Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99657.t1 | XP_013457334.1 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 6.30E-68 | 266.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99657.t1 | P42798 | 98.5 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.8e-70 | 264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99657.t1 | I3SJY8 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 4.5e-68 | 266.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene99657 | 0.805706 | 1.17E-49 | -1.69E-46 |
| MS.gene049340 | MS.gene99657 | 0.800343 | 1.51E-48 | -1.69E-46 |
| MS.gene049341 | MS.gene99657 | 0.827971 | 1.16E-54 | -1.69E-46 |
| MS.gene049441 | MS.gene99657 | 0.800111 | 1.68E-48 | -1.69E-46 |
| MS.gene049501 | MS.gene99657 | 0.806956 | 6.39E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene99657 | 0.827167 | 1.82E-54 | -1.69E-46 |
| MS.gene049825 | MS.gene99657 | 0.846048 | 2.77E-59 | -1.69E-46 |
| MS.gene049873 | MS.gene99657 | 0.854388 | 1.27E-61 | -1.69E-46 |
| MS.gene050277 | MS.gene99657 | 0.838586 | 2.63E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene99657 | 0.850453 | 1.68E-60 | -1.69E-46 |
| MS.gene050815 | MS.gene99657 | 0.81547 | 9.10E-52 | -1.69E-46 |
| MS.gene050916 | MS.gene99657 | 0.834761 | 2.49E-56 | -1.69E-46 |
| MS.gene051247 | MS.gene99657 | 0.813576 | 2.39E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene99657 | 0.859394 | 4.26E-63 | -1.69E-46 |
| MS.gene051330 | MS.gene99657 | 0.829234 | 5.77E-55 | -1.69E-46 |
| MS.gene05134 | MS.gene99657 | 0.81316 | 2.95E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene99657 | 0.841941 | 3.50E-58 | -1.69E-46 |
| MS.gene051719 | MS.gene99657 | 0.808104 | 3.65E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene99657 | 0.839806 | 1.27E-57 | -1.69E-46 |
| MS.gene051748 | MS.gene99657 | 0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene051791 | MS.gene99657 | 0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene99657 | 0.80637 | 8.50E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene99657 | 0.816714 | 4.80E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene99657 | 0.82307 | 1.69E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene99657 | 0.823537 | 1.31E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene99657 | 0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene052879 | MS.gene99657 | 0.806644 | 7.44E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene99657 | 0.880455 | 5.41E-70 | -1.69E-46 |
| MS.gene053122 | MS.gene99657 | 0.805107 | 1.57E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene99657 | 0.819501 | 1.12E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene99657 | 0.83654 | 8.81E-57 | -1.69E-46 |
| MS.gene055468 | MS.gene99657 | 0.838455 | 2.85E-57 | -1.69E-46 |
| MS.gene055512 | MS.gene99657 | 0.802073 | 6.67E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene99657 | 0.839582 | 1.45E-57 | -1.69E-46 |
| MS.gene055580 | MS.gene99657 | -0.866622 | 2.49E-65 | -1.69E-46 |
| MS.gene055778 | MS.gene99657 | 0.800584 | 1.35E-48 | -1.69E-46 |
| MS.gene055808 | MS.gene99657 | 0.863994 | 1.67E-64 | -1.69E-46 |
| MS.gene056043 | MS.gene99657 | -0.865642 | 5.09E-65 | -1.69E-46 |
| MS.gene056075 | MS.gene99657 | 0.8451 | 5.01E-59 | -1.69E-46 |
| MS.gene056091 | MS.gene99657 | 0.860303 | 2.27E-63 | -1.69E-46 |
| MS.gene056215 | MS.gene99657 | 0.834814 | 2.41E-56 | -1.69E-46 |
| MS.gene056368 | MS.gene99657 | 0.81771 | 2.86E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene99657 | 0.802368 | 5.80E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene99657 | 0.859851 | 3.11E-63 | -1.69E-46 |
| MS.gene056642 | MS.gene99657 | 0.820776 | 5.74E-53 | -1.69E-46 |
| MS.gene057140 | MS.gene99657 | 0.808681 | 2.75E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene99657 | 0.832252 | 1.05E-55 | -1.69E-46 |
| MS.gene058037 | MS.gene99657 | 0.817648 | 2.96E-52 | -1.69E-46 |
| MS.gene058084 | MS.gene99657 | 0.836827 | 7.45E-57 | -1.69E-46 |
| MS.gene058906 | MS.gene99657 | 0.859153 | 5.04E-63 | -1.69E-46 |
| MS.gene058908 | MS.gene99657 | 0.803765 | 2.98E-49 | -1.69E-46 |
| MS.gene058911 | MS.gene99657 | 0.809109 | 2.23E-50 | -1.69E-46 |
| MS.gene059151 | MS.gene99657 | 0.816919 | 4.31E-52 | -1.69E-46 |
| MS.gene05953 | MS.gene99657 | 0.802941 | 4.42E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene99657 | 0.853322 | 2.58E-61 | -1.69E-46 |
| MS.gene06001 | MS.gene99657 | 0.896449 | 3.65E-76 | -1.69E-46 |
| MS.gene060429 | MS.gene99657 | 0.915978 | 3.09E-85 | -1.69E-46 |
| MS.gene060586 | MS.gene99657 | 0.811331 | 7.39E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene99657 | 0.80271 | 4.93E-49 | -1.69E-46 |
| MS.gene060917 | MS.gene99657 | 0.840747 | 7.22E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99657.t1 | MTR_4g094598 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 5.74e-94 | 267 |
| MS.gene99657.t1 | MTR_1g105415 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 5.74e-94 | 267 |
| MS.gene99657.t1 | MTR_4g117470 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.82e-93 | 265 |
| MS.gene99657.t1 | MTR_8g101910 | 52.000 | 125 | 60 | 0 | 6 | 130 | 5 | 129 | 9.74e-46 | 145 |
| MS.gene99657.t1 | MTR_8g101910 | 49.474 | 95 | 48 | 0 | 6 | 100 | 5 | 99 | 9.43e-29 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99657.t1 | AT5G59850 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 4.89e-93 | 265 |
| MS.gene99657.t1 | AT1G07770 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 4.89e-93 | 265 |
| MS.gene99657.t1 | AT1G07770 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 4.89e-93 | 265 |
| MS.gene99657.t1 | AT1G07770 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 4.89e-93 | 265 |
| MS.gene99657.t1 | AT3G46040 | 96.923 | 130 | 4 | 0 | 1 | 130 | 1 | 130 | 1.11e-91 | 261 |
| MS.gene99657.t1 | AT2G39590 | 91.538 | 130 | 11 | 0 | 1 | 130 | 1 | 130 | 4.60e-87 | 249 |
| MS.gene99657.t1 | AT4G29430 | 54.400 | 125 | 57 | 0 | 6 | 130 | 5 | 129 | 1.51e-47 | 149 |
| MS.gene99657.t1 | AT2G19720 | 53.600 | 125 | 58 | 0 | 6 | 130 | 5 | 129 | 1.71e-45 | 144 |
Find 27 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATTATCAAATTCCTTA+TGG | 0.311584 | 1.4:-80989450 | MS.gene99657:CDS |
| TTGTGGTTGTAGGATACATT+GGG | 0.397768 | 1.4:-80989307 | MS.gene99657:intron |
| GACTACCTCTGCTGGTATCA+TGG | 0.414748 | 1.4:-80987870 | MS.gene99657:CDS |
| ACCACCAACATTCTTTCTCC+TGG | 0.414976 | 1.4:+80987835 | None:intergenic |
| GAAAGCGTCAAGTTATGATT+AGG | 0.452540 | 1.4:-80989484 | MS.gene99657:CDS |
| AATGTTGGTGGTAAAGTGTT+GGG | 0.506719 | 1.4:-80987824 | MS.gene99657:CDS |
| TTGAATATGTCGATGATCAC+AGG | 0.509301 | 1.4:-80989280 | MS.gene99657:CDS |
| CTTGTGGTTGTAGGATACAT+TGG | 0.518199 | 1.4:-80989308 | MS.gene99657:intron |
| AAAATTGTCGTCGAATTGAA+TGG | 0.519692 | 1.4:-80989251 | MS.gene99657:CDS |
| AGATTGAAGGATGGACTGCT+AGG | 0.524175 | 1.4:-80989175 | MS.gene99657:CDS |
| ATTGTCTTGACTACCTCTGC+TGG | 0.534592 | 1.4:-80987878 | MS.gene99657:CDS |
| GAATGTTGGTGGTAAAGTGT+TGG | 0.537027 | 1.4:-80987825 | MS.gene99657:CDS |
| TATGTCGATGATCACAGGTC+TGG | 0.547616 | 1.4:-80989275 | MS.gene99657:CDS |
| TCATGGATCATGAAGAGGCC+AGG | 0.549802 | 1.4:-80987853 | MS.gene99657:CDS |
| TTTAACAGAAAAGATGGTGA+GGG | 0.562591 | 1.4:-80989558 | None:intergenic |
| TAGGCTTCTTCCCTCAAGAC+AGG | 0.576488 | 1.4:-80989156 | MS.gene99657:intron |
| GCCAGGAGAAAGAATGTTGG+TGG | 0.584787 | 1.4:-80987836 | MS.gene99657:CDS |
| GTTGGTGTCAAAGAGATTGA+AGG | 0.610557 | 1.4:-80989188 | MS.gene99657:CDS |
| CTTATGGTCATGCAAAAGCA+TGG | 0.625786 | 1.4:-80989434 | MS.gene99657:intron |
| TGTGGTTGTAGGATACATTG+GGG | 0.634517 | 1.4:-80989306 | MS.gene99657:intron |
| ATGATCCATGATACCAGCAG+AGG | 0.644078 | 1.4:+80987865 | None:intergenic |
| TGGTATCATGGATCATGAAG+AGG | 0.653772 | 1.4:-80987858 | MS.gene99657:CDS |
| GAGGCCAGGAGAAAGAATGT+TGG | 0.655684 | 1.4:-80987839 | MS.gene99657:CDS |
| AATGGTAGATTGAACAAGTG+TGG | 0.659687 | 1.4:-80989233 | MS.gene99657:CDS |
| GTGTCAAAGAGATTGAAGGA+TGG | 0.661917 | 1.4:-80989184 | MS.gene99657:CDS |
| ATGTACAATGCTGAGAAACG+TGG | 0.686253 | 1.4:-80989506 | MS.gene99657:CDS |
| TTGACACCAACATCAAAACG+AGG | 0.729538 | 1.4:+80989200 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAATGTTAAAAGAT+GGG | + | chr1.4:80989257-80989276 | None:intergenic | 15.0% |
| !! | CTATAAAACAAACTTAAATA+AGG | + | chr1.4:80988599-80988618 | None:intergenic | 15.0% |
| !! | TAAACATTACAATTGAATAA+TGG | + | chr1.4:80989309-80989328 | None:intergenic | 15.0% |
| !! | TAAATGAAAATGTTAAAAGA+TGG | + | chr1.4:80989258-80989277 | None:intergenic | 15.0% |
| !! | AAAAAAAGCTAATAAAAGCT+TGG | + | chr1.4:80988433-80988452 | None:intergenic | 20.0% |
| !! | AAAAAAGCTAATAAAAGCTT+GGG | + | chr1.4:80988432-80988451 | None:intergenic | 20.0% |
| !! | ATATATGATAGTCAAATAGT+CGG | + | chr1.4:80989115-80989134 | None:intergenic | 20.0% |
| !! | ATTAGAAATGATTCATGATT+AGG | + | chr1.4:80989023-80989042 | None:intergenic | 20.0% |
| !! | ATTTATTGTTTGATTCATGT+AGG | - | chr1.4:80987964-80987983 | MS.gene99657:intron | 20.0% |
| !! | TGTTCTATTTCCATATAATA+AGG | + | chr1.4:80988757-80988776 | None:intergenic | 20.0% |
| !! | TTGTTTGTTTCCTTATTATA+TGG | - | chr1.4:80988744-80988763 | MS.gene99657:intron | 20.0% |
| !!! | CTTTCTAATTTATTTGCTTT+TGG | - | chr1.4:80988786-80988805 | MS.gene99657:intron | 20.0% |
| !!! | TCAAACTACTATCATTTTTA+TGG | + | chr1.4:80988271-80988290 | None:intergenic | 20.0% |
| !!! | TGATAGTTTAATTTACATGA+TGG | - | chr1.4:80988288-80988307 | MS.gene99657:intron | 20.0% |
| !!! | TTAGTAGACTTTTAAATCTT+GGG | - | chr1.4:80988861-80988880 | MS.gene99657:intron | 20.0% |
| ! | AAAATGTTAAAAGATGGGAT+GGG | + | chr1.4:80989252-80989271 | None:intergenic | 25.0% |
| ! | AATTGAATAATGGTTGCAAA+AGG | + | chr1.4:80989299-80989318 | None:intergenic | 25.0% |
| ! | AGTGATTATCAAATTCCTTA+TGG | - | chr1.4:80987906-80987925 | MS.gene99657:intron | 25.0% |
| ! | CCATTAAAGCATAATAAGAA+GGG | + | chr1.4:80989146-80989165 | None:intergenic | 25.0% |
| ! | CCTTCTTATTATGCTTTAAT+GGG | - | chr1.4:80989144-80989163 | MS.gene99657:intron | 25.0% |
| ! | CTTCTTATTATGCTTTAATG+GGG | - | chr1.4:80989145-80989164 | MS.gene99657:intron | 25.0% |
| ! | GATAATATTGTATACTCTTG+TGG | - | chr1.4:80988032-80988051 | MS.gene99657:intron | 25.0% |
| ! | TAAATTCAAACCGTTCTTTA+TGG | - | chr1.4:80989054-80989073 | MS.gene99657:intron | 25.0% |
| ! | TCAAATAAGTTAATCCAAAC+AGG | + | chr1.4:80988342-80988361 | None:intergenic | 25.0% |
| !! | GTTAGTAGACTTTTAAATCT+TGG | - | chr1.4:80988860-80988879 | MS.gene99657:intron | 25.0% |
| !!! | ATTTTAGCAACCAATAGTTA+GGG | + | chr1.4:80989442-80989461 | None:intergenic | 25.0% |
| !!! | CTAATAGGCTTTTAAAACTT+GGG | - | chr1.4:80988834-80988853 | MS.gene99657:intron | 25.0% |
| !!! | GAATTTGATAATCACTTTTG+AGG | + | chr1.4:80987902-80987921 | None:intergenic | 25.0% |
| AAAATTGTCGTCGAATTGAA+TGG | - | chr1.4:80988105-80988124 | MS.gene99657:intron | 30.0% | |
| ACCTTTATATTAGGCCTAAT+AGG | - | chr1.4:80988819-80988838 | MS.gene99657:intron | 30.0% | |
| AGAACTTATGAAATCAGCTA+TGG | - | chr1.4:80988399-80988418 | MS.gene99657:intron | 30.0% | |
| CAAATGTTTCACTCACTTAA+GGG | - | chr1.4:80988976-80988995 | MS.gene99657:intron | 30.0% | |
| CAGATTTACAAGACAAAACT+CGG | + | chr1.4:80988238-80988257 | None:intergenic | 30.0% | |
| CCCATTAAAGCATAATAAGA+AGG | + | chr1.4:80989147-80989166 | None:intergenic | 30.0% | |
| CCCTTCTTATTATGCTTTAA+TGG | - | chr1.4:80989143-80989162 | MS.gene99657:intron | 30.0% | |
| CTGACTTATGCTTCATATAT+TGG | - | chr1.4:80988929-80988948 | MS.gene99657:intron | 30.0% | |
| CTTAAGTGAGTGAAACATTT+GGG | + | chr1.4:80988977-80988996 | None:intergenic | 30.0% | |
| GAAAATGTTAAAAGATGGGA+TGG | + | chr1.4:80989253-80989272 | None:intergenic | 30.0% | |
| GTTTCATTTGATCTTTCTTG+TGG | - | chr1.4:80989415-80989434 | MS.gene99657:intron | 30.0% | |
| TCCTGGAATACCTTTATATT+AGG | - | chr1.4:80988810-80988829 | MS.gene99657:intron | 30.0% | |
| TGTTTGATTCATGTAGGATT+AGG | - | chr1.4:80987970-80987989 | MS.gene99657:intron | 30.0% | |
| TTGCTAAAATCATGCAGTTT+GGG | - | chr1.4:80989452-80989471 | MS.gene99657:CDS | 30.0% | |
| ! | ATCCATTGACATAAGTTTTG+TGG | - | chr1.4:80988366-80988385 | MS.gene99657:intron | 30.0% |
| ! | TAGACTTTTAAATCTTGGGT+TGG | - | chr1.4:80988865-80988884 | MS.gene99657:intron | 30.0% |
| !! | GATTTTAGCAACCAATAGTT+AGG | + | chr1.4:80989443-80989462 | None:intergenic | 30.0% |
| !! | TCCATTGACATAAGTTTTGT+GGG | - | chr1.4:80988367-80988386 | MS.gene99657:intron | 30.0% |
| !! | TTGATAATCACTTTTGAGGA+TGG | + | chr1.4:80987898-80987917 | None:intergenic | 30.0% |
| !! | TTTAAATCTTGGGTTGGAAT+TGG | - | chr1.4:80988871-80988890 | MS.gene99657:intron | 30.0% |
| !!! | ATTTATTTGCTTTTGGTTCC+TGG | - | chr1.4:80988793-80988812 | MS.gene99657:intron | 30.0% |
| !!! | CCAAGTTTTAAAAGCCTATT+AGG | + | chr1.4:80988836-80988855 | None:intergenic | 30.0% |
| !!! | CCTAATAGGCTTTTAAAACT+TGG | - | chr1.4:80988833-80988852 | MS.gene99657:intron | 30.0% |
| AATGGTAGATTGAACAAGTG+TGG | - | chr1.4:80988123-80988142 | MS.gene99657:intron | 35.0% | |
| ACAAGCAACATAACATTCGA+TGG | + | chr1.4:80989393-80989412 | None:intergenic | 35.0% | |
| ATACACCCAACCATAAAGAA+CGG | + | chr1.4:80989067-80989086 | None:intergenic | 35.0% | |
| CCAAATGTTTCACTCACTTA+AGG | - | chr1.4:80988975-80988994 | MS.gene99657:intron | 35.0% | |
| CCTTAAGTGAGTGAAACATT+TGG | + | chr1.4:80988978-80988997 | None:intergenic | 35.0% | |
| CTTATTATGCTTTAATGGGG+TGG | - | chr1.4:80989148-80989167 | MS.gene99657:intron | 35.0% | |
| GCCTATTAGGCCTAATATAA+AGG | + | chr1.4:80988823-80988842 | None:intergenic | 35.0% | |
| GTTGCTAAAATCATGCAGTT+TGG | - | chr1.4:80989451-80989470 | MS.gene99657:CDS | 35.0% | |
| TATAGTTCCTAACTATCGTG+TGG | - | chr1.4:80988614-80988633 | MS.gene99657:intron | 35.0% | |
| TCAAACCGTTCTTTATGGTT+GGG | - | chr1.4:80989059-80989078 | MS.gene99657:intron | 35.0% | |
| TCCCACAAAACTTATGTCAA+TGG | + | chr1.4:80988371-80988390 | None:intergenic | 35.0% | |
| TTCAAACCGTTCTTTATGGT+TGG | - | chr1.4:80989058-80989077 | MS.gene99657:intron | 35.0% | |
| TTGAATATGTCGATGATCAC+AGG | - | chr1.4:80988076-80988095 | MS.gene99657:intron | 35.0% | |
| TTGTATACTCTTGTGGTTGT+AGG | - | chr1.4:80988039-80988058 | MS.gene99657:intron | 35.0% | |
| TTGTGGTTGTAGGATACATT+GGG | - | chr1.4:80988049-80988068 | MS.gene99657:intron | 35.0% | |
| ! | CTTGATCTCGTCATTCTTTT+GGG | - | chr1.4:80988670-80988689 | MS.gene99657:intron | 35.0% |
| ! | TCTTGATCTCGTCATTCTTT+TGG | - | chr1.4:80988669-80988688 | MS.gene99657:intron | 35.0% |
| !! | AATGTTGGTGGTAAAGTGTT+GGG | - | chr1.4:80989532-80989551 | MS.gene99657:CDS | 35.0% |
| !! | ATAAGTTTTGTGGGACTGTT+TGG | - | chr1.4:80988376-80988395 | MS.gene99657:intron | 35.0% |
| !! | ATTAGTCCTCGTTTTGATGT+TGG | - | chr1.4:80988150-80988169 | MS.gene99657:intron | 35.0% |
| !! | GAAAGCGTCAAGTTATGATT+AGG | - | chr1.4:80987872-80987891 | MS.gene99657:CDS | 35.0% |
| !! | GCCTAATATAAAGGTATTCC+AGG | + | chr1.4:80988814-80988833 | None:intergenic | 35.0% |
| !!! | TAGGCTTTTAAAACTTGGGT+TGG | - | chr1.4:80988838-80988857 | MS.gene99657:intron | 35.0% |
| AATAGTCGGTATGCATAGAG+TGG | + | chr1.4:80989101-80989120 | None:intergenic | 40.0% | |
| AGAATGACCACACGATAGTT+AGG | + | chr1.4:80988624-80988643 | None:intergenic | 40.0% | |
| AGGAGTTAACCAGAACAATC+CGG | - | chr1.4:80988896-80988915 | MS.gene99657:intron | 40.0% | |
| ATAGTCGGTATGCATAGAGT+GGG | + | chr1.4:80989100-80989119 | None:intergenic | 40.0% | |
| ATGATATGTGCTTCTGCTAC+AGG | - | chr1.4:80988573-80988592 | MS.gene99657:intron | 40.0% | |
| ATGTACAATGCTGAGAAACG+TGG | - | chr1.4:80987850-80987869 | MS.gene99657:CDS | 40.0% | |
| CACTCACTTAAGGGACTATT+TGG | - | chr1.4:80988985-80989004 | MS.gene99657:intron | 40.0% | |
| CTGAAGTTGCTATCATCATC+TGG | - | chr1.4:80989363-80989382 | MS.gene99657:intron | 40.0% | |
| CTTATGGTCATGCAAAAGCA+TGG | - | chr1.4:80987922-80987941 | MS.gene99657:intron | 40.0% | |
| CTTGTGGTTGTAGGATACAT+TGG | - | chr1.4:80988048-80988067 | MS.gene99657:intron | 40.0% | |
| GGTGGACGTAGAATATTCAT+TGG | - | chr1.4:80989166-80989185 | MS.gene99657:CDS | 40.0% | |
| GTGTCAAAGAGATTGAAGGA+TGG | - | chr1.4:80988172-80988191 | MS.gene99657:intron | 40.0% | |
| TGGTATCATGGATCATGAAG+AGG | - | chr1.4:80989498-80989517 | MS.gene99657:CDS | 40.0% | |
| TGTGGTTGTAGGATACATTG+GGG | - | chr1.4:80988050-80988069 | MS.gene99657:intron | 40.0% | |
| TTCTTGTGGTCCCTAACTAT+TGG | - | chr1.4:80989429-80989448 | MS.gene99657:intron | 40.0% | |
| TTGACACCAACATCAAAACG+AGG | + | chr1.4:80988159-80988178 | None:intergenic | 40.0% | |
| ! | CATGCTTTTGCATGACCATA+AGG | + | chr1.4:80987924-80987943 | None:intergenic | 40.0% |
| ! | TCATGCAAAAGCATGGTATG+TGG | - | chr1.4:80987929-80987948 | MS.gene99657:intron | 40.0% |
| !! | GAATGTTGGTGGTAAAGTGT+TGG | - | chr1.4:80989531-80989550 | MS.gene99657:CDS | 40.0% |
| !! | GTAGGATTAGGCTTTGTTAC+TGG | - | chr1.4:80987982-80988001 | MS.gene99657:intron | 40.0% |
| !! | GTTGGTGTCAAAGAGATTGA+AGG | - | chr1.4:80988168-80988187 | MS.gene99657:intron | 40.0% |
| !! | TTTTAGCTGACCTGTCTTGA+GGG | + | chr1.4:80988213-80988232 | None:intergenic | 40.0% |
| !!! | TTTTTAGCTGACCTGTCTTG+AGG | + | chr1.4:80988214-80988233 | None:intergenic | 40.0% |
| ACCACCAACATTCTTTCTCC+TGG | + | chr1.4:80989524-80989543 | None:intergenic | 45.0% | |
| AGTGCACAATATGCGTCTCA+GGG | - | chr1.4:80988316-80988335 | MS.gene99657:intron | 45.0% | |
| ATGATCCATGATACCAGCAG+AGG | + | chr1.4:80989494-80989513 | None:intergenic | 45.0% | |
| ATTGTCTTGACTACCTCTGC+TGG | - | chr1.4:80989478-80989497 | MS.gene99657:CDS | 45.0% | |
| TAGTGCACAATATGCGTCTC+AGG | - | chr1.4:80988315-80988334 | MS.gene99657:intron | 45.0% | |
| TATGTCGATGATCACAGGTC+TGG | - | chr1.4:80988081-80988100 | MS.gene99657:intron | 45.0% | |
| TCAAGACTCCAACGTCAATG+TGG | + | chr1.4:80988655-80988674 | None:intergenic | 45.0% | |
| ! | GCAAAAGCATGGTATGTGGT+TGG | - | chr1.4:80987933-80987952 | MS.gene99657:intron | 45.0% |
| !! | AGATTGAAGGATGGACTGCT+AGG | - | chr1.4:80988181-80988200 | MS.gene99657:intron | 45.0% |
| !! | ATAAGTCAGAGAAGCACTGC+CGG | + | chr1.4:80988918-80988937 | None:intergenic | 45.0% |
| !! | ATCTTGGGTTGGAATTGGAG+AGG | - | chr1.4:80988876-80988895 | MS.gene99657:intron | 45.0% |
| GACTACCTCTGCTGGTATCA+TGG | - | chr1.4:80989486-80989505 | MS.gene99657:CDS | 50.0% | |
| GAGGCCAGGAGAAAGAATGT+TGG | - | chr1.4:80989517-80989536 | MS.gene99657:CDS | 50.0% | |
| GCCAGGAGAAAGAATGTTGG+TGG | - | chr1.4:80989520-80989539 | MS.gene99657:CDS | 50.0% | |
| TAGGCTTCTTCCCTCAAGAC+AGG | - | chr1.4:80988200-80988219 | MS.gene99657:intron | 50.0% | |
| TCATGGATCATGAAGAGGCC+AGG | - | chr1.4:80989503-80989522 | MS.gene99657:CDS | 50.0% | |
| TTTGCGCACCACATTGACGT+TGG | - | chr1.4:80988644-80988663 | MS.gene99657:intron | 50.0% | |
| TTTGGGCACCACATTGACGT+TGG | - | chr1.4:80988687-80988706 | MS.gene99657:intron | 50.0% | |
| TATGCGTCTCAGGGCCTGTT+TGG | - | chr1.4:80988325-80988344 | MS.gene99657:intron | 55.0% | |
| !! | GAAGCACTGCCGGATTGTTC+TGG | + | chr1.4:80988908-80988927 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 80987811 | 80989567 | 80987811 | ID=MS.gene99657 |
| chr1.4 | mRNA | 80987811 | 80989567 | 80987811 | ID=MS.gene99657.t1;Parent=MS.gene99657 |
| chr1.4 | exon | 80989435 | 80989567 | 80989435 | ID=MS.gene99657.t1.exon1;Parent=MS.gene99657.t1 |
| chr1.4 | CDS | 80989435 | 80989567 | 80989435 | ID=cds.MS.gene99657.t1;Parent=MS.gene99657.t1 |
| chr1.4 | exon | 80989157 | 80989317 | 80989157 | ID=MS.gene99657.t1.exon2;Parent=MS.gene99657.t1 |
| chr1.4 | CDS | 80989157 | 80989317 | 80989157 | ID=cds.MS.gene99657.t1;Parent=MS.gene99657.t1 |
| chr1.4 | exon | 80987811 | 80987909 | 80987811 | ID=MS.gene99657.t1.exon3;Parent=MS.gene99657.t1 |
| chr1.4 | CDS | 80987811 | 80987909 | 80987811 | ID=cds.MS.gene99657.t1;Parent=MS.gene99657.t1 |
| Gene Sequence |
| Protein sequence |
