Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53309.t1 | KEH29195.1 | 87.9 | 116 | 14 | 0 | 1 | 116 | 58 | 173 | 6.50E-48 | 199.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53309.t1 | A0AT31 | 77.0 | 113 | 26 | 0 | 3 | 115 | 4 | 116 | 2.0e-42 | 172.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53309.t1 | A0A072UTH7 | 87.9 | 116 | 14 | 0 | 1 | 116 | 58 | 173 | 4.7e-48 | 199.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene53309 | 0.802303 | 5.98E-49 | -1.69E-46 |
MS.gene049346 | MS.gene53309 | 0.806803 | 6.89E-50 | -1.69E-46 |
MS.gene049758 | MS.gene53309 | 0.812127 | 4.96E-51 | -1.69E-46 |
MS.gene050099 | MS.gene53309 | 0.800026 | 1.75E-48 | -1.69E-46 |
MS.gene050128 | MS.gene53309 | 0.81226 | 4.64E-51 | -1.69E-46 |
MS.gene050301 | MS.gene53309 | 0.840752 | 7.20E-58 | -1.69E-46 |
MS.gene050397 | MS.gene53309 | 0.816078 | 6.66E-52 | -1.69E-46 |
MS.gene050404 | MS.gene53309 | 0.810962 | 8.88E-51 | -1.69E-46 |
MS.gene050406 | MS.gene53309 | 0.803052 | 4.19E-49 | -1.69E-46 |
MS.gene050432 | MS.gene53309 | 0.803105 | 4.09E-49 | -1.69E-46 |
MS.gene05101 | MS.gene53309 | 0.803988 | 2.68E-49 | -1.69E-46 |
MS.gene052078 | MS.gene53309 | 0.810457 | 1.14E-50 | -1.69E-46 |
MS.gene052178 | MS.gene53309 | 0.844382 | 7.83E-59 | -1.69E-46 |
MS.gene052310 | MS.gene53309 | 0.812793 | 3.55E-51 | -1.69E-46 |
MS.gene052340 | MS.gene53309 | 0.849676 | 2.77E-60 | -1.69E-46 |
MS.gene053209 | MS.gene53309 | 0.900835 | 4.92E-78 | -1.69E-46 |
MS.gene053557 | MS.gene53309 | 0.852945 | 3.31E-61 | -1.69E-46 |
MS.gene053928 | MS.gene53309 | 0.814942 | 1.19E-51 | -1.69E-46 |
MS.gene055116 | MS.gene53309 | 0.821942 | 3.09E-53 | -1.69E-46 |
MS.gene055254 | MS.gene53309 | 0.80085 | 1.19E-48 | -1.69E-46 |
MS.gene055277 | MS.gene53309 | 0.842213 | 2.97E-58 | -1.69E-46 |
MS.gene055604 | MS.gene53309 | 0.815191 | 1.05E-51 | -1.69E-46 |
MS.gene056191 | MS.gene53309 | 0.828028 | 1.13E-54 | -1.69E-46 |
MS.gene056410 | MS.gene53309 | 0.828286 | 9.78E-55 | -1.69E-46 |
MS.gene056612 | MS.gene53309 | 0.801963 | 7.03E-49 | -1.69E-46 |
MS.gene056796 | MS.gene53309 | 0.804569 | 2.03E-49 | -1.69E-46 |
MS.gene05702 | MS.gene53309 | 0.821115 | 4.79E-53 | -1.69E-46 |
MS.gene05733 | MS.gene53309 | 0.801472 | 8.86E-49 | -1.69E-46 |
MS.gene057796 | MS.gene53309 | 0.819549 | 1.10E-52 | -1.69E-46 |
MS.gene058002 | MS.gene53309 | 0.800018 | 1.75E-48 | -1.69E-46 |
MS.gene058082 | MS.gene53309 | 0.815597 | 8.52E-52 | -1.69E-46 |
MS.gene05811 | MS.gene53309 | 0.821397 | 4.13E-53 | -1.69E-46 |
MS.gene05907 | MS.gene53309 | 0.801907 | 7.22E-49 | -1.69E-46 |
MS.gene059294 | MS.gene53309 | 0.807329 | 5.33E-50 | -1.69E-46 |
MS.gene059518 | MS.gene53309 | 0.819903 | 9.10E-53 | -1.69E-46 |
MS.gene059688 | MS.gene53309 | 0.819346 | 1.22E-52 | -1.69E-46 |
MS.gene059692 | MS.gene53309 | 0.847518 | 1.10E-59 | -1.69E-46 |
MS.gene059695 | MS.gene53309 | 0.842785 | 2.09E-58 | -1.69E-46 |
MS.gene059894 | MS.gene53309 | 0.8491 | 4.02E-60 | -1.69E-46 |
MS.gene059974 | MS.gene53309 | 0.89596 | 5.83E-76 | -1.69E-46 |
MS.gene06037 | MS.gene53309 | 0.838933 | 2.14E-57 | -1.69E-46 |
MS.gene060569 | MS.gene53309 | 0.804069 | 2.58E-49 | -1.69E-46 |
MS.gene061049 | MS.gene53309 | 0.843513 | 1.34E-58 | -1.69E-46 |
MS.gene061154 | MS.gene53309 | 0.823963 | 1.04E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene48828 | MS.gene53309 | PPI |
MS.gene82219 | MS.gene53309 | PPI |
MS.gene76705 | MS.gene53309 | PPI |
MS.gene48797 | MS.gene53309 | PPI |
MS.gene53309 | MS.gene82222 | PPI |
MS.gene76710 | MS.gene53309 | PPI |
MS.gene48831 | MS.gene53309 | PPI |
MS.gene53311 | MS.gene53309 | PPI |
MS.gene48796 | MS.gene53309 | PPI |
MS.gene76747 | MS.gene53309 | PPI |
MS.gene53305 | MS.gene53309 | PPI |
MS.gene53309 | MS.gene76714 | PPI |
MS.gene82222 | MS.gene53309 | PPI |
MS.gene82256 | MS.gene53309 | PPI |
MS.gene48835 | MS.gene53309 | PPI |
MS.gene82221 | MS.gene53309 | PPI |
MS.gene48829 | MS.gene53309 | PPI |
MS.gene76713 | MS.gene53309 | PPI |
MS.gene76714 | MS.gene53309 | PPI |
MS.gene53309 | MS.gene82219 | PPI |
MS.gene77025 | MS.gene53309 | PPI |
MS.gene76745 | MS.gene53309 | PPI |
MS.gene82253 | MS.gene53309 | PPI |
MS.gene53312 | MS.gene53309 | PPI |
MS.gene77022 | MS.gene53309 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53309.t1 | MTR_4g428370 | 87.931 | 116 | 14 | 0 | 1 | 116 | 58 | 173 | 1.25e-69 | 206 |
MS.gene53309.t1 | MTR_4g027840 | 86.957 | 115 | 15 | 0 | 1 | 115 | 1 | 115 | 1.35e-66 | 197 |
MS.gene53309.t1 | MTR_4g027800 | 86.207 | 116 | 16 | 0 | 1 | 116 | 1 | 116 | 1.72e-66 | 196 |
MS.gene53309.t1 | MTR_4g029390 | 66.667 | 117 | 36 | 2 | 1 | 115 | 1 | 116 | 1.03e-47 | 149 |
MS.gene53309.t1 | MTR_4g029350 | 66.667 | 117 | 36 | 2 | 1 | 115 | 1 | 116 | 1.24e-46 | 146 |
MS.gene53309.t1 | MTR_4g028190 | 48.246 | 114 | 57 | 2 | 1 | 112 | 5 | 118 | 5.72e-31 | 107 |
MS.gene53309.t1 | MTR_4g029210 | 48.214 | 112 | 58 | 0 | 1 | 112 | 1 | 112 | 2.13e-30 | 105 |
MS.gene53309.t1 | MTR_7g072930 | 47.321 | 112 | 56 | 2 | 4 | 113 | 7 | 117 | 1.07e-28 | 102 |
MS.gene53309.t1 | MTR_4g028180 | 43.220 | 118 | 60 | 3 | 5 | 115 | 9 | 126 | 2.91e-27 | 97.4 |
MS.gene53309.t1 | MTR_7g072830 | 40.351 | 114 | 66 | 1 | 4 | 115 | 7 | 120 | 4.63e-27 | 97.1 |
MS.gene53309.t1 | MTR_7g073150 | 45.690 | 116 | 58 | 4 | 2 | 113 | 3 | 117 | 4.94e-27 | 97.1 |
MS.gene53309.t1 | MTR_7g072730 | 41.071 | 112 | 64 | 2 | 4 | 113 | 7 | 118 | 6.40e-26 | 95.5 |
MS.gene53309.t1 | MTR_4g028310 | 40.336 | 119 | 68 | 1 | 1 | 116 | 1 | 119 | 5.60e-25 | 92.0 |
MS.gene53309.t1 | MTR_7g073170 | 41.593 | 113 | 62 | 3 | 4 | 114 | 7 | 117 | 5.81e-25 | 91.7 |
MS.gene53309.t1 | MTR_2g062600 | 41.739 | 115 | 65 | 2 | 1 | 114 | 1 | 114 | 1.17e-24 | 90.5 |
MS.gene53309.t1 | MTR_7g073120 | 37.168 | 113 | 69 | 1 | 1 | 111 | 5 | 117 | 3.61e-21 | 82.8 |
MS.gene53309.t1 | MTR_4g028250 | 39.831 | 118 | 68 | 2 | 1 | 115 | 1 | 118 | 6.59e-21 | 81.3 |
MS.gene53309.t1 | MTR_7g072900 | 43.750 | 112 | 58 | 4 | 4 | 112 | 7 | 116 | 1.22e-20 | 80.5 |
MS.gene53309.t1 | MTR_7g072993 | 42.857 | 112 | 59 | 3 | 4 | 111 | 7 | 117 | 8.94e-20 | 79.0 |
MS.gene53309.t1 | MTR_3g467100 | 36.607 | 112 | 70 | 1 | 5 | 115 | 3 | 114 | 4.05e-19 | 76.6 |
MS.gene53309.t1 | MTR_4g028360 | 36.283 | 113 | 69 | 3 | 4 | 114 | 1 | 112 | 1.23e-17 | 73.2 |
MS.gene53309.t1 | MTR_7g072960 | 39.252 | 107 | 49 | 3 | 9 | 113 | 11 | 103 | 1.90e-17 | 72.8 |
MS.gene53309.t1 | MTR_7g451500 | 38.043 | 92 | 56 | 1 | 24 | 114 | 7 | 98 | 3.34e-17 | 71.2 |
MS.gene53309.t1 | MTR_7g072980 | 37.500 | 112 | 66 | 3 | 4 | 112 | 7 | 117 | 8.24e-17 | 71.2 |
MS.gene53309.t1 | MTR_7g073130 | 38.739 | 111 | 64 | 4 | 4 | 112 | 7 | 115 | 1.08e-16 | 70.5 |
MS.gene53309.t1 | MTR_1g040335 | 41.071 | 112 | 63 | 2 | 5 | 114 | 8 | 118 | 2.76e-16 | 69.3 |
MS.gene53309.t1 | MTR_7g073060 | 38.053 | 113 | 67 | 3 | 4 | 114 | 7 | 118 | 7.07e-16 | 68.2 |
MS.gene53309.t1 | MTR_7g073100 | 37.168 | 113 | 64 | 2 | 4 | 112 | 7 | 116 | 7.86e-16 | 68.9 |
MS.gene53309.t1 | MTR_7g072810 | 39.091 | 110 | 59 | 3 | 4 | 111 | 7 | 110 | 5.80e-15 | 66.2 |
MS.gene53309.t1 | MTR_3g056640 | 34.821 | 112 | 67 | 3 | 9 | 115 | 12 | 122 | 1.57e-14 | 65.1 |
MS.gene53309.t1 | MTR_3g046515 | 34.821 | 112 | 67 | 4 | 3 | 110 | 10 | 119 | 9.26e-14 | 62.8 |
MS.gene53309.t1 | MTR_3g046530 | 30.769 | 117 | 75 | 3 | 4 | 115 | 7 | 122 | 2.36e-13 | 62.0 |
MS.gene53309.t1 | MTR_7g073030 | 35.455 | 110 | 68 | 3 | 4 | 111 | 7 | 115 | 2.96e-13 | 62.4 |
MS.gene53309.t1 | MTR_3g464130 | 37.778 | 90 | 51 | 3 | 25 | 110 | 18 | 106 | 6.57e-13 | 60.5 |
MS.gene53309.t1 | MTR_3g046350 | 31.373 | 102 | 64 | 3 | 10 | 106 | 13 | 113 | 1.66e-12 | 59.7 |
MS.gene53309.t1 | MTR_3g046540 | 33.043 | 115 | 67 | 5 | 4 | 110 | 7 | 119 | 1.94e-12 | 59.7 |
MS.gene53309.t1 | MTR_3g464110 | 40.244 | 82 | 44 | 3 | 33 | 110 | 92 | 172 | 2.54e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53309.t1 | AT5G59320 | 60.185 | 108 | 41 | 1 | 8 | 115 | 10 | 115 | 2.33e-39 | 127 |
MS.gene53309.t1 | AT2G38540 | 63.793 | 116 | 36 | 6 | 4 | 115 | 5 | 118 | 2.80e-38 | 125 |
MS.gene53309.t1 | AT5G59310 | 60.185 | 108 | 38 | 2 | 8 | 115 | 10 | 112 | 1.21e-37 | 123 |
MS.gene53309.t1 | AT2G38530 | 61.739 | 115 | 40 | 4 | 4 | 115 | 5 | 118 | 1.46e-34 | 115 |
MS.gene53309.t1 | AT3G51600 | 53.913 | 115 | 49 | 4 | 4 | 115 | 5 | 118 | 2.66e-30 | 105 |
MS.gene53309.t1 | AT3G51590 | 47.273 | 110 | 55 | 3 | 6 | 114 | 8 | 115 | 7.40e-29 | 101 |
MS.gene53309.t1 | AT2G15050 | 45.763 | 118 | 58 | 4 | 4 | 115 | 5 | 122 | 3.22e-28 | 100 |
MS.gene53309.t1 | AT2G15050 | 45.690 | 116 | 57 | 4 | 4 | 113 | 5 | 120 | 8.99e-27 | 96.3 |
MS.gene53309.t1 | AT2G15050 | 45.872 | 109 | 55 | 3 | 4 | 108 | 5 | 113 | 4.03e-26 | 94.4 |
MS.gene53309.t1 | AT5G01870 | 44.737 | 114 | 55 | 4 | 9 | 115 | 4 | 116 | 7.80e-26 | 93.6 |
MS.gene53309.t1 | AT4G33355 | 48.387 | 93 | 48 | 0 | 23 | 115 | 27 | 119 | 3.43e-24 | 89.7 |
MS.gene53309.t1 | AT4G33355 | 49.438 | 89 | 45 | 0 | 23 | 111 | 27 | 115 | 1.37e-23 | 88.2 |
MS.gene53309.t1 | AT3G08770 | 46.392 | 97 | 48 | 3 | 22 | 115 | 18 | 113 | 1.16e-21 | 83.2 |
MS.gene53309.t1 | AT3G08770 | 46.316 | 95 | 47 | 3 | 22 | 113 | 18 | 111 | 9.52e-21 | 80.9 |
MS.gene53309.t1 | AT2G18370 | 36.364 | 110 | 68 | 2 | 6 | 114 | 7 | 115 | 7.44e-19 | 75.9 |
MS.gene53309.t1 | AT2G15325 | 35.165 | 91 | 56 | 2 | 27 | 115 | 31 | 120 | 2.26e-12 | 59.3 |
Find 31 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTGCTGCTGGTGCTATTTC+TGG | 0.136175 | 4.3:+70973147 | MS.gene53309:CDS |
CCATGCATTGCATATCTTAG+AGG | 0.320070 | 4.3:+70973024 | MS.gene53309:CDS |
AATGTTAACACCGCATTTGC+CGG | 0.346833 | 4.3:-70973199 | None:intergenic |
CCATCTCCAGCATGCTGTGC+TGG | 0.375274 | 4.3:+70973057 | MS.gene53309:CDS |
AACACAGCTGCTGGTCTTCC+CGG | 0.392611 | 4.3:+70973180 | MS.gene53309:CDS |
TTGCAAGCAGCCTGACGGTC+AGG | 0.421711 | 4.3:-70973114 | None:intergenic |
ATCTCATGTGGAACAGTAAC+TGG | 0.426922 | 4.3:+70972991 | MS.gene53309:CDS |
GGTAGAGGTACTGATCTTGT+AGG | 0.430936 | 4.3:-70973223 | None:intergenic |
CACCACCACGCCTGACCGTC+AGG | 0.443141 | 4.3:+70973104 | MS.gene53309:CDS |
ACGGTCAGGCGTGGTGGTGG+CGG | 0.445777 | 4.3:-70973100 | None:intergenic |
GTCAGGCGTGGTGGTGGCGG+CGG | 0.446691 | 4.3:-70973097 | None:intergenic |
GTGCATGATTGTTGCACCTA+TGG | 0.467928 | 4.3:+70972957 | MS.gene53309:CDS |
TTCACTCCAGCACAGCATGC+TGG | 0.485039 | 4.3:-70973063 | None:intergenic |
AACTGCTTGAAAAGTGCTGC+TGG | 0.486030 | 4.3:+70973135 | MS.gene53309:CDS |
ATGTTAACACCGCATTTGCC+GGG | 0.493990 | 4.3:-70973198 | None:intergenic |
GCATATCTTAGAGGTGGTGC+TGG | 0.504129 | 4.3:+70973033 | MS.gene53309:CDS |
CTGACGGTCAGGCGTGGTGG+TGG | 0.517462 | 4.3:-70973103 | None:intergenic |
CCAGCACAGCATGCTGGAGA+TGG | 0.550113 | 4.3:-70973057 | None:intergenic |
TTGAATGCTAACACAGCTGC+TGG | 0.551046 | 4.3:+70973171 | MS.gene53309:CDS |
GTAGAGGTACTGATCTTGTA+GGG | 0.565695 | 4.3:-70973222 | None:intergenic |
AGCAGCCTGACGGTCAGGCG+TGG | 0.565783 | 4.3:-70973109 | None:intergenic |
TGGTTATATTTACAGCATCA+GGG | 0.568642 | 4.3:+70973702 | MS.gene53309:intron |
AGCCTGACGGTCAGGCGTGG+TGG | 0.576862 | 4.3:-70973106 | None:intergenic |
GAGATTGCAGCATCTGCCAT+AGG | 0.577723 | 4.3:-70972973 | None:intergenic |
AAGAACTTACGTAGCACAGT+TGG | 0.585095 | 4.3:-70973244 | None:intergenic |
CCTCTAAGATATGCAATGCA+TGG | 0.588805 | 4.3:-70973024 | None:intergenic |
GCTGGTCTTCCCGGCAAATG+CGG | 0.592170 | 4.3:+70973189 | MS.gene53309:CDS |
TTACGTAGCACAGTTGGTAG+AGG | 0.599761 | 4.3:-70973238 | None:intergenic |
TGCATTGCATATCTTAGAGG+TGG | 0.623803 | 4.3:+70973027 | MS.gene53309:CDS |
AGCAGTTGCAAGCAGCCTGA+CGG | 0.624471 | 4.3:-70973119 | None:intergenic |
GCAGATGCTGCAATCTCATG+TGG | 0.654132 | 4.3:+70972979 | MS.gene53309:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTGGTTATTTATTTTT+TGG | + | chr4.3:70973607-70973626 | MS.gene53309:intron | 10.0% |
!!! | AAACATTTTTGTGAATTTTT+TGG | + | chr4.3:70973525-70973544 | MS.gene53309:intron | 15.0% |
!!! | ACTAGTTTTTTTTTTTTGTT+TGG | + | chr4.3:70973682-70973701 | MS.gene53309:intron | 15.0% |
!!! | TTATTTTTTGGTGTTATTAT+TGG | + | chr4.3:70973619-70973638 | MS.gene53309:intron | 15.0% |
!!! | TTTTTCTTACTTCTAAAATT+TGG | - | chr4.3:70973463-70973482 | None:intergenic | 15.0% |
!!! | TTATTGGTTAATATTCAAGT+CGG | + | chr4.3:70973635-70973654 | MS.gene53309:intron | 20.0% |
! | GAAAAATATAGTAAGAGTGA+AGG | - | chr4.3:70973280-70973299 | None:intergenic | 25.0% |
TGGTTATATTTACAGCATCA+GGG | + | chr4.3:70973702-70973721 | MS.gene53309:intron | 30.0% | |
TTAAGAAACGCTGTATAAAG+AGG | + | chr4.3:70973311-70973330 | MS.gene53309:intron | 30.0% | |
TTGGTTATATTTACAGCATC+AGG | + | chr4.3:70973701-70973720 | MS.gene53309:intron | 30.0% | |
CTGATCTACTGCTTCTTTAT+TGG | + | chr4.3:70973592-70973611 | MS.gene53309:intron | 35.0% | |
AAGAACTTACGTAGCACAGT+TGG | - | chr4.3:70973247-70973266 | None:intergenic | 40.0% | |
AATGTTAACACCGCATTTGC+CGG | - | chr4.3:70973202-70973221 | None:intergenic | 40.0% | |
ATCTCATGTGGAACAGTAAC+TGG | + | chr4.3:70972991-70973010 | MS.gene53309:CDS | 40.0% | |
CCATGCATTGCATATCTTAG+AGG | + | chr4.3:70973024-70973043 | MS.gene53309:CDS | 40.0% | |
TATTCAAGTCGGTCGAAAAG+TGG | + | chr4.3:70973646-70973665 | MS.gene53309:intron | 40.0% | |
TGCATTGCATATCTTAGAGG+TGG | + | chr4.3:70973027-70973046 | MS.gene53309:CDS | 40.0% | |
!! | CCTCTAAGATATGCAATGCA+TGG | - | chr4.3:70973027-70973046 | None:intergenic | 40.0% |
!! | GTAGAGGTACTGATCTTGTA+GGG | - | chr4.3:70973225-70973244 | None:intergenic | 40.0% |
ATGTTAACACCGCATTTGCC+GGG | - | chr4.3:70973201-70973220 | None:intergenic | 45.0% | |
GTGCATGATTGTTGCACCTA+TGG | + | chr4.3:70972957-70972976 | MS.gene53309:CDS | 45.0% | |
TTGAATGCTAACACAGCTGC+TGG | + | chr4.3:70973171-70973190 | MS.gene53309:CDS | 45.0% | |
!! | AACTGCTTGAAAAGTGCTGC+TGG | + | chr4.3:70973135-70973154 | MS.gene53309:CDS | 45.0% |
!! | GGTAGAGGTACTGATCTTGT+AGG | - | chr4.3:70973226-70973245 | None:intergenic | 45.0% |
!! | TTACGTAGCACAGTTGGTAG+AGG | - | chr4.3:70973241-70973260 | None:intergenic | 45.0% |
!!! | AAAAATTATAATATTTTTAG+AGG | + | chr4.3:70973478-70973497 | MS.gene53309:intron | 5.0% |
!!! | CTTTATAATAATTTTTTTTT+AGG | + | chr4.3:70973554-70973573 | MS.gene53309:intron | 5.0% |
GAGATTGCAGCATCTGCCAT+AGG | - | chr4.3:70972976-70972995 | None:intergenic | 50.0% | |
GCAGATGCTGCAATCTCATG+TGG | + | chr4.3:70972979-70972998 | MS.gene53309:CDS | 50.0% | |
GCATATCTTAGAGGTGGTGC+TGG | + | chr4.3:70973033-70973052 | MS.gene53309:CDS | 50.0% | |
!! | AGTGCTGCTGGTGCTATTTC+TGG | + | chr4.3:70973147-70973166 | MS.gene53309:CDS | 50.0% |
AGCAGTTGCAAGCAGCCTGA+CGG | - | chr4.3:70973122-70973141 | None:intergenic | 55.0% | |
TTCACTCCAGCACAGCATGC+TGG | - | chr4.3:70973066-70973085 | None:intergenic | 55.0% | |
!! | AACACAGCTGCTGGTCTTCC+CGG | + | chr4.3:70973180-70973199 | MS.gene53309:CDS | 55.0% |
CCAGCACAGCATGCTGGAGA+TGG | - | chr4.3:70973060-70973079 | None:intergenic | 60.0% | |
CCATCTCCAGCATGCTGTGC+TGG | + | chr4.3:70973057-70973076 | MS.gene53309:CDS | 60.0% | |
TTGCAAGCAGCCTGACGGTC+AGG | - | chr4.3:70973117-70973136 | None:intergenic | 60.0% | |
!! | GCTGGTCTTCCCGGCAAATG+CGG | + | chr4.3:70973189-70973208 | MS.gene53309:CDS | 60.0% |
AGCAGCCTGACGGTCAGGCG+TGG | - | chr4.3:70973112-70973131 | None:intergenic | 70.0% | |
AGCCTGACGGTCAGGCGTGG+TGG | - | chr4.3:70973109-70973128 | None:intergenic | 70.0% | |
CACCACCACGCCTGACCGTC+AGG | + | chr4.3:70973104-70973123 | MS.gene53309:CDS | 70.0% | |
CTGACGGTCAGGCGTGGTGG+TGG | - | chr4.3:70973106-70973125 | None:intergenic | 70.0% | |
!! | ACGGTCAGGCGTGGTGGTGG+CGG | - | chr4.3:70973103-70973122 | None:intergenic | 70.0% |
!! | GTCAGGCGTGGTGGTGGCGG+CGG | - | chr4.3:70973100-70973119 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 70972919 | 70973729 | 70972919 | ID=MS.gene53309 |
chr4.3 | mRNA | 70972919 | 70973729 | 70972919 | ID=MS.gene53309.t1;Parent=MS.gene53309 |
chr4.3 | exon | 70972919 | 70973256 | 70972919 | ID=MS.gene53309.t1.exon1;Parent=MS.gene53309.t1 |
chr4.3 | CDS | 70972919 | 70973256 | 70972919 | ID=cds.MS.gene53309.t1;Parent=MS.gene53309.t1 |
chr4.3 | exon | 70973717 | 70973729 | 70973717 | ID=MS.gene53309.t1.exon2;Parent=MS.gene53309.t1 |
chr4.3 | CDS | 70973717 | 70973729 | 70973717 | ID=cds.MS.gene53309.t1;Parent=MS.gene53309.t1 |
Gene Sequence |
Protein sequence |