Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85978.t1 | XP_024627594.1 | 90 | 239 | 21 | 2 | 1 | 239 | 1 | 236 | 1.40E-108 | 402.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85978.t1 | O81223 | 60.0 | 220 | 82 | 1 | 19 | 238 | 3 | 216 | 6.9e-69 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85978.t1 | G8A2Y4 | 90.0 | 239 | 21 | 2 | 1 | 239 | 1 | 236 | 9.7e-109 | 402.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene85978 | 0.828043 | 1.12E-54 | -1.69E-46 |
| MS.gene04919 | MS.gene85978 | 0.812712 | 3.69E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene85978 | 0.826339 | 2.86E-54 | -1.69E-46 |
| MS.gene049254 | MS.gene85978 | 0.816111 | 6.54E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene85978 | 0.849937 | 2.35E-60 | -1.69E-46 |
| MS.gene049499 | MS.gene85978 | 0.831832 | 1.34E-55 | -1.69E-46 |
| MS.gene049825 | MS.gene85978 | 0.824131 | 9.53E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene85978 | 0.803651 | 3.15E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene85978 | 0.81312 | 3.01E-51 | -1.69E-46 |
| MS.gene051699 | MS.gene85978 | 0.819318 | 1.24E-52 | -1.69E-46 |
| MS.gene051832 | MS.gene85978 | 0.810548 | 1.09E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene85978 | 0.822381 | 2.44E-53 | -1.69E-46 |
| MS.gene051902 | MS.gene85978 | 0.810456 | 1.14E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene85978 | 0.825152 | 5.48E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene85978 | 0.810505 | 1.12E-50 | -1.69E-46 |
| MS.gene052534 | MS.gene85978 | 0.822737 | 2.02E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene85978 | 0.804875 | 1.75E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene85978 | 0.817507 | 3.18E-52 | -1.69E-46 |
| MS.gene052685 | MS.gene85978 | 0.833208 | 6.09E-56 | -1.69E-46 |
| MS.gene052889 | MS.gene85978 | 0.818508 | 1.89E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene85978 | 0.80371 | 3.06E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene85978 | 0.835579 | 1.55E-56 | -1.69E-46 |
| MS.gene053321 | MS.gene85978 | 0.802142 | 6.46E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene85978 | 0.811214 | 7.83E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene85978 | 0.802486 | 5.48E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene85978 | 0.86088 | 1.52E-63 | -1.69E-46 |
| MS.gene054222 | MS.gene85978 | 0.848538 | 5.75E-60 | -1.69E-46 |
| MS.gene054479 | MS.gene85978 | 0.816531 | 5.27E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene85978 | 0.831961 | 1.24E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene85978 | 0.807061 | 6.07E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene85978 | 0.808919 | 2.44E-50 | -1.69E-46 |
| MS.gene054957 | MS.gene85978 | 0.825415 | 4.75E-54 | -1.69E-46 |
| MS.gene055555 | MS.gene85978 | 0.805878 | 1.08E-49 | -1.69E-46 |
| MS.gene056068 | MS.gene85978 | 0.82635 | 2.85E-54 | -1.69E-46 |
| MS.gene056091 | MS.gene85978 | 0.817803 | 2.73E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene85978 | 0.80654 | 7.83E-50 | -1.69E-46 |
| MS.gene05636 | MS.gene85978 | 0.828645 | 8.01E-55 | -1.69E-46 |
| MS.gene056403 | MS.gene85978 | 0.843628 | 1.25E-58 | -1.69E-46 |
| MS.gene056605 | MS.gene85978 | 0.839137 | 1.90E-57 | -1.69E-46 |
| MS.gene05689 | MS.gene85978 | 0.848391 | 6.32E-60 | -1.69E-46 |
| MS.gene056986 | MS.gene85978 | 0.838257 | 3.20E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene85978 | 0.846788 | 1.74E-59 | -1.69E-46 |
| MS.gene057208 | MS.gene85978 | 0.807558 | 4.77E-50 | -1.69E-46 |
| MS.gene057890 | MS.gene85978 | -0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene057893 | MS.gene85978 | -0.834452 | 2.97E-56 | -1.69E-46 |
| MS.gene058159 | MS.gene85978 | 0.85872 | 6.79E-63 | -1.69E-46 |
| MS.gene058279 | MS.gene85978 | 0.808936 | 2.42E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene85978 | 0.803767 | 2.98E-49 | -1.69E-46 |
| MS.gene058500 | MS.gene85978 | 0.805326 | 1.41E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene85978 | 0.816756 | 4.69E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene85978 | 0.802617 | 5.15E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene85978 | 0.806673 | 7.34E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene85978 | 0.819838 | 9.41E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene85978 | -0.853595 | 2.15E-61 | -1.69E-46 |
| MS.gene059901 | MS.gene85978 | -0.816121 | 6.51E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene85978 | 0.837448 | 5.17E-57 | -1.69E-46 |
| MS.gene060012 | MS.gene85978 | 0.815459 | 9.15E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene85978 | 0.832709 | 8.10E-56 | -1.69E-46 |
| MS.gene060365 | MS.gene85978 | 0.84161 | 4.28E-58 | -1.69E-46 |
| MS.gene060435 | MS.gene85978 | 0.801395 | 9.19E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene85978 | 0.803731 | 3.03E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene85978 | 0.820137 | 8.04E-53 | -1.69E-46 |
| MS.gene060879 | MS.gene85978 | 0.818809 | 1.61E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene85978 | 0.813451 | 2.54E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene85978 | 0.825906 | 3.63E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene85978 | 0.842264 | 2.88E-58 | -1.69E-46 |
| MS.gene061188 | MS.gene85978 | 0.821142 | 4.73E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85978.t1 | MTR_8g027620 | 94.979 | 239 | 9 | 2 | 1 | 239 | 1 | 236 | 5.50e-164 | 455 |
| MS.gene85978.t1 | MTR_3g091440 | 68.020 | 197 | 63 | 0 | 42 | 238 | 17 | 213 | 5.76e-95 | 278 |
| MS.gene85978.t1 | MTR_3g091440 | 65.445 | 191 | 66 | 0 | 48 | 238 | 24 | 214 | 5.02e-88 | 260 |
| MS.gene85978.t1 | MTR_8g099575 | 61.026 | 195 | 76 | 0 | 42 | 236 | 16 | 210 | 2.50e-84 | 250 |
| MS.gene85978.t1 | MTR_4g099210 | 55.897 | 195 | 86 | 0 | 42 | 236 | 16 | 210 | 1.75e-77 | 233 |
| MS.gene85978.t1 | MTR_1g016430 | 56.923 | 195 | 84 | 0 | 40 | 234 | 53 | 247 | 8.85e-76 | 229 |
| MS.gene85978.t1 | MTR_3g060730 | 53.659 | 205 | 93 | 1 | 35 | 237 | 22 | 226 | 9.15e-76 | 229 |
| MS.gene85978.t1 | MTR_4g134250 | 55.208 | 192 | 86 | 0 | 46 | 237 | 36 | 227 | 2.07e-75 | 228 |
| MS.gene85978.t1 | MTR_5g096420 | 55.102 | 196 | 88 | 0 | 42 | 237 | 31 | 226 | 4.40e-75 | 227 |
| MS.gene85978.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 1 | 181 | 1.86e-72 | 219 |
| MS.gene85978.t1 | MTR_3g060730 | 54.891 | 184 | 83 | 0 | 54 | 237 | 5 | 188 | 3.36e-72 | 218 |
| MS.gene85978.t1 | MTR_8g099570 | 50.505 | 198 | 98 | 0 | 42 | 239 | 58 | 255 | 1.97e-71 | 219 |
| MS.gene85978.t1 | MTR_2g027500 | 48.858 | 219 | 102 | 1 | 19 | 237 | 16 | 224 | 3.74e-71 | 217 |
| MS.gene85978.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 99 | 279 | 1.24e-70 | 218 |
| MS.gene85978.t1 | MTR_2g027440 | 52.688 | 186 | 88 | 0 | 51 | 236 | 43 | 228 | 5.16e-66 | 204 |
| MS.gene85978.t1 | MTR_3g091440 | 70.213 | 141 | 42 | 0 | 42 | 182 | 17 | 157 | 4.79e-65 | 200 |
| MS.gene85978.t1 | MTR_2g027480 | 52.151 | 186 | 89 | 0 | 51 | 236 | 43 | 228 | 2.08e-64 | 200 |
| MS.gene85978.t1 | MTR_2g027520 | 48.705 | 193 | 99 | 0 | 47 | 239 | 41 | 233 | 1.26e-62 | 196 |
| MS.gene85978.t1 | MTR_8g016170 | 52.151 | 186 | 89 | 0 | 47 | 232 | 66 | 251 | 2.56e-61 | 193 |
| MS.gene85978.t1 | MTR_5g013560 | 48.205 | 195 | 90 | 1 | 42 | 236 | 15 | 198 | 2.59e-59 | 186 |
| MS.gene85978.t1 | MTR_8g016170 | 53.488 | 172 | 80 | 0 | 47 | 218 | 47 | 218 | 1.09e-57 | 182 |
| MS.gene85978.t1 | MTR_4g113505 | 44.624 | 186 | 103 | 0 | 53 | 238 | 6 | 191 | 1.03e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85978.t1 | AT5G24270 | 57.203 | 236 | 79 | 1 | 1 | 236 | 1 | 214 | 4.05e-93 | 273 |
| MS.gene85978.t1 | AT5G24270 | 57.203 | 236 | 79 | 1 | 1 | 236 | 1 | 214 | 4.05e-93 | 273 |
| MS.gene85978.t1 | AT5G24270 | 57.203 | 236 | 79 | 1 | 1 | 236 | 1 | 214 | 4.05e-93 | 273 |
| MS.gene85978.t1 | AT5G24270 | 63.298 | 188 | 69 | 0 | 51 | 238 | 4 | 191 | 1.86e-86 | 255 |
| MS.gene85978.t1 | AT1G64480 | 59.487 | 195 | 79 | 0 | 42 | 236 | 20 | 214 | 2.71e-78 | 235 |
| MS.gene85978.t1 | AT1G64480 | 59.487 | 195 | 79 | 0 | 42 | 236 | 20 | 214 | 2.71e-78 | 235 |
| MS.gene85978.t1 | AT1G64480 | 59.487 | 195 | 79 | 0 | 42 | 236 | 20 | 214 | 2.71e-78 | 235 |
| MS.gene85978.t1 | AT5G24270 | 63.975 | 161 | 58 | 0 | 76 | 236 | 7 | 167 | 7.74e-76 | 227 |
| MS.gene85978.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 3.02e-74 | 224 |
| MS.gene85978.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 3.02e-74 | 224 |
| MS.gene85978.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 3.02e-74 | 224 |
| MS.gene85978.t1 | AT5G47100 | 55.789 | 190 | 84 | 0 | 47 | 236 | 21 | 210 | 4.98e-74 | 224 |
| MS.gene85978.t1 | AT4G33000 | 57.216 | 194 | 83 | 0 | 43 | 236 | 53 | 246 | 7.18e-74 | 225 |
| MS.gene85978.t1 | AT4G26570 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 7.68e-74 | 224 |
| MS.gene85978.t1 | AT4G33000 | 57.216 | 194 | 83 | 0 | 43 | 236 | 63 | 256 | 1.32e-73 | 224 |
| MS.gene85978.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 2.00e-72 | 220 |
| MS.gene85978.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 2.00e-72 | 220 |
| MS.gene85978.t1 | AT4G26570 | 52.764 | 199 | 90 | 1 | 43 | 237 | 32 | 230 | 1.22e-71 | 218 |
| MS.gene85978.t1 | AT1G64480 | 59.887 | 177 | 71 | 0 | 42 | 218 | 20 | 196 | 4.56e-70 | 213 |
| MS.gene85978.t1 | AT4G17615 | 55.249 | 181 | 81 | 0 | 42 | 222 | 16 | 196 | 8.96e-67 | 207 |
| MS.gene85978.t1 | AT4G01420 | 47.739 | 199 | 104 | 0 | 31 | 229 | 4 | 202 | 5.73e-62 | 193 |
| MS.gene85978.t1 | AT4G16350 | 50.259 | 193 | 92 | 1 | 47 | 239 | 34 | 222 | 6.14e-61 | 191 |
| MS.gene85978.t1 | AT4G16350 | 50.259 | 193 | 92 | 1 | 47 | 239 | 34 | 222 | 6.14e-61 | 191 |
| MS.gene85978.t1 | AT4G17615 | 54.777 | 157 | 71 | 0 | 80 | 236 | 12 | 168 | 8.03e-61 | 189 |
| MS.gene85978.t1 | AT4G01420 | 47.872 | 188 | 98 | 0 | 31 | 218 | 4 | 191 | 3.46e-58 | 183 |
| MS.gene85978.t1 | AT4G26560 | 45.789 | 190 | 90 | 1 | 61 | 237 | 25 | 214 | 1.48e-55 | 177 |
| MS.gene85978.t1 | AT5G47100 | 52.899 | 138 | 65 | 0 | 47 | 184 | 21 | 158 | 7.59e-49 | 159 |
| MS.gene85978.t1 | AT4G33000 | 54.861 | 144 | 65 | 0 | 43 | 186 | 53 | 196 | 3.57e-47 | 155 |
| MS.gene85978.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 3.62e-47 | 155 |
| MS.gene85978.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 3.62e-47 | 155 |
| MS.gene85978.t1 | AT4G33000 | 54.348 | 92 | 42 | 0 | 43 | 134 | 53 | 144 | 1.25e-24 | 95.9 |
Find 32 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | 8.2:-70159564 | None:intergenic |
| GGATATGGTGTTGATGATTT+TGG | 0.239699 | 8.2:+70159918 | MS.gene85978:CDS |
| AAAAGTAGCAGAAAATATTA+TGG | 0.327214 | 8.2:+70158354 | MS.gene85978:CDS |
| TTCTGCGCTCAGCATAAAAC+TGG | 0.328781 | 8.2:-70160298 | None:intergenic |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | 8.2:-70159518 | None:intergenic |
| GGCGAATTTATCAGATCTTT+AGG | 0.334304 | 8.2:+70159531 | MS.gene85978:CDS |
| AAATTTACAGTTGAAGGATA+TGG | 0.376424 | 8.2:+70159903 | MS.gene85978:intron |
| CACAACGGCCATATAGAGTT+TGG | 0.395021 | 8.2:+70159510 | MS.gene85978:CDS |
| AAACTACGATTGTGATTCTT+CGG | 0.429750 | 8.2:-70160322 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | 8.2:-70160162 | None:intergenic |
| AAACAAACGCAACCTCTTTG+TGG | 0.437485 | 8.2:+70159341 | MS.gene85978:CDS |
| CTTATCTTTGCCAACTTCAC+AGG | 0.446985 | 8.2:-70158383 | None:intergenic |
| TTATATGACTTGAGGCATAC+AGG | 0.464058 | 8.2:+70159781 | MS.gene85978:CDS |
| GAAGAATGGAGTGAATATGT+TGG | 0.482908 | 8.2:+70160132 | MS.gene85978:CDS |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | 8.2:+70159094 | MS.gene85978:CDS |
| TTAATCACTTACATTAGATA+AGG | 0.496352 | 8.2:-70160189 | None:intergenic |
| ACGCAACCTCTTTGTGGATA+GGG | 0.528181 | 8.2:+70159347 | MS.gene85978:CDS |
| GTAGCAGAAAATATTATGGA+TGG | 0.537395 | 8.2:+70158358 | MS.gene85978:CDS |
| ATGGATGGATCCTGTGAAGT+TGG | 0.558937 | 8.2:+70158373 | MS.gene85978:CDS |
| CGTTTAGATTATATGACTTG+AGG | 0.559102 | 8.2:+70159773 | MS.gene85978:CDS |
| TTTGGTTCTATCTGATGATG+TGG | 0.562282 | 8.2:+70159951 | MS.gene85978:CDS |
| AACGCAACCTCTTTGTGGAT+AGG | 0.564160 | 8.2:+70159346 | MS.gene85978:CDS |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | 8.2:+70159079 | MS.gene85978:intron |
| TACATGGTGTCTCAGAAGCA+AGG | 0.611094 | 8.2:-70158468 | None:intergenic |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | 8.2:+70159972 | MS.gene85978:CDS |
| GAAACAGACACGAAAGGTGA+CGG | 0.615254 | 8.2:+70160096 | MS.gene85978:CDS |
| TGCATACCCTATCCACAAAG+AGG | 0.624228 | 8.2:-70159353 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | 8.2:+70159966 | MS.gene85978:CDS |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | 8.2:+70159082 | MS.gene85978:intron |
| TCTGCGCTCAGCATAAAACT+GGG | 0.668163 | 8.2:-70160297 | None:intergenic |
| TTTCTAGAAACAGACACGAA+AGG | 0.669410 | 8.2:+70160090 | MS.gene85978:CDS |
| AGGTTACATTGAGCGCGAAG+AGG | 0.670430 | 8.2:+70159801 | MS.gene85978:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTCTTATATATATATTT+TGG | + | chr8.2:70160051-70160070 | MS.gene85978:intron | 10.0% |
| !!! | GTTTCTTATATATATATTTT+GGG | + | chr8.2:70160052-70160071 | MS.gene85978:intron | 10.0% |
| !!! | TTTCTTATATATATATTTTG+GGG | + | chr8.2:70160053-70160072 | MS.gene85978:intron | 10.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | + | chr8.2:70158685-70158704 | MS.gene85978:intron | 15.0% |
| !! | ACAAAAAAAAAAACATGAAA+AGG | - | chr8.2:70158508-70158527 | None:intergenic | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | + | chr8.2:70158686-70158705 | MS.gene85978:intron | 15.0% |
| !! | CTTATAATCTGTAAAATTAT+AGG | + | chr8.2:70158567-70158586 | MS.gene85978:intron | 15.0% |
| !!! | TTCTTATATATATATTTTGG+GGG | + | chr8.2:70160054-70160073 | MS.gene85978:intron | 15.0% |
| !! | AAAAGTAGCAGAAAATATTA+TGG | + | chr8.2:70158354-70158373 | MS.gene85978:CDS | 20.0% |
| !! | TAATGAAAATTTACAGTTGA+AGG | + | chr8.2:70159897-70159916 | MS.gene85978:intron | 20.0% |
| !! | TTAATCACTTACATTAGATA+AGG | - | chr8.2:70160192-70160211 | None:intergenic | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | + | chr8.2:70158687-70158706 | MS.gene85978:intron | 20.0% |
| !!! | AATATACTACTTTGATTTAG+TGG | + | chr8.2:70158631-70158650 | MS.gene85978:intron | 20.0% |
| !!! | ACTTTTTGATTCTAATTTCA+GGG | + | chr8.2:70160257-70160276 | MS.gene85978:intron | 20.0% |
| !!! | TCTTATATATATATTTTGGG+GGG | + | chr8.2:70160055-70160074 | MS.gene85978:intron | 20.0% |
| !!! | TGACAATTGTTTTAATGTTT+TGG | + | chr8.2:70159871-70159890 | MS.gene85978:intron | 20.0% |
| ! | AAATTTACAGTTGAAGGATA+TGG | + | chr8.2:70159903-70159922 | MS.gene85978:intron | 25.0% |
| ! | ACGTGATTTAGATAATTTCA+TGG | + | chr8.2:70158595-70158614 | MS.gene85978:intron | 25.0% |
| ! | CATAAATTAAAACACACAAG+TGG | - | chr8.2:70159008-70159027 | None:intergenic | 25.0% |
| ! | TAGCTTATGAAAACAGATTA+TGG | + | chr8.2:70158844-70158863 | MS.gene85978:intron | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | + | chr8.2:70159287-70159306 | MS.gene85978:intron | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8.2:70159148-70159167 | MS.gene85978:CDS | 25.0% |
| !! | GAAAAATTGACTTAGAAGAA+TGG | + | chr8.2:70160118-70160137 | MS.gene85978:CDS | 25.0% |
| !! | TCATTTTCTTTTACTTCTGA+AGG | - | chr8.2:70158415-70158434 | None:intergenic | 25.0% |
| !!! | CACTTTTTGATTCTAATTTC+AGG | + | chr8.2:70160256-70160275 | MS.gene85978:intron | 25.0% |
| !!! | CTTATTTTCATAAGTTCTAC+AGG | + | chr8.2:70158820-70158839 | MS.gene85978:intron | 25.0% |
| !!! | TGTTTTTTTTTTTGTTGCCT+TGG | + | chr8.2:70158513-70158532 | MS.gene85978:intron | 25.0% |
| ATAATCACTTCTGCTACAAT+CGG | + | chr8.2:70158938-70158957 | MS.gene85978:intron | 30.0% | |
| ATCCAAAAAGAACCTGAAAT+TGG | + | chr8.2:70158975-70158994 | MS.gene85978:intron | 30.0% | |
| ATTAAAACACACAAGTGGAA+AGG | - | chr8.2:70159003-70159022 | None:intergenic | 30.0% | |
| CGTTTAGATTATATGACTTG+AGG | + | chr8.2:70159773-70159792 | MS.gene85978:CDS | 30.0% | |
| GTACACTATTCATATGCAAT+TGG | - | chr8.2:70159034-70159053 | None:intergenic | 30.0% | |
| GTAGCAGAAAATATTATGGA+TGG | + | chr8.2:70158358-70158377 | MS.gene85978:CDS | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | - | chr8.2:70159521-70159540 | None:intergenic | 30.0% | |
| TCTATCCTATGAAAAGACTA+CGG | - | chr8.2:70159836-70159855 | None:intergenic | 30.0% | |
| TGCACAGTTATTGTGAAAAA+TGG | + | chr8.2:70159134-70159153 | MS.gene85978:CDS | 30.0% | |
| ! | AAATAAGTTTAAAACGCTCG+TGG | - | chr8.2:70158807-70158826 | None:intergenic | 30.0% |
| ! | AGTCTTTTCATAGGATAGAT+TGG | + | chr8.2:70159837-70159856 | MS.gene85978:intron | 30.0% |
| ! | CAAGACAATTTAACTTTCCA+AGG | - | chr8.2:70158533-70158552 | None:intergenic | 30.0% |
| ! | CTGCGAAGAATAATTTTACA+TGG | - | chr8.2:70159750-70159769 | None:intergenic | 30.0% |
| !!! | AACCAATTTCAGGTTCTTTT+TGG | - | chr8.2:70158980-70158999 | None:intergenic | 30.0% |
| !!! | CATTTTATTTTGTCTGCTTG+AGG | - | chr8.2:70159576-70159595 | None:intergenic | 30.0% |
| !!! | GATTTTGGTTGAATCTGATT+TGG | + | chr8.2:70159933-70159952 | MS.gene85978:CDS | 30.0% |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8.2:70158727-70158746 | None:intergenic | 35.0% | |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8.2:70159202-70159221 | MS.gene85978:intron | 35.0% | |
| CATAGTGCATACCATCTTAA+GGG | + | chr8.2:70158713-70158732 | MS.gene85978:intron | 35.0% | |
| CTATCCTATGAAAAGACTAC+GGG | - | chr8.2:70159835-70159854 | None:intergenic | 35.0% | |
| CTGTGTCATAATGCAATGAA+TGG | - | chr8.2:70160224-70160243 | None:intergenic | 35.0% | |
| GAAAAGATCAAACATCTGCA+TGG | - | chr8.2:70159481-70159500 | None:intergenic | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | + | chr8.2:70160132-70160151 | MS.gene85978:CDS | 35.0% | |
| GGAAGCTTTCTTTACTTACA+TGG | - | chr8.2:70158487-70158506 | None:intergenic | 35.0% | |
| GGCGAATTTATCAGATCTTT+AGG | + | chr8.2:70159531-70159550 | MS.gene85978:CDS | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr8.2:70160165-70160184 | None:intergenic | 35.0% | |
| TGATGTGGTTGAAACAATTG+TGG | + | chr8.2:70159966-70159985 | MS.gene85978:CDS | 35.0% | |
| TGTATATACGATCAACATCC+TGG | - | chr8.2:70159650-70159669 | None:intergenic | 35.0% | |
| TTATATGACTTGAGGCATAC+AGG | + | chr8.2:70159781-70159800 | MS.gene85978:CDS | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8.2:70158721-70158740 | MS.gene85978:intron | 35.0% |
| ! | CTTTTCGATGTCAATCACAA+CGG | + | chr8.2:70159495-70159514 | MS.gene85978:CDS | 35.0% |
| ! | TTTCTAGAAACAGACACGAA+AGG | + | chr8.2:70160090-70160109 | MS.gene85978:CDS | 35.0% |
| !! | TTTGGTTCTATCTGATGATG+TGG | + | chr8.2:70159951-70159970 | MS.gene85978:CDS | 35.0% |
| !!! | GGATATGGTGTTGATGATTT+TGG | + | chr8.2:70159918-70159937 | MS.gene85978:CDS | 35.0% |
| AAACAAACGCAACCTCTTTG+TGG | + | chr8.2:70159341-70159360 | MS.gene85978:CDS | 40.0% | |
| AGTCGTTTGTTTACCATTCC+AGG | + | chr8.2:70159629-70159648 | MS.gene85978:intron | 40.0% | |
| AGTGGAAAGGAACCAATTTC+AGG | - | chr8.2:70158990-70159009 | None:intergenic | 40.0% | |
| ATACGATCAACATCCTGGAA+TGG | - | chr8.2:70159645-70159664 | None:intergenic | 40.0% | |
| CTTATCTTTGCCAACTTCAC+AGG | - | chr8.2:70158386-70158405 | None:intergenic | 40.0% | |
| GCATAGTGCATACCATCTTA+AGG | + | chr8.2:70158712-70158731 | MS.gene85978:intron | 40.0% | |
| GGTTGAAACAATTGTGGACA+AGG | + | chr8.2:70159972-70159991 | MS.gene85978:CDS | 40.0% | |
| ! | TACTCCCGTAGTCTTTTCAT+AGG | + | chr8.2:70159828-70159847 | MS.gene85978:intron | 40.0% |
| AACGCAACCTCTTTGTGGAT+AGG | + | chr8.2:70159346-70159365 | MS.gene85978:CDS | 45.0% | |
| ACGCAACCTCTTTGTGGATA+GGG | + | chr8.2:70159347-70159366 | MS.gene85978:CDS | 45.0% | |
| ATGGATGGATCCTGTGAAGT+TGG | + | chr8.2:70158373-70158392 | MS.gene85978:CDS | 45.0% | |
| CACAACGGCCATATAGAGTT+TGG | + | chr8.2:70159510-70159529 | MS.gene85978:CDS | 45.0% | |
| GAAACAGACACGAAAGGTGA+CGG | + | chr8.2:70160096-70160115 | MS.gene85978:CDS | 45.0% | |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8.2:70159094-70159113 | MS.gene85978:CDS | 45.0% | |
| TACATGGTGTCTCAGAAGCA+AGG | - | chr8.2:70158471-70158490 | None:intergenic | 45.0% | |
| TCTGCGCTCAGCATAAAACT+GGG | - | chr8.2:70160300-70160319 | None:intergenic | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | - | chr8.2:70159356-70159375 | None:intergenic | 45.0% | |
| TTCTGCGCTCAGCATAAAAC+TGG | - | chr8.2:70160301-70160320 | None:intergenic | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | - | chr8.2:70159567-70159586 | None:intergenic | 45.0% | |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8.2:70159082-70159101 | MS.gene85978:intron | 50.0% | |
| AGGTTACATTGAGCGCGAAG+AGG | + | chr8.2:70159801-70159820 | MS.gene85978:CDS | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8.2:70159079-70159098 | MS.gene85978:intron | 50.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8.2:70159082-70159101 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 70158331 | 70160341 | 70158331 | ID=MS.gene85978 |
| chr8.2 | mRNA | 70158331 | 70160341 | 70158331 | ID=MS.gene85978.t1;Parent=MS.gene85978 |
| chr8.2 | exon | 70158331 | 70158487 | 70158331 | ID=MS.gene85978.t1.exon1;Parent=MS.gene85978.t1 |
| chr8.2 | CDS | 70158331 | 70158487 | 70158331 | ID=cds.MS.gene85978.t1;Parent=MS.gene85978.t1 |
| chr8.2 | exon | 70159087 | 70159169 | 70159087 | ID=MS.gene85978.t1.exon2;Parent=MS.gene85978.t1 |
| chr8.2 | CDS | 70159087 | 70159169 | 70159087 | ID=cds.MS.gene85978.t1;Parent=MS.gene85978.t1 |
| chr8.2 | exon | 70159309 | 70159368 | 70159309 | ID=MS.gene85978.t1.exon3;Parent=MS.gene85978.t1 |
| chr8.2 | CDS | 70159309 | 70159368 | 70159309 | ID=cds.MS.gene85978.t1;Parent=MS.gene85978.t1 |
| chr8.2 | exon | 70159486 | 70159594 | 70159486 | ID=MS.gene85978.t1.exon4;Parent=MS.gene85978.t1 |
| chr8.2 | CDS | 70159486 | 70159594 | 70159486 | ID=cds.MS.gene85978.t1;Parent=MS.gene85978.t1 |
| chr8.2 | exon | 70159770 | 70159822 | 70159770 | ID=MS.gene85978.t1.exon5;Parent=MS.gene85978.t1 |
| chr8.2 | CDS | 70159770 | 70159822 | 70159770 | ID=cds.MS.gene85978.t1;Parent=MS.gene85978.t1 |
| chr8.2 | exon | 70159913 | 70159993 | 70159913 | ID=MS.gene85978.t1.exon6;Parent=MS.gene85978.t1 |
| chr8.2 | CDS | 70159913 | 70159993 | 70159913 | ID=cds.MS.gene85978.t1;Parent=MS.gene85978.t1 |
| chr8.2 | exon | 70160087 | 70160199 | 70160087 | ID=MS.gene85978.t1.exon7;Parent=MS.gene85978.t1 |
| chr8.2 | CDS | 70160087 | 70160199 | 70160087 | ID=cds.MS.gene85978.t1;Parent=MS.gene85978.t1 |
| chr8.2 | exon | 70160278 | 70160341 | 70160278 | ID=MS.gene85978.t1.exon8;Parent=MS.gene85978.t1 |
| chr8.2 | CDS | 70160278 | 70160341 | 70160278 | ID=cds.MS.gene85978.t1;Parent=MS.gene85978.t1 |
| Gene Sequence |
| Protein sequence |
