AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026073.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026073.01.T01 MTR_5g038970 94.472 199 10 1 1 198 1 199 6.32e-135 376
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026073.01.T01 AT1G14345 78.417 139 28 2 61 198 59 196 1.93e-76 228

Find 69 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGAATTCTCAGGTTT+TGG 0.237091 5:-30197031 MsG0580026073.01.T01:CDS
CAGGTTGTTCCTAGGTTTAT+TGG 0.243976 5:-30197156 MsG0580026073.01.T01:CDS
CTAAGAGTGAGTGTTATTTC+AGG 0.245187 5:-30197231 MsG0580026073.01.T01:CDS
TGTGGATGTGGTAGGGGTTG+TGG 0.247060 5:+30197419 None:intergenic
GTGCACTTTACCTACGTTAC+AGG 0.269722 5:-30197263 MsG0580026073.01.T01:CDS
GTGGATGTGGTAGGGGTTGT+GGG 0.271455 5:+30197420 None:intergenic
GGTGTGGTTGTGGTGGTTGA+TGG 0.281173 5:+30197533 None:intergenic
CTGAAATAACACTCACTCTT+AGG 0.291915 5:+30197232 None:intergenic
GGGGTTGTGGGCTTGTTTGT+TGG 0.299097 5:+30197432 None:intergenic
TTTACGGTTGTGGGTGGAGG+TGG 0.315642 5:+30197485 None:intergenic
TTCCTAGGTTTATTGGTGAA+TGG 0.317822 5:-30197149 MsG0580026073.01.T01:CDS
GGGGTTGGAGGGTGTGGTTG+TGG 0.332045 5:+30197523 None:intergenic
TGGTTGATGGTGGTGGTTGT+TGG 0.333417 5:+30197546 None:intergenic
AAGAAAATGGTTTCTGCATT+GGG 0.346516 5:+30197378 None:intergenic
GTTGGAGGGTGTGGTTGTGG+TGG 0.352309 5:+30197526 None:intergenic
GTGGTTGTGTGGATGTGGTA+GGG 0.363059 5:+30197412 None:intergenic
TAGTGTTATCAAAGATGTTC+AGG 0.370339 5:-30197175 MsG0580026073.01.T01:CDS
TGTGGTGAGTTTACGGTTGT+GGG 0.371948 5:+30197476 None:intergenic
TTGTGGTGAGTTTACGGTTG+TGG 0.379941 5:+30197475 None:intergenic
GGTGGTTGTGTGGATGTGGT+AGG 0.382236 5:+30197411 None:intergenic
AGCTCCACCGTCGAAGAAAA+TGG 0.382938 5:+30197365 None:intergenic
TCCTAGGTTTATTGGTGAAT+GGG 0.386223 5:-30197148 MsG0580026073.01.T01:CDS
AAATAAAATCAAAAGCCTTT+AGG 0.404905 5:+30196997 None:intergenic
TGAAACTGCTGCTAGTGTTA+AGG 0.412622 5:+30197287 None:intergenic
GGAAGAGGGGTTGGAGGGTG+TGG 0.412714 5:+30197517 None:intergenic
AGTGTTATTTCAGGCTTAAC+GGG 0.414099 5:-30197222 MsG0580026073.01.T01:CDS
GAAACTGCTGCTAGTGTTAA+GGG 0.418053 5:+30197288 None:intergenic
GAGTGTTATTTCAGGCTTAA+CGG 0.418536 5:-30197223 MsG0580026073.01.T01:CDS
TGTGGGCTTGTTTGTTGGTG+AGG 0.420960 5:+30197437 None:intergenic
AATTCCAAGTTTATTTCAAA+CGG 0.421295 5:-30197620 MsG0580026073.01.T01:exon
TGGTTGTGTGGATGTGGTAG+GGG 0.423031 5:+30197413 None:intergenic
TTAGCAATTTCTCTAAACTT+AGG 0.423972 5:+30197072 None:intergenic
TAAGTATTGTTTGTCTATGA+AGG 0.424827 5:-30197052 MsG0580026073.01.T01:CDS
GAAGAAAATGGTTTCTGCAT+TGG 0.426486 5:+30197377 None:intergenic
TTACGGTTGTGGGTGGAGGT+GGG 0.431500 5:+30197486 None:intergenic
TACTCGGCTTCACTCTTGTA+TGG 0.433021 5:-30197314 MsG0580026073.01.T01:CDS
GAGTTTACGGTTGTGGGTGG+AGG 0.435485 5:+30197482 None:intergenic
TTGATGGTGGTGGTTGTTGG+TGG 0.448728 5:+30197549 None:intergenic
TTGGATCAATCTGGTCCTAA+AGG 0.450236 5:-30197012 MsG0580026073.01.T01:CDS
ATGGTACAAAGGTTGATCTT+AGG 0.451687 5:-30197101 MsG0580026073.01.T01:CDS
TTATCCGTTTGAAATAAACT+TGG 0.457295 5:+30197616 None:intergenic
GTTTGATGAGGAAGAGGGGT+TGG 0.457551 5:+30197508 None:intergenic
AGGTGGTGGTTGTGTGGATG+TGG 0.459887 5:+30197407 None:intergenic
GTGGTTGTGGTGGTTGATGG+TGG 0.462739 5:+30197536 None:intergenic
TGATGAGGAAGAGGGGTTGG+AGG 0.465797 5:+30197511 None:intergenic
ATTGTTATTACATTAAAAGA+TGG 0.465933 5:-30197120 MsG0580026073.01.T01:CDS
GTTGTGGTGGTTGATGGTGG+TGG 0.466674 5:+30197539 None:intergenic
GGTGGGTTTGATGAGGAAGA+GGG 0.474274 5:+30197503 None:intergenic
GATGAGGAAGAGGGGTTGGA+GGG 0.483645 5:+30197512 None:intergenic
TATGAAGGAGAAGAATTCTC+AGG 0.492519 5:-30197037 MsG0580026073.01.T01:CDS
GGGTGGAGGTGGGTTTGATG+AGG 0.494426 5:+30197496 None:intergenic
AAGATGTTCAGGTTGTTCCT+AGG 0.508304 5:-30197164 MsG0580026073.01.T01:CDS
CTCATCACCAACCTCCTACT+CGG 0.528547 5:-30197330 MsG0580026073.01.T01:CDS
AGGTGGGTTTGATGAGGAAG+AGG 0.533100 5:+30197502 None:intergenic
GGTGAGTTTACGGTTGTGGG+TGG 0.544615 5:+30197479 None:intergenic
TTCGACGGTGGAGCTCACTA+CGG 0.545684 5:-30197357 MsG0580026073.01.T01:CDS
TATTTCAGGCTTAACGGGTG+AGG 0.547577 5:-30197217 MsG0580026073.01.T01:CDS
TACATTAAAAGATGGTACAA+AGG 0.555819 5:-30197112 MsG0580026073.01.T01:CDS
CGAGTAGGAGGTTGGTGATG+AGG 0.561148 5:+30197331 None:intergenic
CCTAGGTTTATTGGTGAATG+GGG 0.564165 5:-30197147 MsG0580026073.01.T01:CDS
GTGGGTTTGATGAGGAAGAG+GGG 0.565343 5:+30197504 None:intergenic
CAAGAGTGAAGCCGAGTAGG+AGG 0.565864 5:+30197319 None:intergenic
AGTGAAGCCGAGTAGGAGGT+TGG 0.574847 5:+30197323 None:intergenic
AATAACACTCACTCTTAGGT+TGG 0.579943 5:+30197236 None:intergenic
ATACAAGAGTGAAGCCGAGT+AGG 0.584381 5:+30197316 None:intergenic
GGTTGGTGAACCTGTAACGT+AGG 0.615503 5:+30197253 None:intergenic
GTTGTTGGTGGTGATAAGAG+AGG 0.626805 5:+30197561 None:intergenic
TTGTTGGTGAGGATGAGACG+TGG 0.634180 5:+30197448 None:intergenic
CCCCATTCACCAATAAACCT+AGG 0.651079 5:+30197147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTACAAAAATATAAAAT+GGG + Chr5:30197607-30197626 None:intergenic 10.0%
!! TAGTTTACAAAAATATAAAA+TGG + Chr5:30197608-30197627 None:intergenic 10.0%
!!! CATTTTTAATTTAATGATAA+TGG - Chr5:30196052-30196071 MsG0580026073.01.T01:intron 10.0%
!!! TCATATTAAGTTTTTATATT+TGG - Chr5:30196371-30196390 MsG0580026073.01.T01:intron 10.0%
!! ACAAATATTGTTTAGATAAA+TGG + Chr5:30197392-30197411 None:intergenic 15.0%
!!! ACATTTTTGGATTAATTTTA+TGG - Chr5:30195987-30196006 MsG0580026073.01.T01:intron 15.0%
!!! ATTGTTATTACATTAAAAGA+TGG - Chr5:30195787-30195806 MsG0580026073.01.T01:intron 15.0%
!!! GTTTTTTTCTTTTTCTATTA+TGG + Chr5:30195230-30195249 None:intergenic 15.0%
!!! TTTACTTCTTTATACATTTT+TGG - Chr5:30195974-30195993 MsG0580026073.01.T01:intron 15.0%
!! AAATAAAATCAAAAGCCTTT+AGG + Chr5:30195913-30195932 None:intergenic 20.0%
!! AACAATATTTGTGATACATA+TGG - Chr5:30197400-30197419 MsG0580026073.01.T01:CDS 20.0%
!! AATTCCAAGTTTATTTCAAA+CGG - Chr5:30195287-30195306 MsG0580026073.01.T01:exon 20.0%
!! CAAACTTATCCTTAAAAATT+CGG - Chr5:30196395-30196414 MsG0580026073.01.T01:intron 20.0%
!! CTAACTCATTCTTATAAAAT+TGG - Chr5:30196244-30196263 MsG0580026073.01.T01:intron 20.0%
!! GTAACTATATTAAGAAATTC+TGG + Chr5:30197111-30197130 None:intergenic 20.0%
!! TTAGTTAGTTATGACTTATT+AGG - Chr5:30196182-30196201 MsG0580026073.01.T01:intron 20.0%
!!! ATTAACATTTGAAATCACAT+AGG - Chr5:30196975-30196994 MsG0580026073.01.T01:intron 20.0%
!!! GGCTTTTGATTTTATTTTTT+TGG - Chr5:30195916-30195935 MsG0580026073.01.T01:intron 20.0%
!!! TGATTTTATTTTTTTGGTAC+AGG - Chr5:30195922-30195941 MsG0580026073.01.T01:intron 20.0%
!!! TTAACATTTGAAATCACATA+GGG - Chr5:30196976-30196995 MsG0580026073.01.T01:intron 20.0%
!!! TTTATTATGTAACCGTTTTT+AGG + Chr5:30197073-30197092 None:intergenic 20.0%
! AAATAAGTAACTTAGTCGAA+TGG + Chr5:30196917-30196936 None:intergenic 25.0%
! AAATAGCCAAATAAGATCAT+AGG - Chr5:30197675-30197694 MsG0580026073.01.T01:exon 25.0%
! AAGAATCCTATGATCTTATT+TGG + Chr5:30197684-30197703 None:intergenic 25.0%
! AGTGTTAAGTAACTTTGTAA+GGG - Chr5:30196662-30196681 MsG0580026073.01.T01:intron 25.0%
! GACTAAGTTACTTATTTGTT+AGG - Chr5:30196920-30196939 MsG0580026073.01.T01:intron 25.0%
! GATAACAGAAAAAACACAAA+TGG - Chr5:30195309-30195328 MsG0580026073.01.T01:exon 25.0%
! GATGTATTTGATCCTAAAAA+CGG - Chr5:30197058-30197077 MsG0580026073.01.T01:CDS 25.0%
! TAATTTCCACCAATATGTAA+TGG + Chr5:30196959-30196978 None:intergenic 25.0%
! TACATTAAAAGATGGTACAA+AGG - Chr5:30195795-30195814 MsG0580026073.01.T01:intron 25.0%
! TAGTGTTAAGTAACTTTGTA+AGG - Chr5:30196661-30196680 MsG0580026073.01.T01:intron 25.0%
! TATCAAATCAACTTCTATGT+TGG + Chr5:30197133-30197152 None:intergenic 25.0%
! TGGAATTTGAGTAATATACA+TGG - Chr5:30196072-30196091 MsG0580026073.01.T01:intron 25.0%
! TTAGCAATTTCTCTAAACTT+AGG + Chr5:30195838-30195857 None:intergenic 25.0%
!! AACGTATGCATCTTTAATTT+AGG - Chr5:30196281-30196300 MsG0580026073.01.T01:intron 25.0%
!! AACTCTTTCATATACCTTTT+CGG - Chr5:30196717-30196736 MsG0580026073.01.T01:intron 25.0%
!! AATAAACTTGGAATTTTCAG+TGG + Chr5:30195282-30195301 None:intergenic 25.0%
!! ACGTATGCATCTTTAATTTA+GGG - Chr5:30196282-30196301 MsG0580026073.01.T01:intron 25.0%
!! ATCTTTAATTTAGGGTGATT+GGG - Chr5:30196290-30196309 MsG0580026073.01.T01:intron 25.0%
!! GATTCTAATTTTCCAGTAAT+AGG + Chr5:30197543-30197562 None:intergenic 25.0%
!! TAAGTATTGTTTGTCTATGA+AGG - Chr5:30195855-30195874 MsG0580026073.01.T01:intron 25.0%
!! TTATCCGTTTGAAATAAACT+TGG + Chr5:30195294-30195313 MsG0580026074.01.T01:CDS 25.0%
!! TTTGTTATGCCATTACATAT+TGG - Chr5:30196947-30196966 MsG0580026073.01.T01:intron 25.0%
!!! AATATTTTTTTCCGTCCTAA+AGG + Chr5:30196222-30196241 None:intergenic 25.0%
AAGAAAATGGTTTCTGCATT+GGG + Chr5:30195532-30195551 MsG0580026074.01.T01:CDS 30.0%
AGCTATCAACTATAAGCTAT+CGG - Chr5:30196783-30196802 MsG0580026073.01.T01:intron 30.0%
AGGATCAAATACATCTTACT+AGG + Chr5:30197053-30197072 None:intergenic 30.0%
AGTTAAGTACTTCATGATCA+CGG - Chr5:30197629-30197648 MsG0580026073.01.T01:exon 30.0%
CTTCCTCTAGTTATATTGTT+AGG - Chr5:30196597-30196616 MsG0580026073.01.T01:intron 30.0%
CTTGTGATAGTTGGTTATAT+GGG - Chr5:30196418-30196437 MsG0580026073.01.T01:intron 30.0%
GCTATGTTTGGTAAAAACAT+CGG + Chr5:30196851-30196870 None:intergenic 30.0%
GGATCAAATACATCTTACTA+GGG + Chr5:30197052-30197071 None:intergenic 30.0%
GTGTTAAGTAACTTTGTAAG+GGG - Chr5:30196663-30196682 MsG0580026073.01.T01:intron 30.0%
TAGTGTTATCAAAGATGTTC+AGG - Chr5:30195732-30195751 MsG0580026073.01.T01:intron 30.0%
TCATACATTTCTCCTATTAC+TGG - Chr5:30197528-30197547 MsG0580026073.01.T01:CDS 30.0%
TCTCAATGATTCTCTACAAA+GGG - Chr5:30197341-30197360 MsG0580026073.01.T01:CDS 30.0%
! CATCTTTAATTTAGGGTGAT+TGG - Chr5:30196289-30196308 MsG0580026073.01.T01:intron 30.0%
! TATCACAAGCCGAATTTTTA+AGG + Chr5:30196407-30196426 None:intergenic 30.0%
! TTATATGGGCTATTCTTGAA+TGG - Chr5:30196432-30196451 MsG0580026073.01.T01:intron 30.0%
AAACATACAAGACACCGAAA+AGG + Chr5:30196734-30196753 None:intergenic 35.0%
AAAGAGGTAACTTAGTGGTA+TGG + Chr5:30196880-30196899 None:intergenic 35.0%
AAGTAGCAAGTAGAGCTTAA+TGG + Chr5:30196327-30196346 None:intergenic 35.0%
AATAACACTCACTCTTAGGT+TGG + Chr5:30195674-30195693 None:intergenic 35.0%
AGAATCATGAAGCTTGTAGA+AGG - Chr5:30197557-30197576 MsG0580026073.01.T01:CDS 35.0%
AGAATCATTGAGACCAGAAA+GGG + Chr5:30197334-30197353 None:intergenic 35.0%
AGTAGAGCTTAATGGTGTAA+TGG + Chr5:30196319-30196338 None:intergenic 35.0%
ATACCACTAAGTTACCTCTT+TGG - Chr5:30196879-30196898 MsG0580026073.01.T01:intron 35.0%
ATCCATAACAAACTGCTTGT+TGG + Chr5:30196112-30196131 None:intergenic 35.0%
ATGACTTATTAGGCGATAGT+TGG - Chr5:30196192-30196211 MsG0580026073.01.T01:intron 35.0%
CATTAGGTAAAGCTACAACT+AGG - Chr5:30196814-30196833 MsG0580026073.01.T01:intron 35.0%
CCTCTAGTTATATTGTTAGG+CGG - Chr5:30196600-30196619 MsG0580026073.01.T01:intron 35.0%
CTCAATGATTCTCTACAAAG+GGG - Chr5:30197342-30197361 MsG0580026073.01.T01:CDS 35.0%
CTGAAATAACACTCACTCTT+AGG + Chr5:30195678-30195697 None:intergenic 35.0%
GAAGAAAATGGTTTCTGCAT+TGG + Chr5:30195533-30195552 MsG0580026074.01.T01:CDS 35.0%
GAATCATGAAGCTTGTAGAA+GGG - Chr5:30197558-30197577 MsG0580026073.01.T01:CDS 35.0%
GCTTGTGATAGTTGGTTATA+TGG - Chr5:30196417-30196436 MsG0580026073.01.T01:intron 35.0%
GTACTTAGAAACACACAATG+AGG + Chr5:30196548-30196567 None:intergenic 35.0%
GTCTCAATGATTCTCTACAA+AGG - Chr5:30197340-30197359 MsG0580026073.01.T01:CDS 35.0%
GTTATGCCATTACATATTGG+TGG - Chr5:30196950-30196969 MsG0580026073.01.T01:intron 35.0%
TAACTAGAGGAAGTCTTTCA+TGG + Chr5:30196590-30196609 None:intergenic 35.0%
TAACTTAGTGGTATGGAGTA+AGG + Chr5:30196873-30196892 None:intergenic 35.0%
TACCACTAAGTTACCTCTTT+GGG - Chr5:30196880-30196899 MsG0580026073.01.T01:intron 35.0%
TATGAAGGAGAAGAATTCTC+AGG - Chr5:30195870-30195889 MsG0580026073.01.T01:intron 35.0%
TCCTAGGTTTATTGGTGAAT+GGG - Chr5:30195759-30195778 MsG0580026073.01.T01:intron 35.0%
TGTCTCTGCAAAATAGAAGA+AGG + Chr5:30197453-30197472 None:intergenic 35.0%
TTCCTAGGTTTATTGGTGAA+TGG - Chr5:30195758-30195777 MsG0580026073.01.T01:intron 35.0%
! AAAATTCGGCTTGTGATAGT+TGG - Chr5:30196409-30196428 MsG0580026073.01.T01:intron 35.0%
! ATCACATAGGGTCTGAATTT+TGG - Chr5:30196988-30197007 MsG0580026073.01.T01:exon 35.0%
! ATCGAGATCGTGATGATTTT+TGG + Chr5:30197254-30197273 None:intergenic 35.0%
! ATGGTACAAAGGTTGATCTT+AGG - Chr5:30195806-30195825 MsG0580026073.01.T01:intron 35.0%
! ATTAAGCTCTACTTGCTACT+TGG - Chr5:30196326-30196345 MsG0580026073.01.T01:intron 35.0%
! TAGTTGGTTATCCTTTAGGA+CGG - Chr5:30196208-30196227 MsG0580026073.01.T01:intron 35.0%
!! AGTGTTATTTCAGGCTTAAC+GGG - Chr5:30195685-30195704 MsG0580026073.01.T01:intron 35.0%
!! CTAAGAGTGAGTGTTATTTC+AGG - Chr5:30195676-30195695 MsG0580026073.01.T01:intron 35.0%
!! GAGTGTTATTTCAGGCTTAA+CGG - Chr5:30195684-30195703 MsG0580026073.01.T01:intron 35.0%
!! TACCAACAAGCAGTTTGTTA+TGG - Chr5:30196107-30196126 MsG0580026073.01.T01:intron 35.0%
!! TCGGTGTCTTGTATGTTTTA+AGG - Chr5:30196736-30196755 MsG0580026073.01.T01:intron 35.0%
AACATCTTCCTTTGAGCCAT+GGG - Chr5:30197485-30197504 MsG0580026073.01.T01:CDS 40.0%
AAGAATGTCAGCTCCAAACT+CGG - Chr5:30197302-30197321 MsG0580026073.01.T01:CDS 40.0%
AGACCAAACATACAGGGTTT+AGG - Chr5:30196460-30196479 MsG0580026073.01.T01:intron 40.0%
AGTTATATTGTTAGGCGGAG+TGG - Chr5:30196605-30196624 MsG0580026073.01.T01:intron 40.0%
CAGGTTGTTCCTAGGTTTAT+TGG - Chr5:30195751-30195770 MsG0580026073.01.T01:intron 40.0%
CCGCCTAACAATATAACTAG+AGG + Chr5:30196603-30196622 None:intergenic 40.0%
CCTAGGTTTATTGGTGAATG+GGG - Chr5:30195760-30195779 MsG0580026073.01.T01:intron 40.0%
GAAACTGCTGCTAGTGTTAA+GGG + Chr5:30195622-30195641 MsG0580026074.01.T01:CDS 40.0%
GAGAATCATTGAGACCAGAA+AGG + Chr5:30197335-30197354 None:intergenic 40.0%
GCGATAGTTGGTTATCCTTT+AGG - Chr5:30196204-30196223 MsG0580026073.01.T01:intron 40.0%
GCTATCGGTCATCAATCATT+AGG - Chr5:30196798-30196817 MsG0580026073.01.T01:intron 40.0%
GGAATAACACATTCCCAAAG+AGG + Chr5:30196896-30196915 None:intergenic 40.0%
GTATGGAGTAAGGCTATGTT+TGG + Chr5:30196863-30196882 None:intergenic 40.0%
GTCACAAGACCAAACATACA+GGG - Chr5:30196454-30196473 MsG0580026073.01.T01:intron 40.0%
TGAAACTGCTGCTAGTGTTA+AGG + Chr5:30195623-30195642 MsG0580026074.01.T01:CDS 40.0%
TGCAATTATGAACACACCCA+TGG + Chr5:30197504-30197523 None:intergenic 40.0%
TTCCCAAAGAGGTAACTTAG+TGG + Chr5:30196885-30196904 None:intergenic 40.0%
TTGGATCAATCTGGTCCTAA+AGG - Chr5:30195895-30195914 MsG0580026073.01.T01:intron 40.0%
! ATCACGGTGATGGTTAAGTT+GGG - Chr5:30197645-30197664 MsG0580026073.01.T01:exon 40.0%
! GCAGAAACCATTTTCTTCGA+CGG - Chr5:30195535-30195554 MsG0580026073.01.T01:intron 40.0%
! GGAGAAGAATTCTCAGGTTT+TGG - Chr5:30195876-30195895 MsG0580026073.01.T01:intron 40.0%
!! AAGATGTTCAGGTTGTTCCT+AGG - Chr5:30195743-30195762 MsG0580026073.01.T01:intron 40.0%
!! GGAGTTTTGTGGTGAGTTTA+CGG + Chr5:30195441-30195460 MsG0580026074.01.T01:CDS 40.0%
!! TAGGGTCTGAATTTTGGCAA+TGG - Chr5:30196994-30197013 MsG0580026073.01.T01:exon 40.0%
!!! TCTCAGGTTTTGGATCAATC+TGG - Chr5:30195886-30195905 MsG0580026073.01.T01:intron 40.0%
ATACAAGAGTGAAGCCGAGT+AGG + Chr5:30195594-30195613 MsG0580026074.01.T01:CDS 45.0%
CAACATCTTCCTTTGAGCCA+TGG - Chr5:30197484-30197503 MsG0580026073.01.T01:CDS 45.0%
CATCACGATCTCGATCACTA+CGG - Chr5:30197259-30197278 MsG0580026073.01.T01:CDS 45.0%
CCCCATTCACCAATAAACCT+AGG + Chr5:30195763-30195782 None:intergenic 45.0%
GGTCACAAGACCAAACATAC+AGG - Chr5:30196453-30196472 MsG0580026073.01.T01:intron 45.0%
GTACTTCATGATCACGGTGA+TGG - Chr5:30197635-30197654 MsG0580026073.01.T01:exon 45.0%
GTGCACTTTACCTACGTTAC+AGG - Chr5:30195644-30195663 MsG0580026073.01.T01:intron 45.0%
GTGCCTAAACCCTGTATGTT+TGG + Chr5:30196466-30196485 None:intergenic 45.0%
TACTCGGCTTCACTCTTGTA+TGG - Chr5:30195593-30195612 MsG0580026073.01.T01:intron 45.0%
TGTGGTGAGTTTACGGTTGT+GGG + Chr5:30195434-30195453 MsG0580026074.01.T01:CDS 45.0%
TTGTGGTGAGTTTACGGTTG+TGG + Chr5:30195435-30195454 MsG0580026074.01.T01:CDS 45.0%
! GAAACCATTTTCTTCGACGG+TGG - Chr5:30195538-30195557 MsG0580026073.01.T01:intron 45.0%
! GATCACGGTGATGGTTAAGT+TGG - Chr5:30197644-30197663 MsG0580026073.01.T01:exon 45.0%
! GTTTCTGCATTGGGCTTTTG+AGG + Chr5:30195523-30195542 MsG0580026074.01.T01:CDS 45.0%
! TATTTCAGGCTTAACGGGTG+AGG - Chr5:30195690-30195709 MsG0580026073.01.T01:intron 45.0%
! TCACGGTGATGGTTAAGTTG+GGG - Chr5:30197646-30197665 MsG0580026073.01.T01:exon 45.0%
!! GTTGTTGGTGGTGATAAGAG+AGG + Chr5:30195349-30195368 MsG0580026074.01.T01:CDS 45.0%
AGCTCCACCGTCGAAGAAAA+TGG + Chr5:30195545-30195564 MsG0580026074.01.T01:CDS 50.0%
CTCATCACCAACCTCCTACT+CGG - Chr5:30195577-30195596 MsG0580026073.01.T01:intron 50.0%
CTCTACAAAGGGGACAAGTG+TGG - Chr5:30197352-30197371 MsG0580026073.01.T01:CDS 50.0%
GTGGGTTTGATGAGGAAGAG+GGG + Chr5:30195406-30195425 MsG0580026074.01.T01:CDS 50.0%
GTGGTTGTGTGGATGTGGTA+GGG + Chr5:30195498-30195517 MsG0580026074.01.T01:CDS 50.0%
GTTTGATGAGGAAGAGGGGT+TGG + Chr5:30195402-30195421 MsG0580026074.01.T01:CDS 50.0%
TGAACACACCCATGGCTCAA+AGG + Chr5:30197496-30197515 None:intergenic 50.0%
TGGTTGTGTGGATGTGGTAG+GGG + Chr5:30195497-30195516 MsG0580026074.01.T01:CDS 50.0%
! AGGTGGGTTTGATGAGGAAG+AGG + Chr5:30195408-30195427 MsG0580026074.01.T01:CDS 50.0%
! GGATGAGACGTGGAGTTTTG+TGG + Chr5:30195452-30195471 MsG0580026074.01.T01:CDS 50.0%
! GGTGGGTTTGATGAGGAAGA+GGG + Chr5:30195407-30195426 MsG0580026074.01.T01:CDS 50.0%
! TGTGGGCTTGTTTGTTGGTG+AGG + Chr5:30195473-30195492 MsG0580026074.01.T01:CDS 50.0%
! TTGTTGGTGAGGATGAGACG+TGG + Chr5:30195462-30195481 MsG0580026074.01.T01:CDS 50.0%
!! CACGGTGATGGTTAAGTTGG+GGG - Chr5:30197647-30197666 MsG0580026073.01.T01:exon 50.0%
!! GGTTGGTGAACCTGTAACGT+AGG + Chr5:30195657-30195676 MsG0580026074.01.T01:CDS 50.0%
!! TCTGCATTGGGCTTTTGAGG+TGG + Chr5:30195520-30195539 MsG0580026074.01.T01:CDS 50.0%
!! TGGTTGATGGTGGTGGTTGT+TGG + Chr5:30195364-30195383 MsG0580026074.01.T01:CDS 50.0%
!! TTGATGGTGGTGGTTGTTGG+TGG + Chr5:30195361-30195380 MsG0580026074.01.T01:CDS 50.0%
!!! CTTTTGAGGTGGTGGTTGTG+TGG + Chr5:30195509-30195528 MsG0580026074.01.T01:CDS 50.0%
AGTGAAGCCGAGTAGGAGGT+TGG + Chr5:30195587-30195606 MsG0580026074.01.T01:CDS 55.0%
CAAGAGTGAAGCCGAGTAGG+AGG + Chr5:30195591-30195610 MsG0580026074.01.T01:CDS 55.0%
GAAAGGGCCATCACCGAGTT+TGG + Chr5:30197318-30197337 None:intergenic 55.0%
GAGTTTACGGTTGTGGGTGG+AGG + Chr5:30195428-30195447 MsG0580026074.01.T01:CDS 55.0%
GATGAGGAAGAGGGGTTGGA+GGG + Chr5:30195398-30195417 MsG0580026074.01.T01:CDS 55.0%
GGTGAGTTTACGGTTGTGGG+TGG + Chr5:30195431-30195450 MsG0580026074.01.T01:CDS 55.0%
GGTGGTTGTGTGGATGTGGT+AGG + Chr5:30195499-30195518 MsG0580026074.01.T01:CDS 55.0%
GGTGTGGTTGTGGTGGTTGA+TGG + Chr5:30195377-30195396 MsG0580026074.01.T01:CDS 55.0%
GTGGATGTGGTAGGGGTTGT+GGG + Chr5:30195490-30195509 MsG0580026074.01.T01:CDS 55.0%
TGATGAGGAAGAGGGGTTGG+AGG + Chr5:30195399-30195418 MsG0580026074.01.T01:CDS 55.0%
TGTGGATGTGGTAGGGGTTG+TGG + Chr5:30195491-30195510 MsG0580026074.01.T01:CDS 55.0%
TTACGGTTGTGGGTGGAGGT+GGG + Chr5:30195424-30195443 MsG0580026074.01.T01:CDS 55.0%
TTCGACGGTGGAGCTCACTA+CGG - Chr5:30195550-30195569 MsG0580026073.01.T01:intron 55.0%
TTTACGGTTGTGGGTGGAGG+TGG + Chr5:30195425-30195444 MsG0580026074.01.T01:CDS 55.0%
! AACTCGGTGATGGCCCTTTC+TGG - Chr5:30197318-30197337 MsG0580026073.01.T01:CDS 55.0%
! AGGTGGTGGTTGTGTGGATG+TGG + Chr5:30195503-30195522 MsG0580026074.01.T01:CDS 55.0%
! GGGGTTGTGGGCTTGTTTGT+TGG + Chr5:30195478-30195497 MsG0580026074.01.T01:CDS 55.0%
! GTCAGCTCCAAACTCGGTGA+TGG - Chr5:30197308-30197327 MsG0580026073.01.T01:CDS 55.0%
!! CGAGTAGGAGGTTGGTGATG+AGG + Chr5:30195579-30195598 MsG0580026074.01.T01:CDS 55.0%
!! GTGGTTGTGGTGGTTGATGG+TGG + Chr5:30195374-30195393 MsG0580026074.01.T01:CDS 55.0%
!! GTTGTGGTGGTTGATGGTGG+TGG + Chr5:30195371-30195390 MsG0580026074.01.T01:CDS 55.0%
!!! GCATTGGGCTTTTGAGGTGG+TGG + Chr5:30195517-30195536 MsG0580026074.01.T01:CDS 55.0%
! GGGTGGAGGTGGGTTTGATG+AGG + Chr5:30195414-30195433 MsG0580026074.01.T01:CDS 60.0%
! GTTGGAGGGTGTGGTTGTGG+TGG + Chr5:30195384-30195403 MsG0580026074.01.T01:CDS 60.0%
GGAAGAGGGGTTGGAGGGTG+TGG + Chr5:30195393-30195412 MsG0580026074.01.T01:CDS 65.0%
! GGGGTTGGAGGGTGTGGTTG+TGG + Chr5:30195387-30195406 MsG0580026074.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 30195226 30197703 30195226 ID=MsG0580026073.01;
Chr5 mRNA 30195226 30197703 30195226 ID=MsG0580026073.01.T01;Parent=MsG0580026073.01
Chr5 exon 30195226 30195461 30195226 ID=MsG0580026073.01.T01.exon;Parent=MsG0580026073.01.T01
Chr5 exon 30196986 30197703 30196986 ID=MsG0580026073.01.T01.exon;Parent=MsG0580026073.01.T01
Chr5 CDS 30197005 30197601 30197005 ID=MsG0580026073.01.T01.cds;Parent=MsG0580026073.01.T01
Gene Sequence

>MsG0580026073.01.T01

ATGGCTTGCAATTCTACACCTCTCTTATCACCACCAACAACCACCACCATCAACCACCACAACCACACCCTCCAACCCCTCTTCCTCATCAAACCCACCTCCACCCACAACCGTAAACTCACCACAAAACTCCACGTCTCATCCTCACCAACAAACAAGCCCACAACCCCTACCACATCCACACAACCACCACCTCAAAAGCCCAATGCAGAAACCATTTTCTTCGACGGTGGAGCTCACTACGGAGACCTCATCACCAACCTCCTACTCGGCTTCACTCTTGTATGGCTTCCCTTAACACTAGCAGCAGTTTCACGTGCACTTTACCTACGTTACAGGTTCACCAACCTAAGAGTGAGTGTTATTTCAGGCTTAACGGGTGAGGATAGAAGTGACTTTTCATATAGTGTTATCAAAGATGTTCAGGTTGTTCCTAGGTTTATTGGTGAATGGGGTGATATTGTTATTACATTAAAAGATGGTACAAAGGTTGATCTTAGGAGTGTTCCTAAGTTTAGAGAAATTGCTAAGTATTGTTTGTCTATGAAGGAGAAGAATTCTCAGGTTTTGGATCAATCTGGTCCTAAAGGCTTTTGA

Protein sequence

>MsG0580026073.01.T01

MACNSTPLLSPPTTTTINHHNHTLQPLFLIKPTSTHNRKLTTKLHVSSSPTNKPTTPTTSTQPPPQKPNAETIFFDGGAHYGDLITNLLLGFTLVWLPLTLAAVSRALYLRYRFTNLRVSVISGLTGEDRSDFSYSVIKDVQVVPRFIGEWGDIVITLKDGTKVDLRSVPKFREIAKYCLSMKEKNSQVLDQSGPKGF*