
| MS.gene82221.t1 | MTR_4g029350 | 64.655 | 116 | 38 | 2 | 3 | 116 | 2 | 116 | 2.82e-45 | 142 |
| MS.gene82221.t1 | MTR_4g029210 | 50.000 | 110 | 55 | 0 | 4 | 113 | 3 | 112 | 7.01e-32 | 108 |
| MS.gene82221.t1 | MTR_7g072930 | 49.153 | 118 | 55 | 3 | 1 | 114 | 1 | 117 | 1.57e-31 | 109 |
| MS.gene82221.t1 | MTR_4g028190 | 48.305 | 118 | 56 | 3 | 1 | 113 | 1 | 118 | 1.71e-30 | 105 |
| MS.gene82221.t1 | MTR_7g073150 | 47.458 | 118 | 57 | 4 | 1 | 114 | 1 | 117 | 2.90e-29 | 102 |
| MS.gene82221.t1 | MTR_7g072830 | 40.833 | 120 | 67 | 2 | 1 | 116 | 1 | 120 | 1.70e-27 | 98.2 |
| MS.gene82221.t1 | MTR_7g073170 | 44.538 | 119 | 60 | 4 | 1 | 115 | 1 | 117 | 4.10e-27 | 97.1 |
| MS.gene82221.t1 | MTR_7g072730 | 40.678 | 118 | 66 | 3 | 1 | 114 | 1 | 118 | 8.60e-26 | 95.1 |
| MS.gene82221.t1 | MTR_4g028180 | 40.678 | 118 | 63 | 3 | 6 | 116 | 9 | 126 | 5.79e-25 | 91.7 |
| MS.gene82221.t1 | MTR_4g028310 | 38.983 | 118 | 69 | 1 | 3 | 117 | 2 | 119 | 2.57e-24 | 90.5 |
| MS.gene82221.t1 | MTR_2g062600 | 42.241 | 116 | 64 | 3 | 1 | 115 | 1 | 114 | 6.67e-24 | 88.6 |
| MS.gene82221.t1 | MTR_7g073120 | 40.171 | 117 | 65 | 2 | 1 | 112 | 1 | 117 | 8.06e-23 | 87.0 |
| MS.gene82221.t1 | MTR_7g072900 | 46.610 | 118 | 56 | 5 | 1 | 113 | 1 | 116 | 1.29e-22 | 85.5 |
| MS.gene82221.t1 | MTR_7g072993 | 45.763 | 118 | 57 | 4 | 1 | 112 | 1 | 117 | 2.04e-22 | 85.5 |
| MS.gene82221.t1 | MTR_7g072960 | 41.880 | 117 | 51 | 4 | 1 | 114 | 1 | 103 | 6.44e-21 | 81.6 |
| MS.gene82221.t1 | MTR_4g028250 | 39.316 | 117 | 68 | 2 | 3 | 116 | 2 | 118 | 5.03e-20 | 79.0 |
| MS.gene82221.t1 | MTR_3g467100 | 36.607 | 112 | 70 | 1 | 6 | 116 | 3 | 114 | 7.08e-20 | 78.6 |
| MS.gene82221.t1 | MTR_7g072980 | 40.678 | 118 | 64 | 4 | 1 | 113 | 1 | 117 | 2.05e-19 | 78.2 |
| MS.gene82221.t1 | MTR_1g040335 | 43.697 | 119 | 62 | 3 | 1 | 115 | 1 | 118 | 7.60e-19 | 75.9 |
| MS.gene82221.t1 | MTR_7g073130 | 41.026 | 117 | 63 | 5 | 1 | 113 | 1 | 115 | 1.39e-18 | 75.5 |
| MS.gene82221.t1 | MTR_7g073100 | 40.336 | 119 | 62 | 3 | 1 | 113 | 1 | 116 | 4.47e-18 | 74.7 |
| MS.gene82221.t1 | MTR_7g073060 | 40.000 | 120 | 67 | 4 | 1 | 116 | 1 | 119 | 1.26e-17 | 72.8 |
| MS.gene82221.t1 | MTR_7g451500 | 36.957 | 92 | 57 | 1 | 25 | 115 | 7 | 98 | 5.16e-17 | 70.9 |
| MS.gene82221.t1 | MTR_4g028360 | 35.398 | 113 | 70 | 3 | 5 | 115 | 1 | 112 | 1.72e-16 | 70.1 |
| MS.gene82221.t1 | MTR_7g072810 | 41.379 | 116 | 58 | 4 | 1 | 112 | 1 | 110 | 3.06e-16 | 69.3 |
| MS.gene82221.t1 | MTR_7g073030 | 37.069 | 116 | 68 | 4 | 1 | 112 | 1 | 115 | 1.42e-14 | 65.9 |
| MS.gene82221.t1 | MTR_3g056640 | 35.398 | 113 | 65 | 4 | 10 | 116 | 12 | 122 | 5.90e-14 | 63.5 |
| MS.gene82221.t1 | MTR_3g046515 | 34.821 | 112 | 67 | 4 | 4 | 111 | 10 | 119 | 3.08e-13 | 61.6 |
| MS.gene82221.t1 | MTR_1g040330 | 40.496 | 121 | 65 | 5 | 1 | 116 | 1 | 119 | 5.87e-13 | 60.8 |
| MS.gene82221.t1 | MTR_3g046530 | 31.356 | 118 | 73 | 4 | 5 | 116 | 7 | 122 | 7.45e-13 | 60.8 |
| MS.gene82221.t1 | MTR_3g464130 | 37.778 | 90 | 51 | 3 | 26 | 111 | 18 | 106 | 2.60e-12 | 58.9 |
| MS.gene82221.t1 | MTR_3g046540 | 33.043 | 115 | 67 | 5 | 5 | 111 | 7 | 119 | 5.02e-12 | 58.5 |
| MS.gene82221.t1 | MTR_7g072760 | 31.967 | 122 | 77 | 3 | 1 | 116 | 1 | 122 | 6.85e-12 | 58.2 |
| MS.gene82221.t1 | MTR_3g464110 | 40.244 | 82 | 44 | 3 | 34 | 111 | 92 | 172 | 3.03e-11 | 57.4 |
| MS.gene82221.t1 | MTR_7g072987 | 47.059 | 68 | 33 | 2 | 26 | 91 | 57 | 123 | 7.95e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82221.t1 | AT2G38540 | 61.667 | 120 | 40 | 6 | 1 | 116 | 1 | 118 | 4.35e-38 | 124 |
| MS.gene82221.t1 | AT5G59320 | 56.410 | 117 | 48 | 2 | 1 | 116 | 1 | 115 | 4.74e-38 | 124 |
| MS.gene82221.t1 | AT5G59310 | 56.897 | 116 | 46 | 2 | 1 | 116 | 1 | 112 | 4.92e-37 | 122 |
| MS.gene82221.t1 | AT2G38530 | 59.664 | 119 | 44 | 4 | 1 | 116 | 1 | 118 | 1.11e-34 | 116 |
| MS.gene82221.t1 | AT3G51600 | 51.261 | 119 | 54 | 4 | 1 | 116 | 1 | 118 | 4.09e-30 | 104 |
| MS.gene82221.t1 | AT3G51590 | 44.828 | 116 | 62 | 2 | 1 | 115 | 1 | 115 | 7.83e-28 | 99.0 |
| MS.gene82221.t1 | AT2G15050 | 43.443 | 122 | 63 | 4 | 1 | 116 | 1 | 122 | 1.38e-27 | 98.6 |
| MS.gene82221.t1 | AT2G15050 | 43.333 | 120 | 62 | 4 | 1 | 114 | 1 | 120 | 3.84e-26 | 94.7 |
| MS.gene82221.t1 | AT4G33355 | 42.982 | 114 | 64 | 1 | 3 | 116 | 7 | 119 | 1.30e-25 | 93.2 |
| MS.gene82221.t1 | AT2G15050 | 43.363 | 113 | 60 | 3 | 1 | 109 | 1 | 113 | 2.50e-25 | 92.4 |
| MS.gene82221.t1 | AT5G01870 | 43.860 | 114 | 56 | 4 | 10 | 116 | 4 | 116 | 4.83e-25 | 91.7 |
| MS.gene82221.t1 | AT4G33355 | 43.636 | 110 | 61 | 1 | 3 | 112 | 7 | 115 | 5.29e-25 | 91.7 |
| MS.gene82221.t1 | AT3G08770 | 45.361 | 97 | 49 | 3 | 23 | 116 | 18 | 113 | 3.72e-20 | 79.3 |
| MS.gene82221.t1 | AT3G08770 | 46.237 | 93 | 46 | 3 | 23 | 112 | 18 | 109 | 3.46e-19 | 77.0 |
| MS.gene82221.t1 | AT2G18370 | 36.364 | 110 | 68 | 2 | 7 | 115 | 7 | 115 | 5.53e-18 | 73.6 |
| MS.gene82221.t1 | AT2G15325 | 29.752 | 121 | 79 | 3 | 1 | 116 | 1 | 120 | 9.88e-13 | 60.5 |
Find 32 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCTGCTGGTGCTATTTC+TGG | 0.136175 | 4.2:+75490141 | MS.gene82221:CDS |
| CCATGCATTGCATATCTTAG+AGG | 0.320070 | 4.2:+75490018 | MS.gene82221:CDS |
| GGCGCAGCTTCTTCTCTTCC+TGG | 0.339122 | 4.2:+75490174 | MS.gene82221:CDS |
| GCTATTTCTGGTTTGAATAC+AGG | 0.359485 | 4.2:+75490153 | MS.gene82221:CDS |
| TTGCAAGCAGCCTGGCGGTC+AGG | 0.369068 | 4.2:-75490108 | None:intergenic |
| CCATCTCCAGCATGCTGTGC+TGG | 0.375274 | 4.2:+75490051 | MS.gene82221:CDS |
| GTCAGGCGTGGTGGTGGCGG+CGG | 0.430334 | 4.2:-75490091 | None:intergenic |
| GCGGTCAGGCGTGGTGGTGG+CGG | 0.445777 | 4.2:-75490094 | None:intergenic |
| CTGGCGGTCAGGCGTGGTGG+TGG | 0.447269 | 4.2:-75490097 | None:intergenic |
| CACCACCACGCCTGACCGCC+AGG | 0.460254 | 4.2:+75490098 | MS.gene82221:CDS |
| GTGCATGATTGTTGCACCTA+TGG | 0.467928 | 4.2:+75489951 | MS.gene82221:CDS |
| AGCAGCCTGGCGGTCAGGCG+TGG | 0.477818 | 4.2:-75490103 | None:intergenic |
| TTCACTCCAGCACAGCATGC+TGG | 0.485039 | 4.2:-75490057 | None:intergenic |
| AACTGCTTGAAAAGTGCTGC+TGG | 0.486030 | 4.2:+75490129 | MS.gene82221:CDS |
| TCAAGCAGTTGCAAGCAGCC+TGG | 0.486116 | 4.2:-75490116 | None:intergenic |
| ATGTTAACGCCACATTTGCC+AGG | 0.486943 | 4.2:-75490192 | None:intergenic |
| GCATATCTTAGAGGTGGTGC+TGG | 0.504129 | 4.2:+75490027 | MS.gene82221:CDS |
| GTGGAGGTACTGATCTTGTA+AGG | 0.508470 | 4.2:-75490216 | None:intergenic |
| TTGTCATGCTTACAGCATCA+GGG | 0.542932 | 4.2:+75490618 | MS.gene82221:intron |
| CCAGCACAGCATGCTGGAGA+TGG | 0.550113 | 4.2:-75490051 | None:intergenic |
| AACATACGTAGCACAGTTGG+TGG | 0.554041 | 4.2:-75490235 | None:intergenic |
| AGCCTGGCGGTCAGGCGTGG+TGG | 0.562191 | 4.2:-75490100 | None:intergenic |
| AACAATGGCAAGCAGCATGA+AGG | 0.575179 | 4.2:+75489906 | None:intergenic |
| GAGATTGCAGCATCTGCCAT+AGG | 0.577723 | 4.2:-75489967 | None:intergenic |
| TCTTCTCTTCCTGGCAAATG+TGG | 0.581280 | 4.2:+75490183 | MS.gene82221:CDS |
| CCTCTAAGATATGCAATGCA+TGG | 0.588805 | 4.2:-75490018 | None:intergenic |
| ATAAACATACGTAGCACAGT+TGG | 0.615719 | 4.2:-75490238 | None:intergenic |
| TGCATTGCATATCTTAGAGG+TGG | 0.623803 | 4.2:+75490021 | MS.gene82221:CDS |
| ATACGTAGCACAGTTGGTGG+AGG | 0.639269 | 4.2:-75490232 | None:intergenic |
| AGCAGTTGCAAGCAGCCTGG+CGG | 0.651296 | 4.2:-75490113 | None:intergenic |
| GCAGATGCTGCAATCTCATG+TGG | 0.654132 | 4.2:+75489973 | MS.gene82221:CDS |
| ATCTCATGTGGACAAGTGAG+TGG | 0.724614 | 4.2:+75489985 | MS.gene82221:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATCATTCTTTTAATTTT+AGG | + | chr4.2:75490378-75490397 | MS.gene82221:intron | 10.0% |
| !!! | TTATATTATTCAATGTTTTT+GGG | + | chr4.2:75490507-75490526 | MS.gene82221:intron | 10.0% |
| !!! | TTTATATTATTCAATGTTTT+TGG | + | chr4.2:75490506-75490525 | MS.gene82221:intron | 10.0% |
| !!! | AAAATTTAGTTGTTTAACTT+TGG | - | chr4.2:75490335-75490354 | None:intergenic | 15.0% |
| !!! | TATAAATTCATTTTTGCTGA+AGG | + | chr4.2:75490451-75490470 | MS.gene82221:intron | 20.0% |
| !! | TAGAAAATTAATCACTGACT+AGG | + | chr4.2:75490583-75490602 | MS.gene82221:intron | 25.0% |
| !!! | CTACGAATCTACTTTTTTAT+TGG | + | chr4.2:75490551-75490570 | MS.gene82221:intron | 25.0% |
| !!! | TGGGAATTTTTTTGAGATTA+AGG | + | chr4.2:75490526-75490545 | MS.gene82221:intron | 25.0% |
| !!! | TTTTATCCTCATTTTTCAAG+TGG | + | chr4.2:75490281-75490300 | MS.gene82221:intron | 25.0% |
| ! | TTACCATTTGAGATTGTTGA+GGG | + | chr4.2:75490355-75490374 | MS.gene82221:intron | 30.0% |
| ! | TTTACCATTTGAGATTGTTG+AGG | + | chr4.2:75490354-75490373 | MS.gene82221:intron | 30.0% |
| ACTAGACCACTTGAAAAATG+AGG | - | chr4.2:75490290-75490309 | None:intergenic | 35.0% | |
| ATAAACATACGTAGCACAGT+TGG | - | chr4.2:75490241-75490260 | None:intergenic | 35.0% | |
| TTACCCTCAACAATCTCAAA+TGG | - | chr4.2:75490361-75490380 | None:intergenic | 35.0% | |
| !! | GCTATTTCTGGTTTGAATAC+AGG | + | chr4.2:75490153-75490172 | MS.gene82221:CDS | 35.0% |
| CCATGCATTGCATATCTTAG+AGG | + | chr4.2:75490018-75490037 | MS.gene82221:CDS | 40.0% | |
| TGCATTGCATATCTTAGAGG+TGG | + | chr4.2:75490021-75490040 | MS.gene82221:CDS | 40.0% | |
| TTGTCATGCTTACAGCATCA+GGG | + | chr4.2:75490618-75490637 | MS.gene82221:intron | 40.0% | |
| TTTGTCATGCTTACAGCATC+AGG | + | chr4.2:75490617-75490636 | MS.gene82221:intron | 40.0% | |
| !! | CCTCTAAGATATGCAATGCA+TGG | - | chr4.2:75490021-75490040 | None:intergenic | 40.0% |
| AACATACGTAGCACAGTTGG+TGG | - | chr4.2:75490238-75490257 | None:intergenic | 45.0% | |
| ATCTCATGTGGACAAGTGAG+TGG | + | chr4.2:75489985-75490004 | MS.gene82221:CDS | 45.0% | |
| ATGTTAACGCCACATTTGCC+AGG | - | chr4.2:75490195-75490214 | None:intergenic | 45.0% | |
| GTGCATGATTGTTGCACCTA+TGG | + | chr4.2:75489951-75489970 | MS.gene82221:CDS | 45.0% | |
| TCTTCTCTTCCTGGCAAATG+TGG | + | chr4.2:75490183-75490202 | MS.gene82221:CDS | 45.0% | |
| !! | AACTGCTTGAAAAGTGCTGC+TGG | + | chr4.2:75490129-75490148 | MS.gene82221:CDS | 45.0% |
| !! | GTGGAGGTACTGATCTTGTA+AGG | - | chr4.2:75490219-75490238 | None:intergenic | 45.0% |
| GAGATTGCAGCATCTGCCAT+AGG | - | chr4.2:75489970-75489989 | None:intergenic | 50.0% | |
| GCAGATGCTGCAATCTCATG+TGG | + | chr4.2:75489973-75489992 | MS.gene82221:CDS | 50.0% | |
| GCATATCTTAGAGGTGGTGC+TGG | + | chr4.2:75490027-75490046 | MS.gene82221:CDS | 50.0% | |
| !! | AGTGCTGCTGGTGCTATTTC+TGG | + | chr4.2:75490141-75490160 | MS.gene82221:CDS | 50.0% |
| !! | ATACGTAGCACAGTTGGTGG+AGG | - | chr4.2:75490235-75490254 | None:intergenic | 50.0% |
| TCAAGCAGTTGCAAGCAGCC+TGG | - | chr4.2:75490119-75490138 | None:intergenic | 55.0% | |
| TTCACTCCAGCACAGCATGC+TGG | - | chr4.2:75490060-75490079 | None:intergenic | 55.0% | |
| AGCAGTTGCAAGCAGCCTGG+CGG | - | chr4.2:75490116-75490135 | None:intergenic | 60.0% | |
| CCAGCACAGCATGCTGGAGA+TGG | - | chr4.2:75490054-75490073 | None:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGC+TGG | + | chr4.2:75490051-75490070 | MS.gene82221:CDS | 60.0% | |
| GGCGCAGCTTCTTCTCTTCC+TGG | + | chr4.2:75490174-75490193 | MS.gene82221:CDS | 60.0% | |
| TTGCAAGCAGCCTGGCGGTC+AGG | - | chr4.2:75490111-75490130 | None:intergenic | 65.0% | |
| AGCAGCCTGGCGGTCAGGCG+TGG | - | chr4.2:75490106-75490125 | None:intergenic | 75.0% | |
| AGCCTGGCGGTCAGGCGTGG+TGG | - | chr4.2:75490103-75490122 | None:intergenic | 75.0% | |
| CACCACCACGCCTGACCGCC+AGG | + | chr4.2:75490098-75490117 | MS.gene82221:CDS | 75.0% | |
| CTGGCGGTCAGGCGTGGTGG+TGG | - | chr4.2:75490100-75490119 | None:intergenic | 75.0% | |
| !! | GCGGTCAGGCGTGGTGGTGG+CGG | - | chr4.2:75490097-75490116 | None:intergenic | 75.0% |
| !! | GTCAGGCGTGGTGGTGGCGG+CGG | - | chr4.2:75490094-75490113 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 75489910 | 75490645 | 75489910 | ID=MS.gene82221 |
| chr4.2 | mRNA | 75489910 | 75490645 | 75489910 | ID=MS.gene82221.t1;Parent=MS.gene82221 |
| chr4.2 | exon | 75489910 | 75490250 | 75489910 | ID=MS.gene82221.t1.exon1;Parent=MS.gene82221.t1 |
| chr4.2 | CDS | 75489910 | 75490250 | 75489910 | ID=cds.MS.gene82221.t1;Parent=MS.gene82221.t1 |
| chr4.2 | exon | 75490633 | 75490645 | 75490633 | ID=MS.gene82221.t1.exon2;Parent=MS.gene82221.t1 |
| chr4.2 | CDS | 75490633 | 75490645 | 75490633 | ID=cds.MS.gene82221.t1;Parent=MS.gene82221.t1 |
| Gene Sequence |
| Protein sequence |
