AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91302


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91302.t1 MTR_1g106550 96.774 372 12 0 1 372 1 372 0.0 755
MS.gene91302.t1 MTR_7g112640 42.791 215 114 3 125 337 86 293 2.41e-41 148
MS.gene91302.t1 MTR_4g099360 41.414 198 113 3 144 341 94 288 3.80e-40 144
MS.gene91302.t1 MTR_5g026840 33.690 187 114 2 150 336 83 259 7.49e-28 111
MS.gene91302.t1 MTR_7g082980 31.915 188 118 2 149 336 73 250 6.76e-26 105
MS.gene91302.t1 MTR_4g075100 29.670 182 118 2 155 336 45 216 4.06e-22 94.4
MS.gene91302.t1 MTR_4g102000 31.319 182 115 2 155 336 130 301 2.47e-20 90.9
MS.gene91302.t1 MTR_7g109610 31.844 179 112 2 158 336 111 279 5.41e-20 89.7
MS.gene91302.t1 MTR_1g086940 31.285 179 113 2 158 336 114 282 1.76e-18 85.5
MS.gene91302.t1 MTR_4g069800 28.415 183 119 4 155 336 99 270 3.26e-17 81.3
MS.gene91302.t1 MTR_4g034690 22.099 181 132 1 155 335 22 193 4.19e-15 73.6
MS.gene91302.t1 MTR_4g069800 27.429 175 115 4 163 336 75 238 4.44e-15 74.7
MS.gene91302.t1 MTR_0002s0730 24.309 181 128 1 155 335 22 193 6.13e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91302.t1 AT1G49970 64.171 374 122 6 8 373 17 386 8.80e-168 474
MS.gene91302.t1 AT1G09130 45.833 192 101 2 148 337 114 304 6.16e-55 184
MS.gene91302.t1 AT1G09130 45.833 192 101 2 148 337 114 304 6.16e-55 184
MS.gene91302.t1 AT1G09130 45.833 192 101 2 148 337 114 304 2.01e-54 184
MS.gene91302.t1 AT4G17040 42.328 189 107 2 153 341 103 289 1.34e-49 169
MS.gene91302.t1 AT5G45390 34.112 214 118 4 150 353 74 274 2.78e-30 117
MS.gene91302.t1 AT5G23140 30.220 182 117 2 155 336 48 219 1.46e-23 98.2
MS.gene91302.t1 AT1G12410 31.868 182 114 2 155 336 89 260 2.48e-22 95.9
MS.gene91302.t1 AT1G66670 30.220 182 117 2 155 336 85 256 4.05e-22 95.9
MS.gene91302.t1 AT1G02560 32.402 179 111 2 158 336 117 285 7.14e-20 89.4
MS.gene91302.t1 AT1G11750 28.108 185 123 2 152 336 93 267 9.10e-19 85.5
MS.gene91302.t1 AT1G11750 28.108 185 123 2 152 336 111 285 2.44e-18 84.7
MS.gene91302.t1 ATCG00670 21.875 192 141 1 144 335 11 193 1.51e-11 63.5

Find 104 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTGATCTGTGGACTTTC+GGG 0.154950 1.3:+73036500 None:intergenic
TTCATCTGCCAAAAGTTATT+TGG 0.171304 1.3:-73037940 MS.gene91302:CDS
CCACTTGATCTGTGGACTTT+CGG 0.248148 1.3:+73036499 None:intergenic
CTTCTTTGCTCTTGGATTCT+CGG 0.258979 1.3:-73037791 MS.gene91302:CDS
AACCCTCAAGCGGCTCCTTC+AGG 0.297867 1.3:-73036029 MS.gene91302:CDS
TGATGTCTACACTGTGAATT+TGG 0.305379 1.3:-73037192 MS.gene91302:CDS
TATTTATATATTAATTCGTC+TGG 0.315416 1.3:-73037547 MS.gene91302:CDS
GGATTTGCCTTCTTTGCTCT+TGG 0.316410 1.3:-73037799 MS.gene91302:CDS
TGTTGCAGATATGTGGATTA+AGG 0.318648 1.3:-73036473 MS.gene91302:intron
AGCGGCTCCTTCAGGACTTT+AGG 0.348211 1.3:-73036021 None:intergenic
GTGAATTTGGCCATGGCGTT+TGG 0.365449 1.3:-73037179 MS.gene91302:CDS
GAGCTGTTGGCAAAAGGAAC+AGG 0.366364 1.3:-73036313 MS.gene91302:CDS
ACTATGAGCCAAATAACTTT+TGG 0.372169 1.3:+73037932 None:intergenic
TATAAATAAACAGGTTTGGC+AGG 0.373031 1.3:+73037562 None:intergenic
AAATCCGGTGGAGCATTTCT+AGG 0.377469 1.3:+73037816 None:intergenic
TACAGAGGAGGTAGGGGAAC+AGG 0.379885 1.3:-73037843 MS.gene91302:CDS
GTCAGCGAGTCCGTATTCTA+TGG 0.389727 1.3:+73036228 None:intergenic
ACTGCTTGGGGATGCGGTCG+AGG 0.392918 1.3:+73039850 None:intergenic
GTCCTGAAGGAGCCGCTTGA+GGG 0.407697 1.3:+73036027 None:intergenic
AATATATAAATAAACAGGTT+TGG 0.409111 1.3:+73037558 None:intergenic
GATTCTCGGATATGTTATCT+TGG 0.415479 1.3:-73037777 MS.gene91302:CDS
TCTGGCTCAACTTATGTGGT+TGG 0.418871 1.3:-73037596 MS.gene91302:CDS
GTCTGAACTGCTTGGGGATG+CGG 0.420074 1.3:+73039844 None:intergenic
TGAGTATTACATTGAGCTGT+TGG 0.425511 1.3:-73036326 MS.gene91302:CDS
TATTAATTCGTCTGGGACTC+AGG 0.429397 1.3:-73037539 MS.gene91302:intron
AATGCACCGCAGTTTCTATA+TGG 0.439793 1.3:-73038637 MS.gene91302:CDS
TACATTGAGCTGTTGGCAAA+AGG 0.452233 1.3:-73036319 MS.gene91302:CDS
TAGTATGTACAGAGGAGGTA+GGG 0.452744 1.3:-73037850 MS.gene91302:CDS
AGAGCACTGCGGAGAGGTGG+TGG 0.456289 1.3:-73036053 MS.gene91302:CDS
GAATTAATATATAAATAAAC+AGG 0.462866 1.3:+73037553 None:intergenic
AAGAGCAAAGAAGGCAAATC+CGG 0.464258 1.3:+73037801 None:intergenic
AAAATAATGTATTCAATGGA+TGG 0.467679 1.3:-73036205 MS.gene91302:CDS
TGGTCTTAATCCTTCGCAAA+TGG 0.469493 1.3:-73038617 MS.gene91302:CDS
AAAAGTTATTTGGCTCATAG+TGG 0.470154 1.3:-73037930 MS.gene91302:CDS
CGAGAATCCAAGAGCAAAGA+AGG 0.470196 1.3:+73037792 None:intergenic
TTAGTATGTACAGAGGAGGT+AGG 0.470751 1.3:-73037851 MS.gene91302:CDS
GTAGCAGTGGCGTGAGGAAA+AGG 0.475034 1.3:+73039915 None:intergenic
TTATTCTGGCTCAACTTATG+TGG 0.478590 1.3:-73037600 MS.gene91302:CDS
AGCCGTGACAGAACTTATTC+TGG 0.484856 1.3:-73037614 MS.gene91302:CDS
TGACAAAATAATGTATTCAA+TGG 0.491221 1.3:-73036209 MS.gene91302:CDS
CTTTCAGACATCTGATGCAC+AGG 0.493491 1.3:+73038571 None:intergenic
AAATAATGTATTCAATGGAT+GGG 0.501932 1.3:-73036204 MS.gene91302:CDS
TTTCCTGTCTGAACTGCTTG+GGG 0.509693 1.3:+73039838 None:intergenic
AGACAGGAAAATCTCAAAGA+TGG 0.509874 1.3:-73039825 MS.gene91302:CDS
GTGGTTCTGTTGCAGATATG+TGG 0.509883 1.3:-73036480 MS.gene91302:CDS
GTTGGAAATATCTAGTCCTC+TGG 0.517296 1.3:+73036260 None:intergenic
CTGCTTGGGGATGCGGTCGA+GGG 0.519626 1.3:+73039851 None:intergenic
GCAGCAATGATTCTGTCTGT+TGG 0.520589 1.3:-73037152 MS.gene91302:CDS
CCACAGGATGCCATAGAATA+CGG 0.527539 1.3:-73036238 MS.gene91302:CDS
AGTCCTGAAGGAGCCGCTTG+AGG 0.528742 1.3:+73036026 None:intergenic
ATTCTATGGCATCCTGTGGT+TGG 0.530734 1.3:+73036242 None:intergenic
TGCTGCTTGGCCAAACGCCA+TGG 0.533193 1.3:+73037169 None:intergenic
GGGAAAGTGCATATGAGAAG+CGG 0.538447 1.3:-73036183 MS.gene91302:CDS
ATTTATATATTAATTCGTCT+GGG 0.544932 1.3:-73037546 MS.gene91302:CDS
ATGCATACAGGCAAAAGAGC+TGG 0.551754 1.3:-73036359 MS.gene91302:intron
CATCCCCAAGCAGTTCAGAC+AGG 0.554637 1.3:-73039841 MS.gene91302:CDS
GATATGTTATCTTGGTATGC+CGG 0.559052 1.3:-73037769 MS.gene91302:intron
AGTATGTACAGAGGAGGTAG+GGG 0.560039 1.3:-73037849 MS.gene91302:CDS
TACAGAAATCATATCAGCGA+TGG 0.561888 1.3:+73037377 None:intergenic
GTTGAAGAATCGTGGATGAA+TGG 0.565697 1.3:+73039963 None:intergenic
AAGGAAGAAGCTTAGTTCCA+TGG 0.571228 1.3:+73039934 None:intergenic
AGAATAAGTTCTGTCACGGC+TGG 0.572475 1.3:+73037616 None:intergenic
CAACAGAACCACTTGATCTG+TGG 0.572805 1.3:+73036491 None:intergenic
AATAATGTATTCAATGGATG+GGG 0.574540 1.3:-73036203 MS.gene91302:CDS
AAAGTTATTTGGCTCATAGT+GGG 0.574872 1.3:-73037929 MS.gene91302:CDS
GGAAAGTGCATATGAGAAGC+GGG 0.576650 1.3:-73036182 MS.gene91302:intron
GAAATTACCTAAAGTCCTGA+AGG 0.577509 1.3:+73036014 None:intergenic
GAGGGAGCAGTTAAAAGAAA+AGG 0.578090 1.3:+73039869 None:intergenic
ATAAATAAACAGGTTTGGCA+GGG 0.579322 1.3:+73037563 None:intergenic
AGCATCAGTTTCTGATCCCA+CGG 0.581104 1.3:+73037404 None:intergenic
CAGACAGAATCATTGCTGCT+TGG 0.583497 1.3:+73037156 None:intergenic
CAAAGAGCACTGCGGAGAGG+TGG 0.584526 1.3:-73036056 MS.gene91302:CDS
CCGAAAGTCCACAGATCAAG+TGG 0.588356 1.3:-73036499 MS.gene91302:CDS
ATGAACATGTCCATTTGCGA+AGG 0.588723 1.3:+73038607 None:intergenic
TCGCGGTTTGCGTGTAGCAG+TGG 0.592449 1.3:+73039902 None:intergenic
GATTCTTCAACTACTCGCCA+TGG 0.599171 1.3:-73039951 MS.gene91302:CDS
GGCGAGTAGTTGAAGAATCG+TGG 0.602735 1.3:+73039955 None:intergenic
GATGAGTAGTGTATCTAGCA+TGG 0.604215 1.3:-73037907 MS.gene91302:CDS
GACTAGATATTTCCAACCAC+AGG 0.605387 1.3:-73036254 MS.gene91302:CDS
AGCCAGAATAAGTTCTGTCA+CGG 0.605778 1.3:+73037612 None:intergenic
GAGCACTGCGGAGAGGTGGT+GGG 0.606710 1.3:-73036052 MS.gene91302:CDS
AAGGCCTAGAAATGCTCCAC+CGG 0.607493 1.3:-73037820 MS.gene91302:CDS
GAGGAGGTAGGGGAACAGGA+AGG 0.626447 1.3:-73037839 MS.gene91302:CDS
AGCAAAGAAGGCAAATCCGG+TGG 0.627505 1.3:+73037804 None:intergenic
CTACACTGTGAATTTGGCCA+TGG 0.627831 1.3:-73037186 MS.gene91302:CDS
AAAAGGAACAGGGAAGTCAA+AGG 0.631649 1.3:-73036302 MS.gene91302:CDS
AGGTGGTGGGAACCCTCAAG+CGG 0.634420 1.3:-73036039 MS.gene91302:CDS
GAATGAGAAGAATGAGACCG+TGG 0.634632 1.3:-73037421 MS.gene91302:CDS
AGCTGTTGGCAAAAGGAACA+GGG 0.636658 1.3:-73036312 MS.gene91302:CDS
CCGTATTCTATGGCATCCTG+TGG 0.639047 1.3:+73036238 None:intergenic
AGTGTTAGTATGTACAGAGG+AGG 0.639107 1.3:-73037855 MS.gene91302:CDS
AATGAGAAGAATGAGACCGT+GGG 0.661371 1.3:-73037420 MS.gene91302:CDS
CATACAGGCAAAAGAGCTGG+AGG 0.663306 1.3:-73036356 MS.gene91302:intron
AACTTGCTAAAGACGTCCAG+AGG 0.663442 1.3:-73036276 MS.gene91302:CDS
GATGTCTGAAAGAGTTACAG+AGG 0.663589 1.3:-73038560 MS.gene91302:intron
ATGAGTGTTAGTATGTACAG+AGG 0.665010 1.3:-73037858 MS.gene91302:CDS
GGATACTTACTGGATGAATG+TGG 0.665949 1.3:+73037104 None:intergenic
GCTCAAAGAGCACTGCGGAG+AGG 0.670869 1.3:-73036059 MS.gene91302:CDS
ATGAATGTGGCAGTACAGCA+CGG 0.671866 1.3:+73037117 None:intergenic
TTGCGTGTAGCAGTGGCGTG+AGG 0.675235 1.3:+73039909 None:intergenic
GAAAAGGACTTGAAGCATCG+CGG 0.687598 1.3:+73039885 None:intergenic
ATGAATGGTGAAGAGAGTGA+TGG 0.712432 1.3:+73039978 None:intergenic
TTAAGACCATATAGAAACTG+CGG 0.725517 1.3:+73038631 None:intergenic
TACGTGCTCAAAGAGCACTG+CGG 0.848626 1.3:-73036064 MS.gene91302:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATTAATATATAAATAAAC+AGG + chr1.3:73038468-73038487 None:intergenic 10.0%
!! TAAATTAGAATTAGAAAAAA+TGG + chr1.3:73036252-73036271 None:intergenic 10.0%
!! TTTGAATATATTTATCATTT+GGG + chr1.3:73037257-73037276 None:intergenic 10.0%
!!! TTCTATTTATTGATTATATT+CGG - chr1.3:73039633-73039652 MS.gene91302:intron 10.0%
!! AAAATATTGAAAGGATATAA+AGG + chr1.3:73037919-73037938 None:intergenic 15.0%
!! AATATATAAATAAACAGGTT+TGG + chr1.3:73038463-73038482 None:intergenic 15.0%
!! ATTTATATATTAATTCGTCT+GGG - chr1.3:73038472-73038491 MS.gene91302:intron 15.0%
!! CAAAATATATTTACATACAT+AGG + chr1.3:73038340-73038359 None:intergenic 15.0%
!! GTTTGAATATATTTATCATT+TGG + chr1.3:73037258-73037277 None:intergenic 15.0%
!! TAATTCTAATTTACTCTATT+GGG - chr1.3:73036259-73036278 MS.gene91302:CDS 15.0%
!! TATAATGCATGAAATAATTA+TGG + chr1.3:73039894-73039913 None:intergenic 15.0%
!! TATGTGGTTATTTATATAAA+TGG - chr1.3:73038548-73038567 MS.gene91302:intron 15.0%
!! TATTTATATATTAATTCGTC+TGG - chr1.3:73038471-73038490 MS.gene91302:intron 15.0%
!! TTAATTTAGATGAGAAAATT+AGG - chr1.3:73037213-73037232 MS.gene91302:intron 15.0%
!!! ATATGATTCATGAATATTTT+TGG - chr1.3:73039222-73039241 MS.gene91302:intron 15.0%
!!! TCTATTTATTGATTATATTC+GGG - chr1.3:73039634-73039653 MS.gene91302:intron 15.0%
!!! TTGAAACTTTTAAAACATAA+AGG + chr1.3:73037863-73037844 None:intergenic 15.0%
!!! TTGAAACTTTTAAAACATAA+GGG - chr1.3:73037844-73037863 MS.gene91302:CDS 15.0%
!!! TTGAAACTTTTAAAACATAA+GGG + chr1.3:73037863-73037844 None:intergenic 15.0%
!! AAAAAAATATTAGGAAGAGT+AGG + chr1.3:73038778-73038797 None:intergenic 20.0%
!! AAAATAATGTATTCAATGGA+TGG - chr1.3:73039813-73039832 MS.gene91302:intron 20.0%
!! AAAGTTTACTTAAGAAGAAT+TGG - chr1.3:73037136-73037155 MS.gene91302:CDS 20.0%
!! AAATAATGTATTCAATGGAT+GGG - chr1.3:73039814-73039833 MS.gene91302:intron 20.0%
!! AACATCAACATAAACTAAAT+AGG + chr1.3:73036891-73036910 None:intergenic 20.0%
!! AAGATAAAATGTCAAGATTA+GGG + chr1.3:73037329-73037348 None:intergenic 20.0%
!! AAGTTTACTTAAGAAGAATT+GGG - chr1.3:73037137-73037156 MS.gene91302:CDS 20.0%
!! AGATAAAAACAAAACATATC+AGG + chr1.3:73038282-73038301 None:intergenic 20.0%
!! CTAATTCTAATTTACTCTAT+TGG - chr1.3:73036258-73036277 MS.gene91302:CDS 20.0%
!! GAAACCTAAAATAAACATAA+GGG - chr1.3:73037875-73037894 MS.gene91302:CDS 20.0%
!! GAAACCTAAAATAAACATAA+GGG + chr1.3:73037894-73037875 None:intergenic 20.0%
!! TAAGATAAAATGTCAAGATT+AGG + chr1.3:73037330-73037349 None:intergenic 20.0%
!! TAAGTTTCAAAAGTAACAAT+TGG - chr1.3:73036528-73036547 MS.gene91302:intron 20.0%
!! TCATATTTATAAAACCTAGA+AGG + chr1.3:73039208-73039227 None:intergenic 20.0%
!! TGAAACCTAAAATAAACATA+AGG - chr1.3:73037874-73037893 MS.gene91302:CDS 20.0%
!! TGAAACCTAAAATAAACATA+AGG + chr1.3:73037893-73037874 None:intergenic 20.0%
!! TGACAAAATAATGTATTCAA+TGG - chr1.3:73039809-73039828 MS.gene91302:intron 20.0%
!! TGACTTAACAAAATATTGAA+AGG + chr1.3:73037928-73037947 None:intergenic 20.0%
!! TTTACGAAACTAAAAACTAA+AGG + chr1.3:73036946-73036965 None:intergenic 20.0%
!!! AAAAAAAGCAACTTTTAATC+CGG - chr1.3:73036327-73036346 MS.gene91302:CDS 20.0%
!!! AATTATTTATCGTGTCTTTT+TGG - chr1.3:73039164-73039183 MS.gene91302:intron 20.0%
!!! AATTGAATAGTTTGAAACTT+GGG - chr1.3:73037296-73037315 MS.gene91302:intron 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG - chr1.3:73037555-73037574 MS.gene91302:CDS 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG + chr1.3:73037574-73037555 None:intergenic 20.0%
!!! ATTTGTCTAATTATTGATTG+TGG - chr1.3:73037964-73037983 MS.gene91302:intron 20.0%
!!! CTTGAAACTTTTAAAACATA+AGG - chr1.3:73037843-73037862 MS.gene91302:CDS 20.0%
!!! CTTGAAACTTTTAAAACATA+AGG + chr1.3:73037862-73037843 None:intergenic 20.0%
!!! TGGAATTGATTTTTTGTTTA+TGG - chr1.3:73036467-73036486 MS.gene91302:intron 20.0%
!!! TTGAAAACTTTAAAACGTAA+GGG - chr1.3:73037815-73037834 MS.gene91302:CDS 20.0%
!!! TTTTGTTTTTATCTCAATCT+TGG - chr1.3:73038288-73038307 MS.gene91302:intron 20.0%
! AACTAAATAGGAAACAAAGA+CGG + chr1.3:73036879-73036898 None:intergenic 25.0%
! AATAATGTATTCAATGGATG+GGG - chr1.3:73039815-73039834 MS.gene91302:intron 25.0%
! AATCTGTACGAATCATAAAA+GGG + chr1.3:73038379-73038398 None:intergenic 25.0%
! ACCACATATTATACATTACA+AGG + chr1.3:73038536-73038555 None:intergenic 25.0%
! ACTAGACCTTATAAAGATTT+GGG - chr1.3:73037650-73037669 MS.gene91302:intron 25.0%
! ACTTAACAGATGTAAACTAT+AGG + chr1.3:73036513-73036532 None:intergenic 25.0%
! ATTAAACTCAATATCATGTC+AGG - chr1.3:73037748-73037767 MS.gene91302:intron 25.0%
! CAATTCCACAATAAAATTGA+TGG + chr1.3:73036455-73036474 None:intergenic 25.0%
! CATCAGATTTGATATACTAT+AGG + chr1.3:73038811-73038830 None:intergenic 25.0%
! GTAAAAAGATGAAATCATCA+AGG + chr1.3:73038315-73038334 None:intergenic 25.0%
! TATTATGTAAGGCTTGAAAT+TGG - chr1.3:73037180-73037199 MS.gene91302:CDS 25.0%
! TCCTTGTAATGTATAATATG+TGG - chr1.3:73038532-73038551 MS.gene91302:intron 25.0%
! TGAAAGGGGAAAAAAATATT+AGG + chr1.3:73038787-73038806 None:intergenic 25.0%
! TGGGTAAATGTTATTATGTA+AGG - chr1.3:73037169-73037188 MS.gene91302:CDS 25.0%
! TGTTAACCCAAATCTTTATA+AGG + chr1.3:73037659-73037678 None:intergenic 25.0%
! TTAAACTCAATATCATGTCA+GGG - chr1.3:73037749-73037768 MS.gene91302:intron 25.0%
! TTGCTTGTAAACACAATATA+GGG - chr1.3:73037029-73037048 MS.gene91302:intron 25.0%
! TTTAGATGAGAAAATTAGGA+AGG - chr1.3:73037217-73037236 MS.gene91302:intron 25.0%
! TTTGCTTGTAAACACAATAT+AGG - chr1.3:73037028-73037047 MS.gene91302:intron 25.0%
!! AAAAAAGCAACTTTTAATCC+GGG - chr1.3:73036328-73036347 MS.gene91302:CDS 25.0%
!! CAATTGAATAGTTTGAAACT+TGG - chr1.3:73037295-73037314 MS.gene91302:intron 25.0%
!! TACTGTCTCTATTATTGTTT+TGG - chr1.3:73039607-73039626 MS.gene91302:intron 25.0%
!! TGATATACTATAGGTTGAAA+GGG + chr1.3:73038802-73038821 None:intergenic 25.0%
!! TTGATATACTATAGGTTGAA+AGG + chr1.3:73038803-73038822 None:intergenic 25.0%
!!! ATGTTATTTTGTTGTAGCTT+TGG - chr1.3:73036920-73036939 MS.gene91302:intron 25.0%
!!! CTTGAAAACTTTAAAACGTA+AGG - chr1.3:73037814-73037833 MS.gene91302:CDS 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG - chr1.3:73037526-73037545 MS.gene91302:intron 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG + chr1.3:73037545-73037526 None:intergenic 25.0%
!!! TCATGAATATTTTTGGAGAA+AGG - chr1.3:73039229-73039248 MS.gene91302:intron 25.0%
!!! TGATCCCTTATGTTTATTTT+AGG + chr1.3:73037882-73037901 None:intergenic 25.0%
AAACAAAAAACTGACCGAAA+CGG + chr1.3:73039350-73039369 None:intergenic 30.0%
AAACATATCAGGATACTTAC+CGG + chr1.3:73038271-73038290 None:intergenic 30.0%
AAATACGCGGTGATAAAATT+TGG + chr1.3:73038009-73038028 None:intergenic 30.0%
AAGACTAATCCCTAAACATT+TGG + chr1.3:73039070-73039089 None:intergenic 30.0%
AATACGCGGTGATAAAATTT+GGG + chr1.3:73038008-73038027 None:intergenic 30.0%
ACTAAATAGGAAACAAAGAC+GGG + chr1.3:73036878-73036897 None:intergenic 30.0%
ACTTAAGAAGAATTGGGAAT+GGG - chr1.3:73037143-73037162 MS.gene91302:CDS 30.0%
AGACTAATCCCTAAACATTT+GGG + chr1.3:73039069-73039088 None:intergenic 30.0%
AGGTTCTCATCATTTATATC+CGG - chr1.3:73037478-73037497 MS.gene91302:intron 30.0%
ATAAATAAACAGGTTTGGCA+GGG + chr1.3:73038458-73038477 None:intergenic 30.0%
ATCCAAAATGTTATTCACGT+TGG + chr1.3:73037791-73037810 None:intergenic 30.0%
ATCTTTATAAGGTCTAGTGA+CGG + chr1.3:73037648-73037667 None:intergenic 30.0%
ATTCTGTCTGTTGGAAAAAA+GGG - chr1.3:73038875-73038894 MS.gene91302:intron 30.0%
CAATACTGAAATGAACACTT+TGG + chr1.3:73039297-73039316 None:intergenic 30.0%
CAATCTGTACGAATCATAAA+AGG + chr1.3:73038380-73038399 None:intergenic 30.0%
CACTAGACCTTATAAAGATT+TGG - chr1.3:73037649-73037668 MS.gene91302:intron 30.0%
TAAAACCTAGAAGGAATCAT+TGG + chr1.3:73039199-73039218 None:intergenic 30.0%
TACTTAAGAAGAATTGGGAA+TGG - chr1.3:73037142-73037161 MS.gene91302:CDS 30.0%
TATAAATAAACAGGTTTGGC+AGG + chr1.3:73038459-73038478 None:intergenic 30.0%
TATAGTGTTAGTGATTTGAC+AGG - chr1.3:73038048-73038067 MS.gene91302:intron 30.0%
TCAGTATTGCGTTTGAATTA+GGG - chr1.3:73039308-73039327 MS.gene91302:intron 30.0%
TCATTCTTCTCATTCTAATC+CGG + chr1.3:73038592-73038611 None:intergenic 30.0%
TCTGAATACTGAATGATTTG+TGG - chr1.3:73038981-73039000 MS.gene91302:intron 30.0%
TGCATTGAGTGTTAATGTAT+AGG - chr1.3:73039269-73039288 MS.gene91302:intron 30.0%
TTAAGACCATATAGAAACTG+CGG + chr1.3:73037390-73037409 None:intergenic 30.0%
TTATGTATCATATGCAGTGA+TGG - chr1.3:73037347-73037366 MS.gene91302:intron 30.0%
TTCAGTATTGCGTTTGAATT+AGG - chr1.3:73039307-73039326 MS.gene91302:intron 30.0%
TTCATCTGCCAAAAGTTATT+TGG - chr1.3:73038078-73038097 MS.gene91302:intron 30.0%
TTCCACAATAAAATTGATGG+AGG + chr1.3:73036452-73036471 None:intergenic 30.0%
TTGTACAATAGCTATGTACA+AGG - chr1.3:73039029-73039048 MS.gene91302:intron 30.0%
TTTCAAAAGTTTACCCAGAT+AGG + chr1.3:73038938-73038957 None:intergenic 30.0%
! AAAAGTTATTTGGCTCATAG+TGG - chr1.3:73038088-73038107 MS.gene91302:intron 30.0%
! AAAGATTTGGGTTAACAATG+CGG - chr1.3:73037662-73037681 MS.gene91302:intron 30.0%
! AAAGTTATTTGGCTCATAGT+GGG - chr1.3:73038089-73038108 MS.gene91302:intron 30.0%
! ACTATGAGCCAAATAACTTT+TGG + chr1.3:73038089-73038108 None:intergenic 30.0%
! GATATACTATAGGTTGAAAG+GGG + chr1.3:73038801-73038820 None:intergenic 30.0%
! TTCCAACGTGAATAACATTT+TGG - chr1.3:73037786-73037805 MS.gene91302:CDS 30.0%
! TTTTATCTTTACATCGTCAG+TGG - chr1.3:73039414-73039433 MS.gene91302:intron 30.0%
!! ATTAGTCTTAGAATCAGCTA+AGG - chr1.3:73039081-73039100 MS.gene91302:intron 30.0%
!! TGGTCCCTTATGTTTATTTT+AGG - chr1.3:73037515-73037534 MS.gene91302:intron 30.0%
!!! AAAATCTGCTACTGGTTTTA+AGG + chr1.3:73036564-73036583 None:intergenic 30.0%
!!! AAATCTGCTACTGGTTTTAA+GGG + chr1.3:73036563-73036582 None:intergenic 30.0%
!!! ATCATCGTTTTTTCTTACTG+CGG - chr1.3:73039459-73039478 MS.gene91302:intron 30.0%
AAAACACAACATTGCGATGT+GGG + chr1.3:73038695-73038714 None:intergenic 35.0%
AAAATGTCAAGATTAGGGCT+AGG + chr1.3:73037324-73037343 None:intergenic 35.0%
AAGAATTGGGAATGGGAATT+GGG - chr1.3:73037150-73037169 MS.gene91302:CDS 35.0%
AATTCAGCAAAATCTGCTAC+TGG + chr1.3:73036572-73036591 None:intergenic 35.0%
AGACAGGAAAATCTCAAAGA+TGG - chr1.3:73036193-73036212 MS.gene91302:CDS 35.0%
ATAAGATTAACTCCTCCTCT+GGG - chr1.3:73036639-73036658 MS.gene91302:intron 35.0%
ATAAGATTATCGTCTCCTTG+TGG - chr1.3:73036598-73036617 MS.gene91302:intron 35.0%
ATCAGCATAAGTTGCAGAAA+GGG - chr1.3:73036983-73037002 MS.gene91302:intron 35.0%
ATCCAGTAAGTATCCTATCT+GGG - chr1.3:73038922-73038941 MS.gene91302:intron 35.0%
ATGAGTGTTAGTATGTACAG+AGG - chr1.3:73038160-73038179 MS.gene91302:intron 35.0%
CTTCTGAACAGTTAAATACG+CGG + chr1.3:73038022-73038041 None:intergenic 35.0%
GAATCAAGCCCAAATGTTTA+GGG - chr1.3:73039058-73039077 MS.gene91302:intron 35.0%
GATATGTTATCTTGGTATGC+CGG - chr1.3:73038249-73038268 MS.gene91302:intron 35.0%
GATTCTCGGATATGTTATCT+TGG - chr1.3:73038241-73038260 MS.gene91302:intron 35.0%
GATTCTGTCTGTTGGAAAAA+AGG - chr1.3:73038874-73038893 MS.gene91302:intron 35.0%
TACAGAAATCATATCAGCGA+TGG + chr1.3:73038644-73038663 None:intergenic 35.0%
TAGGGATATTTCTTCCGTTT+CGG - chr1.3:73039333-73039352 MS.gene91302:intron 35.0%
TATATTCGGGAAATGCATAC+AGG - chr1.3:73039647-73039666 MS.gene91302:intron 35.0%
TATCAGCATAAGTTGCAGAA+AGG - chr1.3:73036982-73037001 MS.gene91302:intron 35.0%
TCCCTAAAATAATTCAGACC+CGG + chr1.3:73036349-73036368 None:intergenic 35.0%
TGAGAAAATTAGGAAGGTAG+AGG - chr1.3:73037223-73037242 MS.gene91302:intron 35.0%
TGAGTATTACATTGAGCTGT+TGG - chr1.3:73039692-73039711 MS.gene91302:intron 35.0%
TGATGTCTACACTGTGAATT+TGG - chr1.3:73038826-73038845 MS.gene91302:intron 35.0%
TGCGTTTGAATTAGGGAATA+GGG - chr1.3:73039315-73039334 MS.gene91302:intron 35.0%
TTGCGTTTGAATTAGGGAAT+AGG - chr1.3:73039314-73039333 MS.gene91302:intron 35.0%
! AAGATTTGGGTTAACAATGC+GGG - chr1.3:73037663-73037682 MS.gene91302:intron 35.0%
! ATCCGGGTCTGAATTATTTT+AGG - chr1.3:73036344-73036363 MS.gene91302:CDS 35.0%
! ATTAGGAAGAGTAGGTTGAA+AGG + chr1.3:73038770-73038789 None:intergenic 35.0%
! TGCCTCCATCAATTTTATTG+TGG - chr1.3:73036447-73036466 MS.gene91302:intron 35.0%
! TGTTGCAGATATGTGGATTA+AGG - chr1.3:73039545-73039564 MS.gene91302:intron 35.0%
! TTAGGAAGAGTAGGTTGAAA+GGG + chr1.3:73038769-73038788 None:intergenic 35.0%
!! TCCGGGTCTGAATTATTTTA+GGG - chr1.3:73036345-73036364 MS.gene91302:CDS 35.0%
!! TTATTCTGGCTCAACTTATG+TGG - chr1.3:73038418-73038437 MS.gene91302:intron 35.0%
!!! AATCTGCTACTGGTTTTAAG+GGG + chr1.3:73036562-73036581 None:intergenic 35.0%
!!! TCATCGTTTTTTCTTACTGC+GGG - chr1.3:73039460-73039479 MS.gene91302:intron 35.0%
AAAAGGAACAGGGAAGTCAA+AGG - chr1.3:73039716-73039735 MS.gene91302:intron 40.0%
AAGAGCAAAGAAGGCAAATC+CGG + chr1.3:73038220-73038239 None:intergenic 40.0%
AAGATGTTCAACGCGAACAA+GGG - chr1.3:73037101-73037120 MS.gene91302:intron 40.0%
AAGGAAGAAGCTTAGTTCCA+TGG + chr1.3:73036087-73036106 None:intergenic 40.0%
AATGAGAAGAATGAGACCGT+GGG - chr1.3:73038598-73038617 MS.gene91302:CDS 40.0%
AATGCACCGCAGTTTCTATA+TGG - chr1.3:73037381-73037400 MS.gene91302:CDS 40.0%
ACCATCCAATGATTCCTTCT+AGG - chr1.3:73039191-73039210 MS.gene91302:intron 40.0%
ACCTAGAAGGAATCATTGGA+TGG + chr1.3:73039195-73039214 None:intergenic 40.0%
ACTCAATATCATGTCAGGGA+AGG - chr1.3:73037753-73037772 MS.gene91302:intron 40.0%
AGCCAGAATAAGTTCTGTCA+CGG + chr1.3:73038409-73038428 None:intergenic 40.0%
AGTGATGTATGTCGTATGAG+AGG - chr1.3:73036717-73036736 MS.gene91302:intron 40.0%
AGTGTTAGTATGTACAGAGG+AGG - chr1.3:73038163-73038182 MS.gene91302:intron 40.0%
ATAGCTATGTACAAGGCTGA+AGG - chr1.3:73039036-73039055 MS.gene91302:intron 40.0%
ATCCGGCTTAATTGCATGTT+TGG - chr1.3:73037495-73037514 MS.gene91302:intron 40.0%
ATCCTTGTACCTTAGATGAG+TGG - chr1.3:73036663-73036682 MS.gene91302:intron 40.0%
ATGAACATGTCCATTTGCGA+AGG + chr1.3:73037414-73037433 None:intergenic 40.0%
ATGAATGGTGAAGAGAGTGA+TGG + chr1.3:73036043-73036062 None:intergenic 40.0%
CAAAACACAACATTGCGATG+TGG + chr1.3:73038696-73038715 None:intergenic 40.0%
CATCCAGTAAGTATCCTATC+TGG - chr1.3:73038921-73038940 MS.gene91302:intron 40.0%
CTCAATATCATGTCAGGGAA+GGG - chr1.3:73037754-73037773 MS.gene91302:intron 40.0%
CTTCTTTGCTCTTGGATTCT+CGG - chr1.3:73038227-73038246 MS.gene91302:intron 40.0%
CTTGTGAGTGCTTTAGTTGT+CGG - chr1.3:73036828-73036847 MS.gene91302:intron 40.0%
GAAGAATTGGGAATGGGAAT+TGG - chr1.3:73037149-73037168 MS.gene91302:CDS 40.0%
GAAGACAGCAAACATGTACA+CGG + chr1.3:73039579-73039598 None:intergenic 40.0%
GACCAAACATGCAATTAAGC+CGG + chr1.3:73037500-73037519 None:intergenic 40.0%
GACTAGATATTTCCAACCAC+AGG - chr1.3:73039764-73039783 MS.gene91302:intron 40.0%
GAGGGAGCAGTTAAAAGAAA+AGG + chr1.3:73036152-73036171 None:intergenic 40.0%
GATAAGATTAACTCCTCCTC+TGG - chr1.3:73036638-73036657 MS.gene91302:intron 40.0%
GATGAGTAGTGTATCTAGCA+TGG - chr1.3:73038111-73038130 MS.gene91302:intron 40.0%
GATGTCTGAAAGAGTTACAG+AGG - chr1.3:73037458-73037477 MS.gene91302:intron 40.0%
GGAATCAAGCCCAAATGTTT+AGG - chr1.3:73039057-73039076 MS.gene91302:intron 40.0%
GGATACTTACTGGATGAATG+TGG + chr1.3:73038917-73038936 None:intergenic 40.0%
GGCAGAGTTATGTGAAGTTT+AGG - chr1.3:73037050-73037069 MS.gene91302:intron 40.0%
GTCTTTCTTTCCTCTGTTTC+CGG - chr1.3:73038570-73038589 MS.gene91302:CDS 40.0%
GTGATGTATGTCGTATGAGA+GGG - chr1.3:73036718-73036737 MS.gene91302:intron 40.0%
GTTGAAGAATCGTGGATGAA+TGG + chr1.3:73036058-73036077 None:intergenic 40.0%
GTTGGAAATATCTAGTCCTC+TGG + chr1.3:73039761-73039780 None:intergenic 40.0%
TAAGATGTTCAACGCGAACA+AGG - chr1.3:73037100-73037119 MS.gene91302:intron 40.0%
TACATCGTCAGTGGAATGTA+AGG - chr1.3:73039423-73039442 MS.gene91302:intron 40.0%
TACATTGAGCTGTTGGCAAA+AGG - chr1.3:73039699-73039718 MS.gene91302:intron 40.0%
TACCCAGATAGGATACTTAC+TGG + chr1.3:73038927-73038946 None:intergenic 40.0%
TAGTATGTACAGAGGAGGTA+GGG - chr1.3:73038168-73038187 MS.gene91302:intron 40.0%
TCATTCTAATCCGGAAACAG+AGG + chr1.3:73038583-73038602 None:intergenic 40.0%
TTAGTATGTACAGAGGAGGT+AGG - chr1.3:73038167-73038186 MS.gene91302:intron 40.0%
! ACAACTAAAGCACTCACAAG+GGG + chr1.3:73036828-73036847 None:intergenic 40.0%
! ATTTTCCTGTCTGAACTGCT+TGG + chr1.3:73036185-73036204 None:intergenic 40.0%
! CACATCGCAATGTTGTGTTT+TGG - chr1.3:73038694-73038713 MS.gene91302:intron 40.0%
! GACAACTAAAGCACTCACAA+GGG + chr1.3:73036829-73036848 None:intergenic 40.0%
! TAGGAAGAGTAGGTTGAAAG+GGG + chr1.3:73038768-73038787 None:intergenic 40.0%
! TATAAGGTCTAGTGACGGAA+GGG + chr1.3:73037643-73037662 None:intergenic 40.0%
! TATTAATTCGTCTGGGACTC+AGG - chr1.3:73038479-73038498 MS.gene91302:intron 40.0%
! TGGTCTTAATCCTTCGCAAA+TGG - chr1.3:73037401-73037420 MS.gene91302:CDS 40.0%
! TTAGTTGTCGGTGCAGTTTT+TGG - chr1.3:73036840-73036859 MS.gene91302:intron 40.0%
! TTATAAGGTCTAGTGACGGA+AGG + chr1.3:73037644-73037663 None:intergenic 40.0%
! TTTTCCTGTCTGAACTGCTT+GGG + chr1.3:73036184-73036203 None:intergenic 40.0%
!! CTGTACTACTGATTTCCACA+AGG + chr1.3:73036616-73036635 None:intergenic 40.0%
AGAATAAGTTCTGTCACGGC+TGG + chr1.3:73038405-73038424 None:intergenic 45.0%
AGATGTTCAACGCGAACAAG+GGG - chr1.3:73037102-73037121 MS.gene91302:intron 45.0%
AGCATCAGTTTCTGATCCCA+CGG + chr1.3:73038617-73038636 None:intergenic 45.0%
AGCCGTGACAGAACTTATTC+TGG - chr1.3:73038404-73038423 MS.gene91302:intron 45.0%
AGCTGTTGGCAAAAGGAACA+GGG - chr1.3:73039706-73039725 MS.gene91302:intron 45.0%
AGTATGTACAGAGGAGGTAG+GGG - chr1.3:73038169-73038188 MS.gene91302:intron 45.0%
ATGAATGTGGCAGTACAGCA+CGG + chr1.3:73038904-73038923 None:intergenic 45.0%
ATGCATACAGGCAAAAGAGC+TGG - chr1.3:73039659-73039678 MS.gene91302:intron 45.0%
ATTCTATGGCATCCTGTGGT+TGG + chr1.3:73039779-73039798 None:intergenic 45.0%
CAACAGAACCACTTGATCTG+TGG + chr1.3:73039530-73039549 None:intergenic 45.0%
CACTTGATCTGTGGACTTTC+GGG + chr1.3:73039521-73039540 None:intergenic 45.0%
CAGACAGAATCATTGCTGCT+TGG + chr1.3:73038865-73038884 None:intergenic 45.0%
CCACAGGATGCCATAGAATA+CGG - chr1.3:73039780-73039799 MS.gene91302:intron 45.0%
CCACTTGATCTGTGGACTTT+CGG + chr1.3:73039522-73039541 None:intergenic 45.0%
CGAGAATCCAAGAGCAAAGA+AGG + chr1.3:73038229-73038248 None:intergenic 45.0%
CTACACTGTGAATTTGGCCA+TGG - chr1.3:73038832-73038851 MS.gene91302:intron 45.0%
CTTGTACCTTAGATGAGTGG+CGG - chr1.3:73036666-73036685 MS.gene91302:intron 45.0%
CTTTCAGACATCTGATGCAC+AGG + chr1.3:73037450-73037469 None:intergenic 45.0%
GAATGAGAAGAATGAGACCG+TGG - chr1.3:73038597-73038616 MS.gene91302:CDS 45.0%
GATTCTTCAACTACTCGCCA+TGG - chr1.3:73036067-73036086 MS.gene91302:CDS 45.0%
GCAGCAATGATTCTGTCTGT+TGG - chr1.3:73038866-73038885 MS.gene91302:intron 45.0%
GGATTTGCCTTCTTTGCTCT+TGG - chr1.3:73038219-73038238 MS.gene91302:intron 45.0%
TGTGTGTGTATGTGTGTGGT+GGG - chr1.3:73036778-73036797 MS.gene91302:intron 45.0%
TGTGTGTGTGTGTATGTGTG+TGG - chr1.3:73036774-73036793 MS.gene91302:intron 45.0%
TTGTACCTTAGATGAGTGGC+GGG - chr1.3:73036667-73036686 MS.gene91302:intron 45.0%
TTTCCTGTCTGAACTGCTTG+GGG + chr1.3:73036183-73036202 None:intergenic 45.0%
! AAATCCGGTGGAGCATTTCT+AGG + chr1.3:73038205-73038224 None:intergenic 45.0%
! AGGAAGAGTAGGTTGAAAGG+GGG + chr1.3:73038767-73038786 None:intergenic 45.0%
! CGACAACTAAAGCACTCACA+AGG + chr1.3:73036830-73036849 None:intergenic 45.0%
! GGAAAGTGCATATGAGAAGC+GGG - chr1.3:73039836-73039855 MS.gene91302:CDS 45.0%
! GGGAAAGTGCATATGAGAAG+CGG - chr1.3:73039835-73039854 MS.gene91302:CDS 45.0%
! GTGGTTCTGTTGCAGATATG+TGG - chr1.3:73039538-73039557 MS.gene91302:intron 45.0%
! TCTGGCTCAACTTATGTGGT+TGG - chr1.3:73038422-73038441 MS.gene91302:intron 45.0%
!! AACTTGCTAAAGACGTCCAG+AGG - chr1.3:73039742-73039761 MS.gene91302:intron 45.0%
!! GAAAAGGACTTGAAGCATCG+CGG + chr1.3:73036136-73036155 None:intergenic 45.0%
!!! GCAGTTTTTGGAACTTCGCT+TGG - chr1.3:73036852-73036871 MS.gene91302:intron 45.0%
AAGGCCTAGAAATGCTCCAC+CGG - chr1.3:73038198-73038217 MS.gene91302:intron 50.0%
AGCAAAGAAGGCAAATCCGG+TGG + chr1.3:73038217-73038236 None:intergenic 50.0%
ATCACTATCGACCCCAACAC+AGG + chr1.3:73036703-73036722 None:intergenic 50.0%
CATACAGGCAAAAGAGCTGG+AGG - chr1.3:73039662-73039681 MS.gene91302:intron 50.0%
CCGAAAGTCCACAGATCAAG+TGG - chr1.3:73039519-73039538 MS.gene91302:intron 50.0%
CCGTATTCTATGGCATCCTG+TGG + chr1.3:73039783-73039802 None:intergenic 50.0%
CGTATGAGAGGGATTGTGCT+AGG - chr1.3:73036729-73036748 MS.gene91302:intron 50.0%
GAGCTGTTGGCAAAAGGAAC+AGG - chr1.3:73039705-73039724 MS.gene91302:intron 50.0%
GGCGAGTAGTTGAAGAATCG+TGG + chr1.3:73036066-73036085 None:intergenic 50.0%
GGTGGAACTTGTCCTGTGTT+GGG - chr1.3:73036688-73036707 MS.gene91302:intron 50.0%
GTCAGCGAGTCCGTATTCTA+TGG + chr1.3:73039793-73039812 None:intergenic 50.0%
GTGAATTTGGCCATGGCGTT+TGG - chr1.3:73038839-73038858 MS.gene91302:intron 50.0%
GTGGAACTTGTCCTGTGTTG+GGG - chr1.3:73036689-73036708 MS.gene91302:intron 50.0%
GTGTGTGTATGTGTGTGGTG+GGG - chr1.3:73036779-73036798 MS.gene91302:intron 50.0%
GTGTGTGTGTATGTGTGTGG+TGG - chr1.3:73036777-73036796 MS.gene91302:intron 50.0%
TAAGGTACAAGGATGCCCAG+AGG + chr1.3:73036657-73036676 None:intergenic 50.0%
TGGGTTAACAATGCGGGTGA+TGG - chr1.3:73037669-73037688 MS.gene91302:intron 50.0%
TGTGTGTATGTGTGTGGTGG+GGG - chr1.3:73036780-73036799 MS.gene91302:intron 50.0%
! ACTAAAGCACTCACAAGGGG+AGG + chr1.3:73036825-73036844 None:intergenic 50.0%
! CGCCACTCATCTAAGGTACA+AGG + chr1.3:73036668-73036687 None:intergenic 50.0%
!! TACGTGCTCAAAGAGCACTG+CGG - chr1.3:73039954-73039973 MS.gene91302:CDS 50.0%
CATCCCCAAGCAGTTCAGAC+AGG - chr1.3:73036177-73036196 MS.gene91302:intron 55.0%
GGGTGGAACTTGTCCTGTGT+TGG - chr1.3:73036687-73036706 MS.gene91302:intron 55.0%
GTAGCAGTGGCGTGAGGAAA+AGG + chr1.3:73036106-73036125 None:intergenic 55.0%
GTCTGAACTGCTTGGGGATG+CGG + chr1.3:73036177-73036196 None:intergenic 55.0%
TACAGAGGAGGTAGGGGAAC+AGG - chr1.3:73038175-73038194 MS.gene91302:intron 55.0%
TTCCACCCGCCACTCATCTA+AGG + chr1.3:73036675-73036694 None:intergenic 55.0%
! GTGTGTATGTGTGTGGTGGG+GGG - chr1.3:73036781-73036800 MS.gene91302:intron 55.0%
! TACCTTAGATGAGTGGCGGG+TGG - chr1.3:73036670-73036689 MS.gene91302:intron 55.0%
AACCCTCAAGCGGCTCCTTC+AGG - chr1.3:73039989-73040008 MS.gene91302:CDS 60.0%
AGTCCTGAAGGAGCCGCTTG+AGG + chr1.3:73039995-73040014 None:intergenic 60.0%
CTAGGTCTTGCAGCGTCGTG+GGG - chr1.3:73036747-73036766 MS.gene91302:intron 60.0%
GAGGAGGTAGGGGAACAGGA+AGG - chr1.3:73038179-73038198 MS.gene91302:intron 60.0%
GCTAGGTCTTGCAGCGTCGT+GGG - chr1.3:73036746-73036765 MS.gene91302:intron 60.0%
GGTACAAGGATGCCCAGAGG+AGG + chr1.3:73036654-73036673 None:intergenic 60.0%
GTCCTGAAGGAGCCGCTTGA+GGG + chr1.3:73039994-73040013 None:intergenic 60.0%
TCGCGGTTTGCGTGTAGCAG+TGG + chr1.3:73036119-73036138 None:intergenic 60.0%
TGCTAGGTCTTGCAGCGTCG+TGG - chr1.3:73036745-73036764 MS.gene91302:intron 60.0%
TTGCGTGTAGCAGTGGCGTG+AGG + chr1.3:73036112-73036131 None:intergenic 60.0%
! TGCTGCTTGGCCAAACGCCA+TGG + chr1.3:73038852-73038871 None:intergenic 60.0%
!! AGGTGGTGGGAACCCTCAAG+CGG - chr1.3:73039979-73039998 MS.gene91302:CDS 60.0%
!! CAAAGAGCACTGCGGAGAGG+TGG - chr1.3:73039962-73039981 MS.gene91302:CDS 60.0%
!! GCTCAAAGAGCACTGCGGAG+AGG - chr1.3:73039959-73039978 MS.gene91302:CDS 60.0%
ACTGCTTGGGGATGCGGTCG+AGG + chr1.3:73036171-73036190 None:intergenic 65.0%
CTGCTTGGGGATGCGGTCGA+GGG + chr1.3:73036170-73036189 None:intergenic 65.0%
! GAGCACTGCGGAGAGGTGGT+GGG - chr1.3:73039966-73039985 MS.gene91302:CDS 65.0%
! GTGTGTGGTGGGGGGTTGTC+TGG - chr1.3:73036789-73036808 MS.gene91302:intron 65.0%
!! AGAGCACTGCGGAGAGGTGG+TGG - chr1.3:73039965-73039984 MS.gene91302:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 73036022 73040018 73036022 ID=MS.gene91302
chr1.3 mRNA 73036022 73040018 73036022 ID=MS.gene91302.t1;Parent=MS.gene91302
chr1.3 exon 73039823 73040018 73039823 ID=MS.gene91302.t1.exon1;Parent=MS.gene91302.t1
chr1.3 CDS 73039823 73040018 73039823 ID=cds.MS.gene91302.t1;Parent=MS.gene91302.t1
chr1.3 exon 73038561 73038676 73038561 ID=MS.gene91302.t1.exon2;Parent=MS.gene91302.t1
chr1.3 CDS 73038561 73038676 73038561 ID=cds.MS.gene91302.t1;Parent=MS.gene91302.t1
chr1.3 exon 73037770 73037970 73037770 ID=MS.gene91302.t1.exon3;Parent=MS.gene91302.t1
chr1.3 CDS 73037770 73037970 73037770 ID=cds.MS.gene91302.t1;Parent=MS.gene91302.t1
chr1.3 exon 73037540 73037644 73037540 ID=MS.gene91302.t1.exon4;Parent=MS.gene91302.t1
chr1.3 CDS 73037540 73037644 73037540 ID=cds.MS.gene91302.t1;Parent=MS.gene91302.t1
chr1.3 exon 73037380 73037442 73037380 ID=MS.gene91302.t1.exon5;Parent=MS.gene91302.t1
chr1.3 CDS 73037380 73037442 73037380 ID=cds.MS.gene91302.t1;Parent=MS.gene91302.t1
chr1.3 exon 73037114 73037225 73037114 ID=MS.gene91302.t1.exon6;Parent=MS.gene91302.t1
chr1.3 CDS 73037114 73037225 73037114 ID=cds.MS.gene91302.t1;Parent=MS.gene91302.t1
chr1.3 exon 73036474 73036535 73036474 ID=MS.gene91302.t1.exon7;Parent=MS.gene91302.t1
chr1.3 CDS 73036474 73036535 73036474 ID=cds.MS.gene91302.t1;Parent=MS.gene91302.t1
chr1.3 exon 73036183 73036371 73036183 ID=MS.gene91302.t1.exon8;Parent=MS.gene91302.t1
chr1.3 CDS 73036183 73036371 73036183 ID=cds.MS.gene91302.t1;Parent=MS.gene91302.t1
chr1.3 exon 73036022 73036099 73036022 ID=MS.gene91302.t1.exon9;Parent=MS.gene91302.t1
chr1.3 CDS 73036022 73036099 73036022 ID=cds.MS.gene91302.t1;Parent=MS.gene91302.t1
Gene Sequence

>MS.gene91302

ATGTCTTCTTCGCTCTCACCATCACTCTCTTCACCATTCATCCACGATTCTTCAACTACTCGCCATGGAACTAAGCTTCTTCCTTTTCCTCACGCCACTGCTACACGCAAACCGCGATGCTTCAAGTCCTTTTCTTTTAACTGCTCCCTCGACCGCATCCCCAAGCAGTTCAGACAGGAAAATCTCAAAGATGGATGTCAGTTTTCACTCTCTCTCTCTTTTCTATTCCATTTTTTCTAATTCTAATTTACTCTATTGGGTTATGTCTCGATTCGTATAGTGATTTCTGAGATAAATTAAATGAAAAAAAAAGCAACTTTTAATCCGGGTCTGAATTATTTTAGGGATTTTGTTTATGTGTGTTGCAAAACGAATTTGATTATGATGTTGTTATTAGTGCTTAATTTTATCATAATTTTCGTTGTTGCCTCCATCAATTTTATTGTGGAATTGATTTTTTGTTTATGGATTTATTAATTCAGTAGAATCCTATAGTTTACATCTGTTAAGTTTCAAAAGTAACAATTGGACTAGTATCCCCTTAAAACCAGTAGCAGATTTTGCTGAATTATGTAGATAAGATTATCGTCTCCTTGTGGAAATCAGTAGTACAGAAGATAAGATTAACTCCTCCTCTGGGCATCCTTGTACCTTAGATGAGTGGCGGGTGGAACTTGTCCTGTGTTGGGGTCGATAGTGATGTATGTCGTATGAGAGGGATTGTGCTAGGTCTTGCAGCGTCGTGGGGTGTGTGTGTGTGTGTGTATGTGTGTGGTGGGGGGTTGTCTGGCTTCTGTCTTCCTCCCCTTGTGAGTGCTTTAGTTGTCGGTGCAGTTTTTGGAACTTCGCTTGGCCCGTCTTTGTTTCCTATTTAGTTTATGTTGATGTTATTTTCTTGATGTTATTTTGTTGTAGCTTTGGCCTTTAGTTTTTAGTTTCGTAAAAAAGAAGTTCGTGAATTATCAGCATAAGTTGCAGAAAGGGAAAATAACGAAACATCATGAATTTTGCTTGTAAACACAATATAGGGCAGAGTTATGTGAAGTTTAGGCTAAACTAATCACACTTTCAGTGTTTCTAAGATGTTCAACGCGAACAAGGGGCATTAAACGTTAAAGTTTACTTAAGAAGAATTGGGAATGGGAATTGGGTAAATGTTATTATGTAAGGCTTGAAATTGGTGCACTGCAATTAATTTAGATGAGAAAATTAGGAAGGTAGAGGAAAACTAACCCAAATGATAAATATATTCAAACAAGTTATTTTTAAAGTTCAATTGAATAGTTTGAAACTTGGGTGCCTAGCCCTAATCTTGACATTTTATCTTATGTATCATATGCAGTGATGGACAATTACAAGAATGCACCGCAGTTTCTATATGGTCTTAATCCTTCGCAAATGGACATGTTCATAAATGCAGACAATCCTGTGCATCAGATGTCTGAAAGAGTTACAGAGGTTCTCATCATTTATATCCGGCTTAATTGCATGTTTGGTCCCTTATGTTTATTTTAGGTTTCAAGTTGGTCCTTTATGTTTTAAAAGTTTCAAGTTGGTCCCTTATGTTTTAAAAGTTTCAAGTTGGTTTAAAACGTTACTCACATTTGAATAAGTTAGTCCCTTCCGTCACTAGACCTTATAAAGATTTGGGTTAACAATGCGGGTGATGGAATTTAACTTATTTAGAAAATCAGTTTTAAAACATTTTTTTATTTTTTTTTGTTTTATTAAACTCAATATCATGTCAGGGAAGGGACTAACTTATTCCAACGTGAATAACATTTTGGATTAACTTGAAAACTTTAAAACGTAAGGGACCAACTTGAAACTTTTAAAACATAAGGGACCAACTTGAAACCTAAAATAAACATAAGGGATCAAGCATGCAATTAAGCCTTTATATCCTTTCAATATTTTGTTAAGTCACTAATATATTTTAGAAATTTGTCTAATTATTGATTGTGGAGTCAATGTTGCTAAGCACCCAAATTTTATCACCGCGTATTTAACTGTTCAGAAGTGTTCTTATAGTGTTAGTGATTTGACAGGAAAGCATTTCATCTGCCAAAAGTTATTTGGCTCATAGTGGGATGAGTAGTGTATCTAGCATGGATACTAATGCATCTTCAAGACACAGCATGAGTGTTAGTATGTACAGAGGAGGTAGGGGAACAGGAAGGCCTAGAAATGCTCCACCGGATTTGCCTTCTTTGCTCTTGGATTCTCGGATATGTTATCTTGGTATGCCGGTAAGTATCCTGATATGTTTTGTTTTTATCTCAATCTTGGTCCTTGATGATTTCATCTTTTTACTGCCTATGTATGTAAATATATTTTGTCGTCATCTTGATTTTCCCTTTTATGATTCGTACAGATTGTACCAGCCGTGACAGAACTTATTCTGGCTCAACTTATGTGGTTGGATTATGATAACCCTGCCAAACCTGTTTATTTATATATTAATTCGTCTGGGACTCAGGTAAGTGTTAAAGTCATTGTTCTAAAATTTCTCCTTGTAATGTATAATATGTGGTTATTTATATAAATGGTCTTTCTTTCCTCTGTTTCCGGATTAGAATGAGAAGAATGAGACCGTGGGATCAGAAACTGATGCTTATTCCATCGCTGATATGATTTCTGTAAGTTATCATGAATCACACACTCGTTTTACCCACATCGCAATGTTGTGTTTTGGTTTATCACTTTGAACTCACTGTAACTTGTACTCTTGCTAATATTTTTCCCCCTTTCAACCTACTCTTCCTAATATTTTTTTCCCCTTTCAACCTATAGTATATCAAATCTGATGTCTACACTGTGAATTTGGCCATGGCGTTTGGCCAAGCAGCAATGATTCTGTCTGTTGGAAAAAAGGGTTACCGTGCTGTACTGCCACATTCATCCAGTAAGTATCCTATCTGGGTAAACTTTTGAAAAATATTGCTTGATTGCTCTTGAATCTGAATACTGAATGATTTGTGGATCTGTGCTGTATTACATGAATGATTTGTACAATAGCTATGTACAAGGCTGAAGGAATCAAGCCCAAATGTTTAGGGATTAGTCTTAGAATCAGCTAAGGAAGCTATCAAATCAAATCACTTTCTCTACTAATTTGAACAATATTATAACAGTTTCTTACAATTATTTATCGTGTCTTTTTGGAACTACCATCCAATGATTCCTTCTAGGTTTTATAAATATGATTCATGAATATTTTTGGAGAAAGGACTAAAGTGTTCATTTCTGCATTGAGTGTTAATGTATAGGCTCCAAAGTGTTCATTTCAGTATTGCGTTTGAATTAGGGAATAGGGATATTTCTTCCGTTTCGGTCAGTTTTTTGTTTTTTTATTTTTTATAAAGTAGCAAGATAAATTATTGTATACATATTTTTATCTTTACATCGTCAGTGGAATGTAAGGATGCATGATTTTAATCATCGTTTTTTCTTACTGCGGGTTATAAATTTTTTCTATTTCAGCAAAAGTATTTCTCCCGAAAGTCCACAGATCAAGTGGTTCTGTTGCAGATATGTGGATTAAGGTATGCGAACCGTGTACATGTTTGCTGTCTTCTCTCACTGTACTGTCTCTATTATTGTTTTGGACATTCTATTTATTGATTATATTCGGGAAATGCATACAGGCAAAAGAGCTGGAGGCAAATTCTGAGTATTACATTGAGCTGTTGGCAAAAGGAACAGGGAAGTCAAAGGAAGAACTTGCTAAAGACGTCCAGAGGACTAGATATTTCCAACCACAGGATGCCATAGAATACGGACTCGCTGACAAAATAATGTATTCAATGGATGGGGAAAGTGCATATGAGAAGCGGGTAAGAAATATCATTGATATAAATCTTTATCTTCCATAATTATTTCATGCATTATATGTATTTATGATTACTTTCTTGATCAGAATTATGATGAAATACGTGCTCAAAGAGCACTGCGGAGAGGTGGTGGGAACCCTCAAGCGGCTCCTTCAGGACTTTAG

Protein sequence

>MS.gene91302.t1

MSSSLSPSLSSPFIHDSSTTRHGTKLLPFPHATATRKPRCFKSFSFNCSLDRIPKQFRQENLKDGLMDNYKNAPQFLYGLNPSQMDMFINADNPVHQMSERVTEESISSAKSYLAHSGMSSVSSMDTNASSRHSMSVSMYRGGRGTGRPRNAPPDLPSLLLDSRICYLGMPIVPAVTELILAQLMWLDYDNPAKPVYLYINSSGTQNEKNETVGSETDAYSIADMISYIKSDVYTVNLAMAFGQAAMILSVGKKGYRAVLPHSSTKVFLPKVHRSSGSVADMWIKAKELEANSEYYIELLAKGTGKSKEELAKDVQRTRYFQPQDAIEYGLADKIMYSMDGESAYEKRNYDEIRAQRALRRGGGNPQAAPSGL