AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017762.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017762.01.T01 MTR_3g111700 86.925 696 26 6 1 638 1 689 0.0 1201
MsG0380017762.01.T01 MTR_3g111700 86.429 700 26 6 1 638 1 693 0.0 1199
MsG0380017762.01.T01 MTR_8g494210 65.152 66 23 0 568 633 843 908 3.97e-24 108
MsG0380017762.01.T01 MTR_3g096790 62.121 66 25 0 568 633 665 730 1.12e-22 103
MsG0380017762.01.T01 MTR_3g096790 62.121 66 25 0 568 633 602 667 1.27e-22 103
MsG0380017762.01.T01 MTR_3g088495 63.636 66 24 0 568 633 451 516 1.94e-21 98.6
MsG0380017762.01.T01 MTR_1g022415 56.716 67 29 0 568 634 1299 1365 1.44e-20 97.4
MsG0380017762.01.T01 MTR_8g079472 60.000 65 26 0 568 632 392 456 2.57e-20 94.7
MsG0380017762.01.T01 MTR_2g049770 60.000 65 26 0 568 632 384 448 2.08e-19 92.0
MsG0380017762.01.T01 MTR_8g077150 53.030 66 31 0 568 633 1372 1437 7.48e-16 82.4
MsG0380017762.01.T01 MTR_8g077150 52.542 59 28 0 568 626 1370 1428 5.03e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017762.01.T01 AT1G75100 70.423 71 21 0 568 638 581 651 6.82e-29 122
MsG0380017762.01.T01 AT1G75100 33.621 232 96 10 35 254 30 215 3.97e-12 69.7
MsG0380017762.01.T01 AT4G12770 63.636 66 24 0 568 633 821 886 2.00e-23 106
MsG0380017762.01.T01 AT4G12770 63.636 66 24 0 568 633 819 884 2.03e-23 106
MsG0380017762.01.T01 AT1G21660 63.636 66 24 0 568 633 453 518 5.04e-23 103
MsG0380017762.01.T01 AT4G12780 62.121 66 25 0 568 633 834 899 1.19e-22 103
MsG0380017762.01.T01 AT4G12780 62.121 66 25 0 568 633 824 889 1.23e-22 103
MsG0380017762.01.T01 AT4G12780 62.121 66 25 0 568 633 807 872 1.24e-22 103
MsG0380017762.01.T01 AT4G36520 56.522 69 30 0 568 636 1353 1421 4.68e-21 99.0
MsG0380017762.01.T01 AT1G75310 52.308 65 31 0 568 632 1382 1446 5.00e-19 92.4
MsG0380017762.01.T01 AT1G75310 52.308 65 31 0 568 632 1379 1443 5.08e-19 92.4
MsG0380017762.01.T01 AT1G30280 56.061 66 28 1 568 632 382 447 1.58e-16 83.2
MsG0380017762.01.T01 AT1G30280 56.667 60 25 1 568 626 382 441 8.22e-14 74.7

Find 151 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGCTTCTCTCGACTTTC+TGG 0.076935 3:+100406362 None:intergenic
TCCATTTCTCAATATATAAA+TGG 0.108600 3:-100406994 MsG0380017762.01.T01:CDS
GATTTCTTTGATGATATATT+TGG 0.176321 3:-100408277 MsG0380017762.01.T01:CDS
GAAATGGAATTTATCATTAC+TGG 0.227553 3:+100407009 None:intergenic
ATTCTGCTGTGACAAATTAT+TGG 0.231869 3:+100405852 None:intergenic
TCTTCCTTCTTTGGATTCAT+AGG 0.264090 3:+100406309 None:intergenic
GCTTTAGCATCATATGTAAT+AGG 0.281784 3:+100406608 None:intergenic
ATGGGAAAAGGCCGAGTTAA+AGG 0.292599 3:-100406204 MsG0380017762.01.T01:CDS
GAAGAACCATTGTATGTTAT+AGG 0.299531 3:+100406788 None:intergenic
CGAACAGAGATGTAATGATT+TGG 0.302677 3:+100406505 None:intergenic
ACAGGCTTCCAGCCACAATT+TGG 0.308116 3:+100404706 None:intergenic
GTCCGCTCCATTTGCCAATA+TGG 0.309597 3:+100407291 None:intergenic
ACTCTTATTAAAGATGTTCT+TGG 0.312920 3:-100406635 MsG0380017762.01.T01:CDS
GAGCTTTGGCGGAAATGATA+TGG 0.318249 3:+100406684 None:intergenic
ATCTCCTTCTTGGACTGTTC+AGG 0.335287 3:+100405904 None:intergenic
TTATCATTACTGGTATTATC+AGG 0.346818 3:+100407019 None:intergenic
CCCATTTATATATTGAGAAA+TGG 0.354288 3:+100406993 None:intergenic
GAGGTTCTTTCTGTCCTAAA+AGG 0.357444 3:+100406941 None:intergenic
GATCAGCCTTCCTGCCATAT+TGG 0.360624 3:-100407305 MsG0380017762.01.T01:intron
CGATGAATCTGGTTGAGCTT+TGG 0.366851 3:+100406670 None:intergenic
GGAGCGGACCTTCAGACATT+TGG 0.378166 3:-100407277 MsG0380017762.01.T01:CDS
CGACACAAAATCTCGACTTC+AGG 0.380047 3:-100406124 MsG0380017762.01.T01:CDS
ATTAAGCCCAGGCAGAAGTA+TGG 0.383465 3:-100406223 MsG0380017762.01.T01:CDS
GGAGGAGAGGAAGGTGAAAC+GGG 0.383656 3:-100408385 MsG0380017762.01.T01:CDS
TACGGTATAGATCTCCTTCT+TGG 0.394543 3:+100405894 None:intergenic
CCTTCCAGAGTCTGTCTGCC+AGG 0.394754 3:-100403726 MsG0380017762.01.T01:three_prime_UTR
TCCAGATAAGTTGCAGCAAA+AGG 0.397099 3:-100404614 MsG0380017762.01.T01:CDS
TGACGGCTGCTCGATGAATC+TGG 0.398504 3:+100406659 None:intergenic
AACGGCATTGCTGCTTCAAA+TGG 0.405104 3:-100407223 MsG0380017762.01.T01:CDS
CAACGAGATGGTATTCTGTT+AGG 0.407563 3:-100408529 MsG0380017762.01.T01:CDS
TACCGTAGAGACCATTGATA+TGG 0.407659 3:-100405878 MsG0380017762.01.T01:CDS
TGGAGGAGAGGAAGGTGAAA+CGG 0.407731 3:-100408386 MsG0380017762.01.T01:CDS
AGACATTTGGTTCCCCTCCC+AGG 0.409281 3:-100407264 MsG0380017762.01.T01:CDS
GCCTGGGCTTAATGAACCTC+GGG 0.409633 3:+100406233 None:intergenic
GAACAGAGATGTAATGATTT+GGG 0.411482 3:+100406506 None:intergenic
CCATTTCTCAATATATAAAT+GGG 0.420049 3:-100406993 MsG0380017762.01.T01:CDS
CTCATGTTGGTATTAAGTAT+TGG 0.423845 3:+100403782 None:intergenic
GGAGTTAGGAGGAGAAGAAA+AGG 0.425412 3:-100408304 MsG0380017762.01.T01:CDS
TTCTCGCTCTCCGGTGGAGG+AGG 0.437133 3:+100408349 None:intergenic
CATCATGAATAAAGGTACTT+TGG 0.437239 3:-100404729 MsG0380017762.01.T01:intron
TTGGTGAGGATAGTGGAGTT+AGG 0.437366 3:-100408318 MsG0380017762.01.T01:CDS
CATCTTTAATAAGAGTTTGA+CGG 0.438109 3:+100406642 None:intergenic
GTTAAGTGGATTCGTACTCC+TGG 0.442167 3:+100407246 None:intergenic
GAAGCAAGTGGTTGAAGAGC+AGG 0.447957 3:+100408181 None:intergenic
GAGAGCGAGAAACCGGTGTT+TGG 0.454844 3:-100408337 MsG0380017762.01.T01:CDS
TCCACCGGAGAGCGAGAAAC+CGG 0.456991 3:-100408344 MsG0380017762.01.T01:CDS
TACTTTGGCCAAATTGTGGC+TGG 0.459275 3:-100404714 MsG0380017762.01.T01:CDS
GATTTCCTCTGTGACGTGCT+CGG 0.462518 3:+100408478 None:intergenic
GTGTAGTTGGCCTCCTCCAC+CGG 0.464078 3:-100408359 MsG0380017762.01.T01:CDS
CTTTGTCTACTTCATCAGAC+TGG 0.466557 3:+100407083 None:intergenic
CAGAATGATATCTCAGCATC+AGG 0.467976 3:-100405835 MsG0380017762.01.T01:intron
TGAATCTGGTTGAGCTTTGG+CGG 0.468974 3:+100406673 None:intergenic
GCAGCAATGCCGTTGTTAAG+TGG 0.469551 3:+100407232 None:intergenic
AAGTAAAGGTGTGGTGCCTT+TGG 0.470139 3:-100406969 MsG0380017762.01.T01:CDS
GTGAAACGGGTTGGTGTAGT+TGG 0.470900 3:-100408372 MsG0380017762.01.T01:CDS
ATTCCCTGGCAGACAGACTC+TGG 0.475725 3:+100403722 None:intergenic
CTTTGACCTTCCCTTTAACT+CGG 0.482481 3:+100406193 None:intergenic
GTCAGTGACAATCCATTCCT+TGG 0.484645 3:+100406877 None:intergenic
AATAGACTTTGCCTGTAAGT+TGG 0.486583 3:+100407130 None:intergenic
TTCTTTGATGATATATTTGG+AGG 0.488721 3:-100408274 MsG0380017762.01.T01:CDS
TGGGAAAAGGCCGAGTTAAA+GGG 0.491286 3:-100406203 MsG0380017762.01.T01:CDS
GCAGCAGCATCACGTCTCAT+TGG 0.491946 3:+100408211 None:intergenic
GACACAAAATCTCGACTTCA+GGG 0.493171 3:-100406123 MsG0380017762.01.T01:CDS
GGTTTCTCGCTCTCCGGTGG+AGG 0.494162 3:+100408346 None:intergenic
CCTCTTGTTGATATAATTGA+AGG 0.494291 3:-100404682 MsG0380017762.01.T01:CDS
GTCCTTCCATGAGAATTTCA+CGG 0.498360 3:-100405269 MsG0380017762.01.T01:intron
TGCCTGGGCTTAATGAACCT+CGG 0.498970 3:+100406232 None:intergenic
GTGAGGATAGTGGAGTTAGG+AGG 0.501713 3:-100408315 MsG0380017762.01.T01:CDS
TGTTGGTATTAAGTATTGGC+AGG 0.511347 3:+100403786 None:intergenic
GAGAGGAAGGTGAAACGGGT+TGG 0.518346 3:-100408381 MsG0380017762.01.T01:CDS
ATATCAGCAAATGAAATGTC+AGG 0.519102 3:+100405307 None:intergenic
AACACCGGTTTCTCGCTCTC+CGG 0.519624 3:+100408340 None:intergenic
AATGCTCGAGCGCCAAGGAA+TGG 0.528812 3:-100406889 MsG0380017762.01.T01:CDS
CTTCCTGCCATATTGGCAAA+TGG 0.531469 3:-100407298 MsG0380017762.01.T01:CDS
TAAGAACAAAATCTATTCCC+TGG 0.531752 3:+100403708 None:intergenic
AAAGGAAAACCTGAAGGATG+GGG 0.532252 3:+100408150 None:intergenic
TTAAGTGGATTCGTACTCCT+GGG 0.532485 3:+100407247 None:intergenic
CCAGATAAGTTGCAGCAAAA+GGG 0.532746 3:-100404613 MsG0380017762.01.T01:CDS
TCACTGACGATCCATTCCTT+AGG 0.534108 3:+100406833 None:intergenic
GGAATACCGTGAAATTCTCA+TGG 0.535466 3:+100405263 None:intergenic
AAAAGGAAAACCTGAAGGAT+GGG 0.537032 3:+100408149 None:intergenic
CTTCCAGAGTCTGTCTGCCA+GGG 0.537924 3:-100403725 MsG0380017762.01.T01:three_prime_UTR
GAAAAGGAAAACCTGAAGGA+TGG 0.540115 3:+100408148 None:intergenic
ATATATAAATGGGCAAGTAA+AGG 0.543545 3:-100406983 MsG0380017762.01.T01:CDS
CTGGAAGGGAGCTACTCATA+AGG 0.545408 3:+100403741 None:intergenic
ATTATATCAACAAGAGGCAC+AGG 0.548095 3:+100404688 None:intergenic
TATTTACAATGCAGGAGGCA+TGG 0.549226 3:-100403841 MsG0380017762.01.T01:intron
ACCGGTTTCTCGCTCTCCGG+TGG 0.549709 3:+100408343 None:intergenic
TTAAGCCCAGGCAGAAGTAT+GGG 0.550489 3:-100406222 MsG0380017762.01.T01:CDS
AGCCATATCAATGGTCTCTA+CGG 0.552400 3:+100405876 None:intergenic
CACTCAAAATGATAGTCCTA+AGG 0.553900 3:-100406849 MsG0380017762.01.T01:CDS
GCTCCATTTGCCAATATGGC+AGG 0.554749 3:+100407295 None:intergenic
ACAGATGAGATAGTCTCTGA+TGG 0.556806 3:-100406566 MsG0380017762.01.T01:CDS
AAAATGATAGTCCTAAGGAA+TGG 0.557461 3:-100406844 MsG0380017762.01.T01:CDS
TACCGTGAAATTCTCATGGA+AGG 0.560118 3:+100405267 None:intergenic
ATTGGTGTTGAACACCCACT+TGG 0.560491 3:+100408229 None:intergenic
TGGACTCAATTCAACATGGT+TGG 0.564067 3:-100403821 MsG0380017762.01.T01:CDS
GGTTATAAGTACAAGCAGAA+AGG 0.564303 3:-100406102 MsG0380017762.01.T01:CDS
ATTATTGGCAGCCATATCAA+TGG 0.564382 3:+100405867 None:intergenic
TATTCCTATGAATCCAAAGA+AGG 0.566231 3:-100406313 MsG0380017762.01.T01:CDS
CAAAAGACAGATTCTAAGAG+AGG 0.566877 3:-100406279 MsG0380017762.01.T01:CDS
CCTGGCAGACAGACTCTGGA+AGG 0.567512 3:+100403726 None:intergenic
CCCCGAGGTTCATTAAGCCC+AGG 0.568675 3:-100406234 MsG0380017762.01.T01:CDS
CCAGGCAGAAGTATGGGAAA+AGG 0.572912 3:-100406216 MsG0380017762.01.T01:CDS
GTGGATTCGTACTCCTGGGA+GGG 0.575566 3:+100407251 None:intergenic
GTCCTAAAAGGCATCGCCAA+AGG 0.575764 3:+100406953 None:intergenic
CCGGTGTTTGGTGAGGATAG+TGG 0.578108 3:-100408325 MsG0380017762.01.T01:CDS
GGATATGATGAGGATGAGAG+TGG 0.582864 3:-100408508 MsG0380017762.01.T01:CDS
TCGGTGAGTGGAGGAGAGGA+AGG 0.583090 3:-100408394 MsG0380017762.01.T01:CDS
AAAGTCGAGAGAAGCAAACA+TGG 0.586884 3:-100406358 MsG0380017762.01.T01:CDS
AAGGAAAACCTGAAGGATGG+GGG 0.591397 3:+100408151 None:intergenic
CCTTCAATTATATCAACAAG+AGG 0.594887 3:+100404682 None:intergenic
CTCTTGTTGATATAATTGAA+GGG 0.595299 3:-100404681 MsG0380017762.01.T01:CDS
CAGGCAAAGTCTATTATCGA+AGG 0.598865 3:-100407122 MsG0380017762.01.T01:CDS
ACCACCGCGGAGGAGGTCAT+CGG 0.601531 3:-100408425 MsG0380017762.01.T01:CDS
GAGGTCATCGGTAAATTCAT+CGG 0.602396 3:-100408413 MsG0380017762.01.T01:CDS
AAGGTACTTTGGCCAAATTG+TGG 0.605347 3:-100404718 MsG0380017762.01.T01:CDS
GATAGTCCTATAACATACAA+TGG 0.611800 3:-100406794 MsG0380017762.01.T01:CDS
TGAGAAATGCTCGAGCGCCA+AGG 0.611961 3:-100406894 MsG0380017762.01.T01:CDS
AAATGATATGGTCTACACTC+TGG 0.612190 3:+100406696 None:intergenic
TGATCCTGAACAGTCCAAGA+AGG 0.614384 3:-100405908 MsG0380017762.01.T01:CDS
TTCATCGGTGAGTGGAGGAG+AGG 0.616967 3:-100408398 MsG0380017762.01.T01:CDS
TGGATTCGTACTCCTGGGAG+GGG 0.619234 3:+100407252 None:intergenic
CGAGAAACCGGTGTTTGGTG+AGG 0.619296 3:-100408332 MsG0380017762.01.T01:CDS
AGTTATTCTGAACAACGAGA+TGG 0.619852 3:-100408541 MsG0380017762.01.T01:CDS
AGGAAAACCTGAAGGATGGG+GGG 0.620328 3:+100408152 None:intergenic
TGCCATATTGGCAAATGGAG+CGG 0.623853 3:-100407293 MsG0380017762.01.T01:CDS
ATAAATGAGTGACTCCACTC+AGG 0.632662 3:-100403630 MsG0380017762.01.T01:three_prime_UTR
CCACTATCCTCACCAAACAC+CGG 0.635056 3:+100408325 None:intergenic
TCGGTAAATTCATCGGTGAG+TGG 0.635101 3:-100408406 MsG0380017762.01.T01:CDS
GAGGGGAACCAAATGTCTGA+AGG 0.638577 3:+100407269 None:intergenic
CTGGCAGACAGACTCTGGAA+GGG 0.639193 3:+100403727 None:intergenic
CATTTGCCAATATGGCAGGA+AGG 0.645218 3:+100407299 None:intergenic
TAAATGGGCAAGTAAAGGTG+TGG 0.649679 3:-100406978 MsG0380017762.01.T01:CDS
TCACAGTCTCAAACTCCAAG+TGG 0.649969 3:-100408244 MsG0380017762.01.T01:CDS
ACCGATGACCTCCTCCGCGG+TGG 0.650721 3:+100408424 None:intergenic
GTAAATTCATCGGTGAGTGG+AGG 0.651296 3:-100408403 MsG0380017762.01.T01:CDS
CACAGTCTCAAACTCCAAGT+GGG 0.653516 3:-100408243 MsG0380017762.01.T01:CDS
CAGTCTGATGAAGTAGACAA+AGG 0.654264 3:-100407082 MsG0380017762.01.T01:CDS
AAAAGGCCGAGTTAAAGGGA+AGG 0.661454 3:-100406199 MsG0380017762.01.T01:CDS
TTAGGACAGAAAGAACCTCA+AGG 0.665779 3:-100406937 MsG0380017762.01.T01:CDS
AGTGGATTCGTACTCCTGGG+AGG 0.672288 3:+100407250 None:intergenic
GCTTTGTATGCACACCTGAG+TGG 0.679065 3:+100403616 None:intergenic
TGATATAATTGAAGGGAACG+CGG 0.688428 3:-100404674 MsG0380017762.01.T01:CDS
GGCATGGACTCAATTCAACA+TGG 0.696024 3:-100403825 MsG0380017762.01.T01:CDS
TATAGCAAAGCTACTCCCCG+AGG 0.719005 3:-100406249 MsG0380017762.01.T01:CDS
TTTACCGATGACCTCCTCCG+CGG 0.727015 3:+100408421 None:intergenic
AGTACGAATCCACTTAACAA+CGG 0.729752 3:-100407241 MsG0380017762.01.T01:CDS
CCTGGGCTTAATGAACCTCG+GGG 0.733725 3:+100406234 None:intergenic
ACAATCCGAGCACGTCACAG+AGG 0.749424 3:-100408483 MsG0380017762.01.T01:CDS
TATTCTGTTAGGATATGATG+AGG 0.756116 3:-100408518 MsG0380017762.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAAAATTAAAACTTTA+GGG - Chr3:100404428-100404447 MsG0380017762.01.T01:intron 10.0%
!! TATACTAAAATTAAAACTTT+AGG - Chr3:100404427-100404446 MsG0380017762.01.T01:intron 10.0%
!! TACTAAAATTAAAACTTTAG+GGG - Chr3:100404429-100404448 MsG0380017762.01.T01:intron 15.0%
!! TATGAATATGTTCTTAATTT+GGG - Chr3:100406390-100406409 MsG0380017762.01.T01:intron 15.0%
!! TTATGAATATGTTCTTAATT+TGG - Chr3:100406389-100406408 MsG0380017762.01.T01:intron 15.0%
!! TTTATTACTTACTATATTCT+TGG - Chr3:100407241-100407260 MsG0380017762.01.T01:CDS 15.0%
!!! AAAAAAGTATAGCATAAAAT+TGG + Chr3:100404055-100404074 None:intergenic 15.0%
!!! ACTTTAAAACCATATTTTAA+AGG - Chr3:100404151-100404170 MsG0380017762.01.T01:intron 15.0%
!!! ATTTTTTAACATTTCAATTG+TGG + Chr3:100404649-100404668 None:intergenic 15.0%
!!! CTTTAAAACCATATTTTAAA+GGG - Chr3:100404152-100404171 MsG0380017762.01.T01:intron 15.0%
!!! GAACATATTTAATTTAACAA+TGG + Chr3:100406894-100406913 None:intergenic 15.0%
!!! TACATTCATTTTTTTTTTGT+TGG + Chr3:100408264-100408283 None:intergenic 15.0%
!!! TATTTTCATTACAAAAAAAG+CGG + Chr3:100407933-100407952 None:intergenic 15.0%
!! AAAGAGTAATAAAAAACAAG+AGG - Chr3:100405371-100405390 MsG0380017762.01.T01:intron 20.0%
!! AATTAAATGCATTATCCATT+TGG + Chr3:100408051-100408070 None:intergenic 20.0%
!! CCATTTCTCAATATATAAAT+GGG - Chr3:100405140-100405159 MsG0380017762.01.T01:intron 20.0%
!! TAGATACTCACATTATTAAA+AGG - Chr3:100406096-100406115 MsG0380017762.01.T01:intron 20.0%
!! TCCATTTCTCAATATATAAA+TGG - Chr3:100405139-100405158 MsG0380017762.01.T01:intron 20.0%
!!! AGATGACTTTCTATATTTTT+AGG + Chr3:100408551-100408570 None:intergenic 20.0%
!!! AGTACAAAATTGTTCTAAAA+TGG - Chr3:100407377-100407396 MsG0380017762.01.T01:intron 20.0%
!!! AGTTTTAACTTTGAAAAAGA+AGG + Chr3:100404026-100404045 None:intergenic 20.0%
!!! ATATGGAATTTTCAATCAAA+TGG + Chr3:100407268-100407287 None:intergenic 20.0%
!!! ATATTACAAAGCTTTTTATC+TGG - Chr3:100407830-100407849 MsG0380017762.01.T01:intron 20.0%
!!! ATGAATATGTTCTTAATTTG+GGG - Chr3:100406391-100406410 MsG0380017762.01.T01:intron 20.0%
!!! ATGTTTTTTGTAAGAATGTA+AGG - Chr3:100407722-100407741 MsG0380017762.01.T01:intron 20.0%
!!! GATTTCTTTGATGATATATT+TGG - Chr3:100403856-100403875 MsG0380017762.01.T01:intron 20.0%
!!! GTAAAATTAGTTTACATTGA+CGG - Chr3:100404210-100404229 MsG0380017762.01.T01:intron 20.0%
!!! TATGGAATTTTCAATCAAAT+GGG + Chr3:100407267-100407286 None:intergenic 20.0%
!!! TTGATGATTAAATTATGTGA+TGG - Chr3:100406776-100406795 MsG0380017762.01.T01:CDS 20.0%
!!! TTTTAGAACAATTTTGTACT+TGG + Chr3:100407377-100407396 None:intergenic 20.0%
! AAAAAGTTTGTCTCTTTCAT+AGG - Chr3:100407627-100407646 MsG0380017762.01.T01:intron 25.0%
! AAATTCCTTAACTGAATCTA+TGG + Chr3:100407337-100407356 None:intergenic 25.0%
! AAGGTAAAAATTTCAACACT+CGG + Chr3:100406916-100406935 None:intergenic 25.0%
! AAGTATAGCATAAAATTGGT+TGG + Chr3:100404051-100404070 None:intergenic 25.0%
! AATCATAAAGCTCTATAGTT+TGG + Chr3:100408162-100408181 None:intergenic 25.0%
! ACTCTTATTAAAGATGTTCT+TGG - Chr3:100405498-100405517 MsG0380017762.01.T01:intron 25.0%
! AGATTTATTTCAATTCTCAC+AGG - Chr3:100406195-100406214 MsG0380017762.01.T01:CDS 25.0%
! ATATATAAATGGGCAAGTAA+AGG - Chr3:100405150-100405169 MsG0380017762.01.T01:intron 25.0%
! ATCATAAAGCTCTATAGTTT+GGG + Chr3:100408161-100408180 None:intergenic 25.0%
! ATTACTTCTAATTAAGGTCT+TGG + Chr3:100404622-100404641 None:intergenic 25.0%
! ATTCTCAACTGTATGAATAT+GGG + Chr3:100406345-100406364 None:intergenic 25.0%
! ATTGCTAAAAGCTAACAAAA+TGG - Chr3:100404523-100404542 MsG0380017762.01.T01:intron 25.0%
! CATCTTTAATAAGAGTTTGA+CGG + Chr3:100405494-100405513 None:intergenic 25.0%
! CCCATTTATATATTGAGAAA+TGG + Chr3:100405143-100405162 None:intergenic 25.0%
! CTAGAAACATATACCAAAAT+TGG + Chr3:100408109-100408128 None:intergenic 25.0%
! CTCTTGTTGATATAATTGAA+GGG - Chr3:100407452-100407471 MsG0380017762.01.T01:intron 25.0%
! CTTTGAATTCTTGAATTTCT+TGG + Chr3:100407021-100407040 None:intergenic 25.0%
! GAAATGGAATTTATCATTAC+TGG + Chr3:100405127-100405146 None:intergenic 25.0%
! GGACATATTACTTCTAATTA+AGG + Chr3:100404628-100404647 None:intergenic 25.0%
! GTTTACAGTTGTTTAGTTAT+TGG - Chr3:100406167-100406186 MsG0380017762.01.T01:CDS 25.0%
! TAAAACCATAGATTCAGTTA+AGG - Chr3:100407329-100407348 MsG0380017762.01.T01:intron 25.0%
! TAAATTCAATCAATGATCAG+TGG + Chr3:100406726-100406745 None:intergenic 25.0%
! TAAGTCTATATTTACAATGC+AGG - Chr3:100408284-100408303 MsG0380017762.01.T01:CDS 25.0%
! TACATACATATCTGCATATT+TGG - Chr3:100407972-100407991 MsG0380017762.01.T01:intron 25.0%
! TGATGTTTAAATAGATTCCA+AGG + Chr3:100404592-100404611 None:intergenic 25.0%
! TTAGCATAATATGTTTCTCT+TGG - Chr3:100406494-100406513 MsG0380017762.01.T01:intron 25.0%
! TTATCATTACTGGTATTATC+AGG + Chr3:100405117-100405136 None:intergenic 25.0%
! TTATCCACATAAACACATAA+AGG + Chr3:100406935-100406954 None:intergenic 25.0%
! TTGATAAAAATGAAACGTGT+AGG + Chr3:100407058-100407077 None:intergenic 25.0%
! TTTACCTTTATGTGTTTATG+TGG - Chr3:100406928-100406947 MsG0380017762.01.T01:CDS 25.0%
! TTTGAAAAAGAAGGTGAAAA+AGG + Chr3:100404017-100404036 None:intergenic 25.0%
!! AAACTCTGTAGATATGTTTT+TGG - Chr3:100406745-100406764 MsG0380017762.01.T01:CDS 25.0%
!! AACTATAGAGCTTTATGATT+TGG - Chr3:100408162-100408181 MsG0380017762.01.T01:CDS 25.0%
!! ACAGTAAAGAGACATTTTTA+AGG + Chr3:100406537-100406556 None:intergenic 25.0%
!! ATTTTACAGGTACTATGTTT+GGG - Chr3:100407586-100407605 MsG0380017762.01.T01:intron 25.0%
!! ATTTTACATTCATCGTGTAT+CGG + Chr3:100404259-100404278 None:intergenic 25.0%
!! CTGAAACAATTTTACACAAA+GGG - Chr3:100406602-100406621 MsG0380017762.01.T01:CDS 25.0%
!! GATTTTGTTCTTATTGCAAT+TGG - Chr3:100408435-100408454 MsG0380017762.01.T01:CDS 25.0%
!! TAACCCTTTTTACAAATATC+CGG + Chr3:100406698-100406717 None:intergenic 25.0%
!! TATTTTACAGGTACTATGTT+TGG - Chr3:100407585-100407604 MsG0380017762.01.T01:intron 25.0%
!! TGAATATGTTCTTAATTTGG+GGG - Chr3:100406392-100406411 MsG0380017762.01.T01:intron 25.0%
!! TTCTTTGATGATATATTTGG+AGG - Chr3:100403859-100403878 MsG0380017762.01.T01:intron 25.0%
!!! CATGAATTGATTTTACCTTT+TGG + Chr3:100408197-100408216 None:intergenic 25.0%
!!! GGTTTTAAAGTGAATATATG+TGG + Chr3:100404142-100404161 None:intergenic 25.0%
!!! TAACTGAATCTATGGTTTTA+CGG + Chr3:100407329-100407348 None:intergenic 25.0%
!!! TCTGAAACAATTTTACACAA+AGG - Chr3:100406601-100406620 MsG0380017762.01.T01:CDS 25.0%
!!! TTGGTATATGTTTCTAGTTT+TGG - Chr3:100408112-100408131 MsG0380017762.01.T01:intron 25.0%
AAAAGAAAAGGAAAACCTGA+AGG + Chr3:100403992-100404011 None:intergenic 30.0%
AAAATGATAGTCCTAAGGAA+TGG - Chr3:100405289-100405308 MsG0380017762.01.T01:CDS 30.0%
AACTGTATGAATATGGGATT+TGG + Chr3:100406339-100406358 None:intergenic 30.0%
AAGATACAACAATGGTCTAA+AGG - Chr3:100407139-100407158 MsG0380017762.01.T01:CDS 30.0%
ATATCAGCAAATGAAATGTC+AGG + Chr3:100406829-100406848 None:intergenic 30.0%
ATTCTGCTGTGACAAATTAT+TGG + Chr3:100406284-100406303 None:intergenic 30.0%
CAAATCATTACATCTCTGTT+CGG - Chr3:100405629-100405648 MsG0380017762.01.T01:intron 30.0%
CAATCTGCAAATTTCAAATC+AGG + Chr3:100406961-100406980 None:intergenic 30.0%
CATATTCATACAGTTGAGAA+TGG - Chr3:100406344-100406363 MsG0380017762.01.T01:CDS 30.0%
CATTCTCAACTGTATGAATA+TGG + Chr3:100406346-100406365 None:intergenic 30.0%
CCTCTTGTTGATATAATTGA+AGG - Chr3:100407451-100407470 MsG0380017762.01.T01:intron 30.0%
CCTTCAATTATATCAACAAG+AGG + Chr3:100407454-100407473 None:intergenic 30.0%
CTCATGTTGGTATTAAGTAT+TGG + Chr3:100408354-100408373 None:intergenic 30.0%
GAACAGAGATGTAATGATTT+GGG + Chr3:100405630-100405649 None:intergenic 30.0%
GAAGAACCATTGTATGTTAT+AGG + Chr3:100405348-100405367 None:intergenic 30.0%
GATAGTCCTATAACATACAA+TGG - Chr3:100405339-100405358 MsG0380017762.01.T01:intron 30.0%
GCTTTAGCATCATATGTAAT+AGG + Chr3:100405528-100405547 None:intergenic 30.0%
GGTAAAAACAGTAAGAAACA+AGG - Chr3:100405650-100405669 MsG0380017762.01.T01:intron 30.0%
GTGAAAAAGGTGAAAAGAAA+AGG + Chr3:100404004-100404023 None:intergenic 30.0%
TAAGAACAAAATCTATTCCC+TGG + Chr3:100408428-100408447 None:intergenic 30.0%
TATTCCTATGAATCCAAAGA+AGG - Chr3:100405820-100405839 MsG0380017762.01.T01:intron 30.0%
TATTCTGTTAGGATATGATG+AGG - Chr3:100403615-100403634 MsG0380017762.01.T01:three_prime_UTR 30.0%
TGTTAACAGGCAAGAAAATA+TGG + Chr3:100407285-100407304 None:intergenic 30.0%
TTCCACAATCAGTAAAAACA+AGG - Chr3:100405404-100405423 MsG0380017762.01.T01:intron 30.0%
TTGACAAGAAGATACAACAA+TGG - Chr3:100407131-100407150 MsG0380017762.01.T01:CDS 30.0%
TTTATTTCAATTCTCACAGG+TGG - Chr3:100406198-100406217 MsG0380017762.01.T01:CDS 30.0%
TTTGGTATGAGACAAAGTAT+AGG - Chr3:100407990-100408009 MsG0380017762.01.T01:intron 30.0%
! AATCTTATCTTTTGTCCTTG+AGG + Chr3:100405214-100405233 None:intergenic 30.0%
! AGAACAATTTTGTACTTGGA+TGG + Chr3:100407373-100407392 None:intergenic 30.0%
! ATGATTTTAAGCCAACTTAC+AGG - Chr3:100404992-100405011 MsG0380017762.01.T01:intron 30.0%
! CAAAGTACCTTTATTCATGA+TGG + Chr3:100407406-100407425 None:intergenic 30.0%
! CATGCTTTATTGTTGTTAAC+AGG + Chr3:100407298-100407317 None:intergenic 30.0%
! CTTATAATAGTGTCTGAGAT+AGG + Chr3:100406631-100406650 None:intergenic 30.0%
! GTTAAGGAATTTTAGATCCT+TGG - Chr3:100407345-100407364 MsG0380017762.01.T01:intron 30.0%
! TACAAAGCTTTTTATCTGGT+AGG - Chr3:100407834-100407853 MsG0380017762.01.T01:intron 30.0%
! TATAGGACTATCATTTTGTG+TGG + Chr3:100405331-100405350 None:intergenic 30.0%
! TATATTTCTGTACACCATGT+AGG - Chr3:100407105-100407124 MsG0380017762.01.T01:CDS 30.0%
! TCTAGAATCTTGCTTGAAAT+TGG - Chr3:100407655-100407674 MsG0380017762.01.T01:intron 30.0%
! TGTTTAGCTATTGCCAATTT+TGG - Chr3:100408093-100408112 MsG0380017762.01.T01:intron 30.0%
! TTCAGTGCATGGTATTTTAT+TGG + Chr3:100407784-100407803 None:intergenic 30.0%
!! ACGATAACTTTTTCTCATGT+TGG + Chr3:100408367-100408386 None:intergenic 30.0%
!! ATTGATTTTACCTTTTGGAC+TGG + Chr3:100408192-100408211 None:intergenic 30.0%
!! CATCATGAATAAAGGTACTT+TGG - Chr3:100407404-100407423 MsG0380017762.01.T01:intron 30.0%
!! CCATATTTTAAAGGGAATGA+TGG - Chr3:100404160-100404179 MsG0380017762.01.T01:intron 30.0%
!! CCATCATTCCCTTTAAAATA+TGG + Chr3:100404163-100404182 None:intergenic 30.0%
!! TACTGGTATAAGTTTTATGC+TGG - Chr3:100407748-100407767 MsG0380017762.01.T01:intron 30.0%
!! TTGATTTTAACGACGTGTTT+GGG - Chr3:100403683-100403702 MsG0380017762.01.T01:three_prime_UTR 30.0%
!!! TACCTTGTTTTTACTGATTG+TGG + Chr3:100405409-100405428 None:intergenic 30.0%
AAAAGGAAAACCTGAAGGAT+GGG + Chr3:100403987-100404006 None:intergenic 35.0%
AAACAAGGTAAAGCTGTCTT+TGG - Chr3:100405665-100405684 MsG0380017762.01.T01:intron 35.0%
AAATGATATGGTCTACACTC+TGG + Chr3:100405440-100405459 None:intergenic 35.0%
AAGCTAACAAAATGGCAATG+TGG - Chr3:100404531-100404550 MsG0380017762.01.T01:intron 35.0%
AATAGACTTTGCCTGTAAGT+TGG + Chr3:100405006-100405025 None:intergenic 35.0%
AATTTGAATACGCTCGAATG+AGG - Chr3:100406127-100406146 MsG0380017762.01.T01:CDS 35.0%
ACAACAATGGTCTAAAGGAA+AGG - Chr3:100407144-100407163 MsG0380017762.01.T01:CDS 35.0%
AGTACGAATCCACTTAACAA+CGG - Chr3:100404892-100404911 MsG0380017762.01.T01:intron 35.0%
AGTATAGGATGCAATTGATC+TGG - Chr3:100408005-100408024 MsG0380017762.01.T01:intron 35.0%
AGTTATTCTGAACAACGAGA+TGG - Chr3:100403592-100403611 MsG0380017762.01.T01:three_prime_UTR 35.0%
ATACACAAAGTTCCCTAAGA+AGG + Chr3:100404410-100404429 None:intergenic 35.0%
ATCATATGCACATTGACAGA+AGG - Chr3:100404561-100404580 MsG0380017762.01.T01:CDS 35.0%
ATGGCTTCCATCATGAATAA+AGG - Chr3:100407396-100407415 MsG0380017762.01.T01:intron 35.0%
ATTATTGGCAGCCATATCAA+TGG + Chr3:100406269-100406288 None:intergenic 35.0%
CAATGTATGTCTAGCACAAT+TGG - Chr3:100404320-100404339 MsG0380017762.01.T01:intron 35.0%
CACTCAAAATGATAGTCCTA+AGG - Chr3:100405284-100405303 MsG0380017762.01.T01:CDS 35.0%
CGAACAGAGATGTAATGATT+TGG + Chr3:100405631-100405650 None:intergenic 35.0%
CTAAGAAGGTGAGAATACAA+GGG + Chr3:100404396-100404415 None:intergenic 35.0%
CTTGTATTCTCACCTTCTTA+GGG - Chr3:100404395-100404414 MsG0380017762.01.T01:intron 35.0%
GCTGATATCCAAGATATAGA+TGG - Chr3:100406559-100406578 MsG0380017762.01.T01:CDS 35.0%
GGTTATAAGTACAAGCAGAA+AGG - Chr3:100406031-100406050 MsG0380017762.01.T01:intron 35.0%
GTAAGAATGTAAGGAACTAC+TGG - Chr3:100407731-100407750 MsG0380017762.01.T01:intron 35.0%
GTCTATATTTACAATGCAGG+AGG - Chr3:100408287-100408306 MsG0380017762.01.T01:CDS 35.0%
TCTAATTAAGGTCTTGGCAT+TGG + Chr3:100404616-100404635 None:intergenic 35.0%
TCTTCCTTCTTTGGATTCAT+AGG + Chr3:100405827-100405846 None:intergenic 35.0%
TCTTTCTATCTTTGTGTGTG+AGG - Chr3:100405694-100405713 MsG0380017762.01.T01:intron 35.0%
TGATATAATTGAAGGGAACG+CGG - Chr3:100407459-100407478 MsG0380017762.01.T01:intron 35.0%
TGGCCGGATATTTGTAAAAA+GGG - Chr3:100406692-100406711 MsG0380017762.01.T01:CDS 35.0%
TTCTGTCAATGTGCATATGA+TGG + Chr3:100404562-100404581 None:intergenic 35.0%
! ATAATAGTGTCTGAGATAGG+TGG + Chr3:100406628-100406647 None:intergenic 35.0%
! ATAGTTTGGGTTACAAGCTA+AGG + Chr3:100408148-100408167 None:intergenic 35.0%
! ATTATATCAACAAGAGGCAC+AGG + Chr3:100407448-100407467 None:intergenic 35.0%
! ATTGACAGAAGGATTTTCCT+TGG - Chr3:100404572-100404591 MsG0380017762.01.T01:CDS 35.0%
! CAAAAGACAGATTCTAAGAG+AGG - Chr3:100405854-100405873 MsG0380017762.01.T01:CDS 35.0%
! CTTAGGACTATCATTTTGAG+TGG + Chr3:100405286-100405305 None:intergenic 35.0%
! GCATTATCCATTTGGAACAA+AGG + Chr3:100408043-100408062 None:intergenic 35.0%
! TGCTTTTCATCTTCCTTCTT+TGG + Chr3:100405836-100405855 None:intergenic 35.0%
!! GTTGATTTTAACGACGTGTT+TGG - Chr3:100403682-100403701 MsG0380017762.01.T01:three_prime_UTR 35.0%
!! TGATTTTAACGACGTGTTTG+GGG - Chr3:100403684-100403703 MsG0380017762.01.T01:three_prime_UTR 35.0%
!! TGTTGGTATTAAGTATTGGC+AGG + Chr3:100408350-100408369 None:intergenic 35.0%
AAAGGAAAACCTGAAGGATG+GGG + Chr3:100403986-100404005 None:intergenic 40.0%
AAAGTCGAGAGAAGCAAACA+TGG - Chr3:100405775-100405794 MsG0380017762.01.T01:intron 40.0%
ACAGATGAGATAGTCTCTGA+TGG - Chr3:100405567-100405586 MsG0380017762.01.T01:intron 40.0%
AGCCATATCAATGGTCTCTA+CGG + Chr3:100406260-100406279 None:intergenic 40.0%
ATAAATGAGTGACTCCACTC+AGG - Chr3:100408503-100408522 MsG0380017762.01.T01:CDS 40.0%
CAACGAGATGGTATTCTGTT+AGG - Chr3:100403604-100403623 MsG0380017762.01.T01:three_prime_UTR 40.0%
CAAGAGACTATGATCACATC+AGG + Chr3:100404720-100404739 None:intergenic 40.0%
CAATGGTCTAAAGGAAAGGA+AGG - Chr3:100407148-100407167 MsG0380017762.01.T01:CDS 40.0%
CAGAATGATATCTCAGCATC+AGG - Chr3:100406298-100406317 MsG0380017762.01.T01:CDS 40.0%
CAGGCAAAGTCTATTATCGA+AGG - Chr3:100405011-100405030 MsG0380017762.01.T01:intron 40.0%
CAGTCTGATGAAGTAGACAA+AGG - Chr3:100405051-100405070 MsG0380017762.01.T01:intron 40.0%
CCACATGGATGTGGTAATTA+AGG + Chr3:100406675-100406694 None:intergenic 40.0%
CCAGATAAGTTGCAGCAAAA+GGG - Chr3:100407520-100407539 MsG0380017762.01.T01:intron 40.0%
CCTAAGAAGGTGAGAATACA+AGG + Chr3:100404397-100404416 None:intergenic 40.0%
CCTTAATTACCACATCCATG+TGG - Chr3:100406672-100406691 MsG0380017762.01.T01:CDS 40.0%
CCTTGTATTCTCACCTTCTT+AGG - Chr3:100404394-100404413 MsG0380017762.01.T01:intron 40.0%
CGACACTACCATCTATATCT+TGG + Chr3:100406570-100406589 None:intergenic 40.0%
CTTCTTGTCAATGACCTACA+TGG + Chr3:100407122-100407141 None:intergenic 40.0%
CTTTGACCTTCCCTTTAACT+CGG + Chr3:100405943-100405962 None:intergenic 40.0%
CTTTGTCTACTTCATCAGAC+TGG + Chr3:100405053-100405072 None:intergenic 40.0%
GAAAAGGAAAACCTGAAGGA+TGG + Chr3:100403988-100404007 None:intergenic 40.0%
GACACAAAATCTCGACTTCA+GGG - Chr3:100406010-100406029 MsG0380017762.01.T01:intron 40.0%
GAGGTCATCGGTAAATTCAT+CGG - Chr3:100403720-100403739 MsG0380017762.01.T01:three_prime_UTR 40.0%
GAGGTTCTTTCTGTCCTAAA+AGG + Chr3:100405195-100405214 None:intergenic 40.0%
GGAATACCGTGAAATTCTCA+TGG + Chr3:100406873-100406892 None:intergenic 40.0%
GTATGTCTAGCACAATTGGT+CGG - Chr3:100404324-100404343 MsG0380017762.01.T01:intron 40.0%
GTCCTTCCATGAGAATTTCA+CGG - Chr3:100406864-100406883 MsG0380017762.01.T01:CDS 40.0%
GTGGCCGGATATTTGTAAAA+AGG - Chr3:100406691-100406710 MsG0380017762.01.T01:CDS 40.0%
TAAATGGGCAAGTAAAGGTG+TGG - Chr3:100405155-100405174 MsG0380017762.01.T01:intron 40.0%
TACCGTAGAGACCATTGATA+TGG - Chr3:100406255-100406274 MsG0380017762.01.T01:CDS 40.0%
TACCGTGAAATTCTCATGGA+AGG + Chr3:100406869-100406888 None:intergenic 40.0%
TACGGTATAGATCTCCTTCT+TGG + Chr3:100406242-100406261 None:intergenic 40.0%
TATTGACAGTTATCACAGCG+TGG + Chr3:100405724-100405743 None:intergenic 40.0%
TATTTACAATGCAGGAGGCA+TGG - Chr3:100408292-100408311 MsG0380017762.01.T01:CDS 40.0%
TCAAGTGCCTTTGTTCCAAA+TGG - Chr3:100408033-100408052 MsG0380017762.01.T01:intron 40.0%
TCCAGATAAGTTGCAGCAAA+AGG - Chr3:100407519-100407538 MsG0380017762.01.T01:intron 40.0%
TGGACTCAATTCAACATGGT+TGG - Chr3:100408312-100408331 MsG0380017762.01.T01:CDS 40.0%
TTAGGACAGAAAGAACCTCA+AGG - Chr3:100405196-100405215 MsG0380017762.01.T01:intron 40.0%
TTGGAAGGAGTAAACATCAG+AGG + Chr3:100404800-100404819 None:intergenic 40.0%
TTTACAAATATCCGGCCACA+TGG + Chr3:100406690-100406709 None:intergenic 40.0%
TTTGTACTTGGATGGAACCA+AGG + Chr3:100407365-100407384 None:intergenic 40.0%
! AAGGTACTTTGGCCAAATTG+TGG - Chr3:100407415-100407434 MsG0380017762.01.T01:intron 40.0%
! ATTTGGTAGTCCAGTCCAAA+AGG - Chr3:100408179-100408198 MsG0380017762.01.T01:CDS 40.0%
! CGAGATTTTGTGTCGAGTTT+GGG + Chr3:100406004-100406023 None:intergenic 40.0%
! TCGAGATTTTGTGTCGAGTT+TGG + Chr3:100406005-100406024 None:intergenic 40.0%
! TGAAGTATTATCCCAAGACG+AGG - Chr3:100406979-100406998 MsG0380017762.01.T01:CDS 40.0%
! TTAAGTGGATTCGTACTCCT+GGG + Chr3:100404889-100404908 None:intergenic 40.0%
!! GATTTTAACGACGTGTTTGG+GGG - Chr3:100403685-100403704 MsG0380017762.01.T01:three_prime_UTR 40.0%
AAAAGGCCGAGTTAAAGGGA+AGG - Chr3:100405934-100405953 MsG0380017762.01.T01:intron 45.0%
AAGGAAAACCTGAAGGATGG+GGG + Chr3:100403985-100404004 None:intergenic 45.0%
AATTACCACATCCATGTGGC+CGG - Chr3:100406676-100406695 MsG0380017762.01.T01:CDS 45.0%
ACAAGCAGAAAGGAGCTGTA+AGG - Chr3:100406041-100406060 MsG0380017762.01.T01:intron 45.0%
ATCTCCTTCTTGGACTGTTC+AGG + Chr3:100406232-100406251 None:intergenic 45.0%
ATGGGAAAAGGCCGAGTTAA+AGG - Chr3:100405929-100405948 MsG0380017762.01.T01:intron 45.0%
ATTAAGCCCAGGCAGAAGTA+TGG - Chr3:100405910-100405929 MsG0380017762.01.T01:CDS 45.0%
CAAGCAGAAAGGAGCTGTAA+GGG - Chr3:100406042-100406061 MsG0380017762.01.T01:intron 45.0%
CACAGTCTCAAACTCCAAGT+GGG - Chr3:100403890-100403909 MsG0380017762.01.T01:intron 45.0%
CATTTGCCAATATGGCAGGA+AGG + Chr3:100404837-100404856 None:intergenic 45.0%
CGACACAAAATCTCGACTTC+AGG - Chr3:100406009-100406028 MsG0380017762.01.T01:intron 45.0%
CGATGAATCTGGTTGAGCTT+TGG + Chr3:100405466-100405485 None:intergenic 45.0%
CTTCCTGCCATATTGGCAAA+TGG - Chr3:100404835-100404854 MsG0380017762.01.T01:intron 45.0%
GAAGGCTGATCAGTCGAATT+TGG + Chr3:100404819-100404838 None:intergenic 45.0%
GCTGATCAGTCGAATTTGGA+AGG + Chr3:100404815-100404834 None:intergenic 45.0%
GGAGTTAGGAGGAGAAGAAA+AGG - Chr3:100403829-100403848 MsG0380017762.01.T01:CDS 45.0%
GGATATGATGAGGATGAGAG+TGG - Chr3:100403625-100403644 MsG0380017762.01.T01:three_prime_UTR 45.0%
GGCATGGACTCAATTCAACA+TGG - Chr3:100408308-100408327 MsG0380017762.01.T01:CDS 45.0%
GTAAATTCATCGGTGAGTGG+AGG - Chr3:100403730-100403749 MsG0380017762.01.T01:three_prime_UTR 45.0%
GTCAGTGACAATCCATTCCT+TGG + Chr3:100405259-100405278 None:intergenic 45.0%
GTTTGCTTCTCTCGACTTTC+TGG + Chr3:100405774-100405793 None:intergenic 45.0%
TACTTTGGCCAAATTGTGGC+TGG - Chr3:100407419-100407438 MsG0380017762.01.T01:intron 45.0%
TCACAGTCTCAAACTCCAAG+TGG - Chr3:100403889-100403908 MsG0380017762.01.T01:intron 45.0%
TCACTGACGATCCATTCCTT+AGG + Chr3:100405303-100405322 None:intergenic 45.0%
TCGGTAAATTCATCGGTGAG+TGG - Chr3:100403727-100403746 MsG0380017762.01.T01:three_prime_UTR 45.0%
TGATCCTGAACAGTCCAAGA+AGG - Chr3:100406225-100406244 MsG0380017762.01.T01:CDS 45.0%
TGCCATATTGGCAAATGGAG+CGG - Chr3:100404840-100404859 MsG0380017762.01.T01:intron 45.0%
TGGGAAAAGGCCGAGTTAAA+GGG - Chr3:100405930-100405949 MsG0380017762.01.T01:intron 45.0%
! AACGGCATTGCTGCTTCAAA+TGG - Chr3:100404910-100404929 MsG0380017762.01.T01:intron 45.0%
! AAGTAAAGGTGTGGTGCCTT+TGG - Chr3:100405164-100405183 MsG0380017762.01.T01:intron 45.0%
! CCCTTTTGCTGCAACTTATC+TGG + Chr3:100407523-100407542 None:intergenic 45.0%
! CTTTTCCCATACTTCTGCCT+GGG + Chr3:100405919-100405938 None:intergenic 45.0%
! GAGCTTTGGCGGAAATGATA+TGG + Chr3:100405452-100405471 None:intergenic 45.0%
! GGTCTGTGCAATTCAAGTTC+AGG + Chr3:100407912-100407931 None:intergenic 45.0%
! GTTAAGTGGATTCGTACTCC+TGG + Chr3:100404890-100404909 None:intergenic 45.0%
! TGAATCTGGTTGAGCTTTGG+CGG + Chr3:100405463-100405482 None:intergenic 45.0%
! TTAAGCCCAGGCAGAAGTAT+GGG - Chr3:100405911-100405930 MsG0380017762.01.T01:CDS 45.0%
!! ATTGGTGTTGAACACCCACT+TGG + Chr3:100403907-100403926 None:intergenic 45.0%
!! TTGGTGAGGATAGTGGAGTT+AGG - Chr3:100403815-100403834 MsG0380017762.01.T01:CDS 45.0%
AATATCCGGCCACATGGATG+TGG + Chr3:100406684-100406703 None:intergenic 50.0%
ACAATTGGTCGGTGCGCAAT+GGG - Chr3:100404335-100404354 MsG0380017762.01.T01:intron 50.0%
ACAGGCTTCCAGCCACAATT+TGG + Chr3:100407430-100407449 None:intergenic 50.0%
AGGAAAACCTGAAGGATGGG+GGG + Chr3:100403984-100404003 None:intergenic 50.0%
CCACTATCCTCACCAAACAC+CGG + Chr3:100403811-100403830 None:intergenic 50.0%
CTGGAAGGGAGCTACTCATA+AGG + Chr3:100408395-100408414 None:intergenic 50.0%
GAAGCAAGTGGTTGAAGAGC+AGG + Chr3:100403955-100403974 None:intergenic 50.0%
GAGGGGAACCAAATGTCTGA+AGG + Chr3:100404867-100404886 None:intergenic 50.0%
GATCAGCCTTCCTGCCATAT+TGG - Chr3:100404828-100404847 MsG0380017762.01.T01:intron 50.0%
GATTTCCTCTGTGACGTGCT+CGG + Chr3:100403658-100403677 None:intergenic 50.0%
GCAGCAATGCCGTTGTTAAG+TGG + Chr3:100404904-100404923 None:intergenic 50.0%
GCGCGATTAGATTCAGTGCA+TGG + Chr3:100407795-100407814 None:intergenic 50.0%
GCTCCATTTGCCAATATGGC+AGG + Chr3:100404841-100404860 None:intergenic 50.0%
GCTTTGTATGCACACCTGAG+TGG + Chr3:100408520-100408539 None:intergenic 50.0%
GTCCGCTCCATTTGCCAATA+TGG + Chr3:100404845-100404864 None:intergenic 50.0%
TATAGCAAAGCTACTCCCCG+AGG - Chr3:100405884-100405903 MsG0380017762.01.T01:CDS 50.0%
TGAGACGTCATCCTCGTCTT+GGG + Chr3:100406993-100407012 None:intergenic 50.0%
TGCCTGGGCTTAATGAACCT+CGG + Chr3:100405904-100405923 None:intergenic 50.0%
TGGACTAACTTGAGCAGCTG+TGG - Chr3:100406364-100406383 MsG0380017762.01.T01:CDS 50.0%
TGGAGGAGAGGAAGGTGAAA+CGG - Chr3:100403747-100403766 MsG0380017762.01.T01:three_prime_UTR 50.0%
! CCAGGCAGAAGTATGGGAAA+AGG - Chr3:100405917-100405936 MsG0380017762.01.T01:CDS 50.0%
! CCTTTTCCCATACTTCTGCC+TGG + Chr3:100405920-100405939 None:intergenic 50.0%
! TGCCTTTGGCGATGCCTTTT+AGG - Chr3:100405178-100405197 MsG0380017762.01.T01:intron 50.0%
!! GTCCTAAAAGGCATCGCCAA+AGG + Chr3:100405183-100405202 None:intergenic 50.0%
!! GTGAAACGGGTTGGTGTAGT+TGG - Chr3:100403761-100403780 MsG0380017762.01.T01:three_prime_UTR 50.0%
!! GTGAGGATAGTGGAGTTAGG+AGG - Chr3:100403818-100403837 MsG0380017762.01.T01:CDS 50.0%
AATGCTCGAGCGCCAAGGAA+TGG - Chr3:100405244-100405263 MsG0380017762.01.T01:intron 55.0%
ACAATCCGAGCACGTCACAG+AGG - Chr3:100403650-100403669 MsG0380017762.01.T01:three_prime_UTR 55.0%
ATTCCCTGGCAGACAGACTC+TGG + Chr3:100408414-100408433 None:intergenic 55.0%
CACAATTGGTCGGTGCGCAA+TGG - Chr3:100404334-100404353 MsG0380017762.01.T01:intron 55.0%
CCTGGGCTTAATGAACCTCG+GGG + Chr3:100405902-100405921 None:intergenic 55.0%
CTTCCAGAGTCTGTCTGCCA+GGG - Chr3:100408408-100408427 MsG0380017762.01.T01:CDS 55.0%
GAGAGCGAGAAACCGGTGTT+TGG - Chr3:100403796-100403815 MsG0380017762.01.T01:exon 55.0%
GAGAGGAAGGTGAAACGGGT+TGG - Chr3:100403752-100403771 MsG0380017762.01.T01:three_prime_UTR 55.0%
GCAGCAGCATCACGTCTCAT+TGG + Chr3:100403925-100403944 None:intergenic 55.0%
GCCTGGGCTTAATGAACCTC+GGG + Chr3:100405903-100405922 None:intergenic 55.0%
GGAGCGGACCTTCAGACATT+TGG - Chr3:100404856-100404875 MsG0380017762.01.T01:intron 55.0%
GGAGGAGAGGAAGGTGAAAC+GGG - Chr3:100403748-100403767 MsG0380017762.01.T01:three_prime_UTR 55.0%
GTGAGACGTCATCCTCGTCT+TGG + Chr3:100406994-100407013 None:intergenic 55.0%
GTGGATTCGTACTCCTGGGA+GGG + Chr3:100404885-100404904 None:intergenic 55.0%
TGACGGCTGCTCGATGAATC+TGG + Chr3:100405477-100405496 None:intergenic 55.0%
TGAGAAATGCTCGAGCGCCA+AGG - Chr3:100405239-100405258 MsG0380017762.01.T01:intron 55.0%
TGGATTCGTACTCCTGGGAG+GGG + Chr3:100404884-100404903 None:intergenic 55.0%
TTCATCGGTGAGTGGAGGAG+AGG - Chr3:100403735-100403754 MsG0380017762.01.T01:three_prime_UTR 55.0%
TTTACCGATGACCTCCTCCG+CGG + Chr3:100403715-100403734 None:intergenic 55.0%
! AGACATTTGGTTCCCCTCCC+AGG - Chr3:100404869-100404888 MsG0380017762.01.T01:intron 55.0%
! AGTGGATTCGTACTCCTGGG+AGG + Chr3:100404886-100404905 None:intergenic 55.0%
! CCGGTGTTTGGTGAGGATAG+TGG - Chr3:100403808-100403827 MsG0380017762.01.T01:exon 55.0%
! CGAGAAACCGGTGTTTGGTG+AGG - Chr3:100403801-100403820 MsG0380017762.01.T01:exon 55.0%
! CTGGCAGACAGACTCTGGAA+GGG + Chr3:100408409-100408428 None:intergenic 55.0%
!! AACACCGGTTTCTCGCTCTC+CGG + Chr3:100403796-100403815 None:intergenic 55.0%
CCCCGAGGTTCATTAAGCCC+AGG - Chr3:100405899-100405918 MsG0380017762.01.T01:CDS 60.0%
CCTGGCAGACAGACTCTGGA+AGG + Chr3:100408410-100408429 None:intergenic 60.0%
CCTTCCAGAGTCTGTCTGCC+AGG - Chr3:100408407-100408426 MsG0380017762.01.T01:CDS 60.0%
CTTCTCTCCCCCCATCCTTC+AGG - Chr3:100403974-100403993 MsG0380017762.01.T01:intron 60.0%
GGGGGGAGAGAAGAAGCAAG+TGG + Chr3:100403967-100403986 None:intergenic 60.0%
TCCACCGGAGAGCGAGAAAC+CGG - Chr3:100403789-100403808 MsG0380017762.01.T01:three_prime_UTR 60.0%
TCGGTGAGTGGAGGAGAGGA+AGG - Chr3:100403739-100403758 MsG0380017762.01.T01:three_prime_UTR 60.0%
! GTGTAGTTGGCCTCCTCCAC+CGG - Chr3:100403774-100403793 MsG0380017762.01.T01:three_prime_UTR 60.0%
ACCACCGCGGAGGAGGTCAT+CGG - Chr3:100403708-100403727 MsG0380017762.01.T01:three_prime_UTR 65.0%
ACGTGTTTGGGGGACCACCG+CGG - Chr3:100403695-100403714 MsG0380017762.01.T01:three_prime_UTR 65.0%
GGTTTCTCGCTCTCCGGTGG+AGG + Chr3:100403790-100403809 None:intergenic 65.0%
TTCTCGCTCTCCGGTGGAGG+AGG + Chr3:100403787-100403806 None:intergenic 65.0%
! ACCGGTTTCTCGCTCTCCGG+TGG + Chr3:100403793-100403812 None:intergenic 65.0%
ACCGATGACCTCCTCCGCGG+TGG + Chr3:100403712-100403731 None:intergenic 70.0%
TGTTTGGGGGACCACCGCGG+AGG - Chr3:100403698-100403717 MsG0380017762.01.T01:three_prime_UTR 70.0%
TTGGGGGACCACCGCGGAGG+AGG - Chr3:100403701-100403720 MsG0380017762.01.T01:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100403577 100408578 100403577 ID=MsG0380017762.01;Name=MsG0380017762.01
Chr3 mRNA 100403577 100408578 100403577 ID=MsG0380017762.01.T01;Parent=MsG0380017762.01;Name=MsG0380017762.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0.16|0.42|1|0.66|0.85|7|234|638
Chr3 exon 100403577 100403849 100403577 ID=MsG0380017762.01.T01:exon:13028;Parent=MsG0380017762.01.T01
Chr3 exon 100404561 100404737 100404561 ID=MsG0380017762.01.T01:exon:13027;Parent=MsG0380017762.01.T01
Chr3 exon 100405270 100405334 100405270 ID=MsG0380017762.01.T01:exon:13026;Parent=MsG0380017762.01.T01
Chr3 exon 100405836 100405938 100405836 ID=MsG0380017762.01.T01:exon:13025;Parent=MsG0380017762.01.T01
Chr3 exon 100406098 100406399 100406098 ID=MsG0380017762.01.T01:exon:13024;Parent=MsG0380017762.01.T01
Chr3 exon 100406510 100407321 100406510 ID=MsG0380017762.01.T01:exon:13023;Parent=MsG0380017762.01.T01
Chr3 exon 100408160 100408578 100408160 ID=MsG0380017762.01.T01:exon:13022;Parent=MsG0380017762.01.T01
Chr3 CDS 100408160 100408578 100408160 ID=MsG0380017762.01.T01:cds;Parent=MsG0380017762.01.T01
Chr3 CDS 100406510 100407321 100406510 ID=MsG0380017762.01.T01:cds;Parent=MsG0380017762.01.T01
Chr3 CDS 100406098 100406399 100406098 ID=MsG0380017762.01.T01:cds;Parent=MsG0380017762.01.T01
Chr3 CDS 100405836 100405938 100405836 ID=MsG0380017762.01.T01:cds;Parent=MsG0380017762.01.T01
Chr3 CDS 100405270 100405334 100405270 ID=MsG0380017762.01.T01:cds;Parent=MsG0380017762.01.T01
Chr3 CDS 100404561 100404737 100404561 ID=MsG0380017762.01.T01:cds;Parent=MsG0380017762.01.T01
Chr3 CDS 100403811 100403849 100403811 ID=MsG0380017762.01.T01:cds;Parent=MsG0380017762.01.T01
Chr3 three_prime_UTR 100403577 100403810 100403577 ID=MsG0380017762.01.T01:three_prime_utr;Parent=MsG0380017762.01.T01
Gene Sequence

>MsG0380017762.01.T01

ATGGAGAGATTTTATAGTTATTCTGAACAACGAGATGGTATTCTGTTAGGATATGATGAGGATGAGAGTGGTAACAATCCGAGCACGTCACAGAGGAAATCAGACGTTGATTTTAACGACGTGTTTGGGGGACCACCGCGGAGGAGGTCATCGGTAAATTCATCGGTGAGTGGAGGAGAGGAAGGTGAAACGGGTTGGTGTAGTTGGCCTCCTCCACCGGAGAGCGAGAAACCGGTGTTTGGTGAGGATAGTGGAGTTAGGAGGAGAAGAAAAGGAAAAGATTTCTTTGATGATATATTTGGAGGAGAAGAGTCACAGTCTCAAACTCCAAGTGGGTGTTCAACACCAATGAGACGTGATGCTGCTGCTTTTAGTCCTGCTCTTCAACCACTTGCTTCTTCTCTCCCCCCATCCTTCAGCCTTCCTGCCATATTGGCAAATGGAGCGGACCTTCAGACATTTGGTTCCCCTCCCAGGAGTACGAATCCACTTAACAACGGCATTGCTGCTTCAAATGGATTAGACTTCTCAGACTCTCATCTATCTAGATTTTCAGCTCAACATAAAGACTTGCAAAATGATTTTAAGCCAACTTACAGGCAAAGTCTATTATCGAAGGAGTTTTCAAACTTGAGCCAGTCTGATGAAGTAGACAAAGGAAACAATTTGAAACAAGACAGATCTATTACTGAAGTTTCTCCTGATAATACCAGTAATGATAAATTCCATTTCTCAATATATAAATGGGCAAGTAAAGGTGTGGTGCCTTTGGCGATGCCTTTTAGGACAGAAAGAACCTCAAGGACAAAAGATAAGATTAAACTTGAGAAATGCTCGAGCGCCAAGGAATGGATTGTCACTGACATTACCACTCAAAATGATAGTCCTAAGGAATGGATCGTCAGTGAGATTACCACACAAAATGATAGTCCTATAACATACAATGGTTCTTCTTTAAAGAGTAATAAAAAACAAGAGGTGTCAAATACTTCCACAATCAGTAAAAACAAGGTAGATTCACACCAGAGTGTAGACCATATCATTTCCGCCAAAGCTCAACCAGATTCATCGAGCAGCCGTCAAACTCTTATTAAAGATGTTCTTGGTAGTCCTATTACATATGATGCTAAAGCAGAATCAAGTACTCATTCTACAGATGAGATAGTCTCTGATGGAAAAACTGAAGCAGCAAGTGAAACTCACAAACATGAGCCCAAATCATTACATCTCTATTATGATAAGATAACCAGAAAGTCGAGAGAAGCAAACATGGCGAAAAGCTCAAATAGTTTTGATATTCCTATGAATCCAAAGAAGGAAGATGAAAAGCAAAAGACAGATTCTAAGAGAGGTGTAGAATATAGCAAAGCTACTCCCCGAGGTTCATTAAGCCCAGGCAGAAGTATGGGAAAAGGCCGAGTTAAAGGGAAGGTCAAAGAATTTGCTCAAATATTCAATCAAGAAGCTGTAACAAAACCCAAACTCGACACAAAATCTCGACTTCAGGGTTATAAGTACAAGCAGAAAGGAGCTGTGGATGATGATCCTGAACAGTCCAAGAAGGAGATCTATACCGTAGAGACCATTGATATGGCTGCCAATAATTTGTCACAGCAGAATGATATCTCAGCATCAGCAATTCCTGACATTTCATTTGCTGATATTGAAGATAAAGACGAGTCCTTCCATGAGAATTTCACGGTACTTTGGCCAAATTGTGGCTGGAAGCCTGTGCCTCTTGTTGATATAATTGAAGGGAACGCGGTTAAAAGATCTTATCAAAGAGCTTTACTCAGTCTGCATCCAGATAAGTTGCAGCAAAAGGGTGCTACTTCAGACCAAAAGTACACTGCAGAAAAAGTTTTTGATATTTTACAGGAGGCATGGACTCAATTCAACATGGTTGGTGCACTCTAA

Protein sequence

>MsG0380017762.01.T01

MERFYSYSEQRDGILLGYDEDESGNNPSTSQRKSDVDFNDVFGGPPRRRSSVNSSVSGGEEGETGWCSWPPPPESEKPVFGEDSGVRRRRKGKDFFDDIFGGEESQSQTPSGCSTPMRRDAAAFSPALQPLASSLPPSFSLPAILANGADLQTFGSPPRSTNPLNNGIAASNGLDFSDSHLSRFSAQHKDLQNDFKPTYRQSLLSKEFSNLSQSDEVDKGNNLKQDRSITEVSPDNTSNDKFHFSIYKWASKGVVPLAMPFRTERTSRTKDKIKLEKCSSAKEWIVTDITTQNDSPKEWIVSEITTQNDSPITYNGSSLKSNKKQEVSNTSTISKNKVDSHQSVDHIISAKAQPDSSSSRQTLIKDVLGSPITYDAKAESSTHSTDEIVSDGKTEAASETHKHEPKSLHLYYDKITRKSREANMAKSSNSFDIPMNPKKEDEKQKTDSKRGVEYSKATPRGSLSPGRSMGKGRVKGKVKEFAQIFNQEAVTKPKLDTKSRLQGYKYKQKGAVDDDPEQSKKEIYTVETIDMAANNLSQQNDISASAIPDISFADIEDKDESFHENFTVLWPNCGWKPVPLVDIIEGNAVKRSYQRALLSLHPDKLQQKGATSDQKYTAEKVFDILQEAWTQFNMVGAL*