Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84472.t1 | XP_013467000.1 | 99.4 | 354 | 2 | 0 | 1 | 354 | 168 | 521 | 9.70E-204 | 719.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84472.t1 | Q5XEP9 | 84.8 | 361 | 48 | 3 | 1 | 354 | 164 | 524 | 1.3e-177 | 623.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84472.t1 | G7ZZP2 | 99.4 | 354 | 2 | 0 | 1 | 354 | 168 | 521 | 7.0e-204 | 719.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene84472 | 0.805885 | 1.08E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene84472 | 0.838363 | 3.01E-57 | -1.69E-46 |
| MS.gene049491 | MS.gene84472 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene049661 | MS.gene84472 | 0.827898 | 1.21E-54 | -1.69E-46 |
| MS.gene049662 | MS.gene84472 | 0.814759 | 1.31E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene84472 | 0.812908 | 3.35E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene84472 | 0.804646 | 1.95E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene84472 | 0.816749 | 4.71E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene84472 | 0.846694 | 1.85E-59 | -1.69E-46 |
| MS.gene050432 | MS.gene84472 | 0.820407 | 6.97E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene84472 | 0.838131 | 3.45E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene84472 | 0.812679 | 3.76E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene84472 | 0.833246 | 5.96E-56 | -1.69E-46 |
| MS.gene051666 | MS.gene84472 | 0.800201 | 1.61E-48 | -1.69E-46 |
| MS.gene051860 | MS.gene84472 | 0.801097 | 1.06E-48 | -1.69E-46 |
| MS.gene051877 | MS.gene84472 | 0.817168 | 3.79E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene84472 | 0.819288 | 1.26E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene84472 | 0.861608 | 9.10E-64 | -1.69E-46 |
| MS.gene052253 | MS.gene84472 | 0.824818 | 6.57E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene84472 | 0.822008 | 2.98E-53 | -1.69E-46 |
| MS.gene052326 | MS.gene84472 | 0.8064 | 8.38E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene84472 | 0.824951 | 6.11E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene84472 | 0.849663 | 2.80E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene84472 | 0.839112 | 1.92E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene84472 | 0.844398 | 7.75E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene84472 | 0.833788 | 4.36E-56 | -1.69E-46 |
| MS.gene054473 | MS.gene84472 | 0.813955 | 1.97E-51 | -1.69E-46 |
| MS.gene054955 | MS.gene84472 | 0.81231 | 4.52E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene84472 | 0.846636 | 1.92E-59 | -1.69E-46 |
| MS.gene055277 | MS.gene84472 | 0.816341 | 5.81E-52 | -1.69E-46 |
| MS.gene055390 | MS.gene84472 | 0.807216 | 5.63E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene84472 | 0.830859 | 2.32E-55 | -1.69E-46 |
| MS.gene055428 | MS.gene84472 | 0.817655 | 2.95E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene84472 | 0.824861 | 6.42E-54 | -1.69E-46 |
| MS.gene05602 | MS.gene84472 | 0.814404 | 1.57E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene84472 | 0.841248 | 5.33E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene84472 | 0.852483 | 4.48E-61 | -1.69E-46 |
| MS.gene056410 | MS.gene84472 | 0.818593 | 1.81E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene84472 | 0.820814 | 5.62E-53 | -1.69E-46 |
| MS.gene056931 | MS.gene84472 | 0.847048 | 1.48E-59 | -1.69E-46 |
| MS.gene056933 | MS.gene84472 | 0.845211 | 4.68E-59 | -1.69E-46 |
| MS.gene056935 | MS.gene84472 | 0.837976 | 3.78E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene84472 | 0.819585 | 1.08E-52 | -1.69E-46 |
| MS.gene057123 | MS.gene84472 | 0.808924 | 2.44E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene84472 | 0.830747 | 2.47E-55 | -1.69E-46 |
| MS.gene057285 | MS.gene84472 | 0.803285 | 3.75E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene84472 | 0.836629 | 8.37E-57 | -1.69E-46 |
| MS.gene057449 | MS.gene84472 | 0.827562 | 1.46E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene84472 | 0.834942 | 2.24E-56 | -1.69E-46 |
| MS.gene057749 | MS.gene84472 | 0.863958 | 1.72E-64 | -1.69E-46 |
| MS.gene057823 | MS.gene84472 | 0.85996 | 2.88E-63 | -1.69E-46 |
| MS.gene057824 | MS.gene84472 | 0.803455 | 3.46E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene84472 | 0.852245 | 5.24E-61 | -1.69E-46 |
| MS.gene058007 | MS.gene84472 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene84472 | 0.808379 | 3.19E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene84472 | 0.82081 | 5.63E-53 | -1.69E-46 |
| MS.gene058365 | MS.gene84472 | 0.80635 | 8.59E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene84472 | 0.875387 | 3.21E-68 | -1.69E-46 |
| MS.gene05886 | MS.gene84472 | 0.80709 | 5.99E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene84472 | 0.846944 | 1.58E-59 | -1.69E-46 |
| MS.gene058949 | MS.gene84472 | 0.814229 | 1.71E-51 | -1.69E-46 |
| MS.gene058995 | MS.gene84472 | 0.813816 | 2.11E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene84472 | 0.846505 | 2.08E-59 | -1.69E-46 |
| MS.gene059285 | MS.gene84472 | 0.812433 | 4.25E-51 | -1.69E-46 |
| MS.gene059294 | MS.gene84472 | 0.804488 | 2.11E-49 | -1.69E-46 |
| MS.gene059366 | MS.gene84472 | 0.822981 | 1.77E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene84472 | 0.821439 | 4.04E-53 | -1.69E-46 |
| MS.gene059597 | MS.gene84472 | 0.859936 | 2.93E-63 | -1.69E-46 |
| MS.gene059676 | MS.gene84472 | 0.828325 | 9.57E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene84472 | 0.86128 | 1.15E-63 | -1.69E-46 |
| MS.gene059692 | MS.gene84472 | 0.858053 | 1.07E-62 | -1.69E-46 |
| MS.gene059695 | MS.gene84472 | 0.861575 | 9.31E-64 | -1.69E-46 |
| MS.gene059711 | MS.gene84472 | 0.810816 | 9.55E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene84472 | 0.800779 | 1.23E-48 | -1.69E-46 |
| MS.gene05984 | MS.gene84472 | 0.807849 | 4.13E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene84472 | 0.826528 | 2.58E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene84472 | 0.826615 | 2.46E-54 | -1.69E-46 |
| MS.gene060495 | MS.gene84472 | 0.812087 | 5.06E-51 | -1.69E-46 |
| MS.gene060559 | MS.gene84472 | 0.841088 | 5.87E-58 | -1.69E-46 |
| MS.gene060804 | MS.gene84472 | 0.802756 | 4.82E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene84472 | 0.811438 | 7.00E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene84472 | 0.836704 | 8.01E-57 | -1.69E-46 |
| MS.gene061051 | MS.gene84472 | -0.845228 | 4.63E-59 | -1.69E-46 |
| MS.gene061200 | MS.gene84472 | 0.805019 | 1.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84472.t1 | MTR_1g041085 | 99.435 | 354 | 2 | 0 | 1 | 354 | 168 | 521 | 0.0 | 741 |
| MS.gene84472.t1 | MTR_1g076430 | 91.243 | 354 | 30 | 1 | 1 | 354 | 162 | 514 | 0.0 | 690 |
| MS.gene84472.t1 | MTR_2g054940 | 85.755 | 351 | 50 | 0 | 1 | 351 | 161 | 511 | 0.0 | 638 |
| MS.gene84472.t1 | MTR_7g081695 | 83.918 | 342 | 43 | 1 | 1 | 342 | 161 | 490 | 0.0 | 595 |
| MS.gene84472.t1 | MTR_4g113280 | 80.912 | 351 | 56 | 1 | 1 | 351 | 150 | 489 | 0.0 | 590 |
| MS.gene84472.t1 | MTR_7g118170 | 76.791 | 349 | 78 | 2 | 1 | 346 | 181 | 529 | 0.0 | 570 |
| MS.gene84472.t1 | MTR_4g070270 | 74.419 | 344 | 87 | 1 | 2 | 345 | 160 | 502 | 0.0 | 545 |
| MS.gene84472.t1 | MTR_1g110930 | 69.628 | 349 | 105 | 1 | 3 | 351 | 149 | 496 | 0.0 | 519 |
| MS.gene84472.t1 | MTR_5g056510 | 68.481 | 349 | 109 | 1 | 3 | 351 | 149 | 496 | 1.82e-180 | 509 |
| MS.gene84472.t1 | MTR_6g032965 | 66.763 | 346 | 115 | 0 | 1 | 346 | 40 | 385 | 2.74e-177 | 497 |
| MS.gene84472.t1 | MTR_6g074880 | 67.241 | 348 | 113 | 1 | 1 | 347 | 123 | 470 | 3.18e-177 | 500 |
| MS.gene84472.t1 | MTR_4g054630 | 67.052 | 346 | 113 | 1 | 1 | 345 | 121 | 466 | 9.78e-176 | 496 |
| MS.gene84472.t1 | MTR_4g054415 | 67.052 | 346 | 113 | 1 | 1 | 345 | 80 | 425 | 1.19e-175 | 494 |
| MS.gene84472.t1 | MTR_3g105550 | 64.451 | 346 | 114 | 1 | 9 | 345 | 191 | 536 | 7.20e-173 | 492 |
| MS.gene84472.t1 | MTR_7g118160 | 65.749 | 327 | 99 | 3 | 26 | 344 | 97 | 418 | 4.31e-158 | 450 |
| MS.gene84472.t1 | MTR_2g013740 | 60.182 | 329 | 127 | 2 | 9 | 337 | 179 | 503 | 1.29e-140 | 409 |
| MS.gene84472.t1 | MTR_2g007020 | 55.491 | 346 | 152 | 2 | 2 | 346 | 108 | 452 | 1.43e-138 | 402 |
| MS.gene84472.t1 | MTR_2g436480 | 53.468 | 346 | 158 | 2 | 2 | 345 | 107 | 451 | 8.49e-137 | 397 |
| MS.gene84472.t1 | MTR_1g102290 | 46.199 | 342 | 183 | 1 | 3 | 343 | 143 | 484 | 5.01e-109 | 327 |
| MS.gene84472.t1 | MTR_4g054260 | 58.984 | 256 | 87 | 2 | 91 | 345 | 87 | 325 | 1.39e-104 | 310 |
| MS.gene84472.t1 | MTR_3g072980 | 45.748 | 341 | 184 | 1 | 3 | 343 | 144 | 483 | 3.34e-103 | 312 |
| MS.gene84472.t1 | MTR_3g072940 | 45.748 | 341 | 184 | 1 | 3 | 343 | 144 | 483 | 4.43e-103 | 312 |
| MS.gene84472.t1 | MTR_4g062190 | 43.626 | 353 | 177 | 3 | 6 | 342 | 96 | 442 | 2.27e-100 | 305 |
| MS.gene84472.t1 | MTR_4g062270 | 44.575 | 341 | 182 | 2 | 6 | 342 | 96 | 433 | 3.89e-100 | 304 |
| MS.gene84472.t1 | MTR_2g096210 | 42.535 | 355 | 184 | 3 | 6 | 344 | 96 | 446 | 2.06e-99 | 302 |
| MS.gene84472.t1 | MTR_6g051440 | 45.481 | 343 | 186 | 1 | 1 | 343 | 141 | 482 | 3.97e-98 | 299 |
| MS.gene84472.t1 | MTR_1g115560 | 41.176 | 357 | 186 | 3 | 7 | 342 | 98 | 451 | 7.25e-98 | 298 |
| MS.gene84472.t1 | MTR_4g062170 | 43.553 | 349 | 182 | 3 | 6 | 342 | 96 | 441 | 1.81e-95 | 292 |
| MS.gene84472.t1 | MTR_4g053905 | 67.296 | 159 | 52 | 0 | 187 | 345 | 1 | 159 | 5.91e-76 | 231 |
| MS.gene84472.t1 | MTR_7g086260 | 59.615 | 52 | 21 | 0 | 185 | 236 | 25 | 76 | 2.57e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84472.t1 | AT1G04220 | 84.765 | 361 | 48 | 3 | 1 | 354 | 164 | 524 | 0.0 | 646 |
| MS.gene84472.t1 | AT2G26640 | 83.191 | 351 | 59 | 0 | 1 | 351 | 159 | 509 | 0.0 | 629 |
| MS.gene84472.t1 | AT5G43760 | 84.444 | 360 | 50 | 3 | 1 | 354 | 170 | 529 | 0.0 | 625 |
| MS.gene84472.t1 | AT1G01120 | 73.256 | 344 | 91 | 1 | 3 | 345 | 183 | 526 | 0.0 | 553 |
| MS.gene84472.t1 | AT1G19440 | 74.487 | 341 | 86 | 1 | 3 | 343 | 173 | 512 | 0.0 | 545 |
| MS.gene84472.t1 | AT2G16280 | 72.434 | 341 | 93 | 1 | 3 | 343 | 169 | 508 | 0.0 | 536 |
| MS.gene84472.t1 | AT4G34510 | 70.640 | 344 | 99 | 2 | 3 | 345 | 143 | 485 | 0.0 | 531 |
| MS.gene84472.t1 | AT1G68530 | 67.622 | 349 | 112 | 1 | 3 | 351 | 150 | 497 | 2.99e-180 | 509 |
| MS.gene84472.t1 | AT1G25450 | 67.049 | 349 | 114 | 1 | 3 | 351 | 145 | 492 | 2.86e-178 | 504 |
| MS.gene84472.t1 | AT2G46720 | 65.217 | 345 | 116 | 2 | 4 | 345 | 122 | 465 | 1.27e-174 | 493 |
| MS.gene84472.t1 | AT2G15090 | 65.789 | 342 | 116 | 1 | 4 | 345 | 139 | 479 | 1.24e-166 | 474 |
| MS.gene84472.t1 | AT3G10280 | 63.478 | 345 | 115 | 3 | 4 | 345 | 122 | 458 | 1.71e-166 | 473 |
| MS.gene84472.t1 | AT2G26250 | 60.942 | 361 | 115 | 2 | 9 | 343 | 188 | 548 | 2.10e-163 | 468 |
| MS.gene84472.t1 | AT4G34520 | 64.740 | 346 | 120 | 2 | 1 | 345 | 146 | 490 | 2.78e-163 | 466 |
| MS.gene84472.t1 | AT4G34250 | 65.015 | 343 | 119 | 1 | 3 | 345 | 146 | 487 | 2.78e-163 | 466 |
| MS.gene84472.t1 | AT1G71160 | 52.047 | 342 | 162 | 2 | 2 | 343 | 107 | 446 | 3.74e-130 | 380 |
| MS.gene84472.t1 | AT5G49070 | 50.704 | 355 | 168 | 3 | 1 | 351 | 110 | 461 | 7.66e-127 | 372 |
| MS.gene84472.t1 | AT3G52160 | 53.374 | 326 | 121 | 2 | 9 | 334 | 42 | 336 | 8.91e-122 | 355 |
| MS.gene84472.t1 | AT3G52160 | 53.374 | 326 | 121 | 2 | 9 | 334 | 155 | 449 | 3.64e-120 | 354 |
| MS.gene84472.t1 | AT2G28630 | 44.000 | 350 | 182 | 3 | 7 | 342 | 97 | 446 | 1.24e-102 | 310 |
| MS.gene84472.t1 | AT2G28630 | 44.000 | 350 | 182 | 3 | 7 | 342 | 97 | 446 | 1.24e-102 | 310 |
| MS.gene84472.t1 | AT1G07720 | 44.602 | 352 | 178 | 3 | 7 | 342 | 97 | 447 | 7.06e-101 | 306 |
| MS.gene84472.t1 | AT1G07720 | 44.602 | 352 | 178 | 3 | 7 | 342 | 140 | 490 | 1.47e-100 | 306 |
| MS.gene84472.t1 | AT5G04530 | 42.566 | 343 | 188 | 3 | 6 | 342 | 98 | 437 | 3.36e-98 | 299 |
| MS.gene84472.t1 | AT1G68530 | 65.500 | 200 | 69 | 0 | 3 | 202 | 150 | 349 | 2.35e-95 | 288 |
| MS.gene84472.t1 | AT5G49070 | 47.549 | 204 | 107 | 0 | 1 | 204 | 110 | 313 | 2.79e-64 | 207 |
Find 75 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTAAGGATATTGGGATTT+TGG | 0.160476 | 1.1:+24922941 | MS.gene84472:CDS |
| CAAGGATTCTTCTCCTTTGC+AGG | 0.220809 | 1.1:-24925253 | None:intergenic |
| CCTAAAGTGTCAAAAGTTAT+TGG | 0.251553 | 1.1:+24925310 | MS.gene84472:CDS |
| TGCTGGTGGAAGAGCTGTTT+TGG | 0.263824 | 1.1:+24925009 | MS.gene84472:CDS |
| CCCATTCTAAAGAGACAATT+TGG | 0.276277 | 1.1:-24924641 | None:intergenic |
| CTATTCAGTGTCATCCTTGA+TGG | 0.309908 | 1.1:-24925076 | None:intergenic |
| TGGCAAATTGCATTTGGTTC+TGG | 0.315520 | 1.1:+24925184 | MS.gene84472:CDS |
| GAGTTATAATCTTGGTGGTA+TGG | 0.329902 | 1.1:+24923046 | MS.gene84472:CDS |
| GCTTCAGCCATACAAGGATT+TGG | 0.353700 | 1.1:-24922852 | None:intergenic |
| ATAACACTAAACTGGTATTT+CGG | 0.355736 | 1.1:+24924596 | MS.gene84472:CDS |
| AAAACAAACATCACAACATT+AGG | 0.368559 | 1.1:+24924857 | MS.gene84472:CDS |
| AAAATCTTGATTTAAGTGAT+TGG | 0.369920 | 1.1:+24925044 | MS.gene84472:CDS |
| GAGGCGGTCGCGGGGCTTGT+TGG | 0.372909 | 1.1:-24924684 | None:intergenic |
| TGATTTAAGTGATTGGCATA+TGG | 0.379553 | 1.1:+24925051 | MS.gene84472:CDS |
| ACTACTAAGGCATATGAGTT+TGG | 0.381631 | 1.1:-24924560 | None:intergenic |
| GCCAAATTGTCTCTTTAGAA+TGG | 0.383170 | 1.1:+24924640 | MS.gene84472:CDS |
| AGAACTTGGCAAATTGCATT+TGG | 0.384648 | 1.1:+24925178 | MS.gene84472:CDS |
| GGTGTGAAGGCTAAGGATAT+TGG | 0.386847 | 1.1:+24922933 | MS.gene84472:CDS |
| TAGTTCTTTGTGGTATGAAT+TGG | 0.397511 | 1.1:+24925117 | MS.gene84472:CDS |
| CTTCTCCGGCAACAGCCATT+AGG | 0.398163 | 1.1:-24924829 | None:intergenic |
| CGTCTGCACCTTTGTGCGTT+CGG | 0.398737 | 1.1:-24924736 | None:intergenic |
| GACACTTTAGGCACATGAAC+AGG | 0.403570 | 1.1:-24925298 | None:intergenic |
| GTGTGAAGGCTAAGGATATT+GGG | 0.408098 | 1.1:+24922934 | MS.gene84472:CDS |
| GAAGCTGAAGAAGTTATGTT+TGG | 0.408782 | 1.1:+24922882 | MS.gene84472:CDS |
| AATTTAAAATCAGGAATGTA+TGG | 0.409132 | 1.1:-24924962 | None:intergenic |
| AGGATGACACTGAATAGATT+TGG | 0.410289 | 1.1:+24925082 | MS.gene84472:CDS |
| GATGAGGTTCTTCAGAAAAC+TGG | 0.416638 | 1.1:+24922912 | MS.gene84472:CDS |
| AAAGACCTAATGGCTGTTGC+CGG | 0.418979 | 1.1:+24924824 | MS.gene84472:CDS |
| GGTGGTATGGGTTGTAGTGC+TGG | 0.422422 | 1.1:+24923059 | MS.gene84472:CDS |
| TCAAAAGCTAATTTAAAATC+AGG | 0.424969 | 1.1:-24924971 | None:intergenic |
| TGGAGAACATAACACTAAAC+TGG | 0.426255 | 1.1:+24924588 | MS.gene84472:CDS |
| TTAAGTGTAATAGTGCTGTT+TGG | 0.431690 | 1.1:+24925209 | MS.gene84472:CDS |
| ATCACTCTCAAAAGACCTAA+TGG | 0.453901 | 1.1:+24924814 | MS.gene84472:CDS |
| CCAAATTGTCTCTTTAGAAT+GGG | 0.459229 | 1.1:+24924641 | MS.gene84472:CDS |
| TTTATAATGATTCACAATCA+TGG | 0.459935 | 1.1:-24923006 | None:intergenic |
| TTCCTTGCTTCAGCCATACA+AGG | 0.461441 | 1.1:-24922858 | None:intergenic |
| CTGCAAAGGAGAAGAATCCT+TGG | 0.462852 | 1.1:+24925254 | MS.gene84472:CDS |
| AGTTATAATCTTGGTGGTAT+GGG | 0.464051 | 1.1:+24923047 | MS.gene84472:CDS |
| TACTACCTGTAGGAGCTGTT+TGG | 0.468027 | 1.1:-24923102 | None:intergenic |
| ACACTTCAAGTAGTTCTTTG+TGG | 0.479476 | 1.1:+24925107 | MS.gene84472:CDS |
| AATATCTTGAGTTATAATCT+TGG | 0.479554 | 1.1:+24923038 | MS.gene84472:CDS |
| GTTCTCCATGCTCACTACTA+AGG | 0.483955 | 1.1:-24924573 | None:intergenic |
| GGTCGCGGGGCTTGTTGGAG+AGG | 0.485143 | 1.1:-24924679 | None:intergenic |
| TGCACCTTTGTGCGTTCGGA+CGG | 0.496713 | 1.1:-24924732 | None:intergenic |
| ATCTTGAGTTATAATCTTGG+TGG | 0.498421 | 1.1:+24923041 | MS.gene84472:CDS |
| GGTCCCACCAAATCCTTGTA+TGG | 0.505001 | 1.1:+24922845 | MS.gene84472:CDS |
| AATAAGAGCTGTTCCGACAT+AGG | 0.515411 | 1.1:-24924893 | None:intergenic |
| TGGCTTATACTGAAGCTAAA+GGG | 0.515795 | 1.1:+24925137 | MS.gene84472:CDS |
| TTCGGACGGTGTGGACTAGT+TGG | 0.519520 | 1.1:-24924718 | None:intergenic |
| TTGGCTTATACTGAAGCTAA+AGG | 0.523513 | 1.1:+24925136 | MS.gene84472:CDS |
| TCTTGCCAAACAGCTCCTAC+AGG | 0.523690 | 1.1:+24923097 | MS.gene84472:CDS |
| GAAAACTGGTGTGAAGGCTA+AGG | 0.535066 | 1.1:+24922926 | MS.gene84472:CDS |
| GTGAATCATTATAAATTGAG+AGG | 0.547414 | 1.1:+24923014 | MS.gene84472:CDS |
| TCCGACATAGGTAGGACTAA+TGG | 0.554529 | 1.1:-24924881 | None:intergenic |
| ATATGCCTTAGTAGTGAGCA+TGG | 0.583220 | 1.1:+24924568 | MS.gene84472:CDS |
| TTCTTGAAAGACGCAGCCAT+AGG | 0.587951 | 1.1:-24924765 | None:intergenic |
| CTTTGTGCGTTCGGACGGTG+TGG | 0.588769 | 1.1:-24924727 | None:intergenic |
| GAAGACTATTAATCCTGCAA+AGG | 0.592395 | 1.1:+24925240 | MS.gene84472:CDS |
| GGTGCAGACGACAAATCCTA+TGG | 0.592624 | 1.1:+24924749 | MS.gene84472:CDS |
| TCATGAATCTCATCAATCCA+AGG | 0.593092 | 1.1:-24925271 | None:intergenic |
| ACCATTAGTCCTACCTATGT+CGG | 0.593399 | 1.1:+24924880 | MS.gene84472:CDS |
| ATCCTTGTATGGCTGAAGCA+AGG | 0.595750 | 1.1:+24922856 | MS.gene84472:CDS |
| TCTTCAGAAAACTGGTGTGA+AGG | 0.595889 | 1.1:+24922920 | MS.gene84472:CDS |
| AGAGCTGTTCCGACATAGGT+AGG | 0.601625 | 1.1:-24924889 | None:intergenic |
| TCAGCCATACAAGGATTTGG+TGG | 0.603015 | 1.1:-24922849 | None:intergenic |
| AATTGTCTCTTTAGAATGGG+AGG | 0.604004 | 1.1:+24924644 | MS.gene84472:CDS |
| CAGCCATACAAGGATTTGGT+GGG | 0.605292 | 1.1:-24922848 | None:intergenic |
| ATGGCAGAGAGAGATGGTGT+TGG | 0.608196 | 1.1:-24922987 | None:intergenic |
| ACAATCATGGCAGAGAGAGA+TGG | 0.610224 | 1.1:-24922993 | None:intergenic |
| TATGTTTGGTGCTATTGATG+AGG | 0.626582 | 1.1:+24922896 | MS.gene84472:CDS |
| TTTGATCGGAGGCGGTCGCG+GGG | 0.627458 | 1.1:-24924692 | None:intergenic |
| ATTGGCATATGGAACCATCA+AGG | 0.630727 | 1.1:+24925062 | MS.gene84472:CDS |
| CACACCGTCCGAACGCACAA+AGG | 0.645075 | 1.1:+24924728 | MS.gene84472:CDS |
| CTTATACTGAAGCTAAAGGG+AGG | 0.665669 | 1.1:+24925140 | MS.gene84472:CDS |
| GAAGACGACACAAAGCAAGT+CGG | 0.719234 | 1.1:+24924788 | MS.gene84472:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATATAAAATAAAA+TGG | - | chr1.1:24924386-24924405 | None:intergenic | 0.0% |
| !!! | CTTTTGTTTATAAAATATTA+TGG | + | chr1.1:24924253-24924272 | MS.gene84472:intron | 10.0% |
| !!! | GATAAAATAATATATAGTTT+TGG | - | chr1.1:24923154-24923173 | None:intergenic | 10.0% |
| !! | AATAAAAGATCCTATAAAAA+TGG | - | chr1.1:24923704-24923723 | None:intergenic | 15.0% |
| !! | ATAAAAGATCCTATAAAAAT+GGG | - | chr1.1:24923703-24923722 | None:intergenic | 15.0% |
| !! | ATATAATCTTTATCAAATGA+TGG | + | chr1.1:24923998-24924017 | MS.gene84472:intron | 15.0% |
| !! | CATAGTTATTACTTATAATT+GGG | - | chr1.1:24924339-24924358 | None:intergenic | 15.0% |
| !!! | TAATATATAGTTTTGGATTA+TGG | - | chr1.1:24923147-24923166 | None:intergenic | 15.0% |
| !!! | TTATAAAATATTATGGGTTA+TGG | + | chr1.1:24924260-24924279 | MS.gene84472:intron | 15.0% |
| !! | AAAATCTTGATTTAAGTGAT+TGG | + | chr1.1:24925044-24925063 | MS.gene84472:CDS | 20.0% |
| !! | AAACCTAGTTATTATTATGT+AGG | - | chr1.1:24923380-24923399 | None:intergenic | 20.0% |
| !! | AACCTAGTTATTATTATGTA+GGG | - | chr1.1:24923379-24923398 | None:intergenic | 20.0% |
| !! | AATATCTTGAGTTATAATCT+TGG | + | chr1.1:24923038-24923057 | MS.gene84472:CDS | 20.0% |
| !! | ACAAAAGAAAAAAAACTAGT+TGG | - | chr1.1:24924240-24924259 | None:intergenic | 20.0% |
| !! | CTTAAAAGTTAAAAGAGATT+GGG | + | chr1.1:24923732-24923751 | MS.gene84472:intron | 20.0% |
| !! | GCATAGTTATTACTTATAAT+TGG | - | chr1.1:24924340-24924359 | None:intergenic | 20.0% |
| !! | TAAAAGATCCTATAAAAATG+GGG | - | chr1.1:24923702-24923721 | None:intergenic | 20.0% |
| !! | TAAAATAAGCATGTGAAATA+TGG | - | chr1.1:24923568-24923587 | None:intergenic | 20.0% |
| !! | TTTATAATGATTCACAATCA+TGG | - | chr1.1:24923009-24923028 | None:intergenic | 20.0% |
| !!! | AATTTAAAATCAGGAATGTA+TGG | - | chr1.1:24924965-24924984 | None:intergenic | 20.0% |
| !!! | CAATGTTTTCAAAACTAAAT+TGG | + | chr1.1:24924068-24924087 | MS.gene84472:intron | 20.0% |
| !!! | TCAAAAGCTAATTTAAAATC+AGG | - | chr1.1:24924974-24924993 | None:intergenic | 20.0% |
| !!! | TTATTTTGGAATATGGATTA+TGG | - | chr1.1:24924427-24924446 | None:intergenic | 20.0% |
| !!! | TTTAAAATCTAAACTTGTCA+TGG | - | chr1.1:24924196-24924215 | None:intergenic | 20.0% |
| ! | AAAACAAACATCACAACATT+AGG | + | chr1.1:24924857-24924876 | MS.gene84472:CDS | 25.0% |
| ! | AAATAAATTATATCCACGAG+TGG | - | chr1.1:24923652-24923671 | None:intergenic | 25.0% |
| ! | AATTTAGTGATTGTGTTCAA+AGG | + | chr1.1:24923595-24923614 | MS.gene84472:intron | 25.0% |
| ! | ACCTAGTTATTATTATGTAG+GGG | - | chr1.1:24923378-24923397 | None:intergenic | 25.0% |
| ! | ACTAAATTGGATGATTCAAT+TGG | + | chr1.1:24924081-24924100 | MS.gene84472:intron | 25.0% |
| ! | AGATATAATATACTACCTGT+AGG | - | chr1.1:24923115-24923134 | None:intergenic | 25.0% |
| ! | ATAACACTAAACTGGTATTT+CGG | + | chr1.1:24924596-24924615 | MS.gene84472:CDS | 25.0% |
| ! | CCATATTCCAAAATAACAAT+TGG | + | chr1.1:24924431-24924450 | MS.gene84472:intron | 25.0% |
| ! | CCATGATAAACAATGTATAT+AGG | + | chr1.1:24924532-24924551 | MS.gene84472:intron | 25.0% |
| ! | CCTATATACATTGTTTATCA+TGG | - | chr1.1:24924535-24924554 | None:intergenic | 25.0% |
| ! | GCTTAAAAGTTAAAAGAGAT+TGG | + | chr1.1:24923731-24923750 | MS.gene84472:intron | 25.0% |
| ! | GTGAATCATTATAAATTGAG+AGG | + | chr1.1:24923014-24923033 | MS.gene84472:CDS | 25.0% |
| ! | TTAAAAAAGGTGATAGAACT+TGG | + | chr1.1:24925164-24925183 | MS.gene84472:CDS | 25.0% |
| !! | AATTCAAGTTCATTTCTTCT+TGG | + | chr1.1:24923463-24923482 | MS.gene84472:intron | 25.0% |
| !! | TGATAACGATTTATTGTCTA+TGG | - | chr1.1:24924050-24924069 | None:intergenic | 25.0% |
| !!! | AATTTTGGAGGGTATTAATT+AGG | - | chr1.1:24923824-24923843 | None:intergenic | 25.0% |
| !!! | CCAATTGTTATTTTGGAATA+TGG | - | chr1.1:24924434-24924453 | None:intergenic | 25.0% |
| !!! | GGATTTGTTAACAAGATTTA+AGG | - | chr1.1:24924365-24924384 | None:intergenic | 25.0% |
| !!! | TTGTGATCCAATTGTTATTT+TGG | - | chr1.1:24924441-24924460 | None:intergenic | 25.0% |
| !!! | TTTAAAACATTGATTTGCAC+AGG | + | chr1.1:24924210-24924229 | MS.gene84472:intron | 25.0% |
| AAAAAAGGGTCCATAACTAT+GGG | - | chr1.1:24923863-24923882 | None:intergenic | 30.0% | |
| ATCTTGAGTTATAATCTTGG+TGG | + | chr1.1:24923041-24923060 | MS.gene84472:CDS | 30.0% | |
| CTACGTGCATGTTAATATTT+AGG | + | chr1.1:24923620-24923639 | MS.gene84472:intron | 30.0% | |
| TAAAAAAGGGTCCATAACTA+TGG | - | chr1.1:24923864-24923883 | None:intergenic | 30.0% | |
| TAGTTCTTTGTGGTATGAAT+TGG | + | chr1.1:24925117-24925136 | MS.gene84472:CDS | 30.0% | |
| TCCCCTACATAATAATAACT+AGG | + | chr1.1:24923374-24923393 | MS.gene84472:intron | 30.0% | |
| TGATTTAAGTGATTGGCATA+TGG | + | chr1.1:24925051-24925070 | MS.gene84472:CDS | 30.0% | |
| TTCTTGTAGTCTTCTGTATT+AGG | - | chr1.1:24923445-24923464 | None:intergenic | 30.0% | |
| ! | AGTTATAATCTTGGTGGTAT+GGG | + | chr1.1:24923047-24923066 | MS.gene84472:CDS | 30.0% |
| ! | CAATTGGATCACAAGTTTTT+CGG | + | chr1.1:24924447-24924466 | MS.gene84472:intron | 30.0% |
| ! | CCAATAACTTTTGACACTTT+AGG | - | chr1.1:24925313-24925332 | None:intergenic | 30.0% |
| ! | CCTAAAGTGTCAAAAGTTAT+TGG | + | chr1.1:24925310-24925329 | MS.gene84472:CDS | 30.0% |
| ! | TTAAGTGTAATAGTGCTGTT+TGG | + | chr1.1:24925209-24925228 | MS.gene84472:CDS | 30.0% |
| !! | CCAAATTGTCTCTTTAGAAT+GGG | + | chr1.1:24924641-24924660 | MS.gene84472:CDS | 30.0% |
| !! | GTTTGACAACAGTTTTGTAT+CGG | + | chr1.1:24924141-24924160 | MS.gene84472:intron | 30.0% |
| ACACTTCAAGTAGTTCTTTG+TGG | + | chr1.1:24925107-24925126 | MS.gene84472:CDS | 35.0% | |
| ACTACTAAGGCATATGAGTT+TGG | - | chr1.1:24924563-24924582 | None:intergenic | 35.0% | |
| AGAACTTGGCAAATTGCATT+TGG | + | chr1.1:24925178-24925197 | MS.gene84472:CDS | 35.0% | |
| AGGATGACACTGAATAGATT+TGG | + | chr1.1:24925082-24925101 | MS.gene84472:CDS | 35.0% | |
| ATCACTCTCAAAAGACCTAA+TGG | + | chr1.1:24924814-24924833 | MS.gene84472:CDS | 35.0% | |
| ATCCAAGTTTCCCATAGTTA+TGG | + | chr1.1:24923850-24923869 | MS.gene84472:intron | 35.0% | |
| ATGATTCCAAGACTCTAACA+TGG | + | chr1.1:24923494-24923513 | MS.gene84472:intron | 35.0% | |
| GAAGACTATTAATCCTGCAA+AGG | + | chr1.1:24925240-24925259 | MS.gene84472:CDS | 35.0% | |
| GAAGCTGAAGAAGTTATGTT+TGG | + | chr1.1:24922882-24922901 | MS.gene84472:CDS | 35.0% | |
| GCCACTGTCAACATAAAAAA+GGG | - | chr1.1:24923877-24923896 | None:intergenic | 35.0% | |
| GCTAAAGGGAGGATTAAAAA+AGG | + | chr1.1:24925151-24925170 | MS.gene84472:CDS | 35.0% | |
| TACAACCTGTACGTTTGAAT+TGG | - | chr1.1:24923767-24923786 | None:intergenic | 35.0% | |
| TCAAGTCAAAGAATCTTCTG+CGG | - | chr1.1:24923353-24923372 | None:intergenic | 35.0% | |
| TCATGAATCTCATCAATCCA+AGG | - | chr1.1:24925274-24925293 | None:intergenic | 35.0% | |
| TGGAGAACATAACACTAAAC+TGG | + | chr1.1:24924588-24924607 | MS.gene84472:CDS | 35.0% | |
| TGGCTTATACTGAAGCTAAA+GGG | + | chr1.1:24925137-24925156 | MS.gene84472:CDS | 35.0% | |
| TTATGGTTATCCAACTAGCA+AGG | + | chr1.1:24924277-24924296 | MS.gene84472:intron | 35.0% | |
| TTCAAACGTACAGGTTGTAA+AGG | + | chr1.1:24923768-24923787 | MS.gene84472:intron | 35.0% | |
| TTGGCTTATACTGAAGCTAA+AGG | + | chr1.1:24925136-24925155 | MS.gene84472:CDS | 35.0% | |
| ! | AACTTGGATGCATGGAATTT+TGG | - | chr1.1:24923839-24923858 | None:intergenic | 35.0% |
| ! | ATTTAGGTATTTTCCACTCG+TGG | + | chr1.1:24923636-24923655 | MS.gene84472:intron | 35.0% |
| ! | CATTTTTGTATTCATGCTGG+TGG | + | chr1.1:24924995-24925014 | MS.gene84472:CDS | 35.0% |
| ! | CCCATTCTAAAGAGACAATT+TGG | - | chr1.1:24924644-24924663 | None:intergenic | 35.0% |
| ! | GAGCATTTTTGTATTCATGC+TGG | + | chr1.1:24924992-24925011 | MS.gene84472:CDS | 35.0% |
| ! | GAGTTATAATCTTGGTGGTA+TGG | + | chr1.1:24923046-24923065 | MS.gene84472:CDS | 35.0% |
| ! | GCCAAATTGTCTCTTTAGAA+TGG | + | chr1.1:24924640-24924659 | MS.gene84472:CDS | 35.0% |
| !! | AATTGTCTCTTTAGAATGGG+AGG | + | chr1.1:24924644-24924663 | MS.gene84472:CDS | 35.0% |
| !! | TAACTTGTTTCCTTGCTAGT+TGG | - | chr1.1:24924290-24924309 | None:intergenic | 35.0% |
| !! | TATGTTTGGTGCTATTGATG+AGG | + | chr1.1:24922896-24922915 | MS.gene84472:CDS | 35.0% |
| !! | TTGGAGGGTATTAATTAGGT+TGG | - | chr1.1:24923820-24923839 | None:intergenic | 35.0% |
| !!! | ACCCTTTTTTATGTTGACAG+TGG | + | chr1.1:24923873-24923892 | MS.gene84472:intron | 35.0% |
| !!! | GGACTAGTTGGTATTTTGAT+CGG | - | chr1.1:24924709-24924728 | None:intergenic | 35.0% |
| !!! | TCGGAACAGCTCTTATTTTT+CGG | + | chr1.1:24924899-24924918 | MS.gene84472:CDS | 35.0% |
| AATAAGAGCTGTTCCGACAT+AGG | - | chr1.1:24924896-24924915 | None:intergenic | 40.0% | |
| AATCTTCTGCGGTCTGAATT+AGG | - | chr1.1:24923342-24923361 | None:intergenic | 40.0% | |
| ACCATTAGTCCTACCTATGT+CGG | + | chr1.1:24924880-24924899 | MS.gene84472:CDS | 40.0% | |
| AGACTCTAACATGGAGACAT+AGG | + | chr1.1:24923503-24923522 | MS.gene84472:intron | 40.0% | |
| ATATGCCTTAGTAGTGAGCA+TGG | + | chr1.1:24924568-24924587 | MS.gene84472:CDS | 40.0% | |
| ATGTCTCCATGTTAGAGTCT+TGG | - | chr1.1:24923503-24923522 | None:intergenic | 40.0% | |
| ATTGGCATATGGAACCATCA+AGG | + | chr1.1:24925062-24925081 | MS.gene84472:CDS | 40.0% | |
| CTATTCAGTGTCATCCTTGA+TGG | - | chr1.1:24925079-24925098 | None:intergenic | 40.0% | |
| CTGATCCAATTCAAACGTAC+AGG | + | chr1.1:24923759-24923778 | MS.gene84472:intron | 40.0% | |
| CTTATACTGAAGCTAAAGGG+AGG | + | chr1.1:24925140-24925159 | MS.gene84472:CDS | 40.0% | |
| GATGAGGTTCTTCAGAAAAC+TGG | + | chr1.1:24922912-24922931 | MS.gene84472:CDS | 40.0% | |
| GCCGTTTGATGAAAATCAGA+CGG | + | chr1.1:24923944-24923963 | MS.gene84472:intron | 40.0% | |
| GGCCACTGTCAACATAAAAA+AGG | - | chr1.1:24923878-24923897 | None:intergenic | 40.0% | |
| GTACAGGTTGTAAAGGTTGT+TGG | + | chr1.1:24923775-24923794 | MS.gene84472:intron | 40.0% | |
| GTCCATAACTATGGGAAACT+TGG | - | chr1.1:24923855-24923874 | None:intergenic | 40.0% | |
| GTGATTTATGTGACCACACA+AGG | - | chr1.1:24923899-24923918 | None:intergenic | 40.0% | |
| GTGTGAAGGCTAAGGATATT+GGG | + | chr1.1:24922934-24922953 | MS.gene84472:CDS | 40.0% | |
| TCACAACAGTTCGTTGAGAT+TGG | - | chr1.1:24923309-24923328 | None:intergenic | 40.0% | |
| TCTCAACGAACTGTTGTGAT+TGG | + | chr1.1:24923310-24923329 | MS.gene84472:intron | 40.0% | |
| TCTTCAGAAAACTGGTGTGA+AGG | + | chr1.1:24922920-24922939 | MS.gene84472:CDS | 40.0% | |
| TGTTTAGTCCAATCACCAAC+CGG | - | chr1.1:24923224-24923243 | None:intergenic | 40.0% | |
| TTTCATCAAACGGCTGCAAT+TGG | - | chr1.1:24923938-24923957 | None:intergenic | 40.0% | |
| ! | GCCGTCTGATTTTCATCAAA+CGG | - | chr1.1:24923948-24923967 | None:intergenic | 40.0% |
| ! | GGCTAAGGATATTGGGATTT+TGG | + | chr1.1:24922941-24922960 | MS.gene84472:CDS | 40.0% |
| ! | TCGTAGTTGTTGACTGAGAT+TGG | - | chr1.1:24923406-24923425 | None:intergenic | 40.0% |
| ! | TGGATGCATGGAATTTTGGA+GGG | - | chr1.1:24923835-24923854 | None:intergenic | 40.0% |
| ! | TGGCAAATTGCATTTGGTTC+TGG | + | chr1.1:24925184-24925203 | MS.gene84472:CDS | 40.0% |
| ! | TTGGATGCATGGAATTTTGG+AGG | - | chr1.1:24923836-24923855 | None:intergenic | 40.0% |
| !! | AAGAGCTGTTTTGGATGAGT+TGG | + | chr1.1:24925018-24925037 | MS.gene84472:CDS | 40.0% |
| !! | GAATGGAGCCCCATTTTTAT+AGG | + | chr1.1:24923691-24923710 | MS.gene84472:intron | 40.0% |
| !!! | CGGAACAGCTCTTATTTTTC+GGG | + | chr1.1:24924900-24924919 | MS.gene84472:CDS | 40.0% |
| !!! | CTAGTTGGTATTTTGATCGG+AGG | - | chr1.1:24924706-24924725 | None:intergenic | 40.0% |
| !!! | GCTCTTATTTTTCGGGACAT+TGG | + | chr1.1:24924907-24924926 | MS.gene84472:CDS | 40.0% |
| !!! | GGTTGTTGGAAGTTTTTTGC+TGG | + | chr1.1:24923789-24923808 | MS.gene84472:intron | 40.0% |
| !!! | GTTTGTTTTGAGTGCTTCTC+CGG | - | chr1.1:24924846-24924865 | None:intergenic | 40.0% |
| AAAGACCTAATGGCTGTTGC+CGG | + | chr1.1:24924824-24924843 | MS.gene84472:CDS | 45.0% | |
| ACAATCATGGCAGAGAGAGA+TGG | - | chr1.1:24922996-24923015 | None:intergenic | 45.0% | |
| ATCCTTGTATGGCTGAAGCA+AGG | + | chr1.1:24922856-24922875 | MS.gene84472:CDS | 45.0% | |
| ATTTATGCCAAGCCGCCTAA+GGG | + | chr1.1:24923668-24923687 | MS.gene84472:intron | 45.0% | |
| CAAGGATTCTTCTCCTTTGC+AGG | - | chr1.1:24925256-24925275 | None:intergenic | 45.0% | |
| CTATGGGAAACTTGGATGCA+TGG | - | chr1.1:24923847-24923866 | None:intergenic | 45.0% | |
| CTGCAAAGGAGAAGAATCCT+TGG | + | chr1.1:24925254-24925273 | MS.gene84472:CDS | 45.0% | |
| GAAAACTGGTGTGAAGGCTA+AGG | + | chr1.1:24922926-24922945 | MS.gene84472:CDS | 45.0% | |
| GAAGACGACACAAAGCAAGT+CGG | + | chr1.1:24924788-24924807 | MS.gene84472:CDS | 45.0% | |
| GACACTTTAGGCACATGAAC+AGG | - | chr1.1:24925301-24925320 | None:intergenic | 45.0% | |
| GCTTCAGCCATACAAGGATT+TGG | - | chr1.1:24922855-24922874 | None:intergenic | 45.0% | |
| GGTGTGAAGGCTAAGGATAT+TGG | + | chr1.1:24922933-24922952 | MS.gene84472:CDS | 45.0% | |
| GTTCTCCATGCTCACTACTA+AGG | - | chr1.1:24924576-24924595 | None:intergenic | 45.0% | |
| TACTACCTGTAGGAGCTGTT+TGG | - | chr1.1:24923105-24923124 | None:intergenic | 45.0% | |
| TATTTATGCCAAGCCGCCTA+AGG | + | chr1.1:24923667-24923686 | MS.gene84472:intron | 45.0% | |
| TCAACAACTACGACTGCGAT+TGG | + | chr1.1:24923413-24923432 | MS.gene84472:intron | 45.0% | |
| TCAGCCATACAAGGATTTGG+TGG | - | chr1.1:24922852-24922871 | None:intergenic | 45.0% | |
| TCCGACATAGGTAGGACTAA+TGG | - | chr1.1:24924884-24924903 | None:intergenic | 45.0% | |
| TTCCTTGCTTCAGCCATACA+AGG | - | chr1.1:24922861-24922880 | None:intergenic | 45.0% | |
| TTCTTGAAAGACGCAGCCAT+AGG | - | chr1.1:24924768-24924787 | None:intergenic | 45.0% | |
| ! | CAGCCATACAAGGATTTGGT+GGG | - | chr1.1:24922851-24922870 | None:intergenic | 45.0% |
| ! | CAGTAGACGATGTCACTTCA+CGG | - | chr1.1:24924112-24924131 | None:intergenic | 45.0% |
| !!! | GTTGGTATTTTGATCGGAGG+CGG | - | chr1.1:24924703-24924722 | None:intergenic | 45.0% |
| !!! | TTTTGTTTATAAAATATTAT+GGG | + | chr1.1:24924254-24924273 | MS.gene84472:intron | 5.0% |
| AGAGCTGTTCCGACATAGGT+AGG | - | chr1.1:24924892-24924911 | None:intergenic | 50.0% | |
| ATCCAATCGCACTCGTTGAC+CGG | + | chr1.1:24923202-24923221 | MS.gene84472:intron | 50.0% | |
| ATGGCAGAGAGAGATGGTGT+TGG | - | chr1.1:24922990-24923009 | None:intergenic | 50.0% | |
| GGTCCCACCAAATCCTTGTA+TGG | + | chr1.1:24922845-24922864 | MS.gene84472:CDS | 50.0% | |
| GGTGCAGACGACAAATCCTA+TGG | + | chr1.1:24924749-24924768 | MS.gene84472:CDS | 50.0% | |
| TCTTGCCAAACAGCTCCTAC+AGG | + | chr1.1:24923097-24923116 | MS.gene84472:CDS | 50.0% | |
| TTTATGCCAAGCCGCCTAAG+GGG | + | chr1.1:24923669-24923688 | MS.gene84472:intron | 50.0% | |
| ! | TGCTGGTGGAAGAGCTGTTT+TGG | + | chr1.1:24925009-24925028 | MS.gene84472:CDS | 50.0% |
| !! | ATGTTGACAGTGGCCTTGTG+TGG | + | chr1.1:24923883-24923902 | MS.gene84472:intron | 50.0% |
| AACCGGTCAACGAGTGCGAT+TGG | - | chr1.1:24923207-24923226 | None:intergenic | 55.0% | |
| AATCGCACTCGTTGACCGGT+TGG | + | chr1.1:24923206-24923225 | MS.gene84472:intron | 55.0% | |
| AATGGGGCTCCATTCCCCTT+AGG | - | chr1.1:24923686-24923705 | None:intergenic | 55.0% | |
| CGTCTGCACCTTTGTGCGTT+CGG | - | chr1.1:24924739-24924758 | None:intergenic | 55.0% | |
| CTTCTCCGGCAACAGCCATT+AGG | - | chr1.1:24924832-24924851 | None:intergenic | 55.0% | |
| TGCACCTTTGTGCGTTCGGA+CGG | - | chr1.1:24924735-24924754 | None:intergenic | 55.0% | |
| ! | GGTGGTATGGGTTGTAGTGC+TGG | + | chr1.1:24923059-24923078 | MS.gene84472:CDS | 55.0% |
| !! | ATTTTGATCGGAGGCGGTCG+CGG | - | chr1.1:24924697-24924716 | None:intergenic | 55.0% |
| !! | CTCGTTGACCGGTTGGTGAT+TGG | + | chr1.1:24923213-24923232 | MS.gene84472:intron | 55.0% |
| !! | TTCGGACGGTGTGGACTAGT+TGG | - | chr1.1:24924721-24924740 | None:intergenic | 55.0% |
| CACACCGTCCGAACGCACAA+AGG | + | chr1.1:24924728-24924747 | MS.gene84472:CDS | 60.0% | |
| CTTTGTGCGTTCGGACGGTG+TGG | - | chr1.1:24924730-24924749 | None:intergenic | 60.0% | |
| TCCATTCCCCTTAGGCGGCT+TGG | - | chr1.1:24923678-24923697 | None:intergenic | 60.0% | |
| ! | TTTTGATCGGAGGCGGTCGC+GGG | - | chr1.1:24924696-24924715 | None:intergenic | 60.0% |
| GCCAAGCCGCCTAAGGGGAA+TGG | + | chr1.1:24923674-24923693 | MS.gene84472:intron | 65.0% | |
| GGGGCTCCATTCCCCTTAGG+CGG | - | chr1.1:24923683-24923702 | None:intergenic | 65.0% | |
| TTTGATCGGAGGCGGTCGCG+GGG | - | chr1.1:24924695-24924714 | None:intergenic | 65.0% | |
| !! | GGTCGCGGGGCTTGTTGGAG+AGG | - | chr1.1:24924682-24924701 | None:intergenic | 70.0% |
| GAGGCGGTCGCGGGGCTTGT+TGG | - | chr1.1:24924687-24924706 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 24922840 | 24925339 | 24922840 | ID=MS.gene84472 |
| chr1.1 | mRNA | 24922840 | 24925339 | 24922840 | ID=MS.gene84472.t1;Parent=MS.gene84472 |
| chr1.1 | exon | 24922840 | 24923118 | 24922840 | ID=MS.gene84472.t1.exon1;Parent=MS.gene84472.t1 |
| chr1.1 | CDS | 24922840 | 24923118 | 24922840 | ID=cds.MS.gene84472.t1;Parent=MS.gene84472.t1 |
| chr1.1 | exon | 24924554 | 24925339 | 24924554 | ID=MS.gene84472.t1.exon2;Parent=MS.gene84472.t1 |
| chr1.1 | CDS | 24924554 | 24925339 | 24924554 | ID=cds.MS.gene84472.t1;Parent=MS.gene84472.t1 |
| Gene Sequence |
| Protein sequence |
