AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023319.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023319.01.T01 MTR_8g090220 99.064 641 6 0 1 641 1 641 0.0 1329
MsG0480023319.01.T01 MTR_8g090220 99.006 503 5 0 1 503 1 503 0.0 1047
MsG0480023319.01.T01 MTR_4g093850 41.679 691 290 13 26 641 17 669 9.75e-175 513
MsG0480023319.01.T01 MTR_2g009340 41.453 702 297 16 13 634 3 670 1.37e-172 508
MsG0480023319.01.T01 MTR_4g093850 42.915 494 205 8 26 461 17 491 1.29e-131 397
MsG0480023319.01.T01 MTR_5g016060 34.966 592 302 12 19 577 10 551 4.88e-114 355
MsG0480023319.01.T01 MTR_1g082690 34.392 567 312 11 24 581 29 544 2.18e-112 348
MsG0480023319.01.T01 MTR_5g032780 35.262 553 271 9 42 539 16 536 5.62e-107 337
MsG0480023319.01.T01 MTR_2g018750 32.855 627 321 16 52 633 26 597 3.03e-101 321
MsG0480023319.01.T01 MTR_1g064360 34.345 527 283 11 41 544 15 501 3.11e-101 320
MsG0480023319.01.T01 MTR_4g022330 33.582 536 287 8 20 527 2 496 3.33e-101 321
MsG0480023319.01.T01 MTR_1g088885 33.733 584 287 13 52 582 36 572 1.45e-100 320
MsG0480023319.01.T01 MTR_4g095430 35.252 556 274 12 52 570 13 519 2.25e-100 318
MsG0480023319.01.T01 MTR_2g084595 30.116 601 334 11 44 591 15 582 5.69e-100 318
MsG0480023319.01.T01 MTR_8g078900 34.735 547 253 11 47 529 15 521 7.58e-99 317
MsG0480023319.01.T01 MTR_5g015790 32.258 589 282 15 38 563 11 545 1.27e-98 315
MsG0480023319.01.T01 MTR_8g069330 36.810 489 255 8 55 522 29 484 3.52e-98 313
MsG0480023319.01.T01 MTR_1g014070 32.545 550 269 12 46 546 21 517 9.62e-98 312
MsG0480023319.01.T01 MTR_7g108290 34.237 590 279 15 52 582 36 575 5.17e-97 312
MsG0480023319.01.T01 MTR_1g106430 32.877 584 275 18 42 563 18 546 1.13e-95 307
MsG0480023319.01.T01 MTR_8g078900 35.094 530 240 11 64 529 2 491 4.02e-95 306
MsG0480023319.01.T01 MTR_1g094850 30.719 612 319 13 52 611 26 584 7.56e-95 305
MsG0480023319.01.T01 MTR_8g078900 36.765 476 216 9 99 529 46 481 3.94e-94 303
MsG0480023319.01.T01 MTR_7g073980 35.029 511 268 9 42 527 23 494 1.23e-93 302
MsG0480023319.01.T01 MTR_4g134210 33.147 537 300 11 45 551 19 526 1.10e-88 288
MsG0480023319.01.T01 MTR_3g062540 31.177 603 344 14 52 641 24 568 1.26e-88 287
MsG0480023319.01.T01 MTR_5g016060 34.937 478 240 9 129 577 2 437 6.32e-86 278
MsG0480023319.01.T01 MTR_5g075640 31.827 531 314 8 52 572 25 517 2.40e-84 276
MsG0480023319.01.T01 MTR_3g062540 31.046 583 331 14 72 641 2 526 2.09e-82 269
MsG0480023319.01.T01 MTR_2g048390 33.333 465 247 7 37 460 10 452 2.39e-82 267
MsG0480023319.01.T01 MTR_2g027410 31.197 593 328 14 35 598 8 549 6.77e-82 269
MsG0480023319.01.T01 MTR_5g075640 31.507 511 302 8 72 572 2 474 8.15e-77 255
MsG0480023319.01.T01 MTR_2g084595 30.617 454 257 7 44 461 15 446 9.83e-77 252
MsG0480023319.01.T01 MTR_8g078900 33.194 479 227 10 47 461 15 464 9.73e-76 250
MsG0480023319.01.T01 MTR_8g078900 35.294 408 190 8 99 461 46 424 2.90e-71 237
MsG0480023319.01.T01 MTR_2g027410 30.784 523 292 11 100 598 1 477 1.79e-70 237
MsG0480023319.01.T01 MTR_4g011530 35.897 312 154 6 215 523 46 314 1.70e-62 214
MsG0480023319.01.T01 MTR_2g102730 36.452 310 157 6 215 523 24 294 1.60e-59 205
MsG0480023319.01.T01 MTR_4g074190 25.940 532 275 13 95 570 3 471 4.67e-46 171
MsG0480023319.01.T01 MTR_4g074190 25.940 532 275 13 95 570 49 517 1.02e-45 171
MsG0480023319.01.T01 MTR_1g035720 24.505 555 294 17 55 541 6 503 1.14e-41 159
MsG0480023319.01.T01 MTR_4g045767 23.583 547 316 13 97 597 50 540 7.28e-38 148
MsG0480023319.01.T01 MTR_4g074190 25.537 419 211 10 95 462 49 417 6.82e-35 137
MsG0480023319.01.T01 MTR_1g105870 30.841 214 118 5 59 259 38 234 1.24e-27 112
MsG0480023319.01.T01 MTR_2g010890 23.210 461 268 14 119 553 1 401 1.36e-26 113
MsG0480023319.01.T01 MTR_2g048375 27.329 161 94 3 477 627 1 148 3.65e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023319.01.T01 AT5G10250 57.853 624 239 8 22 641 19 622 0.0 697
MsG0480023319.01.T01 AT5G10250 56.731 624 231 8 22 641 19 607 0.0 677
MsG0480023319.01.T01 AT5G64330 37.551 735 278 14 26 617 24 720 4.93e-157 470
MsG0480023319.01.T01 AT5G64330 40.630 603 203 9 44 527 44 610 2.21e-149 447
MsG0480023319.01.T01 AT5G64330 40.830 578 187 9 69 527 10 551 4.22e-142 427
MsG0480023319.01.T01 AT5G67385 36.640 494 252 8 52 525 25 477 4.85e-108 339
MsG0480023319.01.T01 AT5G48800 34.160 524 258 6 34 527 23 489 8.11e-101 320
MsG0480023319.01.T01 AT5G03250 33.388 605 307 15 54 610 28 584 1.83e-100 318
MsG0480023319.01.T01 AT1G03010 34.142 618 295 15 52 606 9 577 6.66e-100 318
MsG0480023319.01.T01 AT5G13600 32.492 634 317 18 44 626 18 591 7.32e-100 317
MsG0480023319.01.T01 AT5G67385 36.786 473 238 8 73 525 1 432 8.23e-100 316
MsG0480023319.01.T01 AT5G67385 36.786 473 238 8 73 525 1 432 8.23e-100 316
MsG0480023319.01.T01 AT5G67385 36.786 473 238 8 73 525 1 432 8.23e-100 316
MsG0480023319.01.T01 AT5G67385 36.786 473 238 8 73 525 1 432 8.23e-100 316
MsG0480023319.01.T01 AT1G03010 34.237 590 286 12 52 582 36 582 1.09e-99 318
MsG0480023319.01.T01 AT1G03010 33.713 614 303 13 52 606 35 603 1.16e-99 318
MsG0480023319.01.T01 AT1G30440 33.397 527 271 8 47 527 21 513 1.63e-99 318
MsG0480023319.01.T01 AT2G47860 32.823 588 286 11 52 582 37 572 3.65e-97 311
MsG0480023319.01.T01 AT5G67440 35.108 507 248 11 46 522 21 476 1.02e-96 308
MsG0480023319.01.T01 AT5G67440 35.108 507 248 11 46 522 21 476 1.02e-96 308
MsG0480023319.01.T01 AT3G44820 31.208 596 320 13 47 582 18 583 2.18e-94 305
MsG0480023319.01.T01 AT2G14820 33.087 541 263 12 38 532 11 498 1.18e-93 302
MsG0480023319.01.T01 AT2G14820 33.087 541 263 12 38 532 11 498 1.18e-93 302
MsG0480023319.01.T01 AT3G49970 36.219 439 232 9 60 496 2 394 1.62e-93 298
MsG0480023319.01.T01 AT3G49970 36.219 439 232 9 60 496 2 394 1.62e-93 298
MsG0480023319.01.T01 AT2G47860 32.455 607 286 13 52 582 37 595 1.67e-93 302
MsG0480023319.01.T01 AT1G67900 32.689 569 278 10 42 551 16 538 1.69e-93 301
MsG0480023319.01.T01 AT1G67900 32.689 569 278 10 42 551 16 538 1.69e-93 301
MsG0480023319.01.T01 AT1G67900 32.689 569 278 10 42 551 16 538 1.69e-93 301
MsG0480023319.01.T01 AT1G67900 32.689 569 278 10 42 551 16 538 1.69e-93 301
MsG0480023319.01.T01 AT1G67900 32.689 569 278 10 42 551 16 538 1.69e-93 301
MsG0480023319.01.T01 AT1G67900 32.689 569 278 10 42 551 16 538 1.69e-93 301
MsG0480023319.01.T01 AT3G08570 32.743 565 290 12 52 572 34 552 1.19e-92 299
MsG0480023319.01.T01 AT5G67440 34.908 487 236 11 66 522 4 439 2.57e-90 291
MsG0480023319.01.T01 AT3G50840 30.693 606 348 13 47 630 11 566 1.53e-89 289
MsG0480023319.01.T01 AT2G30520 33.673 490 274 9 52 531 30 478 5.99e-89 288
MsG0480023319.01.T01 AT3G08660 30.795 591 321 13 52 616 34 562 7.06e-89 288
MsG0480023319.01.T01 AT5G66560 32.212 565 256 12 47 527 14 535 2.70e-87 286
MsG0480023319.01.T01 AT4G37590 31.404 570 282 15 38 563 11 515 3.49e-87 283
MsG0480023319.01.T01 AT3G26490 32.486 551 249 11 43 526 17 511 6.99e-86 280
MsG0480023319.01.T01 AT3G26490 32.486 551 249 11 43 526 17 511 6.99e-86 280
MsG0480023319.01.T01 AT3G26490 32.486 551 249 11 43 526 17 511 6.99e-86 280
MsG0480023319.01.T01 AT4G31820 32.727 495 245 12 46 505 21 462 5.95e-85 277
MsG0480023319.01.T01 AT5G66560 34.810 474 225 10 95 527 66 496 1.61e-84 278
MsG0480023319.01.T01 AT3G08660 30.991 555 297 11 88 616 8 502 1.82e-84 275
MsG0480023319.01.T01 AT5G66560 34.810 474 225 10 95 527 76 506 2.28e-84 278
MsG0480023319.01.T01 AT5G47800 32.305 486 274 10 43 505 17 470 4.88e-83 272
MsG0480023319.01.T01 AT5G47800 32.305 486 274 10 43 505 17 470 4.88e-83 272
MsG0480023319.01.T01 AT5G47800 32.305 486 274 10 43 505 17 470 4.88e-83 272
MsG0480023319.01.T01 AT3G50840 31.004 558 313 13 95 630 23 530 1.06e-81 268
MsG0480023319.01.T01 AT3G50840 31.004 558 313 13 95 630 23 530 1.06e-81 268
MsG0480023319.01.T01 AT5G47800 32.305 486 274 10 43 505 130 583 1.13e-81 271
MsG0480023319.01.T01 AT2G30520 33.404 470 262 9 72 531 2 430 1.74e-81 268
MsG0480023319.01.T01 AT2G30520 33.404 470 262 9 72 531 2 430 1.74e-81 268
MsG0480023319.01.T01 AT4G31820 33.710 442 206 11 99 505 20 409 7.21e-78 257
MsG0480023319.01.T01 AT2G23050 30.769 507 262 10 41 526 16 454 1.50e-77 255
MsG0480023319.01.T01 AT2G47860 33.705 448 219 8 52 461 37 444 7.72e-75 247
MsG0480023319.01.T01 AT5G03250 31.731 520 260 14 138 610 1 472 4.24e-72 241
MsG0480023319.01.T01 AT2G47860 33.191 467 219 10 52 461 37 467 9.89e-72 239
MsG0480023319.01.T01 AT2G47860 31.474 502 239 10 138 582 1 454 1.31e-68 233
MsG0480023319.01.T01 AT2G47860 31.474 502 239 10 138 582 1 454 1.31e-68 233
MsG0480023319.01.T01 AT3G26490 31.481 486 221 10 43 461 17 457 2.62e-68 231
MsG0480023319.01.T01 AT3G08660 31.494 435 235 8 52 468 34 423 2.12e-67 227
MsG0480023319.01.T01 AT1G52770 32.518 409 214 9 197 583 10 378 6.91e-67 226
MsG0480023319.01.T01 AT5G66560 30.261 499 232 11 47 461 14 480 3.19e-64 220
MsG0480023319.01.T01 AT3G15570 34.375 320 160 6 215 523 29 309 1.01e-57 201
MsG0480023319.01.T01 AT3G19850 29.103 457 237 9 94 508 51 462 9.16e-56 199
MsG0480023319.01.T01 AT2G23050 29.557 406 201 9 138 526 1 338 7.50e-53 186
MsG0480023319.01.T01 AT5G48130 27.083 480 269 10 52 505 39 463 2.06e-52 191
MsG0480023319.01.T01 AT1G50280 26.966 445 256 8 95 505 18 427 7.19e-44 164
MsG0480023319.01.T01 AT1G50280 26.966 445 256 8 95 505 51 460 7.74e-44 165
MsG0480023319.01.T01 AT3G03510 26.840 462 258 14 107 560 8 397 5.08e-37 144
MsG0480023319.01.T01 AT5G17580 25.714 490 290 12 42 505 10 451 1.71e-36 144
MsG0480023319.01.T01 AT5G17580 26.950 423 245 10 105 505 56 436 8.81e-36 142
MsG0480023319.01.T01 AT3G22104 25.664 452 248 12 76 496 26 420 7.88e-35 139
MsG0480023319.01.T01 AT3G22104 24.561 399 217 9 125 496 4 345 4.35e-27 115
MsG0480023319.01.T01 AT3G22104 24.561 399 217 9 125 496 4 345 4.35e-27 115
MsG0480023319.01.T01 AT3G22104 24.561 399 217 9 125 496 4 345 4.35e-27 115

Find 134 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTGTCAGACTGACTTTC+AGG 0.132980 4:-83696765 None:intergenic
CACAGCATCTTCTAACAATT+TGG 0.179939 4:-83698046 None:intergenic
CTCCAGCCTGATAGATTCTT+TGG 0.216318 4:-83700366 None:intergenic
GAGGAGGAATTATGCTTATT+AGG 0.225056 4:-83698400 None:intergenic
ATTCAATATTAGTAGGCTTT+TGG 0.241298 4:+83698891 MsG0480023319.01.T01:CDS
CATTTGTCGTGCTTTCTTCA+TGG 0.250887 4:+83697964 MsG0480023319.01.T01:CDS
CAGCCTCTAATCTCAAATTC+TGG 0.250919 4:+83697750 MsG0480023319.01.T01:CDS
TGCGGATAATTTCAGCAATT+AGG 0.253941 4:+83698180 MsG0480023319.01.T01:CDS
AACATTGTAATTGAAAGATT+TGG 0.268935 4:-83698943 None:intergenic
TTCCCAGAATTTGAGATTAG+AGG 0.277466 4:-83697753 None:intergenic
AAGCTGGTGGTTCGATGATT+TGG 0.289085 4:+83698133 MsG0480023319.01.T01:CDS
GACTTTCAGGGTCTTGTGCT+TGG 0.289224 4:-83696752 None:intergenic
GCGGATAATTTCAGCAATTA+GGG 0.291903 4:+83698181 MsG0480023319.01.T01:CDS
TTAGAAGGGCTTAGAGGATA+TGG 0.292438 4:+83698284 MsG0480023319.01.T01:CDS
CTCAAGCTTGAAAACTTTCC+AGG 0.304064 4:+83697780 MsG0480023319.01.T01:CDS
TATCAGGCTGGAGTTTAAAT+TGG 0.321879 4:+83700376 MsG0480023319.01.T01:CDS
GCACATTATAAGTGGTTTCC+TGG 0.326824 4:-83697068 None:intergenic
TGTCTATAGTTTCAGATGTC+TGG 0.334509 4:-83700233 None:intergenic
ACCTGGACAACTGTTCTTAG+AGG 0.338185 4:-83699260 None:intergenic
TGCGTTGTATACTTTGGTTC+AGG 0.340379 4:-83700120 None:intergenic
ACTTTCAGGGTCTTGTGCTT+GGG 0.351122 4:-83696751 None:intergenic
CCTACTAATATTGAATTTCC+CGG 0.364748 4:-83698884 None:intergenic
GAGGAGTTAGAAGGGCTTAG+AGG 0.370662 4:+83698278 MsG0480023319.01.T01:CDS
ACAATTCTAAAATTCTGTTA+TGG 0.376842 4:+83697822 MsG0480023319.01.T01:CDS
TGCAGAGTCTTCTACGGTCT+TGG 0.377991 4:-83699172 None:intergenic
TTCTACGGTCTTGGTCAGTT+AGG 0.381517 4:-83699163 None:intergenic
CCGGGAAATTCAATATTAGT+AGG 0.395757 4:+83698884 MsG0480023319.01.T01:CDS
TTTACCAATGATCTCTGGTT+TGG 0.398294 4:-83698213 None:intergenic
GATGCTGCATCCTCACTTGC+GGG 0.402710 4:-83698101 None:intergenic
GACAAACCAAAGAATCTATC+AGG 0.413587 4:+83700360 MsG0480023319.01.T01:CDS
ACACGGAGAGCCTTCTTCTC+GGG 0.418325 4:-83700500 None:intergenic
GAGCTAATTGCTGCAAGCTT+GGG 0.418641 4:-83696699 None:intergenic
TCTAACTCCTCATACATTCC+TGG 0.422868 4:-83698266 None:intergenic
GACCTTTAGGTAGGTGTCAA+TGG 0.427446 4:-83699028 None:intergenic
TTAATTCCTAGATATCAAAA+TGG 0.429080 4:+83698560 MsG0480023319.01.T01:CDS
AGCCTCTAATCTCAAATTCT+GGG 0.431924 4:+83697751 MsG0480023319.01.T01:CDS
ATGCAACTGCAACAAAAGTC+CGG 0.435207 4:+83698865 MsG0480023319.01.T01:CDS
TCTGGTTTCATATATCAGTT+AGG 0.435439 4:+83696650 MsG0480023319.01.T01:five_prime_UTR
GACACGGAGAGCCTTCTTCT+CGG 0.443418 4:-83700501 None:intergenic
TTATCCGAGTTGAAGTCTAT+AGG 0.445995 4:-83697849 None:intergenic
TATCCGAGTTGAAGTCTATA+GGG 0.446756 4:-83697848 None:intergenic
AGAACCTGCGTTGTATACTT+TGG 0.448430 4:-83700126 None:intergenic
CTTGAATTGAAAAGTCTGTT+GGG 0.449484 4:-83697044 None:intergenic
TTCTGTCAGACTGACTTTCA+GGG 0.449988 4:-83696764 None:intergenic
TCTACGGTCTTGGTCAGTTA+GGG 0.449995 4:-83699162 None:intergenic
ATTAATTTAGACAGCGTGTC+TGG 0.450562 4:+83696632 MsG0480023319.01.T01:five_prime_UTR
TCCTTCCATGTAAAACCAAC+AGG 0.451380 4:+83700414 MsG0480023319.01.T01:CDS
ATACATTTACCAATGATCTC+TGG 0.452219 4:-83698218 None:intergenic
AAGTGGAATCAACTCTCAAC+AGG 0.453660 4:+83700203 MsG0480023319.01.T01:CDS
TGAGCTAATTGCTGCAAGCT+TGG 0.454672 4:-83696700 None:intergenic
TCTCTAGTTTCACCTCCTGT+TGG 0.456759 4:-83700429 None:intergenic
TACCTTGTGCACATTATAAG+TGG 0.465167 4:-83697076 None:intergenic
GGAATGTATGAGGAGTTAGA+AGG 0.465676 4:+83698269 MsG0480023319.01.T01:CDS
CTTGGTCAGTTAGGGAAGGA+TGG 0.466551 4:-83699154 None:intergenic
AGCTATTGTGACATGTTTGT+TGG 0.475232 4:-83696820 None:intergenic
TGAAATGATCGAGTATGTTC+TGG 0.476508 4:-83698988 None:intergenic
ACTTGAATTGAAAAGTCTGT+TGG 0.476835 4:-83697045 None:intergenic
ATTTCAGCAATTAGGGCAAA+GGG 0.478066 4:+83698188 MsG0480023319.01.T01:CDS
ATATCAAAATGCGGCTACAT+AGG 0.478687 4:+83697714 MsG0480023319.01.T01:CDS
ATCTGCAACAAGAACTTACA+TGG 0.493501 4:-83698437 None:intergenic
GCCTCTAAGAACAGTTGTCC+AGG 0.494899 4:+83699259 MsG0480023319.01.T01:CDS
GCTATTGTGACATGTTTGTT+GGG 0.495372 4:-83696819 None:intergenic
ACGAGTGTGGTTTGGTGATG+TGG 0.497567 4:-83700466 None:intergenic
GATGCTGTGATTCTATAGCT+TGG 0.503818 4:+83698060 MsG0480023319.01.T01:CDS
TGTGAGGAAAGCTTCAGTCT+TGG 0.507277 4:-83697943 None:intergenic
GGAACCAAACCAGAGATCAT+TGG 0.508422 4:+83698209 MsG0480023319.01.T01:CDS
GATCTACGACGAGTGTGGTT+TGG 0.513023 4:-83700474 None:intergenic
CTTGTTGCAGATGCTAAAGA+TGG 0.513993 4:+83698448 MsG0480023319.01.T01:CDS
GAAAAGTCTGTTGGGATTCG+AGG 0.514401 4:-83697036 None:intergenic
AGCAATGCAAGAGAAGGAAC+CGG 0.515645 4:+83700176 MsG0480023319.01.T01:CDS
CATTCCTGGTAGCCATCTCT+TGG 0.516344 4:-83698252 None:intergenic
CTGTGATTCTATAGCTTGGA+AGG 0.517789 4:+83698064 MsG0480023319.01.T01:CDS
TCAGACCTTGAAAAGAGAGT+TGG 0.522254 4:+83698503 MsG0480023319.01.T01:CDS
CAGGCTGGAGTTTAAATTGG+CGG 0.523456 4:+83700379 MsG0480023319.01.T01:CDS
TAGAAGGGCTTAGAGGATAT+GGG 0.526409 4:+83698285 MsG0480023319.01.T01:CDS
GTAGATCAGCCCCGAGAAGA+AGG 0.527618 4:+83700490 MsG0480023319.01.T01:CDS
CTTGTGAAAATCTATCTCCA+TGG 0.528028 4:+83698012 MsG0480023319.01.T01:CDS
CCTTGAAAAGAGAGTTGGTA+TGG 0.528846 4:+83698508 MsG0480023319.01.T01:CDS
AACCAAAGAATCTATCAGGC+TGG 0.531250 4:+83700364 MsG0480023319.01.T01:CDS
AGATATCAAAATGGAGGTCA+AGG 0.533332 4:+83698569 MsG0480023319.01.T01:CDS
TGCAACTGCAACAAAAGTCC+GGG 0.536493 4:+83698866 MsG0480023319.01.T01:CDS
TTGGTCAGTTAGGGAAGGAT+GGG 0.536654 4:-83699153 None:intergenic
AATTTCAGCAATTAGGGCAA+AGG 0.537477 4:+83698187 MsG0480023319.01.T01:CDS
AAAAGTCTGTTGGGATTCGA+GGG 0.537749 4:-83697035 None:intergenic
AAACATGAAATCACTTCAAG+TGG 0.548709 4:+83696728 MsG0480023319.01.T01:exon
AGATGCTGCATCCTCACTTG+CGG 0.555801 4:-83698102 None:intergenic
TTGTGAAAATCTATCTCCAT+GGG 0.559597 4:+83698013 MsG0480023319.01.T01:CDS
TAAAAGGCTGACCTTTAGGT+AGG 0.562453 4:-83699037 None:intergenic
GAGAGCAGCAATGCAAGAGA+AGG 0.563979 4:+83700170 MsG0480023319.01.T01:CDS
TATGCCAAGAGATGGCTACC+AGG 0.565928 4:+83698248 MsG0480023319.01.T01:CDS
GCAGTAATTCAGCTAAGACT+TGG 0.571771 4:-83698966 None:intergenic
ATGACTGAAGAACTAGAAGA+TGG 0.572238 4:+83697909 MsG0480023319.01.T01:CDS
GATCTGTTGCAACTTCAGCT+AGG 0.573474 4:-83698921 None:intergenic
CAGCATCTAATCAAGAAAGC+TGG 0.575400 4:+83698117 MsG0480023319.01.T01:CDS
GTTCTGCAGTTCTACCATGT+TGG 0.579053 4:-83700292 None:intergenic
GAGTTGATTCCACTTTGTGC+CGG 0.581941 4:-83700195 None:intergenic
CACGGAGAGCCTTCTTCTCG+GGG 0.584375 4:-83700499 None:intergenic
ATGGCTACCAGGAATGTATG+AGG 0.585069 4:+83698259 MsG0480023319.01.T01:CDS
TCAAATGTTTCACATCCACC+TGG 0.585855 4:-83697798 None:intergenic
AGCCATTGACACCTACCTAA+AGG 0.587167 4:+83699026 MsG0480023319.01.T01:CDS
TCATGCAATATGCCAAGAGA+TGG 0.594644 4:+83698240 MsG0480023319.01.T01:CDS
CATGGGACAGCATCTTGTTG+AGG 0.601532 4:-83698419 None:intergenic
AGAGAGCACTAGACATAGCA+AGG 0.603854 4:+83698355 MsG0480023319.01.T01:CDS
CGAGTGTGGTTTGGTGATGT+GGG 0.605082 4:-83700465 None:intergenic
GGGCTTAGAGGATATGGGCA+TGG 0.605115 4:+83698290 MsG0480023319.01.T01:CDS
GAATGTATGAGGAGTTAGAA+GGG 0.605950 4:+83698270 MsG0480023319.01.T01:CDS
CGGTCTTGGTCAGTTAGGGA+AGG 0.612259 4:-83699158 None:intergenic
CGAGAATGTAAAGTCCAACA+TGG 0.615865 4:+83700278 MsG0480023319.01.T01:CDS
CATAAAATGATCAATGCGGA+GGG 0.617020 4:-83698159 None:intergenic
GGGACAGCATCTTGTTGAGG+AGG 0.618679 4:-83698416 None:intergenic
GAGAAGGAACCGGCACAAAG+TGG 0.620698 4:+83700186 MsG0480023319.01.T01:CDS
ATTCCTAGATATCAAAATGG+AGG 0.624406 4:+83698563 MsG0480023319.01.T01:CDS
AAAATGATCAATGCGGAGGG+TGG 0.627548 4:-83698156 None:intergenic
CAAAATGCGGCTACATAGGA+CGG 0.632260 4:+83697718 MsG0480023319.01.T01:CDS
ATGCGGCTACATAGGACGGT+CGG 0.639956 4:+83697722 MsG0480023319.01.T01:CDS
GCATAAAATGATCAATGCGG+AGG 0.642568 4:-83698160 None:intergenic
ACAGGAGGTGAAACTAGAGA+TGG 0.647018 4:+83700432 MsG0480023319.01.T01:CDS
AAGAAAGCACGACAAATGTG+AGG 0.659530 4:-83697959 None:intergenic
AAGCTTGAAAACTTTCCAGG+TGG 0.660259 4:+83697783 MsG0480023319.01.T01:CDS
CATCTAATCAAGAAAGCTGG+TGG 0.660897 4:+83698120 MsG0480023319.01.T01:CDS
AACCACTTATAATGTGCACA+AGG 0.667560 4:+83697074 MsG0480023319.01.T01:CDS
CCTCCCTATAGACTTCAACT+CGG 0.675286 4:+83697845 MsG0480023319.01.T01:CDS
GGGCTGATCTACGACGAGTG+TGG 0.675575 4:-83700479 None:intergenic
CCGAGTTGAAGTCTATAGGG+AGG 0.687521 4:-83697845 None:intergenic
CACTATGCAAGACATAGATG+TGG 0.688304 4:+83698798 MsG0480023319.01.T01:CDS
TCTGCAACAAGAACTTACAT+GGG 0.692050 4:-83698436 None:intergenic
AAAGTCTGTTGGGATTCGAG+GGG 0.692715 4:-83697034 None:intergenic
AAGACATAGATGTGGTACAA+CGG 0.695512 4:+83698806 MsG0480023319.01.T01:CDS
TTCCATGTAAAACCAACAGG+AGG 0.698959 4:+83700417 MsG0480023319.01.T01:CDS
TACCCCTTGATATCAAAATG+CGG 0.703247 4:+83697705 MsG0480023319.01.T01:CDS
TGAACCAAAGTATACAACGC+AGG 0.706992 4:+83700122 MsG0480023319.01.T01:CDS
TCCGCATAAAATGATCAATG+CGG 0.719094 4:-83698163 None:intergenic
TATGGTGTTAGAAGATGCTG+AGG 0.726855 4:+83698526 MsG0480023319.01.T01:CDS
CATACTCGATCATTTCACGA+TGG 0.744904 4:+83698994 MsG0480023319.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATTATCTTATTAAAAA+TGG - Chr4:83699947-83699966 None:intergenic 10.0%
!! TTTAACTGCATAAAATATAA+AGG - Chr4:83696891-83696910 None:intergenic 15.0%
!!! TATTTTCTCTGTTTATTTTT+TGG + Chr4:83696988-83697007 MsG0480023319.01.T01:intron 15.0%
!!! TTTATATTTTTCCATTTGTA+AGG - Chr4:83699648-83699667 None:intergenic 15.0%
!! AACATTGTAATTGAAAGATT+TGG - Chr4:83698946-83698965 None:intergenic 20.0%
!! AATATAAAGGATTCTATTTC+TGG - Chr4:83696878-83696897 None:intergenic 20.0%
!! ACAAGAAAATAGGAATTAAA+AGG - Chr4:83699056-83699075 None:intergenic 20.0%
!! ACTCATACAAAAATAACTAT+TGG - Chr4:83696964-83696983 None:intergenic 20.0%
!! CAACATATAAAAGATTAAGT+TGG - Chr4:83697666-83697685 None:intergenic 20.0%
!! TATCTTATTAAAAATGGAGT+TGG - Chr4:83699941-83699960 None:intergenic 20.0%
!! TGCGAAAAATAAAAAATAAC+CGG + Chr4:83698677-83698696 MsG0480023319.01.T01:intron 20.0%
!! TTAATTCCTAGATATCAAAA+TGG + Chr4:83698560-83698579 MsG0480023319.01.T01:CDS 20.0%
!!! AATGATTTTCTGCATTTATA+AGG - Chr4:83697120-83697139 None:intergenic 20.0%
!!! ACAATTCTAAAATTCTGTTA+TGG + Chr4:83697822-83697841 MsG0480023319.01.T01:CDS 20.0%
!!! ATATAAAGGATTCTATTTCT+GGG - Chr4:83696877-83696896 None:intergenic 20.0%
!!! CAACTTAATCTTTTATATGT+TGG + Chr4:83697664-83697683 MsG0480023319.01.T01:intron 20.0%
!!! GATTTCTTTTTCAAAGTTAA+AGG - Chr4:83699521-83699540 None:intergenic 20.0%
!!! TGGTTTTCAAAAAAATTCTA+AGG - Chr4:83697569-83697588 None:intergenic 20.0%
!!! TTTTATTTCTAAATCACAGT+AGG - Chr4:83699806-83699825 None:intergenic 20.0%
! AAAGAAGAAACTTCTTTAGA+AGG + Chr4:83699584-83699603 MsG0480023319.01.T01:intron 25.0%
! AAGATAGAAATTAGTGTCTT+TGG - Chr4:83698719-83698738 None:intergenic 25.0%
! CCAGAATTAGAATAAAAACA+TGG + Chr4:83697586-83697605 MsG0480023319.01.T01:intron 25.0%
! GAAAAATAAAAAATAACCGG+AGG + Chr4:83698680-83698699 MsG0480023319.01.T01:intron 25.0%
! GCATAAAAAATGAACATTCA+AGG + Chr4:83696847-83696866 MsG0480023319.01.T01:CDS 25.0%
! GGAATTCTTAAAACTCTATT+TGG - Chr4:83699342-83699361 None:intergenic 25.0%
! TGAATTGAACACAAGAAAAT+AGG - Chr4:83699066-83699085 None:intergenic 25.0%
!! ATTCAATATTAGTAGGCTTT+TGG + Chr4:83698891-83698910 MsG0480023319.01.T01:CDS 25.0%
!! TATTTTCTTGTGTTCAATTC+AGG + Chr4:83699065-83699084 MsG0480023319.01.T01:intron 25.0%
!!! CCATGTTTTTATTCTAATTC+TGG - Chr4:83697589-83697608 None:intergenic 25.0%
!!! CTCTGTTTATTTTTTGGTTT+GGG + Chr4:83696994-83697013 MsG0480023319.01.T01:intron 25.0%
!!! TCTCTGTTTATTTTTTGGTT+TGG + Chr4:83696993-83697012 MsG0480023319.01.T01:intron 25.0%
!!! TGTCATCATTTTTTTCTTCA+TGG - Chr4:83699363-83699382 None:intergenic 25.0%
!!! TTTTTTATTTTTCGCAGAGT+TGG - Chr4:83698673-83698692 None:intergenic 25.0%
AAACATGAAATCACTTCAAG+TGG + Chr4:83696728-83696747 MsG0480023319.01.T01:exon 30.0%
AATTCCACAAAACAACATTG+TGG + Chr4:83699965-83699984 MsG0480023319.01.T01:intron 30.0%
ACTTGAATTGAAAAGTCTGT+TGG - Chr4:83697048-83697067 None:intergenic 30.0%
ATACATTTACCAATGATCTC+TGG - Chr4:83698221-83698240 None:intergenic 30.0%
ATTCCTAGATATCAAAATGG+AGG + Chr4:83698563-83698582 MsG0480023319.01.T01:CDS 30.0%
ATTGAAGATCTGAACCAATT+TGG + Chr4:83699450-83699469 MsG0480023319.01.T01:intron 30.0%
CCTACTAATATTGAATTTCC+CGG - Chr4:83698887-83698906 None:intergenic 30.0%
CTTGAATTGAAAAGTCTGTT+GGG - Chr4:83697047-83697066 None:intergenic 30.0%
GTACAAATGATCCTTACAAA+TGG + Chr4:83699634-83699653 MsG0480023319.01.T01:intron 30.0%
TGTATAGAGGAAATACTTTG+CGG - Chr4:83699761-83699780 None:intergenic 30.0%
TTGAAGATCTGAACCAATTT+GGG + Chr4:83699451-83699470 MsG0480023319.01.T01:intron 30.0%
TTGTGAAAATCTATCTCCAT+GGG + Chr4:83698013-83698032 MsG0480023319.01.T01:CDS 30.0%
! AAACTTCTTTAGAAGGAAAG+AGG + Chr4:83699591-83699610 MsG0480023319.01.T01:intron 30.0%
! AACTTCTTTAGAAGGAAAGA+GGG + Chr4:83699592-83699611 MsG0480023319.01.T01:intron 30.0%
! ACACAAACTTTTGTGTATAG+AGG - Chr4:83699774-83699793 None:intergenic 30.0%
! ACTCTATGACACATGATTTT+GGG - Chr4:83699712-83699731 None:intergenic 30.0%
! TCTGGTTTCATATATCAGTT+AGG + Chr4:83696650-83696669 MsG0480023319.01.T01:five_prime_UTR 30.0%
! TTTTACTGAGCTAAACAAGA+AGG - Chr4:83697145-83697164 None:intergenic 30.0%
!! TATTTTGCATGCTTTTAAGG+AGG - Chr4:83697459-83697478 None:intergenic 30.0%
!! TCATTTTTCTCCTGTCATAT+TGG + Chr4:83698620-83698639 MsG0480023319.01.T01:intron 30.0%
!! TGTGTTGTTGTGTTTTTCAA+AGG - Chr4:83699430-83699449 None:intergenic 30.0%
!! TTATTTTGCAGAGTCTTCTA+CGG - Chr4:83699181-83699200 None:intergenic 30.0%
!!! TGCTATTTTGCATGCTTTTA+AGG - Chr4:83697462-83697481 None:intergenic 30.0%
AAATGGAGGTCAAGGAAAAA+TGG + Chr4:83698577-83698596 MsG0480023319.01.T01:CDS 35.0%
AACCAAACAGCAAGACTAAT+TGG + Chr4:83699666-83699685 MsG0480023319.01.T01:intron 35.0%
AACCACTTATAATGTGCACA+AGG + Chr4:83697074-83697093 MsG0480023319.01.T01:CDS 35.0%
AAGACATAGATGTGGTACAA+CGG + Chr4:83698806-83698825 MsG0480023319.01.T01:CDS 35.0%
AATGCCAATTCCAATATGAC+AGG - Chr4:83698633-83698652 None:intergenic 35.0%
AATTTCAGCAATTAGGGCAA+AGG + Chr4:83698187-83698206 MsG0480023319.01.T01:CDS 35.0%
ACAAAACAACATTGTGGATC+TGG + Chr4:83699971-83699990 MsG0480023319.01.T01:intron 35.0%
AGAGCACAATCCTGTTAATA+GGG + Chr4:83697273-83697292 MsG0480023319.01.T01:intron 35.0%
AGATATCAAAATGGAGGTCA+AGG + Chr4:83698569-83698588 MsG0480023319.01.T01:CDS 35.0%
AGCCTCTAATCTCAAATTCT+GGG + Chr4:83697751-83697770 MsG0480023319.01.T01:CDS 35.0%
AGCTATTGTGACATGTTTGT+TGG - Chr4:83696823-83696842 None:intergenic 35.0%
ATATCAAAATGCGGCTACAT+AGG + Chr4:83697714-83697733 MsG0480023319.01.T01:CDS 35.0%
ATCATGTGTCATAGAGTGAA+AGG + Chr4:83699715-83699734 MsG0480023319.01.T01:intron 35.0%
ATCTGCAACAAGAACTTACA+TGG - Chr4:83698440-83698459 None:intergenic 35.0%
ATGACTGAAGAACTAGAAGA+TGG + Chr4:83697909-83697928 MsG0480023319.01.T01:CDS 35.0%
ATTAATTTAGACAGCGTGTC+TGG + Chr4:83696632-83696651 MsG0480023319.01.T01:five_prime_UTR 35.0%
ATTTCAGCAATTAGGGCAAA+GGG + Chr4:83698188-83698207 MsG0480023319.01.T01:CDS 35.0%
CACAGCATCTTCTAACAATT+TGG - Chr4:83698049-83698068 None:intergenic 35.0%
CAGAGCTAATATGTCCATAA+TGG + Chr4:83700075-83700094 MsG0480023319.01.T01:intron 35.0%
CATAAAATGATCAATGCGGA+GGG - Chr4:83698162-83698181 None:intergenic 35.0%
CCGGGAAATTCAATATTAGT+AGG + Chr4:83698884-83698903 MsG0480023319.01.T01:CDS 35.0%
CTTGTGAAAATCTATCTCCA+TGG + Chr4:83698012-83698031 MsG0480023319.01.T01:CDS 35.0%
GAATGTATGAGGAGTTAGAA+GGG + Chr4:83698270-83698289 MsG0480023319.01.T01:CDS 35.0%
GAATTAAAAGGCTGACCTTT+AGG - Chr4:83699044-83699063 None:intergenic 35.0%
GACAAACCAAAGAATCTATC+AGG + Chr4:83700360-83700379 MsG0480023319.01.T01:CDS 35.0%
GAGGAGGAATTATGCTTATT+AGG - Chr4:83698403-83698422 None:intergenic 35.0%
GATTTATGCTCCCTATTAAC+AGG - Chr4:83697286-83697305 None:intergenic 35.0%
GCGGATAATTTCAGCAATTA+GGG + Chr4:83698181-83698200 MsG0480023319.01.T01:CDS 35.0%
GCTATTGTGACATGTTTGTT+GGG - Chr4:83696822-83696841 None:intergenic 35.0%
TACCCCTTGATATCAAAATG+CGG + Chr4:83697705-83697724 MsG0480023319.01.T01:CDS 35.0%
TACCTTGTGCACATTATAAG+TGG - Chr4:83697079-83697098 None:intergenic 35.0%
TATCAGGCTGGAGTTTAAAT+TGG + Chr4:83700376-83700395 MsG0480023319.01.T01:CDS 35.0%
TCATGTGTCATAGAGTGAAA+GGG + Chr4:83699716-83699735 MsG0480023319.01.T01:intron 35.0%
TCCGCATAAAATGATCAATG+CGG - Chr4:83698166-83698185 None:intergenic 35.0%
TCTAAGCTGAATCACCATTA+TGG - Chr4:83700092-83700111 None:intergenic 35.0%
TCTGCAACAAGAACTTACAT+GGG - Chr4:83698439-83698458 None:intergenic 35.0%
TGAAATGATCGAGTATGTTC+TGG - Chr4:83698991-83699010 None:intergenic 35.0%
TGAAGATCTGAACCAATTTG+GGG + Chr4:83699452-83699471 MsG0480023319.01.T01:intron 35.0%
TGCGGATAATTTCAGCAATT+AGG + Chr4:83698180-83698199 MsG0480023319.01.T01:CDS 35.0%
TGTCTATAGTTTCAGATGTC+TGG - Chr4:83700236-83700255 None:intergenic 35.0%
TTCTCCTGTCATATTGGAAT+TGG + Chr4:83698626-83698645 MsG0480023319.01.T01:intron 35.0%
TTTACCAATGATCTCTGGTT+TGG - Chr4:83698216-83698235 None:intergenic 35.0%
! AAGAGCACAATCCTGTTAAT+AGG + Chr4:83697272-83697291 MsG0480023319.01.T01:intron 35.0%
! AGACTTTTCAATTCAAGTCC+AGG + Chr4:83697050-83697069 MsG0480023319.01.T01:CDS 35.0%
! ATTTGGATATTTTCAGCCCA+TGG - Chr4:83698032-83698051 None:intergenic 35.0%
! CACTCTATGACACATGATTT+TGG - Chr4:83699713-83699732 None:intergenic 35.0%
! CTCTATGACACATGATTTTG+GGG - Chr4:83699711-83699730 None:intergenic 35.0%
! CTCTTTTGGATAGAGAAAGA+GGG + Chr4:83697379-83697398 MsG0480023319.01.T01:intron 35.0%
! TATCCGAGTTGAAGTCTATA+GGG - Chr4:83697851-83697870 None:intergenic 35.0%
! TCTTTTGGATAGAGAAAGAG+GGG + Chr4:83697380-83697399 MsG0480023319.01.T01:intron 35.0%
! TTATCCGAGTTGAAGTCTAT+AGG - Chr4:83697852-83697871 None:intergenic 35.0%
! TTCCCAGAATTTGAGATTAG+AGG - Chr4:83697756-83697775 None:intergenic 35.0%
!! GATCTTTGGAACTTAGTCTT+CGG + Chr4:83699294-83699313 MsG0480023319.01.T01:intron 35.0%
!! TAGCCGCATTTTGATATCAA+GGG - Chr4:83697711-83697730 None:intergenic 35.0%
!! TCCGCATTGATCATTTTATG+CGG + Chr4:83698162-83698181 MsG0480023319.01.T01:CDS 35.0%
!! TGACCTCCATTTTGATATCT+AGG - Chr4:83698569-83698588 None:intergenic 35.0%
!! TGGACATATTAGCTCTGAAA+AGG - Chr4:83700072-83700091 None:intergenic 35.0%
!! TTCCAATTAGTCTTGCTGTT+TGG - Chr4:83699671-83699690 None:intergenic 35.0%
!!! AGATCCACAATGTTGTTTTG+TGG - Chr4:83699972-83699991 None:intergenic 35.0%
AAAAGTCTGTTGGGATTCGA+GGG - Chr4:83697038-83697057 None:intergenic 40.0%
AACCAAAGAATCTATCAGGC+TGG + Chr4:83700364-83700383 MsG0480023319.01.T01:CDS 40.0%
AAGCTTGAAAACTTTCCAGG+TGG + Chr4:83697783-83697802 MsG0480023319.01.T01:CDS 40.0%
AAGTGGAATCAACTCTCAAC+AGG + Chr4:83700203-83700222 MsG0480023319.01.T01:CDS 40.0%
AGAACCTGCGTTGTATACTT+TGG - Chr4:83700129-83700148 None:intergenic 40.0%
AGACTAAGTTCCAAAGATCC+AGG - Chr4:83699293-83699312 None:intergenic 40.0%
AGAGAACATCAGACATGGAT+AGG + Chr4:83697429-83697448 MsG0480023319.01.T01:intron 40.0%
ATCATCAGCAGGGTATATGA+GGG + Chr4:83697179-83697198 MsG0480023319.01.T01:intron 40.0%
ATGCAACTGCAACAAAAGTC+CGG + Chr4:83698865-83698884 MsG0480023319.01.T01:CDS 40.0%
CACAAACACACTAGGAAGAA+AGG - Chr4:83697316-83697335 None:intergenic 40.0%
CACTATGCAAGACATAGATG+TGG + Chr4:83698798-83698817 MsG0480023319.01.T01:CDS 40.0%
CAGCATCTAATCAAGAAAGC+TGG + Chr4:83698117-83698136 MsG0480023319.01.T01:CDS 40.0%
CAGCCTCTAATCTCAAATTC+TGG + Chr4:83697750-83697769 MsG0480023319.01.T01:CDS 40.0%
CATACTCGATCATTTCACGA+TGG + Chr4:83698994-83699013 MsG0480023319.01.T01:CDS 40.0%
CATCTAATCAAGAAAGCTGG+TGG + Chr4:83698120-83698139 MsG0480023319.01.T01:CDS 40.0%
CATTTGTCGTGCTTTCTTCA+TGG + Chr4:83697964-83697983 MsG0480023319.01.T01:CDS 40.0%
CCTCTTTCTCTATCCAAAAG+AGG - Chr4:83697381-83697400 None:intergenic 40.0%
CGAGAATGTAAAGTCCAACA+TGG + Chr4:83700278-83700297 MsG0480023319.01.T01:CDS 40.0%
CTCAAGCTTGAAAACTTTCC+AGG + Chr4:83697780-83697799 MsG0480023319.01.T01:CDS 40.0%
CTGTGATTCTATAGCTTGGA+AGG + Chr4:83698064-83698083 MsG0480023319.01.T01:CDS 40.0%
CTTGTTGCAGATGCTAAAGA+TGG + Chr4:83698448-83698467 MsG0480023319.01.T01:CDS 40.0%
CTTTCTCTATCCAAAAGAGG+TGG - Chr4:83697378-83697397 None:intergenic 40.0%
GAAAACATCTGACCCCAAAT+TGG - Chr4:83699467-83699486 None:intergenic 40.0%
GACTAAGTTCCAAAGATCCA+GGG - Chr4:83699292-83699311 None:intergenic 40.0%
GAGAACATCAGACATGGATA+GGG + Chr4:83697430-83697449 MsG0480023319.01.T01:intron 40.0%
GATGCTGTGATTCTATAGCT+TGG + Chr4:83698060-83698079 MsG0480023319.01.T01:CDS 40.0%
GCACATTATAAGTGGTTTCC+TGG - Chr4:83697071-83697090 None:intergenic 40.0%
GCAGTAATTCAGCTAAGACT+TGG - Chr4:83698969-83698988 None:intergenic 40.0%
GCATAAAATGATCAATGCGG+AGG - Chr4:83698163-83698182 None:intergenic 40.0%
GGAATGTATGAGGAGTTAGA+AGG + Chr4:83698269-83698288 MsG0480023319.01.T01:CDS 40.0%
GGAATTGGCATTAATGCTGA+AGG + Chr4:83698641-83698660 MsG0480023319.01.T01:intron 40.0%
GGTATTTAAGCAGATGCTAG+TGG - Chr4:83699409-83699428 None:intergenic 40.0%
TAAAAGGCTGACCTTTAGGT+AGG - Chr4:83699040-83699059 None:intergenic 40.0%
TAGAAGGGCTTAGAGGATAT+GGG + Chr4:83698285-83698304 MsG0480023319.01.T01:CDS 40.0%
TAGACAGAGAACATCAGACA+TGG + Chr4:83697424-83697443 MsG0480023319.01.T01:intron 40.0%
TATCATCAGCAGGGTATATG+AGG + Chr4:83697178-83697197 MsG0480023319.01.T01:intron 40.0%
TCAAATGTTTCACATCCACC+TGG - Chr4:83697801-83697820 None:intergenic 40.0%
TCAGACCTTGAAAAGAGAGT+TGG + Chr4:83698503-83698522 MsG0480023319.01.T01:CDS 40.0%
TCATGCAATATGCCAAGAGA+TGG + Chr4:83698240-83698259 MsG0480023319.01.T01:CDS 40.0%
TCCAAACAGTATCATCAGCA+GGG + Chr4:83697169-83697188 MsG0480023319.01.T01:intron 40.0%
TCCTTCCATGTAAAACCAAC+AGG + Chr4:83700414-83700433 MsG0480023319.01.T01:CDS 40.0%
TCTAACTCCTCATACATTCC+TGG - Chr4:83698269-83698288 None:intergenic 40.0%
TGAACCAAAGTATACAACGC+AGG + Chr4:83700122-83700141 MsG0480023319.01.T01:CDS 40.0%
TTAGAAGGGCTTAGAGGATA+TGG + Chr4:83698284-83698303 MsG0480023319.01.T01:CDS 40.0%
TTCCAAACAGTATCATCAGC+AGG + Chr4:83697168-83697187 MsG0480023319.01.T01:intron 40.0%
TTCCATGTAAAACCAACAGG+AGG + Chr4:83700417-83700436 MsG0480023319.01.T01:CDS 40.0%
! AAGAAAGCACGACAAATGTG+AGG - Chr4:83697962-83697981 None:intergenic 40.0%
! AGTTTTCCATCTGCATGGAA+GGG - Chr4:83699543-83699562 None:intergenic 40.0%
! CCATACCAACTCTCTTTTCA+AGG - Chr4:83698511-83698530 None:intergenic 40.0%
! CCTCTTTTGGATAGAGAAAG+AGG + Chr4:83697378-83697397 MsG0480023319.01.T01:intron 40.0%
! CTTTTGGATAGAGAAAGAGG+GGG + Chr4:83697381-83697400 MsG0480023319.01.T01:intron 40.0%
! GTCTTGCATAGTGCAGTTTT+CGG - Chr4:83698791-83698810 None:intergenic 40.0%
! GTGGATCTGGTTCACATTAT+AGG + Chr4:83699984-83700003 MsG0480023319.01.T01:intron 40.0%
! TAGTTTTCCATCTGCATGGA+AGG - Chr4:83699544-83699563 None:intergenic 40.0%
! TATGGTGTTAGAAGATGCTG+AGG + Chr4:83698526-83698545 MsG0480023319.01.T01:CDS 40.0%
! TCTGGTTCACATTATAGGCA+TGG + Chr4:83699989-83700008 MsG0480023319.01.T01:intron 40.0%
! TCTTGCATAGTGCAGTTTTC+GGG - Chr4:83698790-83698809 None:intergenic 40.0%
! TGCGTTGTATACTTTGGTTC+AGG - Chr4:83700123-83700142 None:intergenic 40.0%
! TTCTGTCAGACTGACTTTCA+GGG - Chr4:83696767-83696786 None:intergenic 40.0%
!! AGCCGCATTTTGATATCAAG+GGG - Chr4:83697710-83697729 None:intergenic 40.0%
!! ATGACACATGATTTTGGGGA+GGG - Chr4:83699707-83699726 None:intergenic 40.0%
!! CCTTGAAAAGAGAGTTGGTA+TGG + Chr4:83698508-83698527 MsG0480023319.01.T01:CDS 40.0%
!! GTAGCCGCATTTTGATATCA+AGG - Chr4:83697712-83697731 None:intergenic 40.0%
!! TATGACACATGATTTTGGGG+AGG - Chr4:83699708-83699727 None:intergenic 40.0%
!! TGGTCATTTTCATAAGCCTC+CGG - Chr4:83698699-83698718 None:intergenic 40.0%
!!! TCACTAGTTTTCCATCTGCA+TGG - Chr4:83699548-83699567 None:intergenic 40.0%
!!! TCCTGTTGGTTTTACATGGA+AGG - Chr4:83700418-83700437 None:intergenic 40.0%
!!! TTTTTGGTTTGGGCTTATGC+AGG + Chr4:83697004-83697023 MsG0480023319.01.T01:intron 40.0%
AAAATGATCAATGCGGAGGG+TGG - Chr4:83698159-83698178 None:intergenic 45.0%
AAAGTCTGTTGGGATTCGAG+GGG - Chr4:83697037-83697056 None:intergenic 45.0%
AAGATCCAGGGAACTTTACC+TGG - Chr4:83699280-83699299 None:intergenic 45.0%
AAGCTGGTGGTTCGATGATT+TGG + Chr4:83698133-83698152 MsG0480023319.01.T01:CDS 45.0%
ACAGGAGGTGAAACTAGAGA+TGG + Chr4:83700432-83700451 MsG0480023319.01.T01:CDS 45.0%
ACCCTGCTGATGATACTGTT+TGG - Chr4:83697173-83697192 None:intergenic 45.0%
ACCTGGACAACTGTTCTTAG+AGG - Chr4:83699263-83699282 None:intergenic 45.0%
AGAAATCCCTTCCATGCAGA+TGG + Chr4:83699534-83699553 MsG0480023319.01.T01:intron 45.0%
AGCAATGCAAGAGAAGGAAC+CGG + Chr4:83700176-83700195 MsG0480023319.01.T01:CDS 45.0%
AGCCATTGACACCTACCTAA+AGG + Chr4:83699026-83699045 MsG0480023319.01.T01:CDS 45.0%
ATGGCTACCAGGAATGTATG+AGG + Chr4:83698259-83698278 MsG0480023319.01.T01:CDS 45.0%
CAAAATGCGGCTACATAGGA+CGG + Chr4:83697718-83697737 MsG0480023319.01.T01:CDS 45.0%
CACACACACACAAACACACT+AGG - Chr4:83697324-83697343 None:intergenic 45.0%
CAGGCTGGAGTTTAAATTGG+CGG + Chr4:83700379-83700398 MsG0480023319.01.T01:CDS 45.0%
CCTCCCTATAGACTTCAACT+CGG + Chr4:83697845-83697864 MsG0480023319.01.T01:CDS 45.0%
CTCCAGCCTGATAGATTCTT+TGG - Chr4:83700369-83700388 None:intergenic 45.0%
CTCTATCCAAAAGAGGTGGT+GGG - Chr4:83697374-83697393 None:intergenic 45.0%
GAAAAGTCTGTTGGGATTCG+AGG - Chr4:83697039-83697058 None:intergenic 45.0%
GACCTTTAGGTAGGTGTCAA+TGG - Chr4:83699031-83699050 None:intergenic 45.0%
GAGCTAATTGCTGCAAGCTT+GGG - Chr4:83696702-83696721 None:intergenic 45.0%
GATCTGTTGCAACTTCAGCT+AGG - Chr4:83698924-83698943 None:intergenic 45.0%
GGAACCAAACCAGAGATCAT+TGG + Chr4:83698209-83698228 MsG0480023319.01.T01:CDS 45.0%
GGGAAAATTTCCCTCAAGAG+AGG + Chr4:83697401-83697420 MsG0480023319.01.T01:intron 45.0%
GGTAAAGTTCCCTGGATCTT+TGG + Chr4:83699280-83699299 MsG0480023319.01.T01:intron 45.0%
GTTCTGCAGTTCTACCATGT+TGG - Chr4:83700295-83700314 None:intergenic 45.0%
TAAAAATGAGCCCGCAAGTG+AGG + Chr4:83698091-83698110 MsG0480023319.01.T01:CDS 45.0%
TCTACGGTCTTGGTCAGTTA+GGG - Chr4:83699165-83699184 None:intergenic 45.0%
TCTATCCAAAAGAGGTGGTG+GGG - Chr4:83697373-83697392 None:intergenic 45.0%
TCTCTATCCAAAAGAGGTGG+TGG - Chr4:83697375-83697394 None:intergenic 45.0%
TCTCTGTCTACCTCTCTTGA+GGG - Chr4:83697414-83697433 None:intergenic 45.0%
TGAGCTAATTGCTGCAAGCT+TGG - Chr4:83696703-83696722 None:intergenic 45.0%
TGCAACTGCAACAAAAGTCC+GGG + Chr4:83698866-83698885 MsG0480023319.01.T01:CDS 45.0%
TGTGAGGAAAGCTTCAGTCT+TGG - Chr4:83697946-83697965 None:intergenic 45.0%
TTCTACGGTCTTGGTCAGTT+AGG - Chr4:83699166-83699185 None:intergenic 45.0%
TTCTCTGTCTACCTCTCTTG+AGG - Chr4:83697415-83697434 None:intergenic 45.0%
TTGGTCAGTTAGGGAAGGAT+GGG - Chr4:83699156-83699175 None:intergenic 45.0%
! ACTTTCAGGGTCTTGTGCTT+GGG - Chr4:83696754-83696773 None:intergenic 45.0%
! GAGTTGATTCCACTTTGTGC+CGG - Chr4:83700198-83700217 None:intergenic 45.0%
! GCATGGCATCTAAGATAGTG+TGG + Chr4:83700006-83700025 MsG0480023319.01.T01:intron 45.0%
! GTTCTGTCAGACTGACTTTC+AGG - Chr4:83696768-83696787 None:intergenic 45.0%
! TCTCTAGTTTCACCTCCTGT+TGG - Chr4:83700432-83700451 None:intergenic 45.0%
!! AGAGAGCACTAGACATAGCA+AGG + Chr4:83698355-83698374 MsG0480023319.01.T01:CDS 45.0%
!!! CACCTCCTGTTGGTTTTACA+TGG - Chr4:83700422-83700441 None:intergenic 45.0%
!!! GTGCAGTTTTCGGGTGAATT+AGG - Chr4:83698781-83698800 None:intergenic 45.0%
AGATGCTGCATCCTCACTTG+CGG - Chr4:83698105-83698124 None:intergenic 50.0%
CATGGGACAGCATCTTGTTG+AGG - Chr4:83698422-83698441 None:intergenic 50.0%
CATTCCTGGTAGCCATCTCT+TGG - Chr4:83698255-83698274 None:intergenic 50.0%
CTTGGTCAGTTAGGGAAGGA+TGG - Chr4:83699157-83699176 None:intergenic 50.0%
GAGAGCAGCAATGCAAGAGA+AGG + Chr4:83700170-83700189 MsG0480023319.01.T01:CDS 50.0%
GAGGAGTTAGAAGGGCTTAG+AGG + Chr4:83698278-83698297 MsG0480023319.01.T01:CDS 50.0%
GATCTACGACGAGTGTGGTT+TGG - Chr4:83700477-83700496 None:intergenic 50.0%
GTTGTCCAGGTAAAGTTCCC+TGG + Chr4:83699272-83699291 MsG0480023319.01.T01:intron 50.0%
TATGCCAAGAGATGGCTACC+AGG + Chr4:83698248-83698267 MsG0480023319.01.T01:CDS 50.0%
TGCAGAGTCTTCTACGGTCT+TGG - Chr4:83699175-83699194 None:intergenic 50.0%
! CCGAGTTGAAGTCTATAGGG+AGG - Chr4:83697848-83697867 None:intergenic 50.0%
! GACTTTCAGGGTCTTGTGCT+TGG - Chr4:83696755-83696774 None:intergenic 50.0%
! GCCTCTAAGAACAGTTGTCC+AGG + Chr4:83699259-83699278 MsG0480023319.01.T01:CDS 50.0%
!! ACGAGTGTGGTTTGGTGATG+TGG - Chr4:83700469-83700488 None:intergenic 50.0%
!! CGAGTGTGGTTTGGTGATGT+GGG - Chr4:83700468-83700487 None:intergenic 50.0%
ACACGGAGAGCCTTCTTCTC+GGG - Chr4:83700503-83700522 None:intergenic 55.0%
ATGCGGCTACATAGGACGGT+CGG + Chr4:83697722-83697741 MsG0480023319.01.T01:CDS 55.0%
CGGTCTTGGTCAGTTAGGGA+AGG - Chr4:83699161-83699180 None:intergenic 55.0%
GACACGGAGAGCCTTCTTCT+CGG - Chr4:83700504-83700523 None:intergenic 55.0%
GAGAAGGAACCGGCACAAAG+TGG + Chr4:83700186-83700205 MsG0480023319.01.T01:CDS 55.0%
GATGCTGCATCCTCACTTGC+GGG - Chr4:83698104-83698123 None:intergenic 55.0%
GGGACAGCATCTTGTTGAGG+AGG - Chr4:83698419-83698438 None:intergenic 55.0%
GGGCTTAGAGGATATGGGCA+TGG + Chr4:83698290-83698309 MsG0480023319.01.T01:CDS 55.0%
GTAGATCAGCCCCGAGAAGA+AGG + Chr4:83700490-83700509 MsG0480023319.01.T01:CDS 55.0%
!! ATCCAAAAGAGGTGGTGGGG+TGG - Chr4:83697370-83697389 None:intergenic 55.0%
!! TCCAAAAGAGGTGGTGGGGT+GGG - Chr4:83697369-83697388 None:intergenic 55.0%
CACGGAGAGCCTTCTTCTCG+GGG - Chr4:83700502-83700521 None:intergenic 60.0%
GGGCTGATCTACGACGAGTG+TGG - Chr4:83700482-83700501 None:intergenic 60.0%
! TCCCACCCCACCACCTCTTT+TGG + Chr4:83697365-83697384 MsG0480023319.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 83696629 83700527 83696629 ID=MsG0480023319.01;Name=MsG0480023319.01
Chr4 mRNA 83696629 83700527 83696629 ID=MsG0480023319.01.T01;Parent=MsG0480023319.01;Name=MsG0480023319.01.T01;_AED=0.30;_eAED=0.31;_QI=103|0.6|0.5|1|1|1|6|0|641
Chr4 exon 83696629 83696868 83696629 ID=MsG0480023319.01.T01:exon:5943;Parent=MsG0480023319.01.T01
Chr4 exon 83697026 83697095 83697026 ID=MsG0480023319.01.T01:exon:5944;Parent=MsG0480023319.01.T01
Chr4 exon 83697705 83698603 83697705 ID=MsG0480023319.01.T01:exon:5945;Parent=MsG0480023319.01.T01
Chr4 exon 83698774 83699047 83698774 ID=MsG0480023319.01.T01:exon:5946;Parent=MsG0480023319.01.T01
Chr4 exon 83699152 83699280 83699152 ID=MsG0480023319.01.T01:exon:5947;Parent=MsG0480023319.01.T01
Chr4 exon 83700111 83700527 83700111 ID=MsG0480023319.01.T01:exon:5948;Parent=MsG0480023319.01.T01
Chr4 five_prime_UTR 83696629 83696731 83696629 ID=MsG0480023319.01.T01:five_prime_utr;Parent=MsG0480023319.01.T01
Chr4 CDS 83696732 83696868 83696732 ID=MsG0480023319.01.T01:cds;Parent=MsG0480023319.01.T01
Chr4 CDS 83697026 83697095 83697026 ID=MsG0480023319.01.T01:cds;Parent=MsG0480023319.01.T01
Chr4 CDS 83697705 83698603 83697705 ID=MsG0480023319.01.T01:cds;Parent=MsG0480023319.01.T01
Chr4 CDS 83698774 83699047 83698774 ID=MsG0480023319.01.T01:cds;Parent=MsG0480023319.01.T01
Chr4 CDS 83699152 83699280 83699152 ID=MsG0480023319.01.T01:cds;Parent=MsG0480023319.01.T01
Chr4 CDS 83700111 83700527 83700111 ID=MsG0480023319.01.T01:cds;Parent=MsG0480023319.01.T01
Gene Sequence

>MsG0480023319.01.T01

ATGAAATCACTTCAAGTGGCCCAAGCACAAGACCCTGAAAGTCAGTCTGACAGAACTGAACAAGTTTCAGATAAAAGCATAGTTATTCCCAACAAACATGTCACAATAGCTGATAGCATAAAAAATGAACATTCAAGGTTCGTTGCCCCTCGAATCCCAACAGACTTTTCAATTCAAGTCCAGGAAACCACTTATAATGTGCACAAGTACCCCTTGATATCAAAATGCGGCTACATAGGACGGTCGGAAGTACAGCCTCTAATCTCAAATTCTGGGAATGTGCTCAAGCTTGAAAACTTTCCAGGTGGATGTGAAACATTTGAAACAATTCTAAAATTCTGTTATGGCCTCCCTATAGACTTCAACTCGGATAATGTAGCTGCACTAAGATGTGCATCAGAATTTCTAGAGATGACTGAAGAACTAGAAGATGGCAATCTCATTTCCAAGACTGAAGCTTTCCTCACATTTGTCGTGCTTTCTTCATGGAAAGACACTGTTACTGTTCTGAAATCTTGTGAAAATCTATCTCCATGGGCTGAAAATATCCAAATTGTTAGAAGATGCTGTGATTCTATAGCTTGGAAGGCTACTAAAAATGAGCCCGCAAGTGAGGATGCAGCATCTAATCAAGAAAGCTGGTGGTTCGATGATTTGGCCACCCTCCGCATTGATCATTTTATGCGGATAATTTCAGCAATTAGGGCAAAGGGAACCAAACCAGAGATCATTGGTAAATGTATCATGCAATATGCCAAGAGATGGCTACCAGGAATGTATGAGGAGTTAGAAGGGCTTAGAGGATATGGGCATGGAAAAAGTAATCTACAGTTCACTATATTTAGCATGAAGAAAGAAGAGAGCACTAGACATAGCAAGGAGCAAACGACTATTATTGAAAGCCTAATAAGCATAATTCCTCCTCAACAAGATGCTGTCCCATGTAAGTTCTTGTTGCAGATGCTAAAGATGGCAATGATGTATTCTGTATCATCAGCTCTCATTTCAGACCTTGAAAAGAGAGTTGGTATGGTGTTAGAAGATGCTGAGGTGAATGATCTCTTAATTCCTAGATATCAAAATGGAGGTCAAGGAAAAATGGTCAACATGCCTAATTCACCCGAAAACTGCACTATGCAAGACATAGATGTGGTACAACGGATTGTTGAATACTTCTTGATGCATGAAAAACAGCAAATGCAACTGCAACAAAAGTCCGGGAAATTCAATATTAGTAGGCTTTTGGACAATTACCTAGCTGAAGTTGCAACAGATCCAAATCTTTCAATTACAATGTTCCAAGTCTTAGCTGAATTACTGCCAGAACATACTCGATCATTTCACGATGGTCTATATAGAGCCATTGACACCTACCTAAAGACCCATCCTTCCCTAACTGACCAAGACCGTAGAAGACTCTGCAAAATAATGAACTGTGAAAAACTCTCACTTGATGCATGCATACATGCTGCACAAAATGATAGATTGCCTCTAAGAACAGTTGTCCAGAAATTGTCACCTGAACCAAAGTATACAACGCAGGTTCTATTTGCAGAGCAAGTAAAGATGAGAGCAGCAATGCAAGAGAAGGAACCGGCACAAAGTGGAATCAACTCTCAACAGGATGTAAACCAGACATCTGAAACTATAGACATAAAAACACTCAAAGCAGAACTCGAGAATGTAAAGTCCAACATGGTAGAACTGCAGAACGACTACTTTGAGTTGCAAGAAGAGTATAAAAAGTTAACTAGCAACGACAAACCAAAGAATCTATCAGGCTGGAGTTTAAATTGGCGGAAGATCAAGAAATCCTTCCATGTAAAACCAACAGGAGGTGAAACTAGAGATGGACAAGATATGCCCACATCACCAAACCACACTCGTCGTAGATCAGCCCCGAGAAGAAGGCTCTCCGTGTCTTAA

Protein sequence

>MsG0480023319.01.T01

MKSLQVAQAQDPESQSDRTEQVSDKSIVIPNKHVTIADSIKNEHSRFVAPRIPTDFSIQVQETTYNVHKYPLISKCGYIGRSEVQPLISNSGNVLKLENFPGGCETFETILKFCYGLPIDFNSDNVAALRCASEFLEMTEELEDGNLISKTEAFLTFVVLSSWKDTVTVLKSCENLSPWAENIQIVRRCCDSIAWKATKNEPASEDAASNQESWWFDDLATLRIDHFMRIISAIRAKGTKPEIIGKCIMQYAKRWLPGMYEELEGLRGYGHGKSNLQFTIFSMKKEESTRHSKEQTTIIESLISIIPPQQDAVPCKFLLQMLKMAMMYSVSSALISDLEKRVGMVLEDAEVNDLLIPRYQNGGQGKMVNMPNSPENCTMQDIDVVQRIVEYFLMHEKQQMQLQQKSGKFNISRLLDNYLAEVATDPNLSITMFQVLAELLPEHTRSFHDGLYRAIDTYLKTHPSLTDQDRRRLCKIMNCEKLSLDACIHAAQNDRLPLRTVVQKLSPEPKYTTQVLFAEQVKMRAAMQEKEPAQSGINSQQDVNQTSETIDIKTLKAELENVKSNMVELQNDYFELQEEYKKLTSNDKPKNLSGWSLNWRKIKKSFHVKPTGGETRDGQDMPTSPNHTRRRSAPRRRLSVS*