Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88816.t1 | XP_013468810.2 | 99.6 | 265 | 1 | 0 | 1 | 265 | 25 | 289 | 2.10E-155 | 558.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88816.t1 | Q949R4 | 63.8 | 265 | 92 | 3 | 3 | 263 | 4 | 268 | 8.9e-102 | 371.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88816.t1 | A0A072VM25 | 99.6 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 1.5e-155 | 558.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene88816 | 0.800042 | 1.73E-48 | -1.69E-46 |
| MS.gene049483 | MS.gene88816 | 0.804028 | 2.63E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene88816 | 0.818984 | 1.47E-52 | -1.69E-46 |
| MS.gene049634 | MS.gene88816 | 0.819435 | 1.16E-52 | -1.69E-46 |
| MS.gene050173 | MS.gene88816 | 0.806584 | 7.66E-50 | -1.69E-46 |
| MS.gene050363 | MS.gene88816 | 0.864032 | 1.63E-64 | -1.69E-46 |
| MS.gene050381 | MS.gene88816 | 0.879325 | 1.37E-69 | -1.69E-46 |
| MS.gene050809 | MS.gene88816 | 0.804114 | 2.52E-49 | -1.69E-46 |
| MS.gene050883 | MS.gene88816 | 0.834778 | 2.46E-56 | -1.69E-46 |
| MS.gene051044 | MS.gene88816 | 0.834618 | 2.70E-56 | -1.69E-46 |
| MS.gene05104 | MS.gene88816 | 0.80174 | 7.81E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene88816 | 0.850536 | 1.59E-60 | -1.69E-46 |
| MS.gene051138 | MS.gene88816 | 0.853756 | 1.94E-61 | -1.69E-46 |
| MS.gene05141 | MS.gene88816 | 0.806752 | 7.06E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene88816 | 0.862884 | 3.69E-64 | -1.69E-46 |
| MS.gene052566 | MS.gene88816 | 0.816229 | 6.16E-52 | -1.69E-46 |
| MS.gene052802 | MS.gene88816 | 0.829111 | 6.18E-55 | -1.69E-46 |
| MS.gene053420 | MS.gene88816 | 0.84257 | 2.39E-58 | -1.69E-46 |
| MS.gene053488 | MS.gene88816 | 0.845352 | 4.28E-59 | -1.69E-46 |
| MS.gene053561 | MS.gene88816 | 0.879238 | 1.47E-69 | -1.69E-46 |
| MS.gene054054 | MS.gene88816 | 0.825983 | 3.48E-54 | -1.69E-46 |
| MS.gene054056 | MS.gene88816 | 0.812381 | 4.36E-51 | -1.69E-46 |
| MS.gene054616 | MS.gene88816 | 0.831267 | 1.84E-55 | -1.69E-46 |
| MS.gene054708 | MS.gene88816 | 0.846305 | 2.36E-59 | -1.69E-46 |
| MS.gene055124 | MS.gene88816 | 0.835904 | 1.28E-56 | -1.69E-46 |
| MS.gene055154 | MS.gene88816 | 0.84792 | 8.52E-60 | -1.69E-46 |
| MS.gene055202 | MS.gene88816 | 0.832894 | 7.29E-56 | -1.69E-46 |
| MS.gene055401 | MS.gene88816 | 0.808364 | 3.21E-50 | -1.69E-46 |
| MS.gene055550 | MS.gene88816 | 0.802591 | 5.22E-49 | -1.69E-46 |
| MS.gene055942 | MS.gene88816 | 0.809109 | 2.23E-50 | -1.69E-46 |
| MS.gene056310 | MS.gene88816 | 0.847998 | 8.11E-60 | -1.69E-46 |
| MS.gene056311 | MS.gene88816 | 0.857119 | 2.03E-62 | -1.69E-46 |
| MS.gene056313 | MS.gene88816 | 0.862745 | 4.08E-64 | -1.69E-46 |
| MS.gene056408 | MS.gene88816 | 0.820169 | 7.91E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene88816 | 0.862682 | 4.26E-64 | -1.69E-46 |
| MS.gene057473 | MS.gene88816 | 0.803038 | 4.22E-49 | -1.69E-46 |
| MS.gene058068 | MS.gene88816 | 0.834492 | 2.90E-56 | -1.69E-46 |
| MS.gene058099 | MS.gene88816 | 0.840632 | 7.74E-58 | -1.69E-46 |
| MS.gene058171 | MS.gene88816 | 0.849379 | 3.36E-60 | -1.69E-46 |
| MS.gene058173 | MS.gene88816 | 0.838584 | 2.64E-57 | -1.69E-46 |
| MS.gene058175 | MS.gene88816 | 0.849304 | 3.52E-60 | -1.69E-46 |
| MS.gene058493 | MS.gene88816 | 0.833266 | 5.88E-56 | -1.69E-46 |
| MS.gene058494 | MS.gene88816 | 0.815082 | 1.11E-51 | -1.69E-46 |
| MS.gene058603 | MS.gene88816 | 0.804546 | 2.05E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene88816 | 0.815457 | 9.15E-52 | -1.69E-46 |
| MS.gene058629 | MS.gene88816 | 0.806788 | 6.94E-50 | -1.69E-46 |
| MS.gene058630 | MS.gene88816 | 0.812574 | 3.96E-51 | -1.69E-46 |
| MS.gene058840 | MS.gene88816 | 0.836111 | 1.13E-56 | -1.69E-46 |
| MS.gene05884 | MS.gene88816 | 0.810501 | 1.12E-50 | -1.69E-46 |
| MS.gene058978 | MS.gene88816 | 0.818823 | 1.60E-52 | -1.69E-46 |
| MS.gene059223 | MS.gene88816 | 0.822395 | 2.42E-53 | -1.69E-46 |
| MS.gene059690 | MS.gene88816 | 0.889687 | 1.94E-73 | -1.69E-46 |
| MS.gene059691 | MS.gene88816 | 0.863792 | 1.93E-64 | -1.69E-46 |
| MS.gene059694 | MS.gene88816 | 0.89547 | 9.29E-76 | -1.69E-46 |
| MS.gene059697 | MS.gene88816 | 0.889577 | 2.14E-73 | -1.69E-46 |
| MS.gene059916 | MS.gene88816 | 0.832429 | 9.50E-56 | -1.69E-46 |
| MS.gene059943 | MS.gene88816 | 0.815925 | 7.20E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene88816 | 0.806475 | 8.08E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene88816 | 0.803862 | 2.85E-49 | -1.69E-46 |
| MS.gene060808 | MS.gene88816 | 0.810167 | 1.32E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88816.t1 | MTR_1g077030 | 99.623 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 0.0 | 543 |
| MS.gene88816.t1 | MTR_6g064960 | 73.783 | 267 | 67 | 3 | 1 | 265 | 1 | 266 | 2.36e-146 | 410 |
| MS.gene88816.t1 | MTR_6g036660 | 64.921 | 191 | 36 | 2 | 76 | 265 | 9 | 169 | 1.30e-80 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88816.t1 | AT4G15093 | 64.314 | 255 | 87 | 3 | 3 | 253 | 4 | 258 | 2.83e-123 | 352 |
Find 81 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTCTGGCATTTGATTCC+TGG | 0.223358 | 1.2:+63518271 | MS.gene88816:CDS |
| TTCTTGTTATCTCTGGTCAT+TGG | 0.280377 | 1.2:+63517282 | MS.gene88816:CDS |
| TGCAGGAATTGTTTCATCTA+TGG | 0.287643 | 1.2:-63517207 | None:intergenic |
| CTTCCCATTGCATGTGGCTA+TGG | 0.326906 | 1.2:+63518612 | MS.gene88816:CDS |
| CCCTCCTCCTCCCTGGGCTC+TGG | 0.327725 | 1.2:+63518257 | MS.gene88816:CDS |
| TCTTGTTATCTCTGGTCATT+GGG | 0.336206 | 1.2:+63517283 | MS.gene88816:CDS |
| TTCACCCTCTTTGCTAACTT+TGG | 0.341100 | 1.2:-63517973 | None:intergenic |
| AACTTTGGAGCCCCTGGTGC+TGG | 0.357532 | 1.2:-63517958 | None:intergenic |
| ATTGTGATTAACAACGTTAA+CGG | 0.372671 | 1.2:-63517321 | None:intergenic |
| CATGTTATGAGTGGCACTTC+CGG | 0.373240 | 1.2:-63518211 | None:intergenic |
| GAGAAAGCCCTCCTCCTCCC+TGG | 0.379390 | 1.2:+63518250 | MS.gene88816:CDS |
| GATGAGGGTGTTCTAATAAT+CGG | 0.388648 | 1.2:+63518186 | MS.gene88816:CDS |
| TTTGCTAACTTTGGAGCCCC+TGG | 0.388909 | 1.2:-63517964 | None:intergenic |
| AAGGAACTGATCGAAGCATC+TGG | 0.408387 | 1.2:+63517994 | MS.gene88816:CDS |
| GCCAGAGCCCAGGGAGGAGG+AGG | 0.408526 | 1.2:-63518258 | None:intergenic |
| AATGAAACCATCCATGATTT+CGG | 0.409867 | 1.2:+63517341 | MS.gene88816:CDS |
| TCTGCCATTCTTGTTATCTC+TGG | 0.410290 | 1.2:+63517275 | MS.gene88816:CDS |
| TATACCAGTATGTCAACTTT+CGG | 0.414509 | 1.2:+63518101 | MS.gene88816:CDS |
| TCGGTTTCATCAAATAGAAA+TGG | 0.415828 | 1.2:+63518120 | MS.gene88816:CDS |
| AGAACACCCTCATCTTTAAG+AGG | 0.426483 | 1.2:-63518177 | None:intergenic |
| TTCCCATTGCATGTGGCTAT+GGG | 0.428707 | 1.2:+63518613 | MS.gene88816:CDS |
| GGTACTTACCATTATAACTT+AGG | 0.430513 | 1.2:+63518141 | MS.gene88816:CDS |
| GGATGAGCCACTTTCGCATA+TGG | 0.439113 | 1.2:-63518574 | None:intergenic |
| CATGGAAATTCTTGACATCA+TGG | 0.450298 | 1.2:+63517228 | MS.gene88816:CDS |
| CAAGGTTATTCATGAGAGTT+GGG | 0.452153 | 1.2:+63518660 | MS.gene88816:CDS |
| ACTCATAACATGAGAGCAAT+TGG | 0.455156 | 1.2:+63518222 | MS.gene88816:CDS |
| CCAAGGTTATTCATGAGAGT+TGG | 0.456924 | 1.2:+63518659 | MS.gene88816:CDS |
| ATTCATGAGAGTTGGGATAG+TGG | 0.458572 | 1.2:+63518667 | MS.gene88816:CDS |
| TAGGAAAACCACCGAAATCA+TGG | 0.461930 | 1.2:-63517352 | None:intergenic |
| TGATTAACAACGTTAACGGT+TGG | 0.472085 | 1.2:-63517317 | None:intergenic |
| GAAACCGAAAGTTGACATAC+TGG | 0.474557 | 1.2:-63518105 | None:intergenic |
| TGCAATGGGAAGAAATGATC+AGG | 0.474579 | 1.2:-63518601 | None:intergenic |
| AGAAAGCCCTCCTCCTCCCT+GGG | 0.482352 | 1.2:+63518251 | MS.gene88816:CDS |
| CAGCTCAAGTATCCAGCACC+AGG | 0.488701 | 1.2:+63517946 | MS.gene88816:intron |
| GGAATCAAATGCCAGAGCCC+AGG | 0.488956 | 1.2:-63518268 | None:intergenic |
| CAAACCTTGTACATGCTCCT+AGG | 0.492861 | 1.2:-63517371 | None:intergenic |
| CTCCCATAGCCACATGCAAT+GGG | 0.493902 | 1.2:-63518615 | None:intergenic |
| AATGCCAGAGCCCAGGGAGG+AGG | 0.498803 | 1.2:-63518261 | None:intergenic |
| AGAATGGCAGATGGTCTCTC+AGG | 0.511823 | 1.2:-63517263 | None:intergenic |
| GCTCCCATAGCCACATGCAA+TGG | 0.521180 | 1.2:-63518616 | None:intergenic |
| CATGTGGCTATGGGAGCTGC+TGG | 0.535183 | 1.2:+63518622 | MS.gene88816:CDS |
| CATACTGGTATATCAGCCTC+TGG | 0.544796 | 1.2:-63518090 | None:intergenic |
| GGCTCCAAAGTTAGCAAAGA+GGG | 0.544809 | 1.2:+63517969 | MS.gene88816:CDS |
| GGTGTTCTAATAATCGGATC+CGG | 0.552606 | 1.2:+63518192 | MS.gene88816:CDS |
| CCAACTCTCATGAATAACCT+TGG | 0.556818 | 1.2:-63518659 | None:intergenic |
| AAGAATCTCTCGTCGAAGGA+AGG | 0.559361 | 1.2:+63518298 | MS.gene88816:CDS |
| TCATTTCTTCCCATTGCATG+TGG | 0.560813 | 1.2:+63518606 | MS.gene88816:CDS |
| ATTCTTGACATCATGGAAAG+AGG | 0.565403 | 1.2:+63517235 | MS.gene88816:CDS |
| GAAGGCGCCATATGCGAAAG+TGG | 0.568307 | 1.2:+63518567 | MS.gene88816:CDS |
| ATGACCAGAGATAACAAGAA+TGG | 0.569073 | 1.2:-63517279 | None:intergenic |
| GTTTCATCTATGGCTAGTGT+TGG | 0.573056 | 1.2:-63517197 | None:intergenic |
| ATGCGAAAGTGGCTCATCCA+TGG | 0.576625 | 1.2:+63518578 | MS.gene88816:CDS |
| GGAGGAGGAGGGCTTTCTCG+AGG | 0.577926 | 1.2:-63518246 | None:intergenic |
| AGCATCTGGGTTGAGTCGAG+TGG | 0.579096 | 1.2:+63518008 | MS.gene88816:CDS |
| AATAGCTCCTCTTAAAGATG+AGG | 0.581989 | 1.2:+63518170 | MS.gene88816:CDS |
| GATGTCAAGAATTTCCATGC+AGG | 0.582906 | 1.2:-63517224 | None:intergenic |
| AGCTGCTGTGAAACCAAAAG+AGG | 0.584042 | 1.2:-63518704 | None:intergenic |
| GAATCAAATGCCAGAGCCCA+GGG | 0.587952 | 1.2:-63518267 | None:intergenic |
| TGGTGAGAATTCAAAGGCCA+AGG | 0.591154 | 1.2:+63518642 | MS.gene88816:CDS |
| GGGAAGAAATGATCAGGCCA+TGG | 0.597088 | 1.2:-63518595 | None:intergenic |
| GAAACCATCCATGATTTCGG+TGG | 0.597978 | 1.2:+63517344 | MS.gene88816:CDS |
| CATAAATCACTACGAAGAGA+AGG | 0.601560 | 1.2:+63518549 | MS.gene88816:CDS |
| CCAGAGCCCAGGGAGGAGGA+GGG | 0.604544 | 1.2:-63518257 | None:intergenic |
| AGGAACTGATCGAAGCATCT+GGG | 0.606798 | 1.2:+63517995 | MS.gene88816:CDS |
| AAAGTTAGCAAAGAGGGTGA+AGG | 0.608328 | 1.2:+63517975 | MS.gene88816:CDS |
| TTAAAAGAATCTCTCGTCGA+AGG | 0.612211 | 1.2:+63518294 | MS.gene88816:CDS |
| ATAGCTCCTCTTAAAGATGA+GGG | 0.624747 | 1.2:+63518171 | MS.gene88816:CDS |
| TAGATGAAACAATTCCTGCA+TGG | 0.625784 | 1.2:+63517210 | MS.gene88816:CDS |
| AGCTGCTGGTGAGAATTCAA+AGG | 0.626345 | 1.2:+63518636 | MS.gene88816:CDS |
| TGCTCAATGTTCCAGATACG+AGG | 0.635008 | 1.2:+63518525 | MS.gene88816:intron |
| GTGGGCTTGATCATGGAACA+TGG | 0.640571 | 1.2:+63518046 | MS.gene88816:CDS |
| AAAACCACCGAAATCATGGA+TGG | 0.648531 | 1.2:-63517348 | None:intergenic |
| GCTCAAGTATCCAGCACCAG+GGG | 0.654006 | 1.2:+63517948 | MS.gene88816:intron |
| AGCTCAAGTATCCAGCACCA+GGG | 0.658115 | 1.2:+63517947 | MS.gene88816:intron |
| GAGATAACAAGAATGGCAGA+TGG | 0.658261 | 1.2:-63517272 | None:intergenic |
| AATTGCTCTCATGTTATGAG+TGG | 0.665609 | 1.2:-63518220 | None:intergenic |
| TCTCATGTTGATGTATCCAG+AGG | 0.674561 | 1.2:+63518074 | MS.gene88816:CDS |
| TCTGGATACATCAACATGAG+AGG | 0.675165 | 1.2:-63518072 | None:intergenic |
| GGGCTCCAAAGTTAGCAAAG+AGG | 0.677936 | 1.2:+63517968 | MS.gene88816:CDS |
| TGGGCTTGATCATGGAACAT+GGG | 0.724784 | 1.2:+63518047 | MS.gene88816:CDS |
| TCAAATGCCAGAGCCCAGGG+AGG | 0.758664 | 1.2:-63518264 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAGATATAAAACAAAAA+TGG | - | chr1.2:63517903-63517922 | None:intergenic | 15.0% |
| !! | CAAGATTTATTCCATTAAAT+GGG | - | chr1.2:63517542-63517561 | None:intergenic | 20.0% |
| ! | AAGAAATTGTAGCAATAGAT+TGG | + | chr1.2:63517609-63517628 | MS.gene88816:intron | 25.0% |
| ! | ATATGCATACATTACACATT+AGG | + | chr1.2:63517664-63517683 | MS.gene88816:intron | 25.0% |
| ! | ATTACATCTTGAAATTTGAG+CGG | + | chr1.2:63517468-63517487 | MS.gene88816:intron | 25.0% |
| ! | ATTGTGATTAACAACGTTAA+CGG | - | chr1.2:63517324-63517343 | None:intergenic | 25.0% |
| ! | CCAAGATTTATTCCATTAAA+TGG | - | chr1.2:63517543-63517562 | None:intergenic | 25.0% |
| ! | CCATTTAATGGAATAAATCT+TGG | + | chr1.2:63517540-63517559 | MS.gene88816:intron | 25.0% |
| ! | GGAATCTGAATTAAACAATT+AGG | - | chr1.2:63517747-63517766 | None:intergenic | 25.0% |
| ! | TTTATTCCATTAAATGGGAT+CGG | - | chr1.2:63517537-63517556 | None:intergenic | 25.0% |
| !!! | TTGCTTTTCCTAAGTTATAA+TGG | - | chr1.2:63518152-63518171 | None:intergenic | 25.0% |
| AAAACAAAAATGGACCATTG+TGG | - | chr1.2:63517893-63517912 | None:intergenic | 30.0% | |
| AATGAAACCATCCATGATTT+CGG | + | chr1.2:63517341-63517360 | MS.gene88816:CDS | 30.0% | |
| CTATTGAATCATAACTGATC+CGG | + | chr1.2:63517707-63517726 | MS.gene88816:intron | 30.0% | |
| GATTGGATAAACAAACATTG+AGG | + | chr1.2:63517626-63517645 | MS.gene88816:intron | 30.0% | |
| GGTACTTACCATTATAACTT+AGG | + | chr1.2:63518141-63518160 | MS.gene88816:CDS | 30.0% | |
| TAGCTCTTCAATTGATACTT+AGG | - | chr1.2:63517840-63517859 | None:intergenic | 30.0% | |
| TATACCAGTATGTCAACTTT+CGG | + | chr1.2:63518101-63518120 | MS.gene88816:CDS | 30.0% | |
| TATTGAATCATAACTGATCC+GGG | + | chr1.2:63517708-63517727 | MS.gene88816:intron | 30.0% | |
| TCGGTTTCATCAAATAGAAA+TGG | + | chr1.2:63518120-63518139 | MS.gene88816:CDS | 30.0% | |
| TTAATTCAGATTCCGAACTT+TGG | + | chr1.2:63517753-63517772 | MS.gene88816:intron | 30.0% | |
| TTTCGATTCTCAAACAGATT+TGG | - | chr1.2:63517585-63517604 | None:intergenic | 30.0% | |
| ! | GAAACGTTTTACATATCACA+TGG | + | chr1.2:63517170-63517189 | MS.gene88816:CDS | 30.0% |
| !! | ATAGTTGCTATTTGACAACA+TGG | - | chr1.2:63518367-63518386 | None:intergenic | 30.0% |
| !!! | TTTCGGTATCGATTTGTTTT+TGG | + | chr1.2:63517800-63517819 | MS.gene88816:intron | 30.0% |
| AAATAGCAACTATAGCGTAG+TGG | + | chr1.2:63518374-63518393 | MS.gene88816:intron | 35.0% | |
| AATAGCTCCTCTTAAAGATG+AGG | + | chr1.2:63518170-63518189 | MS.gene88816:CDS | 35.0% | |
| AATTGCTCTCATGTTATGAG+TGG | - | chr1.2:63518223-63518242 | None:intergenic | 35.0% | |
| ACTCATAACATGAGAGCAAT+TGG | + | chr1.2:63518222-63518241 | MS.gene88816:CDS | 35.0% | |
| ATAGCTCCTCTTAAAGATGA+GGG | + | chr1.2:63518171-63518190 | MS.gene88816:CDS | 35.0% | |
| ATGACCAGAGATAACAAGAA+TGG | - | chr1.2:63517282-63517301 | None:intergenic | 35.0% | |
| ATTCTTGACATCATGGAAAG+AGG | + | chr1.2:63517235-63517254 | MS.gene88816:CDS | 35.0% | |
| CAAGGTTATTCATGAGAGTT+GGG | + | chr1.2:63518660-63518679 | MS.gene88816:CDS | 35.0% | |
| CATAAATCACTACGAAGAGA+AGG | + | chr1.2:63518549-63518568 | MS.gene88816:CDS | 35.0% | |
| CATGGAAATTCTTGACATCA+TGG | + | chr1.2:63517228-63517247 | MS.gene88816:CDS | 35.0% | |
| GAAACTAGAGTCCAATCATT+CGG | - | chr1.2:63517784-63517803 | None:intergenic | 35.0% | |
| GATACTTGAGCTGCAAATAA+AGG | - | chr1.2:63517939-63517958 | None:intergenic | 35.0% | |
| GCATACATTACACATTAGGT+TGG | + | chr1.2:63517668-63517687 | MS.gene88816:intron | 35.0% | |
| TAGATGAAACAATTCCTGCA+TGG | + | chr1.2:63517210-63517229 | MS.gene88816:CDS | 35.0% | |
| TGATTAACAACGTTAACGGT+TGG | - | chr1.2:63517320-63517339 | None:intergenic | 35.0% | |
| TGCAGGAATTGTTTCATCTA+TGG | - | chr1.2:63517210-63517229 | None:intergenic | 35.0% | |
| TGGACGAAGATAAAAAACGT+GGG | + | chr1.2:63518028-63518047 | MS.gene88816:CDS | 35.0% | |
| TTAAAAGAATCTCTCGTCGA+AGG | + | chr1.2:63518294-63518313 | MS.gene88816:CDS | 35.0% | |
| TTGTTCTGTGATACGTGATT+TGG | + | chr1.2:63518415-63518434 | MS.gene88816:intron | 35.0% | |
| ! | GAATGATTGGACTCTAGTTT+CGG | + | chr1.2:63517783-63517802 | MS.gene88816:intron | 35.0% |
| ! | TCTTGTTATCTCTGGTCATT+GGG | + | chr1.2:63517283-63517302 | MS.gene88816:CDS | 35.0% |
| ! | TTCTTGTTATCTCTGGTCAT+TGG | + | chr1.2:63517282-63517301 | MS.gene88816:CDS | 35.0% |
| !! | GATGAGGGTGTTCTAATAAT+CGG | + | chr1.2:63518186-63518205 | MS.gene88816:CDS | 35.0% |
| !! | GCTTTTTCTTATGCCTCTTT+TGG | + | chr1.2:63518691-63518710 | MS.gene88816:CDS | 35.0% |
| AAAAAACGTGGGCTTGATCA+TGG | + | chr1.2:63518039-63518058 | MS.gene88816:CDS | 40.0% | |
| AAAACCACCGAAATCATGGA+TGG | - | chr1.2:63517351-63517370 | None:intergenic | 40.0% | |
| AAAGTTAGCAAAGAGGGTGA+AGG | + | chr1.2:63517975-63517994 | MS.gene88816:CDS | 40.0% | |
| AATAAATCTTGGTTGTGCGC+TGG | + | chr1.2:63517551-63517570 | MS.gene88816:intron | 40.0% | |
| AGAACACCCTCATCTTTAAG+AGG | - | chr1.2:63518180-63518199 | None:intergenic | 40.0% | |
| ATTCATGAGAGTTGGGATAG+TGG | + | chr1.2:63518667-63518686 | MS.gene88816:CDS | 40.0% | |
| CCAACTCTCATGAATAACCT+TGG | - | chr1.2:63518662-63518681 | None:intergenic | 40.0% | |
| CCAAGGTTATTCATGAGAGT+TGG | + | chr1.2:63518659-63518678 | MS.gene88816:CDS | 40.0% | |
| GAAACCGAAAGTTGACATAC+TGG | - | chr1.2:63518108-63518127 | None:intergenic | 40.0% | |
| GAGATAACAAGAATGGCAGA+TGG | - | chr1.2:63517275-63517294 | None:intergenic | 40.0% | |
| GATGTCAAGAATTTCCATGC+AGG | - | chr1.2:63517227-63517246 | None:intergenic | 40.0% | |
| GGTGTTCTAATAATCGGATC+CGG | + | chr1.2:63518192-63518211 | MS.gene88816:CDS | 40.0% | |
| GTGATTTATGTCCTCGTATC+TGG | - | chr1.2:63518539-63518558 | None:intergenic | 40.0% | |
| GTGGACGAAGATAAAAAACG+TGG | + | chr1.2:63518027-63518046 | MS.gene88816:CDS | 40.0% | |
| GTTTCATCTATGGCTAGTGT+TGG | - | chr1.2:63517200-63517219 | None:intergenic | 40.0% | |
| TAGGAAAACCACCGAAATCA+TGG | - | chr1.2:63517355-63517374 | None:intergenic | 40.0% | |
| TCATTTCTTCCCATTGCATG+TGG | + | chr1.2:63518606-63518625 | MS.gene88816:CDS | 40.0% | |
| TCTCATGTTGATGTATCCAG+AGG | + | chr1.2:63518074-63518093 | MS.gene88816:CDS | 40.0% | |
| TCTGGATACATCAACATGAG+AGG | - | chr1.2:63518075-63518094 | None:intergenic | 40.0% | |
| TGAGCTGCAAATAAAGGAAC+AGG | - | chr1.2:63517933-63517952 | None:intergenic | 40.0% | |
| TGCAATGGGAAGAAATGATC+AGG | - | chr1.2:63518604-63518623 | None:intergenic | 40.0% | |
| TTCACCCTCTTTGCTAACTT+TGG | - | chr1.2:63517976-63517995 | None:intergenic | 40.0% | |
| ! | ATGATTTCGGTGGTTTTCCT+AGG | + | chr1.2:63517354-63517373 | MS.gene88816:CDS | 40.0% |
| ! | GACGAGAGATTCTTTTAACC+AGG | - | chr1.2:63518292-63518311 | None:intergenic | 40.0% |
| ! | GTTTTCCAATCTCTCCACAA+TGG | + | chr1.2:63517876-63517895 | MS.gene88816:intron | 40.0% |
| ! | TCTGCCATTCTTGTTATCTC+TGG | + | chr1.2:63517275-63517294 | MS.gene88816:CDS | 40.0% |
| !! | TTTTCCTAGGAGCATGTACA+AGG | + | chr1.2:63517367-63517386 | MS.gene88816:CDS | 40.0% |
| AAGAATCTCTCGTCGAAGGA+AGG | + | chr1.2:63518298-63518317 | MS.gene88816:CDS | 45.0% | |
| ACTAGAGTCCAATCATTCGG+TGG | - | chr1.2:63517781-63517800 | None:intergenic | 45.0% | |
| AGCTGCTGGTGAGAATTCAA+AGG | + | chr1.2:63518636-63518655 | MS.gene88816:CDS | 45.0% | |
| AGCTGCTGTGAAACCAAAAG+AGG | - | chr1.2:63518707-63518726 | None:intergenic | 45.0% | |
| ATGGACCATTGTGGAGAGAT+TGG | - | chr1.2:63517884-63517903 | None:intergenic | 45.0% | |
| CAAACCTTGTACATGCTCCT+AGG | - | chr1.2:63517374-63517393 | None:intergenic | 45.0% | |
| CATACTGGTATATCAGCCTC+TGG | - | chr1.2:63518093-63518112 | None:intergenic | 45.0% | |
| CATGTTATGAGTGGCACTTC+CGG | - | chr1.2:63518214-63518233 | None:intergenic | 45.0% | |
| GAAACCATCCATGATTTCGG+TGG | + | chr1.2:63517344-63517363 | MS.gene88816:CDS | 45.0% | |
| GGCTCCAAAGTTAGCAAAGA+GGG | + | chr1.2:63517969-63517988 | MS.gene88816:CDS | 45.0% | |
| GTGTAGCCGATCCCATTTAA+TGG | + | chr1.2:63517528-63517547 | MS.gene88816:intron | 45.0% | |
| TGCTCAATGTTCCAGATACG+AGG | + | chr1.2:63518525-63518544 | MS.gene88816:intron | 45.0% | |
| TGGGCTTGATCATGGAACAT+GGG | + | chr1.2:63518047-63518066 | MS.gene88816:CDS | 45.0% | |
| TGGTGAGAATTCAAAGGCCA+AGG | + | chr1.2:63518642-63518661 | MS.gene88816:CDS | 45.0% | |
| TGTTGTCAAACTGCAGCTAG+TGG | + | chr1.2:63518445-63518464 | MS.gene88816:intron | 45.0% | |
| TTAGGCCATCTTTGCTTACC+CGG | - | chr1.2:63517729-63517748 | None:intergenic | 45.0% | |
| TTCCCATTGCATGTGGCTAT+GGG | + | chr1.2:63518613-63518632 | MS.gene88816:CDS | 45.0% | |
| ! | AAGGAACTGATCGAAGCATC+TGG | + | chr1.2:63517994-63518013 | MS.gene88816:CDS | 45.0% |
| ! | AGGAACTGATCGAAGCATCT+GGG | + | chr1.2:63517995-63518014 | MS.gene88816:CDS | 45.0% |
| ! | CATTCGGTGGAACCAAAGTT+CGG | - | chr1.2:63517768-63517787 | None:intergenic | 45.0% |
| ! | CTTTGGTTCCACCGAATGAT+TGG | + | chr1.2:63517770-63517789 | MS.gene88816:intron | 45.0% |
| AGAATGGCAGATGGTCTCTC+AGG | - | chr1.2:63517266-63517285 | None:intergenic | 50.0% | |
| AGCTCAAGTATCCAGCACCA+GGG | + | chr1.2:63517947-63517966 | MS.gene88816:intron | 50.0% | |
| ATGCGAAAGTGGCTCATCCA+TGG | + | chr1.2:63518578-63518597 | MS.gene88816:CDS | 50.0% | |
| CTCCCATAGCCACATGCAAT+GGG | - | chr1.2:63518618-63518637 | None:intergenic | 50.0% | |
| CTGATCCGGGTAAGCAAAGA+TGG | + | chr1.2:63517721-63517740 | MS.gene88816:intron | 50.0% | |
| CTTCCCATTGCATGTGGCTA+TGG | + | chr1.2:63518612-63518631 | MS.gene88816:CDS | 50.0% | |
| GAATCAAATGCCAGAGCCCA+GGG | - | chr1.2:63518270-63518289 | None:intergenic | 50.0% | |
| GGGAAGAAATGATCAGGCCA+TGG | - | chr1.2:63518598-63518617 | None:intergenic | 50.0% | |
| GGGCTCCAAAGTTAGCAAAG+AGG | + | chr1.2:63517968-63517987 | MS.gene88816:CDS | 50.0% | |
| GTGGGCTTGATCATGGAACA+TGG | + | chr1.2:63518046-63518065 | MS.gene88816:CDS | 50.0% | |
| ! | GGATGAGCCACTTTCGCATA+TGG | - | chr1.2:63518577-63518596 | None:intergenic | 50.0% |
| !! | TTTGCTAACTTTGGAGCCCC+TGG | - | chr1.2:63517967-63517986 | None:intergenic | 50.0% |
| CAGCTCAAGTATCCAGCACC+AGG | + | chr1.2:63517946-63517965 | MS.gene88816:intron | 55.0% | |
| GCTCAAGTATCCAGCACCAG+GGG | + | chr1.2:63517948-63517967 | MS.gene88816:intron | 55.0% | |
| GCTCCCATAGCCACATGCAA+TGG | - | chr1.2:63518619-63518638 | None:intergenic | 55.0% | |
| GGAATCAAATGCCAGAGCCC+AGG | - | chr1.2:63518271-63518290 | None:intergenic | 55.0% | |
| ! | AGCATCTGGGTTGAGTCGAG+TGG | + | chr1.2:63518008-63518027 | MS.gene88816:CDS | 55.0% |
| ! | GGGCTCTGGCATTTGATTCC+TGG | + | chr1.2:63518271-63518290 | MS.gene88816:CDS | 55.0% |
| !! | GAAGGCGCCATATGCGAAAG+TGG | + | chr1.2:63518567-63518586 | MS.gene88816:CDS | 55.0% |
| AGAAAGCCCTCCTCCTCCCT+GGG | + | chr1.2:63518251-63518270 | MS.gene88816:CDS | 60.0% | |
| CATGTGGCTATGGGAGCTGC+TGG | + | chr1.2:63518622-63518641 | MS.gene88816:CDS | 60.0% | |
| TCAAATGCCAGAGCCCAGGG+AGG | - | chr1.2:63518267-63518286 | None:intergenic | 60.0% | |
| !! | AACTTTGGAGCCCCTGGTGC+TGG | - | chr1.2:63517961-63517980 | None:intergenic | 60.0% |
| AATGCCAGAGCCCAGGGAGG+AGG | - | chr1.2:63518264-63518283 | None:intergenic | 65.0% | |
| GAGAAAGCCCTCCTCCTCCC+TGG | + | chr1.2:63518250-63518269 | MS.gene88816:CDS | 65.0% | |
| GGAGGAGGAGGGCTTTCTCG+AGG | - | chr1.2:63518249-63518268 | None:intergenic | 65.0% | |
| CCAGAGCCCAGGGAGGAGGA+GGG | - | chr1.2:63518260-63518279 | None:intergenic | 70.0% | |
| CCCTCCTCCTCCCTGGGCTC+TGG | + | chr1.2:63518257-63518276 | MS.gene88816:CDS | 75.0% | |
| GCCAGAGCCCAGGGAGGAGG+AGG | - | chr1.2:63518261-63518280 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 63517158 | 63518735 | 63517158 | ID=MS.gene88816 |
| chr1.2 | mRNA | 63517158 | 63518735 | 63517158 | ID=MS.gene88816.t1;Parent=MS.gene88816 |
| chr1.2 | exon | 63517158 | 63517388 | 63517158 | ID=MS.gene88816.t1.exon1;Parent=MS.gene88816.t1 |
| chr1.2 | CDS | 63517158 | 63517388 | 63517158 | ID=cds.MS.gene88816.t1;Parent=MS.gene88816.t1 |
| chr1.2 | exon | 63517949 | 63518319 | 63517949 | ID=MS.gene88816.t1.exon2;Parent=MS.gene88816.t1 |
| chr1.2 | CDS | 63517949 | 63518319 | 63517949 | ID=cds.MS.gene88816.t1;Parent=MS.gene88816.t1 |
| chr1.2 | exon | 63518540 | 63518735 | 63518540 | ID=MS.gene88816.t1.exon3;Parent=MS.gene88816.t1 |
| chr1.2 | CDS | 63518540 | 63518735 | 63518540 | ID=cds.MS.gene88816.t1;Parent=MS.gene88816.t1 |
| Gene Sequence |
| Protein sequence |
