Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53311.t1 | RHN59411.1 | 89.7 | 116 | 12 | 0 | 1 | 116 | 56 | 171 | 4.90E-48 | 200.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53311.t1 | A0AT31 | 75.2 | 113 | 28 | 0 | 3 | 115 | 4 | 116 | 3.8e-41 | 168.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53311.t1 | A0A396I3M7 | 89.7 | 116 | 12 | 0 | 1 | 116 | 56 | 171 | 3.6e-48 | 200.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene53311 | 0.825074 | 5.72E-54 | -1.69E-46 |
MS.gene049346 | MS.gene53311 | 0.806646 | 7.44E-50 | -1.69E-46 |
MS.gene049758 | MS.gene53311 | 0.822652 | 2.11E-53 | -1.69E-46 |
MS.gene050099 | MS.gene53311 | 0.802962 | 4.37E-49 | -1.69E-46 |
MS.gene050128 | MS.gene53311 | 0.843532 | 1.32E-58 | -1.69E-46 |
MS.gene050301 | MS.gene53311 | 0.838714 | 2.44E-57 | -1.69E-46 |
MS.gene050397 | MS.gene53311 | 0.818173 | 2.25E-52 | -1.69E-46 |
MS.gene050404 | MS.gene53311 | 0.820144 | 8.01E-53 | -1.69E-46 |
MS.gene050406 | MS.gene53311 | 0.807642 | 4.57E-50 | -1.69E-46 |
MS.gene051360 | MS.gene53311 | 0.801793 | 7.61E-49 | -1.69E-46 |
MS.gene052078 | MS.gene53311 | 0.810527 | 1.10E-50 | -1.69E-46 |
MS.gene052178 | MS.gene53311 | 0.854304 | 1.35E-61 | -1.69E-46 |
MS.gene052188 | MS.gene53311 | 0.82723 | 1.75E-54 | -1.69E-46 |
MS.gene052310 | MS.gene53311 | 0.811081 | 8.37E-51 | -1.69E-46 |
MS.gene052340 | MS.gene53311 | 0.868657 | 5.55E-66 | -1.69E-46 |
MS.gene053073 | MS.gene53311 | 0.825554 | 4.40E-54 | -1.69E-46 |
MS.gene05316 | MS.gene53311 | 0.801477 | 8.84E-49 | -1.69E-46 |
MS.gene053209 | MS.gene53311 | 0.890492 | 9.38E-74 | -1.69E-46 |
MS.gene053557 | MS.gene53311 | 0.876221 | 1.66E-68 | -1.69E-46 |
MS.gene053928 | MS.gene53311 | 0.836504 | 9.00E-57 | -1.69E-46 |
MS.gene054327 | MS.gene53311 | 0.818873 | 1.56E-52 | -1.69E-46 |
MS.gene054349 | MS.gene53311 | 0.801187 | 1.01E-48 | -1.69E-46 |
MS.gene055116 | MS.gene53311 | 0.828503 | 8.67E-55 | -1.69E-46 |
MS.gene055277 | MS.gene53311 | 0.837883 | 4.00E-57 | -1.69E-46 |
MS.gene055422 | MS.gene53311 | 0.801622 | 8.26E-49 | -1.69E-46 |
MS.gene055604 | MS.gene53311 | 0.831311 | 1.79E-55 | -1.69E-46 |
MS.gene056191 | MS.gene53311 | 0.820374 | 7.09E-53 | -1.69E-46 |
MS.gene056410 | MS.gene53311 | 0.827792 | 1.29E-54 | -1.69E-46 |
MS.gene056609 | MS.gene53311 | 0.821984 | 3.02E-53 | -1.69E-46 |
MS.gene056612 | MS.gene53311 | 0.81709 | 3.95E-52 | -1.69E-46 |
MS.gene056659 | MS.gene53311 | 0.803744 | 3.01E-49 | -1.69E-46 |
MS.gene05702 | MS.gene53311 | 0.820958 | 5.21E-53 | -1.69E-46 |
MS.gene057448 | MS.gene53311 | 0.801947 | 7.08E-49 | -1.69E-46 |
MS.gene057450 | MS.gene53311 | 0.810563 | 1.08E-50 | -1.69E-46 |
MS.gene057796 | MS.gene53311 | 0.832673 | 8.27E-56 | -1.69E-46 |
MS.gene058002 | MS.gene53311 | 0.820414 | 6.95E-53 | -1.69E-46 |
MS.gene058082 | MS.gene53311 | 0.826618 | 2.46E-54 | -1.69E-46 |
MS.gene05811 | MS.gene53311 | 0.835859 | 1.31E-56 | -1.69E-46 |
MS.gene058142 | MS.gene53311 | 0.806997 | 6.27E-50 | -1.69E-46 |
MS.gene058365 | MS.gene53311 | 0.813023 | 3.16E-51 | -1.69E-46 |
MS.gene05907 | MS.gene53311 | 0.810581 | 1.07E-50 | -1.69E-46 |
MS.gene059294 | MS.gene53311 | 0.821156 | 4.69E-53 | -1.69E-46 |
MS.gene059518 | MS.gene53311 | 0.828808 | 7.32E-55 | -1.69E-46 |
MS.gene059676 | MS.gene53311 | 0.810361 | 1.20E-50 | -1.69E-46 |
MS.gene059688 | MS.gene53311 | 0.816719 | 4.78E-52 | -1.69E-46 |
MS.gene059692 | MS.gene53311 | 0.85074 | 1.40E-60 | -1.69E-46 |
MS.gene059695 | MS.gene53311 | 0.848458 | 6.05E-60 | -1.69E-46 |
MS.gene05984 | MS.gene53311 | 0.807044 | 6.13E-50 | -1.69E-46 |
MS.gene059894 | MS.gene53311 | 0.863798 | 1.92E-64 | -1.69E-46 |
MS.gene059974 | MS.gene53311 | 0.890253 | 1.16E-73 | -1.69E-46 |
MS.gene060005 | MS.gene53311 | 0.811504 | 6.77E-51 | -1.69E-46 |
MS.gene06037 | MS.gene53311 | 0.844516 | 7.20E-59 | -1.69E-46 |
MS.gene060407 | MS.gene53311 | 0.809521 | 1.82E-50 | -1.69E-46 |
MS.gene060569 | MS.gene53311 | 0.808419 | 3.13E-50 | -1.69E-46 |
MS.gene061049 | MS.gene53311 | 0.859104 | 5.21E-63 | -1.69E-46 |
MS.gene061154 | MS.gene53311 | 0.835945 | 1.25E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene53311 | MS.gene48797 | PPI |
MS.gene53311 | MS.gene77022 | PPI |
MS.gene48831 | MS.gene53311 | PPI |
MS.gene53311 | MS.gene82221 | PPI |
MS.gene53305 | MS.gene53311 | PPI |
MS.gene53311 | MS.gene82219 | PPI |
MS.gene53311 | MS.gene76747 | PPI |
MS.gene48835 | MS.gene53311 | PPI |
MS.gene53311 | MS.gene48831 | PPI |
MS.gene53311 | MS.gene82253 | PPI |
MS.gene76713 | MS.gene53311 | PPI |
MS.gene53311 | MS.gene76710 | PPI |
MS.gene53311 | MS.gene48828 | PPI |
MS.gene53311 | MS.gene48829 | PPI |
MS.gene53311 | MS.gene76745 | PPI |
MS.gene53311 | MS.gene82256 | PPI |
MS.gene53311 | MS.gene82222 | PPI |
MS.gene77025 | MS.gene53311 | PPI |
MS.gene53311 | MS.gene48796 | PPI |
MS.gene53312 | MS.gene53311 | PPI |
MS.gene53311 | MS.gene53309 | PPI |
MS.gene53311 | MS.gene76714 | PPI |
MS.gene53311 | MS.gene76705 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53311.t1 | MTR_4g027800 | 87.931 | 116 | 14 | 0 | 1 | 116 | 1 | 116 | 2.52e-68 | 201 |
MS.gene53311.t1 | MTR_4g027840 | 88.696 | 115 | 13 | 0 | 1 | 115 | 1 | 115 | 2.75e-68 | 201 |
MS.gene53311.t1 | MTR_4g428370 | 84.483 | 116 | 18 | 0 | 1 | 116 | 58 | 173 | 2.25e-66 | 198 |
MS.gene53311.t1 | MTR_4g029390 | 64.957 | 117 | 38 | 2 | 1 | 115 | 1 | 116 | 7.98e-47 | 146 |
MS.gene53311.t1 | MTR_4g029350 | 64.957 | 117 | 38 | 2 | 1 | 115 | 1 | 116 | 1.01e-45 | 144 |
MS.gene53311.t1 | MTR_4g029210 | 47.321 | 112 | 59 | 0 | 1 | 112 | 1 | 112 | 1.64e-30 | 105 |
MS.gene53311.t1 | MTR_7g072930 | 47.321 | 112 | 56 | 2 | 4 | 113 | 7 | 117 | 9.18e-30 | 104 |
MS.gene53311.t1 | MTR_4g028190 | 46.491 | 114 | 59 | 2 | 1 | 112 | 5 | 118 | 1.68e-29 | 103 |
MS.gene53311.t1 | MTR_7g072830 | 39.474 | 114 | 67 | 1 | 4 | 115 | 7 | 120 | 9.82e-27 | 95.9 |
MS.gene53311.t1 | MTR_7g073150 | 45.714 | 105 | 53 | 3 | 12 | 113 | 14 | 117 | 6.37e-26 | 94.4 |
MS.gene53311.t1 | MTR_4g028180 | 40.678 | 118 | 63 | 3 | 5 | 115 | 9 | 126 | 4.59e-25 | 92.0 |
MS.gene53311.t1 | MTR_7g073170 | 41.593 | 113 | 62 | 3 | 4 | 114 | 7 | 117 | 6.13e-25 | 91.7 |
MS.gene53311.t1 | MTR_7g072730 | 39.286 | 112 | 66 | 2 | 4 | 113 | 7 | 118 | 9.28e-25 | 92.4 |
MS.gene53311.t1 | MTR_4g028310 | 39.496 | 119 | 69 | 1 | 1 | 116 | 1 | 119 | 1.73e-24 | 90.9 |
MS.gene53311.t1 | MTR_2g062600 | 41.739 | 115 | 65 | 2 | 1 | 114 | 1 | 114 | 3.46e-24 | 89.4 |
MS.gene53311.t1 | MTR_7g073120 | 38.938 | 113 | 67 | 1 | 1 | 111 | 5 | 117 | 3.86e-22 | 85.5 |
MS.gene53311.t1 | MTR_7g072900 | 44.643 | 112 | 57 | 4 | 4 | 112 | 7 | 116 | 1.63e-21 | 82.8 |
MS.gene53311.t1 | MTR_7g072993 | 43.750 | 112 | 58 | 3 | 4 | 111 | 7 | 117 | 5.19e-21 | 82.0 |
MS.gene53311.t1 | MTR_4g028250 | 38.983 | 118 | 69 | 2 | 1 | 115 | 1 | 118 | 5.53e-20 | 79.0 |
MS.gene53311.t1 | MTR_3g467100 | 36.607 | 112 | 70 | 1 | 5 | 115 | 3 | 114 | 2.16e-19 | 77.0 |
MS.gene53311.t1 | MTR_7g072960 | 38.739 | 111 | 53 | 2 | 4 | 113 | 7 | 103 | 1.73e-18 | 75.5 |
MS.gene53311.t1 | MTR_7g072980 | 38.393 | 112 | 65 | 3 | 4 | 112 | 7 | 117 | 4.84e-18 | 74.3 |
MS.gene53311.t1 | MTR_7g073130 | 38.739 | 111 | 64 | 4 | 4 | 112 | 7 | 115 | 1.01e-17 | 73.2 |
MS.gene53311.t1 | MTR_1g040335 | 41.964 | 112 | 62 | 2 | 5 | 114 | 8 | 118 | 3.91e-17 | 71.6 |
MS.gene53311.t1 | MTR_7g073100 | 38.053 | 113 | 63 | 2 | 4 | 112 | 7 | 116 | 8.88e-17 | 71.2 |
MS.gene53311.t1 | MTR_7g451500 | 36.957 | 92 | 57 | 1 | 24 | 114 | 7 | 98 | 1.51e-16 | 69.3 |
MS.gene53311.t1 | MTR_7g073060 | 37.719 | 114 | 68 | 3 | 4 | 115 | 7 | 119 | 2.53e-16 | 69.3 |
MS.gene53311.t1 | MTR_4g028360 | 34.513 | 113 | 71 | 3 | 4 | 114 | 1 | 112 | 5.07e-16 | 68.9 |
MS.gene53311.t1 | MTR_7g072810 | 40.000 | 110 | 58 | 3 | 4 | 111 | 7 | 110 | 1.24e-15 | 67.8 |
MS.gene53311.t1 | MTR_3g056640 | 34.188 | 117 | 71 | 3 | 4 | 115 | 7 | 122 | 8.06e-15 | 65.9 |
MS.gene53311.t1 | MTR_3g046530 | 32.203 | 118 | 72 | 4 | 4 | 115 | 7 | 122 | 7.25e-14 | 63.2 |
MS.gene53311.t1 | MTR_7g073030 | 35.455 | 110 | 68 | 3 | 4 | 111 | 7 | 115 | 9.78e-14 | 63.9 |
MS.gene53311.t1 | MTR_3g046515 | 33.913 | 115 | 66 | 5 | 4 | 110 | 7 | 119 | 1.15e-13 | 62.8 |
MS.gene53311.t1 | MTR_3g046540 | 33.913 | 115 | 66 | 5 | 4 | 110 | 7 | 119 | 5.52e-13 | 60.8 |
MS.gene53311.t1 | MTR_3g464130 | 37.778 | 90 | 51 | 3 | 25 | 110 | 18 | 106 | 9.47e-13 | 60.1 |
MS.gene53311.t1 | MTR_3g464110 | 40.244 | 82 | 44 | 3 | 33 | 110 | 92 | 172 | 3.10e-11 | 57.4 |
MS.gene53311.t1 | MTR_7g072760 | 30.172 | 116 | 77 | 2 | 4 | 115 | 7 | 122 | 3.92e-11 | 56.2 |
MS.gene53311.t1 | MTR_7g072987 | 47.059 | 68 | 33 | 2 | 25 | 90 | 57 | 123 | 8.13e-11 | 56.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53311.t1 | AT5G59320 | 60.185 | 108 | 41 | 1 | 8 | 115 | 10 | 115 | 1.90e-38 | 125 |
MS.gene53311.t1 | AT5G59310 | 60.185 | 108 | 38 | 2 | 8 | 115 | 10 | 112 | 1.04e-36 | 121 |
MS.gene53311.t1 | AT2G38540 | 61.207 | 116 | 39 | 6 | 4 | 115 | 5 | 118 | 1.42e-36 | 120 |
MS.gene53311.t1 | AT2G38530 | 60.000 | 115 | 42 | 4 | 4 | 115 | 5 | 118 | 9.38e-34 | 114 |
MS.gene53311.t1 | AT3G51600 | 53.043 | 115 | 50 | 4 | 4 | 115 | 5 | 118 | 2.24e-30 | 105 |
MS.gene53311.t1 | AT3G51590 | 47.273 | 110 | 55 | 3 | 6 | 114 | 8 | 115 | 1.35e-28 | 100 |
MS.gene53311.t1 | AT2G15050 | 42.373 | 118 | 62 | 4 | 4 | 115 | 5 | 122 | 2.56e-25 | 92.4 |
MS.gene53311.t1 | AT5G01870 | 43.860 | 114 | 56 | 4 | 9 | 115 | 4 | 116 | 3.62e-25 | 92.0 |
MS.gene53311.t1 | AT4G33355 | 48.387 | 93 | 48 | 0 | 23 | 115 | 27 | 119 | 1.93e-24 | 90.1 |
MS.gene53311.t1 | AT4G33355 | 49.438 | 89 | 45 | 0 | 23 | 111 | 27 | 115 | 7.44e-24 | 88.6 |
MS.gene53311.t1 | AT2G15050 | 42.241 | 116 | 61 | 4 | 4 | 113 | 5 | 120 | 7.84e-24 | 89.0 |
MS.gene53311.t1 | AT2G15050 | 42.202 | 109 | 59 | 3 | 4 | 108 | 5 | 113 | 4.25e-23 | 86.7 |
MS.gene53311.t1 | AT3G08770 | 46.392 | 97 | 48 | 3 | 22 | 115 | 18 | 113 | 2.96e-21 | 82.0 |
MS.gene53311.t1 | AT3G08770 | 47.312 | 93 | 45 | 3 | 22 | 111 | 18 | 109 | 3.18e-20 | 79.3 |
MS.gene53311.t1 | AT2G18370 | 36.364 | 110 | 68 | 2 | 6 | 114 | 7 | 115 | 1.89e-18 | 74.7 |
MS.gene53311.t1 | AT2G15325 | 35.165 | 91 | 56 | 2 | 27 | 115 | 31 | 120 | 1.25e-12 | 60.1 |
Find 32 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTGCTGCTGGTGCTATTTC+TGG | 0.136175 | 4.3:+70942497 | MS.gene53311:CDS |
CCATGCATTGCATATCTTAG+AGG | 0.320070 | 4.3:+70942374 | MS.gene53311:CDS |
GCTATTTCTGGTTTGAATAC+AGG | 0.359485 | 4.3:+70942509 | MS.gene53311:CDS |
CCATCTCCAGCATGCTGTGC+TGG | 0.375274 | 4.3:+70942407 | MS.gene53311:CDS |
ATCTCATGTGGAACAGTAAC+TGG | 0.426922 | 4.3:+70942341 | MS.gene53311:CDS |
TTGCAAGCAGCCTGACGGTC+AGG | 0.429945 | 4.3:-70942464 | None:intergenic |
CACCACCACACCTGACCGTC+AGG | 0.431390 | 4.3:+70942454 | MS.gene53311:CDS |
GTCAGGTGTGGTGGTGGCGG+CGG | 0.461362 | 4.3:-70942447 | None:intergenic |
GTGCATGATTGTTGCACCTA+TGG | 0.467928 | 4.3:+70942307 | MS.gene53311:CDS |
ACGGTCAGGTGTGGTGGTGG+CGG | 0.483285 | 4.3:-70942450 | None:intergenic |
TTCACTCCAGCACAGCATGC+TGG | 0.485039 | 4.3:-70942413 | None:intergenic |
AACTGTTTGAAAAGTGCTGC+TGG | 0.487070 | 4.3:+70942485 | MS.gene53311:CDS |
TCTTCTCTCCCTGGCAAATG+TGG | 0.490642 | 4.3:+70942539 | MS.gene53311:CDS |
GCATATCTTAGAGGTGGTGC+TGG | 0.504129 | 4.3:+70942383 | MS.gene53311:CDS |
GTGGAGGTACTGATCTTGTA+AGG | 0.508470 | 4.3:-70942572 | None:intergenic |
ATGTTAACACCACATTTGCC+AGG | 0.518576 | 4.3:-70942548 | None:intergenic |
CTGACGGTCAGGTGTGGTGG+TGG | 0.525863 | 4.3:-70942453 | None:intergenic |
GGCGCAGCTTCTTCTCTCCC+TGG | 0.542091 | 4.3:+70942530 | MS.gene53311:CDS |
CCAGCACAGCATGCTGGAGA+TGG | 0.550113 | 4.3:-70942407 | None:intergenic |
AACATACGTAGCACAGTTGG+TGG | 0.554041 | 4.3:-70942591 | None:intergenic |
GAAAACAATGGCAAGCATCA+AGG | 0.555387 | 4.3:+70942262 | None:intergenic |
AGCCTGACGGTCAGGTGTGG+TGG | 0.572781 | 4.3:-70942456 | None:intergenic |
TTGTTATACTTACAGCATCA+GGG | 0.577540 | 4.3:+70942972 | MS.gene53311:intron |
GAGATTGCAGCATCTGCCAT+AGG | 0.577723 | 4.3:-70942323 | None:intergenic |
CCTCTAAGATATGCAATGCA+TGG | 0.588805 | 4.3:-70942374 | None:intergenic |
AGCAGCCTGACGGTCAGGTG+TGG | 0.606881 | 4.3:-70942459 | None:intergenic |
AACAGTTGCAAGCAGCCTGA+CGG | 0.612786 | 4.3:-70942469 | None:intergenic |
ATAAACATACGTAGCACAGT+TGG | 0.615719 | 4.3:-70942594 | None:intergenic |
TGCATTGCATATCTTAGAGG+TGG | 0.623803 | 4.3:+70942377 | MS.gene53311:CDS |
ATACGTAGCACAGTTGGTGG+AGG | 0.639269 | 4.3:-70942588 | None:intergenic |
TGTTAACACCACATTTGCCA+GGG | 0.642773 | 4.3:-70942547 | None:intergenic |
GCAGATGCTGCAATCTCATG+TGG | 0.654132 | 4.3:+70942329 | MS.gene53311:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATTTTATTAAAAAAATA+TGG | - | chr4.3:70942844-70942863 | None:intergenic | 0.0% |
!!! | TAAATCATTCTTTTAATTTT+AGG | + | chr4.3:70942734-70942753 | MS.gene53311:intron | 10.0% |
!!! | TTATATTATTCAATGTTTTT+GGG | + | chr4.3:70942863-70942882 | MS.gene53311:intron | 10.0% |
!!! | TTTATATTATTCAATGTTTT+TGG | + | chr4.3:70942862-70942881 | MS.gene53311:intron | 10.0% |
!!! | AAAATTTAGTTGTTTAACTT+TGG | - | chr4.3:70942691-70942710 | None:intergenic | 15.0% |
!!! | TATAAATTCTTTTTTGCTTA+AGG | + | chr4.3:70942807-70942826 | MS.gene53311:intron | 15.0% |
!! | TAGAAAATTAATCACTGACT+AGG | + | chr4.3:70942939-70942958 | MS.gene53311:intron | 25.0% |
!!! | CTACGAATCTACTTTTTTAT+TGG | + | chr4.3:70942907-70942926 | MS.gene53311:intron | 25.0% |
!!! | TTTTATCCTCATTTTTCAAG+TGG | + | chr4.3:70942637-70942656 | MS.gene53311:intron | 25.0% |
TTGTTATACTTACAGCATCA+GGG | + | chr4.3:70942972-70942991 | MS.gene53311:intron | 30.0% | |
! | TTACCATTTGAGATTGTTGA+GGG | + | chr4.3:70942711-70942730 | MS.gene53311:intron | 30.0% |
! | TTTACCATTTGAGATTGTTG+AGG | + | chr4.3:70942710-70942729 | MS.gene53311:intron | 30.0% |
! | TTTGTTATACTTACAGCATC+AGG | + | chr4.3:70942971-70942990 | MS.gene53311:intron | 30.0% |
ACTAGACCACTTGAAAAATG+AGG | - | chr4.3:70942646-70942665 | None:intergenic | 35.0% | |
ATAAACATACGTAGCACAGT+TGG | - | chr4.3:70942597-70942616 | None:intergenic | 35.0% | |
TTACCCTCAACAATCTCAAA+TGG | - | chr4.3:70942717-70942736 | None:intergenic | 35.0% | |
!! | GCTATTTCTGGTTTGAATAC+AGG | + | chr4.3:70942509-70942528 | MS.gene53311:CDS | 35.0% |
ATCTCATGTGGAACAGTAAC+TGG | + | chr4.3:70942341-70942360 | MS.gene53311:CDS | 40.0% | |
ATGTTAACACCACATTTGCC+AGG | - | chr4.3:70942551-70942570 | None:intergenic | 40.0% | |
CCATGCATTGCATATCTTAG+AGG | + | chr4.3:70942374-70942393 | MS.gene53311:CDS | 40.0% | |
TGCATTGCATATCTTAGAGG+TGG | + | chr4.3:70942377-70942396 | MS.gene53311:CDS | 40.0% | |
TGTTAACACCACATTTGCCA+GGG | - | chr4.3:70942550-70942569 | None:intergenic | 40.0% | |
!! | AACTGTTTGAAAAGTGCTGC+TGG | + | chr4.3:70942485-70942504 | MS.gene53311:CDS | 40.0% |
!! | CCTCTAAGATATGCAATGCA+TGG | - | chr4.3:70942377-70942396 | None:intergenic | 40.0% |
AACATACGTAGCACAGTTGG+TGG | - | chr4.3:70942594-70942613 | None:intergenic | 45.0% | |
GTGCATGATTGTTGCACCTA+TGG | + | chr4.3:70942307-70942326 | MS.gene53311:CDS | 45.0% | |
!! | GTGGAGGTACTGATCTTGTA+AGG | - | chr4.3:70942575-70942594 | None:intergenic | 45.0% |
AACAGTTGCAAGCAGCCTGA+CGG | - | chr4.3:70942472-70942491 | None:intergenic | 50.0% | |
GAGATTGCAGCATCTGCCAT+AGG | - | chr4.3:70942326-70942345 | None:intergenic | 50.0% | |
GCAGATGCTGCAATCTCATG+TGG | + | chr4.3:70942329-70942348 | MS.gene53311:CDS | 50.0% | |
GCATATCTTAGAGGTGGTGC+TGG | + | chr4.3:70942383-70942402 | MS.gene53311:CDS | 50.0% | |
TCTTCTCTCCCTGGCAAATG+TGG | + | chr4.3:70942539-70942558 | MS.gene53311:CDS | 50.0% | |
!! | AGTGCTGCTGGTGCTATTTC+TGG | + | chr4.3:70942497-70942516 | MS.gene53311:CDS | 50.0% |
!! | ATACGTAGCACAGTTGGTGG+AGG | - | chr4.3:70942591-70942610 | None:intergenic | 50.0% |
TTCACTCCAGCACAGCATGC+TGG | - | chr4.3:70942416-70942435 | None:intergenic | 55.0% | |
CCAGCACAGCATGCTGGAGA+TGG | - | chr4.3:70942410-70942429 | None:intergenic | 60.0% | |
CCATCTCCAGCATGCTGTGC+TGG | + | chr4.3:70942407-70942426 | MS.gene53311:CDS | 60.0% | |
TTGCAAGCAGCCTGACGGTC+AGG | - | chr4.3:70942467-70942486 | None:intergenic | 60.0% | |
AGCAGCCTGACGGTCAGGTG+TGG | - | chr4.3:70942462-70942481 | None:intergenic | 65.0% | |
AGCCTGACGGTCAGGTGTGG+TGG | - | chr4.3:70942459-70942478 | None:intergenic | 65.0% | |
CACCACCACACCTGACCGTC+AGG | + | chr4.3:70942454-70942473 | MS.gene53311:CDS | 65.0% | |
CTGACGGTCAGGTGTGGTGG+TGG | - | chr4.3:70942456-70942475 | None:intergenic | 65.0% | |
GGCGCAGCTTCTTCTCTCCC+TGG | + | chr4.3:70942530-70942549 | MS.gene53311:CDS | 65.0% | |
!! | ACGGTCAGGTGTGGTGGTGG+CGG | - | chr4.3:70942453-70942472 | None:intergenic | 65.0% |
!! | GTCAGGTGTGGTGGTGGCGG+CGG | - | chr4.3:70942450-70942469 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 70942269 | 70942999 | 70942269 | ID=MS.gene53311 |
chr4.3 | mRNA | 70942269 | 70942999 | 70942269 | ID=MS.gene53311.t1;Parent=MS.gene53311 |
chr4.3 | exon | 70942269 | 70942606 | 70942269 | ID=MS.gene53311.t1.exon1;Parent=MS.gene53311.t1 |
chr4.3 | CDS | 70942269 | 70942606 | 70942269 | ID=cds.MS.gene53311.t1;Parent=MS.gene53311.t1 |
chr4.3 | exon | 70942987 | 70942999 | 70942987 | ID=MS.gene53311.t1.exon2;Parent=MS.gene53311.t1 |
chr4.3 | CDS | 70942987 | 70942999 | 70942987 | ID=cds.MS.gene53311.t1;Parent=MS.gene53311.t1 |
Gene Sequence |
Protein sequence |