AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048597.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048597.01.T01 MTR_7g069540 92.066 605 46 2 1 603 1 605 0.0 1139
MsG0080048597.01.T01 MTR_7g069500 91.874 603 21 2 1 603 1 575 0.0 1112
MsG0080048597.01.T01 MTR_4g017200 85.832 607 82 3 1 603 1 607 0.0 1071
MsG0080048597.01.T01 MTR_5g046610 85.502 607 84 3 1 603 1 607 0.0 1068
MsG0080048597.01.T01 MTR_2g015560 82.155 566 101 0 38 603 17 582 0.0 987
MsG0080048597.01.T01 MTR_2g009330 68.866 591 178 1 10 600 25 609 0.0 878
MsG0080048597.01.T01 MTR_5g046620 50.622 241 42 5 233 472 1 165 1.02e-64 209
MsG0080048597.01.T01 MTR_3g099190 23.723 548 359 20 19 531 47 570 1.22e-17 87.0
MsG0080048597.01.T01 MTR_1g011530 46.667 75 37 1 349 423 31 102 2.99e-16 75.1
MsG0080048597.01.T01 MTR_2g013120 22.426 544 357 17 27 531 57 574 1.27e-15 80.9
MsG0080048597.01.T01 MTR_2g027220 22.842 556 353 18 47 558 67 590 2.29e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048597.01.T01 AT5G54960 84.236 609 88 3 1 603 1 607 0.0 1072
MsG0080048597.01.T01 AT4G33070 84.893 609 84 2 1 603 1 607 0.0 1071
MsG0080048597.01.T01 AT5G01320 83.444 604 98 2 1 603 1 603 0.0 1055
MsG0080048597.01.T01 AT5G01330 82.550 596 100 1 8 603 1 592 0.0 1028
MsG0080048597.01.T01 AT5G17380 24.351 501 309 18 47 509 18 486 1.07e-17 87.0
MsG0080048597.01.T01 AT3G48560 22.612 513 343 15 47 531 103 589 1.82e-13 73.9

Find 195 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGGTGATGGAAGCTTTC+AGG 0.099113 contig366end:-13150 MsG0080048597.01.T01:intron
CCCATTTCATTGGAACTTAT+TGG 0.122987 contig366end:-13790 MsG0080048597.01.T01:CDS
CCATTTCATTGGAACTTATT+GGG 0.218907 contig366end:-13789 MsG0080048597.01.T01:CDS
CTAATATACTTTGCTGCTTC+AGG 0.223823 contig366end:-12391 MsG0080048597.01.T01:three_prime_UTR
GGACCCAATTCTAATGATTA+TGG 0.232316 contig366end:-15532 MsG0080048597.01.T01:CDS
GCATCTTTAGTTAGTTAATT+TGG 0.242227 contig366end:+12223 None:intergenic
TACTTGGGAGCGAGTGAAAA+AGG 0.254142 contig366end:+14381 None:intergenic
AGGGGTTATTATATACTAAA+AGG 0.265507 contig366end:+16092 None:intergenic
AAACATAAGCTATCTTTCTT+TGG 0.266263 contig366end:+12707 None:intergenic
TCTGAAGTTTACTGAGGATT+TGG 0.266713 contig366end:+12599 None:intergenic
GTCTATTGTTGTTACATTGC+TGG 0.266809 contig366end:-12572 MsG0080048597.01.T01:three_prime_UTR
TGTATCCTCCGTTGTTTATC+AGG 0.267154 contig366end:+12976 None:intergenic
CTGAAGTTTACTGAGGATTT+GGG 0.267884 contig366end:+12600 None:intergenic
TTTGATGGATATTTAAAGTA+TGG 0.270139 contig366end:+16003 None:intergenic
TTAACTCTCAAAGGTTCTTT+TGG 0.273563 contig366end:+13473 None:intergenic
CCCAATAAGTTCCAATGAAA+TGG 0.289567 contig366end:+13789 None:intergenic
ATTCAGTCACTTGAGATAAA+TGG 0.298734 contig366end:-12436 MsG0080048597.01.T01:three_prime_UTR
GATCGGGTTGTGGTTGCTAA+TGG 0.314935 contig366end:-13626 MsG0080048597.01.T01:CDS
CGGACAATGGCATATCTAAA+AGG 0.316865 contig366end:+12520 None:intergenic
GTGTTGTTACTTTCACTGTT+GGG 0.331580 contig366end:-15624 MsG0080048597.01.T01:CDS
TTTGTGGTTTAACGTGGAAA+TGG 0.344615 contig366end:+16057 None:intergenic
ACATACATAATTAGTGAGTT+TGG 0.345087 contig366end:+12191 None:intergenic
CAAATGCAATATGGTTCAAT+TGG 0.346194 contig366end:-13236 MsG0080048597.01.T01:CDS
AGGATTCTTCATCATACTAT+TGG 0.352361 contig366end:-15502 MsG0080048597.01.T01:CDS
AGTGTTCTTAATGCTATTGC+TGG 0.356020 contig366end:-15595 MsG0080048597.01.T01:CDS
GTTGCTAATGGACCTGCATT+TGG 0.356868 contig366end:-13614 MsG0080048597.01.T01:CDS
AACAAAATGTCCACAATGTT+AGG 0.362479 contig366end:-15949 MsG0080048597.01.T01:exon
AGTCCCATAATCATTAGAAT+TGG 0.362617 contig366end:+15528 None:intergenic
CAAGCAATCACTCGCTTCTC+GGG 0.364950 contig366end:+13173 None:intergenic
TATGAGTTTCAAATGCAATA+TGG 0.365373 contig366end:-13245 MsG0080048597.01.T01:CDS
ATGAAATGGGGATGGTGCTC+AGG 0.369145 contig366end:+13803 None:intergenic
CATGAAACGACGTCGTTGTT+TGG 0.370477 contig366end:+15904 None:intergenic
CAGCCAATGCTTATATAAAC+AGG 0.374707 contig366end:+14450 None:intergenic
GCTGATGCATACTTGTTTGC+CGG 0.375814 contig366end:-13725 MsG0080048597.01.T01:CDS
GACGCTTCGCAAGTGCCTTT+AGG 0.385948 contig366end:+13570 None:intergenic
CAGTTCTTGATAACATTGTA+TGG 0.391023 contig366end:+12927 None:intergenic
CCAATAAGTTCCAATGAAAT+GGG 0.391316 contig366end:+13790 None:intergenic
TTGCCGCTTATTTGTATTGT+TGG 0.393601 contig366end:-15556 MsG0080048597.01.T01:CDS
GAGCACCATCCCCATTTCAT+TGG 0.394834 contig366end:-13800 MsG0080048597.01.T01:CDS
GCAAGCAATCACTCGCTTCT+CGG 0.396937 contig366end:+13172 None:intergenic
GAAGCAATTGCCACAGCAAC+AGG 0.397655 contig366end:-12731 MsG0080048597.01.T01:CDS
CTAATGATTATGGGACTAGT+AGG 0.404499 contig366end:-15522 MsG0080048597.01.T01:CDS
ACCGACGTCTTCTCCGTTCC+CGG 0.411535 contig366end:-15775 MsG0080048597.01.T01:CDS
TTTAATGACTACAGCTCTGT+TGG 0.425890 contig366end:-13695 MsG0080048597.01.T01:CDS
GGAAATGGGAAGAGACTAAG+AGG 0.431478 contig366end:+16072 None:intergenic
GGGGTTATTATATACTAAAA+GGG 0.433558 contig366end:+16093 None:intergenic
CAGGAGGCGATCGCGGTGGC+TGG 0.435574 contig366end:+15850 None:intergenic
GACCCAATTCTAATGATTAT+GGG 0.436897 contig366end:-15531 MsG0080048597.01.T01:CDS
TTGTGGTTTAACGTGGAAAT+GGG 0.442454 contig366end:+16058 None:intergenic
TGTGTTGTTACTTTCACTGT+TGG 0.449760 contig366end:-15625 MsG0080048597.01.T01:CDS
CATACAATGTTATCAAGAAC+TGG 0.450936 contig366end:-12926 MsG0080048597.01.T01:CDS
CTCAACTCCTGACTAAAATC+AGG 0.453988 contig366end:+15475 None:intergenic
AGGCGATCGCGGTGGCTGGT+TGG 0.460812 contig366end:+15854 None:intergenic
GTTGTTTATCAGGAAGATGA+TGG 0.461963 contig366end:+12986 None:intergenic
GTCCCATAATCATTAGAATT+GGG 0.462038 contig366end:+15529 None:intergenic
ATCAAAATGCATCCAAATGC+AGG 0.464273 contig366end:+13602 None:intergenic
CATTGAAGTGATTGTTCACA+AGG 0.466013 contig366end:-12684 MsG0080048597.01.T01:CDS
AATTTGGTCATCAAACCGTT+TGG 0.472335 contig366end:+12239 None:intergenic
CAATCATTGTGCAGCCCGAT+CGG 0.474852 contig366end:-13643 MsG0080048597.01.T01:CDS
TGGTCTGTTGGTGCAACTCT+TGG 0.476946 contig366end:-13212 MsG0080048597.01.T01:CDS
CATTTCATTGGAACTTATTG+GGG 0.478426 contig366end:-13788 MsG0080048597.01.T01:CDS
TGTTGTTACTTTCACTGTTG+GGG 0.483644 contig366end:-15623 MsG0080048597.01.T01:CDS
TTTGATGAAGGATTTCCTAA+AGG 0.483996 contig366end:-13585 MsG0080048597.01.T01:CDS
CCGCTTATTTGTATTGTTGG+TGG 0.484728 contig366end:-15553 MsG0080048597.01.T01:CDS
TTGAAATTGCCTGAGGGATG+TGG 0.486372 contig366end:-13362 MsG0080048597.01.T01:CDS
TGCAATATGGTTCAATTGGA+TGG 0.486831 contig366end:-13232 MsG0080048597.01.T01:CDS
TTGGGACCACCTACTAGTAC+AGG 0.490734 contig366end:+13920 None:intergenic
TTAATGACTACAGCTCTGTT+GGG 0.491232 contig366end:-13694 MsG0080048597.01.T01:CDS
ACAACATCTGTTGTATATGT+TGG 0.492054 contig366end:+13441 None:intergenic
GACAGGATCACGACTGAAAG+TGG 0.492188 contig366end:+14404 None:intergenic
CGACCATCTCGTCAATGAAC+CGG 0.492546 contig366end:-15731 MsG0080048597.01.T01:CDS
AATCATTGTGCAGCCCGATC+GGG 0.492725 contig366end:-13642 MsG0080048597.01.T01:CDS
ACAGCTGTGATTGCTGAGAC+AGG 0.499666 contig366end:-13410 MsG0080048597.01.T01:CDS
ATCGCGGTGGCTGGTTGGAT+CGG 0.502733 contig366end:+15859 None:intergenic
AGCTGTGATTGCTGAGACAG+GGG 0.505266 contig366end:-13408 MsG0080048597.01.T01:CDS
GCAGTAAAACCTGTACTAGT+AGG 0.506078 contig366end:-13929 MsG0080048597.01.T01:CDS
ATTGAGGTTGAAATTCATGA+TGG 0.507826 contig366end:-12951 MsG0080048597.01.T01:CDS
AGCATTGGCTGTAACTTGCC+TGG 0.508186 contig366end:-14438 MsG0080048597.01.T01:CDS
AGACGTCGGTGACGCCGACT+TGG 0.509266 contig366end:+15788 None:intergenic
CATAGGATATTTGTCCCAGA+TGG 0.511574 contig366end:-13515 MsG0080048597.01.T01:CDS
GCTATTGGCAGCAGAAACTC+TGG 0.513104 contig366end:+12628 None:intergenic
TGCTGTAACGAGCTGAATGC+AGG 0.513314 contig366end:-15691 MsG0080048597.01.T01:CDS
TGTGCAGCCCGATCGGGTTG+TGG 0.514001 contig366end:-13636 MsG0080048597.01.T01:CDS
CGAGATGGTCGAGGAGGGTG+AGG 0.514495 contig366end:+15743 None:intergenic
GGTTCAATTGGATGGTCTGT+TGG 0.514958 contig366end:-13224 MsG0080048597.01.T01:CDS
GGGACCATTCCTTTAGCTGA+TGG 0.515461 contig366end:+13824 None:intergenic
TTAGCAACCACAACCCGATC+GGG 0.517431 contig366end:+13629 None:intergenic
AAGCCTGTTTATATAAGCAT+TGG 0.517974 contig366end:-14453 MsG0080048597.01.T01:CDS
GAGGGTGAGGTTGAAGTCGC+CGG 0.518981 contig366end:+15756 None:intergenic
AACATAACATTAACTCTCAA+AGG 0.524430 contig366end:+13464 None:intergenic
TTGCTGAGACAGGGGACTCA+TGG 0.524993 contig366end:-13400 MsG0080048597.01.T01:CDS
TTATTGGGGTGCTGTGAGTA+CGG 0.525149 contig366end:-13774 MsG0080048597.01.T01:CDS
CCATCAATAAAAGTAAATTC+CGG 0.529435 contig366end:+12500 None:intergenic
GCTGTGATGCCATCAGCTAA+AGG 0.529652 contig366end:-13833 MsG0080048597.01.T01:CDS
GGACTAGTCGGCGTGCGAGA+TGG 0.529848 contig366end:+15809 None:intergenic
GTTTAGTTTGTGGTTTAACG+TGG 0.531113 contig366end:+16051 None:intergenic
GAGGTTGAAGTCGCCGGGAA+CGG 0.536503 contig366end:+15762 None:intergenic
AACACTTACCCACATCCCTC+AGG 0.537513 contig366end:+13353 None:intergenic
TTTCTTTGGTCCTGTTGCTG+TGG 0.540855 contig366end:+12721 None:intergenic
CATCTGGGACAAATATCCTA+TGG 0.541696 contig366end:+13516 None:intergenic
ATAGTGATGGAATGGAAAGT+TGG 0.544516 contig366end:+16137 None:intergenic
TATGCTCGGTCACGTGGTGT+CGG 0.546337 contig366end:-15652 MsG0080048597.01.T01:CDS
AAGCAAAGAGCTGCTTGAGT+GGG 0.547778 contig366end:-12654 MsG0080048597.01.T01:CDS
CAAGCAAAGAGCTGCTTGAG+TGG 0.547979 contig366end:-12655 MsG0080048597.01.T01:CDS
TTGATGAAAAGTTTAGTTTG+TGG 0.548420 contig366end:+16041 None:intergenic
GTAAGACAGTGGGAGGTACA+TGG 0.550366 contig366end:+16165 None:intergenic
GTGATTGCTTGCATTGGTGA+TGG 0.552907 contig366end:-13161 MsG0080048597.01.T01:CDS
GCGGCCGAGTGTAGCGTCGC+AGG 0.553256 contig366end:+15831 None:intergenic
ATAGGCTGTGGTGAATAACT+TGG 0.556113 contig366end:-14529 MsG0080048597.01.T01:intron
AGTTGGTAAGAGTAAGACAG+TGG 0.558764 contig366end:+16154 None:intergenic
GCCTCCTGCGACGCTACACT+CGG 0.559561 contig366end:-15835 MsG0080048597.01.T01:CDS
ACTTCTTCTCAAGAAAGAGA+AGG 0.560019 contig366end:-13666 MsG0080048597.01.T01:CDS
AGGGTGAGGTTGAAGTCGCC+GGG 0.560296 contig366end:+15757 None:intergenic
TGCTTTACAGGTAACTGCAC+AGG 0.560389 contig366end:-13042 MsG0080048597.01.T01:intron
TGAAGTTTACTGAGGATTTG+GGG 0.560721 contig366end:+12601 None:intergenic
TTGCGATATAGTTCTATACA+TGG 0.563941 contig366end:-12138 MsG0080048597.01.T01:three_prime_UTR
GAAATGAGATAGTGATGGAA+TGG 0.565338 contig366end:+16129 None:intergenic
TGAAATGGGGATGGTGCTCA+GGG 0.568384 contig366end:+13804 None:intergenic
ATTAGCAACCACAACCCGAT+CGG 0.569214 contig366end:+13628 None:intergenic
GCCGAGTGTAGCGTCGCAGG+AGG 0.570351 contig366end:+15834 None:intergenic
ATTGAGTAACCACATGGGGT+TGG 0.573467 contig366end:-13990 MsG0080048597.01.T01:CDS
CTGCTTATGAAAATTACCAT+AGG 0.576792 contig366end:-13532 MsG0080048597.01.T01:CDS
GTTGGTAAGAGTAAGACAGT+GGG 0.577661 contig366end:+16155 None:intergenic
GCTCCGGTTCATTGACGAGA+TGG 0.581139 contig366end:+15728 None:intergenic
TAAAAGTAAATTCCGGACAA+TGG 0.581428 contig366end:+12507 None:intergenic
GATGCAATTCACAATGGTGA+AGG 0.582372 contig366end:-12885 MsG0080048597.01.T01:CDS
GACGGTTATGCTCGGTCACG+TGG 0.584252 contig366end:-15658 MsG0080048597.01.T01:CDS
GGGTTATTATATACTAAAAG+GGG 0.584993 contig366end:+16094 None:intergenic
AGACACTGTTACTTAGTCTC+CGG 0.585070 contig366end:-12319 MsG0080048597.01.T01:three_prime_UTR
TACATGGGCTGTGGCCATGT+GGG 0.585082 contig366end:-12122 MsG0080048597.01.T01:three_prime_UTR
CAGCTGTGATTGCTGAGACA+GGG 0.585307 contig366end:-13409 MsG0080048597.01.T01:CDS
GTCGAACTAGCTGATGCAAG+TGG 0.587023 contig366end:-13866 MsG0080048597.01.T01:CDS
AAGCGAGTGATTGCTTGCAT+TGG 0.587132 contig366end:-13167 MsG0080048597.01.T01:CDS
TCACGACTGAAAGTGGGATG+AGG 0.587384 contig366end:+14411 None:intergenic
ATCAAGAACTGGAATTACAC+TGG 0.587582 contig366end:-12915 MsG0080048597.01.T01:CDS
ATCTAAAGATCCTAACATTG+TGG 0.588263 contig366end:+15939 None:intergenic
CTAGTCGGCGTGCGAGATGG+CGG 0.592292 contig366end:+15812 None:intergenic
ATGCGGCTGACGGTTATGCT+CGG 0.592533 contig366end:-15666 MsG0080048597.01.T01:CDS
AAAGTGGGATGAGGAATACC+AGG 0.593405 contig366end:+14420 None:intergenic
CAACCGATGAGGTTCAGCTC+CGG 0.593930 contig366end:+15712 None:intergenic
CGAGCTGAATGCAGGTTATG+CGG 0.594358 contig366end:-15683 MsG0080048597.01.T01:CDS
GAACCGGAGCTGAACCTCAT+CGG 0.594651 contig366end:-15715 MsG0080048597.01.T01:CDS
ATACATGGGCTGTGGCCATG+TGG 0.597878 contig366end:-12123 MsG0080048597.01.T01:three_prime_UTR
TTGTAGATTGAGTAACCACA+TGG 0.603932 contig366end:-13996 MsG0080048597.01.T01:intron
TCCTCAGTAAACTTCAGAGT+CGG 0.605135 contig366end:-12594 MsG0080048597.01.T01:exon
ACAATGGTGAAGGAAAATGT+TGG 0.606866 contig366end:-12875 MsG0080048597.01.T01:CDS
GTTCATTGACGAGATGGTCG+AGG 0.607447 contig366end:+15734 None:intergenic
ACTTGTTTATGAAACTGAGT+CGG 0.608847 contig366end:-12474 MsG0080048597.01.T01:three_prime_UTR
ATAGTTCTATACATGGGCTG+TGG 0.611547 contig366end:-12131 MsG0080048597.01.T01:three_prime_UTR
AGTAGGTGGTCCCAAACTGA+GGG 0.612881 contig366end:-13912 MsG0080048597.01.T01:CDS
GAAGTTTACTGAGGATTTGG+GGG 0.615619 contig366end:+12602 None:intergenic
TTTAACAAAATACACACTGG+AGG 0.618188 contig366end:+12273 None:intergenic
AGCAAAGAGCTGCTTGAGTG+GGG 0.619453 contig366end:-12653 MsG0080048597.01.T01:CDS
AAGTTCCAATGAAATGGGGA+TGG 0.619469 contig366end:+13795 None:intergenic
AGCGTCGCAGGAGGCGATCG+CGG 0.619577 contig366end:+15843 None:intergenic
AGGAAAATGTTGGACAACCA+AGG 0.622216 contig366end:-12865 MsG0080048597.01.T01:intron
GTTGTTACTTTCACTGTTGG+GGG 0.623451 contig366end:-15622 MsG0080048597.01.T01:CDS
TAGTAGGTGGTCCCAAACTG+AGG 0.624646 contig366end:-13913 MsG0080048597.01.T01:CDS
CAACGGAGGATACACAATTG+AGG 0.625719 contig366end:-12967 MsG0080048597.01.T01:CDS
AATGCAGGTTATGCGGCTGA+CGG 0.628000 contig366end:-15676 MsG0080048597.01.T01:CDS
GGTTATTATATACTAAAAGG+GGG 0.628044 contig366end:+16095 None:intergenic
TGCGATATAGTTCTATACAT+GGG 0.630557 contig366end:-12137 MsG0080048597.01.T01:three_prime_UTR
AGGTGGTCCCAAACTGAGGG+TGG 0.630619 contig366end:-13909 MsG0080048597.01.T01:CDS
TTGTTACTTTCACTGTTGGG+GGG 0.638206 contig366end:-15621 MsG0080048597.01.T01:CDS
ATTGACGAGATGGTCGAGGA+GGG 0.639532 contig366end:+15738 None:intergenic
TGAAATTGCCTGAGGGATGT+GGG 0.642606 contig366end:-13361 MsG0080048597.01.T01:intron
TGACGCCGACTTGGACTAGT+CGG 0.644497 contig366end:+15797 None:intergenic
GATGCCATCAGCTAAAGGAA+TGG 0.646135 contig366end:-13828 MsG0080048597.01.T01:CDS
CTGCTGCTTCCAACCCCATG+TGG 0.646622 contig366end:+13981 None:intergenic
CATTGACGAGATGGTCGAGG+AGG 0.646882 contig366end:+15737 None:intergenic
TGCATCAGCTAGTTCGACAA+AGG 0.650364 contig366end:+13871 None:intergenic
ACAGGATCACGACTGAAAGT+GGG 0.654306 contig366end:+14405 None:intergenic
GGTAAGAGTAAGACAGTGGG+AGG 0.655254 contig366end:+16158 None:intergenic
AAGCAATCACTCGCTTCTCG+GGG 0.655548 contig366end:+13174 None:intergenic
CCACCAACAATACAAATAAG+CGG 0.658046 contig366end:+15553 None:intergenic
CAATAAGTTCCAATGAAATG+GGG 0.661557 contig366end:+13791 None:intergenic
GGGGTTGGAAGCAGCAGTTG+AGG 0.663030 contig366end:-13975 MsG0080048597.01.T01:CDS
ATCATCTTCCTGATAAACAA+CGG 0.665526 contig366end:-12984 MsG0080048597.01.T01:CDS
GTAGATTGAGTAACCACATG+GGG 0.665962 contig366end:-13994 MsG0080048597.01.T01:intron
GTCGCAGGAGGCGATCGCGG+TGG 0.669288 contig366end:+15846 None:intergenic
ACCGACTCTGAAGTTTACTG+AGG 0.674817 contig366end:+12593 None:intergenic
GCACGCCGACTAGTCCAAGT+CGG 0.675934 contig366end:-15802 MsG0080048597.01.T01:CDS
GTAAAACCTGTACTAGTAGG+TGG 0.676238 contig366end:-13926 MsG0080048597.01.T01:CDS
TTGATTGATGCAATTCACAA+TGG 0.677426 contig366end:-12891 MsG0080048597.01.T01:CDS
GTTATTATATACTAAAAGGG+GGG 0.678060 contig366end:+16096 None:intergenic
AAATGGGAAGAGACTAAGAG+GGG 0.678158 contig366end:+16074 None:intergenic
TGTAGATTGAGTAACCACAT+GGG 0.679957 contig366end:-13995 MsG0080048597.01.T01:intron
GAAATGGGAAGAGACTAAGA+GGG 0.684252 contig366end:+16073 None:intergenic
GCTCGTTACAGCAACCGATG+AGG 0.687230 contig366end:+15701 None:intergenic
GTTGTGAAATGAGATAGTGA+TGG 0.693358 contig366end:+16124 None:intergenic
AGGATGTATCGACAATGCTG+AGG 0.697986 contig366end:-13022 MsG0080048597.01.T01:CDS
ATCTTCCTGATAAACAACGG+AGG 0.706663 contig366end:-12981 MsG0080048597.01.T01:CDS
GGTGGCTGGTTGGATCGGAG+AGG 0.716934 contig366end:+15864 None:intergenic
GTATCGACAATGCTGAGGTG+TGG 0.717609 contig366end:-13017 MsG0080048597.01.T01:CDS
GCCGGGAACGGAGAAGACGT+CGG 0.741181 contig366end:+15774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATTTATGAACCAAA+CGG - contig366end:16028-16047 MsG0080048597.01.T01:five_prime_UTR 15.0%
!!! TTTTGTAATTTTCATATATC+CGG + contig366end:15985-16004 None:intergenic 15.0%
!! TAAAATCATGGTAATTTAAG+CGG - contig366end:13626-13645 MsG0080048597.01.T01:CDS 20.0%
!!! AAAATTGTAGTAATTTTAGC+TGG - contig366end:13292-13311 MsG0080048597.01.T01:intron 20.0%
!!! ATTTGTCATTTTTTGGTTTT+TGG - contig366end:12874-12893 MsG0080048597.01.T01:CDS 20.0%
!!! GCTAAAATTACTACAATTTT+AGG + contig366end:13292-13311 None:intergenic 20.0%
!!! TCTCAATTTTTAGAATCAAA+TGG + contig366end:15741-15760 None:intergenic 20.0%
!!! TTGCTAAATTTGTCATTTTT+TGG - contig366end:12867-12886 MsG0080048597.01.T01:CDS 20.0%
!!! TTTGATGGATATTTAAAGTA+TGG + contig366end:12282-12301 None:intergenic 20.0%
!!! TTTGTCATTTTTTGGTTTTT+GGG - contig366end:12875-12894 MsG0080048597.01.T01:CDS 20.0%
!!! TTTTTGAAGTATAGTTTTGA+TGG + contig366end:12297-12316 None:intergenic 20.0%
!!! TTTTTTAACAAAATACACAC+TGG + contig366end:16015-16034 None:intergenic 20.0%
! AAAATCATGGTAATTTAAGC+GGG - contig366end:13627-13646 MsG0080048597.01.T01:CDS 25.0%
! AAACATAAGCTATCTTTCTT+TGG + contig366end:15578-15597 None:intergenic 25.0%
! AAATAGAGAAAGACTTACTT+GGG + contig366end:13919-13938 None:intergenic 25.0%
! AACATAACATTAACTCTCAA+AGG + contig366end:14821-14840 None:intergenic 25.0%
! ACATACATAATTAGTGAGTT+TGG + contig366end:16094-16113 None:intergenic 25.0%
! AGGGGTTATTATATACTAAA+AGG + contig366end:12193-12212 None:intergenic 25.0%
! CCATCAATAAAAGTAAATTC+CGG + contig366end:15785-15804 None:intergenic 25.0%
! GCATCTTTAGTTAGTTAATT+TGG + contig366end:16062-16081 None:intergenic 25.0%
! GGGGTTATTATATACTAAAA+GGG + contig366end:12192-12211 None:intergenic 25.0%
! GGGTTATTATATACTAAAAG+GGG + contig366end:12191-12210 None:intergenic 25.0%
! GGTTATTATATACTAAAAGG+GGG + contig366end:12190-12209 None:intergenic 25.0%
! GTTATTATATACTAAAAGGG+GGG + contig366end:12189-12208 None:intergenic 25.0%
! TACATTACATGTTTGAATTG+AGG - contig366end:13551-13570 MsG0080048597.01.T01:CDS 25.0%
! TATGAGTTTCAAATGCAATA+TGG - contig366end:15037-15056 MsG0080048597.01.T01:intron 25.0%
! TCAAACATGTAATGTATGTT+TGG + contig366end:13547-13566 None:intergenic 25.0%
! TCATCAACATTTCCAATAAT+CGG + contig366end:14239-14258 None:intergenic 25.0%
!! GCTTAAATTACCATGATTTT+AGG + contig366end:13627-13646 None:intergenic 25.0%
!!! AGGCTAGTTTTTGTTAAAAT+CGG - contig366end:14137-14156 MsG0080048597.01.T01:intron 25.0%
!!! TTGATGAAAAGTTTAGTTTG+TGG + contig366end:12244-12263 None:intergenic 25.0%
!!! TTTTTGCTTTTGCAAAATCA+TGG - contig366end:13135-13154 MsG0080048597.01.T01:intron 25.0%
AACAAAATGTCCACAATGTT+AGG - contig366end:12333-12352 MsG0080048597.01.T01:three_prime_UTR 30.0%
AAGCCTGTTTATATAAGCAT+TGG - contig366end:13829-13848 MsG0080048597.01.T01:CDS 30.0%
AAGTTTGGTAGAATCACATT+GGG + contig366end:14168-14187 None:intergenic 30.0%
ACAACATCTGTTGTATATGT+TGG + contig366end:14844-14863 None:intergenic 30.0%
ACTTGTTTATGAAACTGAGT+CGG - contig366end:15808-15827 MsG0080048597.01.T01:CDS 30.0%
AGAGCTGTAGTCATTAAAAA+TGG + contig366end:14585-14604 None:intergenic 30.0%
AGGATTCTTCATCATACTAT+TGG - contig366end:12780-12799 MsG0080048597.01.T01:intron 30.0%
AGTCCCATAATCATTAGAAT+TGG + contig366end:12757-12776 None:intergenic 30.0%
ATCATCTTCCTGATAAACAA+CGG - contig366end:15298-15317 MsG0080048597.01.T01:intron 30.0%
ATCTAAAGATCCTAACATTG+TGG + contig366end:12346-12365 None:intergenic 30.0%
ATTCAGTCACTTGAGATAAA+TGG - contig366end:15846-15865 MsG0080048597.01.T01:CDS 30.0%
ATTGAGGTTGAAATTCATGA+TGG - contig366end:15331-15350 MsG0080048597.01.T01:intron 30.0%
CAAAAATTGAAATTGCCTGA+GGG - contig366end:14914-14933 MsG0080048597.01.T01:intron 30.0%
CAAATAGAGAAAGACTTACT+TGG + contig366end:13920-13939 None:intergenic 30.0%
CAAATGCAATATGGTTCAAT+TGG - contig366end:15046-15065 MsG0080048597.01.T01:intron 30.0%
CAATAAGTTCCAATGAAATG+GGG + contig366end:14494-14513 None:intergenic 30.0%
CAGCACTTATATTCTTGTTA+TGG + contig366end:15484-15503 None:intergenic 30.0%
CATACAATGTTATCAAGAAC+TGG - contig366end:15356-15375 MsG0080048597.01.T01:intron 30.0%
CATACACTACATGTTTGAAT+TGG - contig366end:13201-13220 MsG0080048597.01.T01:CDS 30.0%
CATTTCATTGGAACTTATTG+GGG - contig366end:14494-14513 MsG0080048597.01.T01:CDS 30.0%
CCAATAAGTTCCAATGAAAT+GGG + contig366end:14495-14514 None:intergenic 30.0%
CCATTTCATTGGAACTTATT+GGG - contig366end:14493-14512 MsG0080048597.01.T01:CDS 30.0%
CTGCTTATGAAAATTACCAT+AGG - contig366end:14750-14769 MsG0080048597.01.T01:intron 30.0%
GACCCAATTCTAATGATTAT+GGG - contig366end:12751-12770 MsG0080048597.01.T01:CDS 30.0%
GAGCTGTAGTCATTAAAAAT+GGG + contig366end:14584-14603 None:intergenic 30.0%
GCACTTAGTTGTTGTAAAAT+GGG - contig366end:13694-13713 MsG0080048597.01.T01:CDS 30.0%
GTCCCATAATCATTAGAATT+GGG + contig366end:12756-12775 None:intergenic 30.0%
GTTTATTGTGTTTGTGAAGT+TGG - contig366end:12931-12950 MsG0080048597.01.T01:CDS 30.0%
TAAAAGTAAATTCCGGACAA+TGG + contig366end:15778-15797 None:intergenic 30.0%
TAAGTTAACAAGTGCATTTC+TGG + contig366end:14199-14218 None:intergenic 30.0%
TAAGTTTGGTAGAATCACAT+TGG + contig366end:14169-14188 None:intergenic 30.0%
TCAAAAATTGAAATTGCCTG+AGG - contig366end:14913-14932 MsG0080048597.01.T01:intron 30.0%
TCAAACATGTAGTGTATGTT+TGG + contig366end:13199-13218 None:intergenic 30.0%
TGCACTTAGTTGTTGTAAAA+TGG - contig366end:13693-13712 MsG0080048597.01.T01:CDS 30.0%
TGTACATTGTCCTAAAATCA+TGG - contig366end:13614-13633 MsG0080048597.01.T01:CDS 30.0%
TTAACTTATGTGTGTAGAAG+AGG - contig366end:14211-14230 MsG0080048597.01.T01:intron 30.0%
TTCAAATCATCCAAAGAATC+TGG - contig366end:13986-14005 MsG0080048597.01.T01:CDS 30.0%
TTGATTGATGCAATTCACAA+TGG - contig366end:15391-15410 MsG0080048597.01.T01:intron 30.0%
TTTAACAAAATACACACTGG+AGG + contig366end:16012-16031 None:intergenic 30.0%
TTTGATGAAGGATTTCCTAA+AGG - contig366end:14697-14716 MsG0080048597.01.T01:intron 30.0%
! ACTGATAAAATCTTGTTTGC+AGG - contig366end:15014-15033 MsG0080048597.01.T01:intron 30.0%
! ACTGTGATTTTGCAAAATCA+TGG - contig366end:13487-13506 MsG0080048597.01.T01:CDS 30.0%
! ATGATTTTGCAAAATCACAG+TGG + contig366end:13488-13507 None:intergenic 30.0%
! CAGTTCTTGATAACATTGTA+TGG + contig366end:15358-15377 None:intergenic 30.0%
! CTTGTTATGGAAGAAATTTG+AGG + contig366end:15471-15490 None:intergenic 30.0%
! GATACATAGTGACTTTTGTT+TGG - contig366end:13405-13424 MsG0080048597.01.T01:CDS 30.0%
! TGCGATATAGTTCTATACAT+GGG - contig366end:16145-16164 MsG0080048597.01.T01:five_prime_UTR 30.0%
! TTAACTCTCAAAGGTTCTTT+TGG + contig366end:14812-14831 None:intergenic 30.0%
! TTGCGATATAGTTCTATACA+TGG - contig366end:16144-16163 MsG0080048597.01.T01:five_prime_UTR 30.0%
!! AGTTGTTGTAAAATGGGTTT+TGG - contig366end:13700-13719 MsG0080048597.01.T01:CDS 30.0%
!! ATTTGGATGCATTTTGATGA+AGG - contig366end:14685-14704 MsG0080048597.01.T01:intron 30.0%
!! CCGGAATTTACTTTTATTGA+TGG - contig366end:15782-15801 MsG0080048597.01.T01:CDS 30.0%
!! CTGTGGTTTGATTTGATTAT+AGG - contig366end:13735-13754 MsG0080048597.01.T01:CDS 30.0%
!! TTTGATTTGATTATAGGCTG+TGG - contig366end:13741-13760 MsG0080048597.01.T01:CDS 30.0%
!!! GCTAGTTTTTGTTAAAATCG+GGG - contig366end:14139-14158 MsG0080048597.01.T01:intron 30.0%
!!! GGCTAGTTTTTGTTAAAATC+GGG - contig366end:14138-14157 MsG0080048597.01.T01:intron 30.0%
!!! TTTTGGGTTGATTTGTTTGA+TGG - contig366end:12891-12910 MsG0080048597.01.T01:CDS 30.0%
AACACAAAAGCCAGATTCTT+TGG + contig366end:13999-14018 None:intergenic 35.0%
AATTACTTGAAAGTGGGATG+AGG + contig366end:13945-13964 None:intergenic 35.0%
AATTTGGTCATCAAACCGTT+TGG + contig366end:16046-16065 None:intergenic 35.0%
ACAATGGTGAAGGAAAATGT+TGG - contig366end:15407-15426 MsG0080048597.01.T01:intron 35.0%
ACACGCTAATTACTTGAAAG+TGG + contig366end:13952-13971 None:intergenic 35.0%
ACACTTGGCTGTTGTAAAAT+GGG - contig366end:13351-13370 MsG0080048597.01.T01:intron 35.0%
ACTACATGTTTGAATTGGAG+TGG - contig366end:13206-13225 MsG0080048597.01.T01:CDS 35.0%
ACTTCTTCTCAAGAAAGAGA+AGG - contig366end:14616-14635 MsG0080048597.01.T01:intron 35.0%
AGGGTTTGTCAGAATTATAG+TGG - contig366end:13436-13455 MsG0080048597.01.T01:CDS 35.0%
AGTGTTCTTAATGCTATTGC+TGG - contig366end:12687-12706 MsG0080048597.01.T01:CDS 35.0%
ATCAAAATGCATCCAAATGC+AGG + contig366end:14683-14702 None:intergenic 35.0%
ATCAAGAACTGGAATTACAC+TGG - contig366end:15367-15386 MsG0080048597.01.T01:intron 35.0%
CAAAATCATGGTAAGCACTA+TGG - contig366end:13499-13518 MsG0080048597.01.T01:CDS 35.0%
CACGCTAATTACTTGAAAGT+GGG + contig366end:13951-13970 None:intergenic 35.0%
CAGCCAATGCTTATATAAAC+AGG + contig366end:13835-13854 None:intergenic 35.0%
CAGTGAGTTTGACAAAATCA+TGG + contig366end:13171-13190 None:intergenic 35.0%
CATTGAAGTGATTGTTCACA+AGG - contig366end:15598-15617 MsG0080048597.01.T01:CDS 35.0%
CCACCAACAATACAAATAAG+CGG + contig366end:12732-12751 None:intergenic 35.0%
CCCAATAAGTTCCAATGAAA+TGG + contig366end:14496-14515 None:intergenic 35.0%
CCCATTTCATTGGAACTTAT+TGG - contig366end:14492-14511 MsG0080048597.01.T01:CDS 35.0%
CTACATGTTTGAATTGGAGT+GGG - contig366end:13207-13226 MsG0080048597.01.T01:CDS 35.0%
CTGAAGTTTACTGAGGATTT+GGG + contig366end:15685-15704 None:intergenic 35.0%
CTTTCTCCTAAATGCTTTAC+AGG - contig366end:15228-15247 MsG0080048597.01.T01:intron 35.0%
GGACCCAATTCTAATGATTA+TGG - contig366end:12750-12769 MsG0080048597.01.T01:CDS 35.0%
GTAGTCATTAAAAATGGGAC+CGG + contig366end:14579-14598 None:intergenic 35.0%
GTTGTGAAATGAGATAGTGA+TGG + contig366end:12161-12180 None:intergenic 35.0%
GTTGTTTATCAGGAAGATGA+TGG + contig366end:15299-15318 None:intergenic 35.0%
GTTTGAATTAGCAGCAAGTT+TGG - contig366end:14075-14094 MsG0080048597.01.T01:intron 35.0%
TACACTGTCAAACTAACTAG+TGG - contig366end:13315-13334 MsG0080048597.01.T01:intron 35.0%
TACACTTGGCTGTTGTAAAA+TGG - contig366end:13350-13369 MsG0080048597.01.T01:intron 35.0%
TAGCTATTACCAAATCACAG+CGG + contig366end:13102-13121 None:intergenic 35.0%
TGAAGTTTACTGAGGATTTG+GGG + contig366end:15684-15703 None:intergenic 35.0%
TGAGATTGTTGAAGCTTCAA+AGG - contig366end:14117-14136 MsG0080048597.01.T01:intron 35.0%
TGCAATATGGTTCAATTGGA+TGG - contig366end:15050-15069 MsG0080048597.01.T01:intron 35.0%
TGTAGATTGAGTAACCACAT+GGG - contig366end:14287-14306 MsG0080048597.01.T01:intron 35.0%
TGTGATTCTACCAAACTTAC+TGG - contig366end:14170-14189 MsG0080048597.01.T01:intron 35.0%
TTAATGACTACAGCTCTGTT+GGG - contig366end:14588-14607 MsG0080048597.01.T01:intron 35.0%
TTAGCGTGTCTTCGATATTA+CGG - contig366end:13963-13982 MsG0080048597.01.T01:CDS 35.0%
TTGTAGATTGAGTAACCACA+TGG - contig366end:14286-14305 MsG0080048597.01.T01:intron 35.0%
TTGTGGTTTAACGTGGAAAT+GGG + contig366end:12227-12246 None:intergenic 35.0%
TTTAATGACTACAGCTCTGT+TGG - contig366end:14587-14606 MsG0080048597.01.T01:intron 35.0%
TTTCTGGATTCCAGTAAGTT+TGG + contig366end:14183-14202 None:intergenic 35.0%
TTTGTGGTTTAACGTGGAAA+TGG + contig366end:12228-12247 None:intergenic 35.0%
! ACTTCAAAGGTTTTCCATCT+GGG + contig366end:14784-14803 None:intergenic 35.0%
! AGTTTTTGTTAAAATCGGGG+TGG - contig366end:14142-14161 MsG0080048597.01.T01:intron 35.0%
! ATAGTGATGGAATGGAAAGT+TGG + contig366end:12148-12167 None:intergenic 35.0%
! CAGTTACCTGTAAAGCATTT+AGG + contig366end:15237-15256 None:intergenic 35.0%
! CATCGTGTTTAAAGCAAGTT+TGG + contig366end:14039-14058 None:intergenic 35.0%
! CTAATATACTTTGCTGCTTC+AGG - contig366end:15891-15910 MsG0080048597.01.T01:CDS 35.0%
! CTAATGATTATGGGACTAGT+AGG - contig366end:12760-12779 MsG0080048597.01.T01:intron 35.0%
! CTGTAAAGCATTTAGGAGAA+AGG + contig366end:15230-15249 None:intergenic 35.0%
! CTTTTAGATATGCCATTGTC+CGG - contig366end:15763-15782 MsG0080048597.01.T01:CDS 35.0%
! GAAATGAGATAGTGATGGAA+TGG + contig366end:12156-12175 None:intergenic 35.0%
! GTCTATTGTTGTTACATTGC+TGG - contig366end:15710-15729 MsG0080048597.01.T01:CDS 35.0%
! TCTGAAGTTTACTGAGGATT+TGG + contig366end:15686-15705 None:intergenic 35.0%
! TTCATGCATGCTTCATTTTC+AGG - contig366end:15505-15524 MsG0080048597.01.T01:CDS 35.0%
! TTGCCGCTTATTTGTATTGT+TGG - contig366end:12726-12745 MsG0080048597.01.T01:CDS 35.0%
!! ACTTTTGTTTGGTATCACAG+AGG - contig366end:13416-13435 MsG0080048597.01.T01:CDS 35.0%
!! CTTTTGTTTGGTATCACAGA+GGG - contig366end:13417-13436 MsG0080048597.01.T01:CDS 35.0%
!! GTGTTGTTACTTTCACTGTT+GGG - contig366end:12658-12677 MsG0080048597.01.T01:CDS 35.0%
!! GTTTAGTTTGTGGTTTAACG+TGG + contig366end:12234-12253 None:intergenic 35.0%
!! TCAGACTGTTACTTGTTTTC+AGG - contig366end:12836-12855 MsG0080048597.01.T01:intron 35.0%
!! TGTGTTGTTACTTTCACTGT+TGG - contig366end:12657-12676 MsG0080048597.01.T01:CDS 35.0%
!! TGTTGTTACTTTCACTGTTG+GGG - contig366end:12659-12678 MsG0080048597.01.T01:CDS 35.0%
!!! TTACTTGTTTTCAGGTTCGT+TGG - contig366end:12844-12863 MsG0080048597.01.T01:intron 35.0%
!!! TTTGGTGATTGTTTTGACTG+TGG - contig366end:13718-13737 MsG0080048597.01.T01:CDS 35.0%
!!! TTTTCAGGTATTCTGTGAAG+AGG - contig366end:15520-15539 MsG0080048597.01.T01:CDS 35.0%
AAATGGGAAGAGACTAAGAG+GGG + contig366end:12211-12230 None:intergenic 40.0%
AAGTTCCAATGAAATGGGGA+TGG + contig366end:14490-14509 None:intergenic 40.0%
AGGAAAATGTTGGACAACCA+AGG - contig366end:15417-15436 MsG0080048597.01.T01:intron 40.0%
ATAGGCTGTGGTGAATAACT+TGG - contig366end:13753-13772 MsG0080048597.01.T01:CDS 40.0%
ATCTTCCTGATAAACAACGG+AGG - contig366end:15301-15320 MsG0080048597.01.T01:intron 40.0%
CAACTAAGTGCATGCATGTT+TGG + contig366end:13685-13704 None:intergenic 40.0%
CACTTGGCTGTTGTAAAATG+GGG - contig366end:13352-13371 MsG0080048597.01.T01:intron 40.0%
CAGTGAGTTTGTCAGAATCA+CGG - contig366end:12980-12999 MsG0080048597.01.T01:CDS 40.0%
CATAGGATATTTGTCCCAGA+TGG - contig366end:14767-14786 MsG0080048597.01.T01:intron 40.0%
CCGCTTATTTGTATTGTTGG+TGG - contig366end:12729-12748 MsG0080048597.01.T01:CDS 40.0%
CGGACAATGGCATATCTAAA+AGG + contig366end:15765-15784 None:intergenic 40.0%
CTCAACTCCTGACTAAAATC+AGG + contig366end:12810-12829 None:intergenic 40.0%
GAAATGGGAAGAGACTAAGA+GGG + contig366end:12212-12231 None:intergenic 40.0%
GAAGTTTACTGAGGATTTGG+GGG + contig366end:15683-15702 None:intergenic 40.0%
GATGCAATTCACAATGGTGA+AGG - contig366end:15397-15416 MsG0080048597.01.T01:intron 40.0%
GCAGTAAAACCTGTACTAGT+AGG - contig366end:14353-14372 MsG0080048597.01.T01:intron 40.0%
GTAAAACCTGTACTAGTAGG+TGG - contig366end:14356-14375 MsG0080048597.01.T01:intron 40.0%
GTAGAAGAGGAACCGATTAT+TGG - contig366end:14224-14243 MsG0080048597.01.T01:intron 40.0%
GTAGATTGAGTAACCACATG+GGG - contig366end:14288-14307 MsG0080048597.01.T01:intron 40.0%
TAATTTAAGCGGGCACATTG+TGG - contig366end:13637-13656 MsG0080048597.01.T01:CDS 40.0%
TCCTCAGTAAACTTCAGAGT+CGG - contig366end:15688-15707 MsG0080048597.01.T01:CDS 40.0%
TGAATTAGCAGCAAGTTTGG+TGG - contig366end:14078-14097 MsG0080048597.01.T01:intron 40.0%
TGTATCCTCCGTTGTTTATC+AGG + contig366end:15309-15328 None:intergenic 40.0%
! AGACACTGTTACTTAGTCTC+CGG - contig366end:15963-15982 MsG0080048597.01.T01:exon 40.0%
! ATAGTTCTATACATGGGCTG+TGG - contig366end:16151-16170 MsG0080048597.01.T01:five_prime_UTR 40.0%
! CATCTGGGACAAATATCCTA+TGG + contig366end:14769-14788 None:intergenic 40.0%
! GACTTCAAAGGTTTTCCATC+TGG + contig366end:14785-14804 None:intergenic 40.0%
! GTTGGTAAGAGTAAGACAGT+GGG + contig366end:12130-12149 None:intergenic 40.0%
!! AGTTGGTAAGAGTAAGACAG+TGG + contig366end:12131-12150 None:intergenic 40.0%
!! CTGATTTTAGTCAGGAGTTG+AGG - contig366end:12808-12827 MsG0080048597.01.T01:intron 40.0%
!! GTTGTTACTTTCACTGTTGG+GGG - contig366end:12660-12679 MsG0080048597.01.T01:CDS 40.0%
!! TCTTTTGGTGCAGACTTCAA+AGG + contig366end:14797-14816 None:intergenic 40.0%
!! TGGTGTTCCTGATTTTAGTC+AGG - contig366end:12800-12819 MsG0080048597.01.T01:intron 40.0%
!! TTGTTACTTTCACTGTTGGG+GGG - contig366end:12661-12680 MsG0080048597.01.T01:CDS 40.0%
AAAGTGGGATGAGGAATACC+AGG + contig366end:13865-13884 None:intergenic 45.0%
AAGCAAAGAGCTGCTTGAGT+GGG - contig366end:15628-15647 MsG0080048597.01.T01:CDS 45.0%
AAGCGAGTGATTGCTTGCAT+TGG - contig366end:15115-15134 MsG0080048597.01.T01:intron 45.0%
ACAGGATCACGACTGAAAGT+GGG + contig366end:13880-13899 None:intergenic 45.0%
ACTTGGGAGCGAGTGAAAAA+GGG + contig366end:13903-13922 None:intergenic 45.0%
ATTAGCAACCACAACCCGAT+CGG + contig366end:14657-14676 None:intergenic 45.0%
ATTGAGTAACCACATGGGGT+TGG - contig366end:14292-14311 MsG0080048597.01.T01:intron 45.0%
CAACGGAGGATACACAATTG+AGG - contig366end:15315-15334 MsG0080048597.01.T01:intron 45.0%
CAATGTCAAGTGACTCACCT+TGG + contig366end:15437-15456 None:intergenic 45.0%
CAGCCAAGTGTATGCATGTT+TGG + contig366end:13342-13361 None:intergenic 45.0%
CATGAAACGACGTCGTTGTT+TGG + contig366end:12381-12400 None:intergenic 45.0%
GATGCCATCAGCTAAAGGAA+TGG - contig366end:14454-14473 MsG0080048597.01.T01:CDS 45.0%
GCTGATGCATACTTGTTTGC+CGG - contig366end:14557-14576 MsG0080048597.01.T01:intron 45.0%
GGAAATGGGAAGAGACTAAG+AGG + contig366end:12213-12232 None:intergenic 45.0%
GGTCCAAACATGCATACACT+TGG - contig366end:13336-13355 MsG0080048597.01.T01:intron 45.0%
GGTTCAATTGGATGGTCTGT+TGG - contig366end:15058-15077 MsG0080048597.01.T01:intron 45.0%
TACTTGGGAGCGAGTGAAAA+AGG + contig366end:13904-13923 None:intergenic 45.0%
TGAAATTGCCTGAGGGATGT+GGG - contig366end:14921-14940 MsG0080048597.01.T01:intron 45.0%
TGCATCAGCTAGTTCGACAA+AGG + contig366end:14414-14433 None:intergenic 45.0%
TGCTTTACAGGTAACTGCAC+AGG - contig366end:15240-15259 MsG0080048597.01.T01:intron 45.0%
TTGAAATTGCCTGAGGGATG+TGG - contig366end:14920-14939 MsG0080048597.01.T01:intron 45.0%
TTTACTGAGGATTTGGGGGA+CGG + contig366end:15679-15698 None:intergenic 45.0%
TTTCTTTGGTCCTGTTGCTG+TGG + contig366end:15564-15583 None:intergenic 45.0%
! AGGATGTATCGACAATGCTG+AGG - contig366end:15260-15279 MsG0080048597.01.T01:intron 45.0%
! CAAGTTTGGTGGAATCATGG+TGG - contig366end:14089-14108 MsG0080048597.01.T01:intron 45.0%
! CAGCAAGTTTGGTGGAATCA+TGG - contig366end:14086-14105 MsG0080048597.01.T01:intron 45.0%
! GTGATTGCTTGCATTGGTGA+TGG - contig366end:15121-15140 MsG0080048597.01.T01:intron 45.0%
! GTTGCTAATGGACCTGCATT+TGG - contig366end:14668-14687 MsG0080048597.01.T01:intron 45.0%
!! ACCGACTCTGAAGTTTACTG+AGG + contig366end:15692-15711 None:intergenic 45.0%
!! CATTGGTGATGGAAGCTTTC+AGG - contig366end:15132-15151 MsG0080048597.01.T01:intron 45.0%
!! TTATTGGGGTGCTGTGAGTA+CGG - contig366end:14508-14527 MsG0080048597.01.T01:CDS 45.0%
AACACTTACCCACATCCCTC+AGG + contig366end:14932-14951 None:intergenic 50.0%
AAGCAATCACTCGCTTCTCG+GGG + contig366end:15111-15130 None:intergenic 50.0%
AATCATTGTGCAGCCCGATC+GGG - contig366end:14640-14659 MsG0080048597.01.T01:intron 50.0%
AATGCAGGTTATGCGGCTGA+CGG - contig366end:12606-12625 MsG0080048597.01.T01:exon 50.0%
ACAGCTGTGATTGCTGAGAC+AGG - contig366end:14872-14891 MsG0080048597.01.T01:intron 50.0%
AGCAAAGAGCTGCTTGAGTG+GGG - contig366end:15629-15648 MsG0080048597.01.T01:CDS 50.0%
AGCTGTGATTGCTGAGACAG+GGG - contig366end:14874-14893 MsG0080048597.01.T01:intron 50.0%
AGTAGGTGGTCCCAAACTGA+GGG - contig366end:14370-14389 MsG0080048597.01.T01:intron 50.0%
ATGAAATGGGGATGGTGCTC+AGG + contig366end:14482-14501 None:intergenic 50.0%
ATTGACGAGATGGTCGAGGA+GGG + contig366end:12547-12566 None:intergenic 50.0%
CAAGCAAAGAGCTGCTTGAG+TGG - contig366end:15627-15646 MsG0080048597.01.T01:CDS 50.0%
CAAGCAATCACTCGCTTCTC+GGG + contig366end:15112-15131 None:intergenic 50.0%
CAATCATTGTGCAGCCCGAT+CGG - contig366end:14639-14658 MsG0080048597.01.T01:intron 50.0%
CAGCTGTGATTGCTGAGACA+GGG - contig366end:14873-14892 MsG0080048597.01.T01:intron 50.0%
CGACCATCTCGTCAATGAAC+CGG - contig366end:12551-12570 MsG0080048597.01.T01:three_prime_UTR 50.0%
CGAGCTGAATGCAGGTTATG+CGG - contig366end:12599-12618 MsG0080048597.01.T01:exon 50.0%
GAAGCAATTGCCACAGCAAC+AGG - contig366end:15551-15570 MsG0080048597.01.T01:CDS 50.0%
GACAGGATCACGACTGAAAG+TGG + contig366end:13881-13900 None:intergenic 50.0%
GAGCACCATCCCCATTTCAT+TGG - contig366end:14482-14501 MsG0080048597.01.T01:CDS 50.0%
GCAAGCAATCACTCGCTTCT+CGG + contig366end:15113-15132 None:intergenic 50.0%
GCTATTGGCAGCAGAAACTC+TGG + contig366end:15657-15676 None:intergenic 50.0%
GCTGTGATGCCATCAGCTAA+AGG - contig366end:14449-14468 MsG0080048597.01.T01:CDS 50.0%
GGGACCATTCCTTTAGCTGA+TGG + contig366end:14461-14480 None:intergenic 50.0%
GGTAAGAGTAAGACAGTGGG+AGG + contig366end:12127-12146 None:intergenic 50.0%
GTCGAACTAGCTGATGCAAG+TGG - contig366end:14416-14435 MsG0080048597.01.T01:CDS 50.0%
GTGACTTTGCCGCTGTGATT+TGG - contig366end:13090-13109 MsG0080048597.01.T01:intron 50.0%
GTTCATTGACGAGATGGTCG+AGG + contig366end:12551-12570 None:intergenic 50.0%
TAGTAGGTGGTCCCAAACTG+AGG - contig366end:14369-14388 MsG0080048597.01.T01:intron 50.0%
TCACGACTGAAAGTGGGATG+AGG + contig366end:13874-13893 None:intergenic 50.0%
TGAAATGGGGATGGTGCTCA+GGG + contig366end:14481-14500 None:intergenic 50.0%
TGCTGTAACGAGCTGAATGC+AGG - contig366end:12591-12610 MsG0080048597.01.T01:exon 50.0%
TGGTCTGTTGGTGCAACTCT+TGG - contig366end:15070-15089 MsG0080048597.01.T01:intron 50.0%
TTAGCAACCACAACCCGATC+GGG + contig366end:14656-14675 None:intergenic 50.0%
TTGGGACCACCTACTAGTAC+AGG + contig366end:14365-14384 None:intergenic 50.0%
! GATCGGGTTGTGGTTGCTAA+TGG - contig366end:14656-14675 MsG0080048597.01.T01:intron 50.0%
! GCTTTTGCCACCCTCAGTTT+GGG + contig366end:14383-14402 None:intergenic 50.0%
! GTATCGACAATGCTGAGGTG+TGG - contig366end:15265-15284 MsG0080048597.01.T01:intron 50.0%
! TGCTTTTGCCACCCTCAGTT+TGG + contig366end:14384-14403 None:intergenic 50.0%
!! AGCATTGGCTGTAACTTGCC+TGG - contig366end:13844-13863 MsG0080048597.01.T01:CDS 50.0%
AGGATTTGGGGGACGGCTAT+TGG + contig366end:15672-15691 None:intergenic 55.0%
ATGCGGCTGACGGTTATGCT+CGG - contig366end:12616-12635 MsG0080048597.01.T01:CDS 55.0%
CAACCGATGAGGTTCAGCTC+CGG + contig366end:12573-12592 None:intergenic 55.0%
CATTGACGAGATGGTCGAGG+AGG + contig366end:12548-12567 None:intergenic 55.0%
GAACCGGAGCTGAACCTCAT+CGG - contig366end:12567-12586 MsG0080048597.01.T01:three_prime_UTR 55.0%
GACGCTTCGCAAGTGCCTTT+AGG + contig366end:14715-14734 None:intergenic 55.0%
GCTCCGGTTCATTGACGAGA+TGG + contig366end:12557-12576 None:intergenic 55.0%
GCTCGTTACAGCAACCGATG+AGG + contig366end:12584-12603 None:intergenic 55.0%
GGAGCGAGTGAAAAAGGGAC+AGG + contig366end:13898-13917 None:intergenic 55.0%
TATGCTCGGTCACGTGGTGT+CGG - contig366end:12630-12649 MsG0080048597.01.T01:CDS 55.0%
TTGCTGAGACAGGGGACTCA+TGG - contig366end:14882-14901 MsG0080048597.01.T01:intron 55.0%
! ATACATGGGCTGTGGCCATG+TGG - contig366end:16159-16178 MsG0080048597.01.T01:five_prime_UTR 55.0%
! TACATGGGCTGTGGCCATGT+GGG - contig366end:16160-16179 MsG0080048597.01.T01:five_prime_UTR 55.0%
!! TGACGCCGACTTGGACTAGT+CGG + contig366end:12488-12507 None:intergenic 55.0%
ACCGACGTCTTCTCCGTTCC+CGG - contig366end:12507-12526 MsG0080048597.01.T01:three_prime_UTR 60.0%
AGGGTGAGGTTGAAGTCGCC+GGG + contig366end:12528-12547 None:intergenic 60.0%
AGGTGGTCCCAAACTGAGGG+TGG - contig366end:14373-14392 MsG0080048597.01.T01:intron 60.0%
GACGGTTATGCTCGGTCACG+TGG - contig366end:12624-12643 MsG0080048597.01.T01:CDS 60.0%
GAGGGTGAGGTTGAAGTCGC+CGG + contig366end:12529-12548 None:intergenic 60.0%
GAGGTTGAAGTCGCCGGGAA+CGG + contig366end:12523-12542 None:intergenic 60.0%
GGGGTTGGAAGCAGCAGTTG+AGG - contig366end:14307-14326 MsG0080048597.01.T01:intron 60.0%
! ATCGCGGTGGCTGGTTGGAT+CGG + contig366end:12426-12445 None:intergenic 60.0%
! CTGCTGCTTCCAACCCCATG+TGG + contig366end:14304-14323 None:intergenic 60.0%
! GCACGCCGACTAGTCCAAGT+CGG - contig366end:12480-12499 MsG0080048597.01.T01:three_prime_UTR 60.0%
CGAGATGGTCGAGGAGGGTG+AGG + contig366end:12542-12561 None:intergenic 65.0%
CTAGTCGGCGTGCGAGATGG+CGG + contig366end:12473-12492 None:intergenic 65.0%
GCCGGGAACGGAGAAGACGT+CGG + contig366end:12511-12530 None:intergenic 65.0%
GCCTCCTGCGACGCTACACT+CGG - contig366end:12447-12466 MsG0080048597.01.T01:three_prime_UTR 65.0%
! AGACGTCGGTGACGCCGACT+TGG + contig366end:12497-12516 None:intergenic 65.0%
! GGTGGCTGGTTGGATCGGAG+AGG + contig366end:12421-12440 None:intergenic 65.0%
! TGTGCAGCCCGATCGGGTTG+TGG - contig366end:14646-14665 MsG0080048597.01.T01:intron 65.0%
!! GGACTAGTCGGCGTGCGAGA+TGG + contig366end:12476-12495 None:intergenic 65.0%
AGCGTCGCAGGAGGCGATCG+CGG + contig366end:12442-12461 None:intergenic 70.0%
AGGCGATCGCGGTGGCTGGT+TGG + contig366end:12431-12450 None:intergenic 70.0%
GCCGAGTGTAGCGTCGCAGG+AGG + contig366end:12451-12470 None:intergenic 70.0%
CAGGAGGCGATCGCGGTGGC+TGG + contig366end:12435-12454 None:intergenic 75.0%
GCGGCCGAGTGTAGCGTCGC+AGG + contig366end:12454-12473 None:intergenic 75.0%
GTCGCAGGAGGCGATCGCGG+TGG + contig366end:12439-12458 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
contig366end gene 12119 16185 12119 ID=MsG0080048597.01;Name=MsG0080048597.01
contig366end mRNA 12119 16185 12119 ID=MsG0080048597.01.T01;Parent=MsG0080048597.01;Name=MsG0080048597.01.T01;_AED=0.46;_eAED=0.46;_QI=220|1|1|1|1|1|6|488|603
contig366end exon 15447 16185 15447 ID=MsG0080048597.01.T01:exon:26922;Parent=MsG0080048597.01.T01
contig366end exon 14384 14547 14384 ID=MsG0080048597.01.T01:exon:26923;Parent=MsG0080048597.01.T01
contig366end exon 13362 14012 13362 ID=MsG0080048597.01.T01:exon:26924;Parent=MsG0080048597.01.T01
contig366end exon 13151 13268 13151 ID=MsG0080048597.01.T01:exon:26925;Parent=MsG0080048597.01.T01
contig366end exon 12866 13054 12866 ID=MsG0080048597.01.T01:exon:26926;Parent=MsG0080048597.01.T01
contig366end exon 12119 12777 12119 ID=MsG0080048597.01.T01:exon:26927;Parent=MsG0080048597.01.T01
contig366end five_prime_UTR 15966 16185 15966 ID=MsG0080048597.01.T01:five_prime_utr;Parent=MsG0080048597.01.T01
contig366end CDS 15447 15965 15447 ID=MsG0080048597.01.T01:cds;Parent=MsG0080048597.01.T01
contig366end CDS 14384 14547 14384 ID=MsG0080048597.01.T01:cds;Parent=MsG0080048597.01.T01
contig366end CDS 13362 14012 13362 ID=MsG0080048597.01.T01:cds;Parent=MsG0080048597.01.T01
contig366end CDS 13151 13268 13151 ID=MsG0080048597.01.T01:cds;Parent=MsG0080048597.01.T01
contig366end CDS 12866 13054 12866 ID=MsG0080048597.01.T01:cds;Parent=MsG0080048597.01.T01
contig366end CDS 12607 12777 12607 ID=MsG0080048597.01.T01:cds;Parent=MsG0080048597.01.T01
contig366end three_prime_UTR 12119 12606 12119 ID=MsG0080048597.01.T01:three_prime_utr;Parent=MsG0080048597.01.T01
Gene Sequence

>MsG0080048597.01.T01

ATGTCCACAATGTTAGGATCTTTAGATATAACAAAAGCACCAAACAACGACGTCGTTTCATGCACAAAACAAAACAGCACCTCTCCGATCCAACCAGCCACCGCGATCGCCTCCTGCGACGCTACACTCGGCCGCCATCTCGCACGCCGACTAGTCCAAGTCGGCGTCACCGACGTCTTCTCCGTTCCCGGCGACTTCAACCTCACCCTCCTCGACCATCTCGTCAATGAACCGGAGCTGAACCTCATCGGTTGCTGTAACGAGCTGAATGCAGGTTATGCGGCTGACGGTTATGCTCGGTCACGTGGTGTCGGTGCTTGTGTTGTTACTTTCACTGTTGGGGGGTTGAGTGTTCTTAATGCTATTGCTGGTGCTTACAGTGAGAATTTGCCGCTTATTTGTATTGTTGGTGGACCCAATTCTAATGATTATGGGACTAGTAGGATTCTTCATCATACTATTGGTGTTCCTGATTTTAGTCAGGAGTTGAGGTGTTTTCAGACTGTTACTTGTTTTCAGGCTGTGGTGAATAACTTGGAAGATGCTCATGAGTTGATTGATACTGCGATTTCAACTGCATTGAAAGAGAGCAAGCCTGTTTATATAAGCATTGGCTGTAACTTGCCTGGTATTCCTCATCCCACTTTCAGTCGTGATCCTGTCCCTTTTTCACTCGCTCCCAAATTGAGTAACCACATGGGGTTGGAAGCAGCAGTTGAGGCAGCAGCAGAGTTTCTTAACAAAGCAGTAAAACCTGTACTAGTAGGTGGTCCCAAACTGAGGGTGGCAAAAGCATCTGATGCCTTTGTCGAACTAGCTGATGCAAGTGGTTACGCACTTGCTGTGATGCCATCAGCTAAAGGAATGGTCCCTGAGCACCATCCCCATTTCATTGGAACTTATTGGGGTGCTGTGAGTACGGCATTCTGTGCTGAGATTGTAGAATCTGCTGATGCATACTTGTTTGCCGGTCCCATTTTTAATGACTACAGCTCTGTTGGGTATTCACTTCTTCTCAAGAAAGAGAAGGCAATCATTGTGCAGCCCGATCGGGTTGTGGTTGCTAATGGACCTGCATTTGGATGCATTTTGATGAAGGATTTCCTAAAGGCACTTGCGAAGCGTCTCAAACACAACAATGCTGCTTATGAAAATTACCATAGGATATTTGTCCCAGATGGAAAACCTTTGAAGTCTGCACCAAAAGAACCTTTGAGAGTTAATGTTATGTTCCAACATATACAACAGATGTTGTCGAGTGAAACAGCTGTGATTGCTGAGACAGGGGACTCATGGTTTAACTGTCAAAAATTGAAATTGCCTGAGGGATGTGGGTATGAGTTTCAAATGCAATATGGTTCAATTGGATGGTCTGTTGGTGCAACTCTTGGCTATGCACAAGCTGTCCCCGAGAAGCGAGTGATTGCTTGCATTGGTGATGGAAGCTTTCAGGTAACTGCACAGGATGTATCGACAATGCTGAGGTGTGGTCAGAAAACCATCATCTTCCTGATAAACAACGGAGGATACACAATTGAGGTTGAAATTCATGATGGACCATACAATGTTATCAAGAACTGGAATTACACTGGATTGATTGATGCAATTCACAATGGTGAAGGAAAATGTTGGACAACCAAGGTATTCTGTGAAGAGGAGTTAGTTGAAGCAATTGCCACAGCAACAGGACCAAAGAAAGATAGCTTATGTTTCATTGAAGTGATTGTTCACAAGGATGACACAAGCAAAGAGCTGCTTGAGTGGGGTTCCAGAGTTTCTGCTGCCAATAGCCGTCCCCCAAATCCTCAGTAA
Protein sequence

>MsG0080048597.01.T01

MSTMLGSLDITKAPNNDVVSCTKQNSTSPIQPATAIASCDATLGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLVNEPELNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTSRILHHTIGVPDFSQELRCFQTVTCFQAVVNNLEDAHELIDTAISTALKESKPVYISIGCNLPGIPHPTFSRDPVPFSLAPKLSNHMGLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKASDAFVELADASGYALAVMPSAKGMVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVVANGPAFGCILMKDFLKALAKRLKHNNAAYENYHRIFVPDGKPLKSAPKEPLRVNVMFQHIQQMLSSETAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIDAIHNGEGKCWTTKVFCEEELVEAIATATGPKKDSLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ*