AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017773.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017773.01.T01 MTR_3g111840 99.420 345 2 0 1 345 1 345 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017773.01.T01 AT5G42760 66.565 329 103 2 9 333 17 342 7.25e-164 461
MsG0380017773.01.T01 AT5G42760 65.432 324 105 2 9 328 13 333 6.68e-158 447

Find 100 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCCAATCACTGTAAAAT+TGG 0.235892 3:-100525570 None:intergenic
ATATCGTTTGAGTTGCTTAA+AGG 0.250789 3:+100525195 MsG0380017773.01.T01:CDS
TGATCCACTTGCTGCTTTGC+TGG 0.277427 3:+100524424 MsG0380017773.01.T01:CDS
CATGTAAAACTTTCACAAAT+TGG 0.278833 3:+100525622 MsG0380017773.01.T01:CDS
AGCTTGTTGAAGAGATTTAA+TGG 0.282957 3:-100525679 None:intergenic
TGCCACTCTGGTTAAGGATT+TGG 0.289529 3:-100525326 None:intergenic
ATCATGTCTGATCAAGTAAA+TGG 0.290117 3:+100524239 MsG0380017773.01.T01:exon
TTGTACTTGGTGGAAGCTTC+TGG 0.291125 3:+100525760 MsG0380017773.01.T01:CDS
ATTGTGTGTTACACAAAATA+AGG 0.292177 3:-100524218 None:intergenic
CCTGTGCTTCTCTGCCATTC+GGG 0.295298 3:-100524583 None:intergenic
TCAAAGTTCTGCGCATAATA+AGG 0.306682 3:+100525792 MsG0380017773.01.T01:CDS
CCACTTGCTGCTTTGCTGGC+AGG 0.313162 3:+100524428 MsG0380017773.01.T01:CDS
GTAAAATTGGAATACTGAAT+TGG 0.351492 3:-100525557 None:intergenic
ATGGAAAAGCTTCAAATTGC+AGG 0.352932 3:+100525373 MsG0380017773.01.T01:CDS
GGAGACCCAGATGCCCATTT+CGG 0.353041 3:+100525643 MsG0380017773.01.T01:CDS
GTCAGCTGCCACTCTGGTTA+AGG 0.354833 3:-100525332 None:intergenic
CAGTTGCATGGCGTTGGATT+GGG 0.355782 3:-100525452 None:intergenic
GCAGTTGCATGGCGTTGGAT+TGG 0.356550 3:-100525453 None:intergenic
ACCTGTGCTTCTCTGCCATT+CGG 0.360737 3:-100524584 None:intergenic
CAGCATGGTGTTCCGTCATC+TGG 0.362251 3:-100525733 None:intergenic
CACTTGCTGCTTTGCTGGCA+GGG 0.366484 3:+100524429 MsG0380017773.01.T01:CDS
AACAATGCTCGTGAAACTTC+TGG 0.370805 3:+100524500 MsG0380017773.01.T01:CDS
TGACTTTGCAGAAGTCTTAG+AGG 0.381682 3:+100525237 MsG0380017773.01.T01:CDS
CATGTTCTATTCTACGAATC+AGG 0.382111 3:-100525830 None:intergenic
AAGAGGCCGAAATGGGCATC+TGG 0.390257 3:-100525649 None:intergenic
GTTGCGTGGACCTGTCGAAC+AGG 0.390970 3:-100524320 None:intergenic
TCTGGTTAAGGATTTGGCTT+TGG 0.395848 3:-100525320 None:intergenic
ACATGTGTGAAGCCAATAGA+TGG 0.399797 3:-100525604 None:intergenic
TTTGGCAAGCTGACCTTTGA+AGG 0.402317 3:-100524364 None:intergenic
GATCATTCAAGAGGCCGAAA+TGG 0.408961 3:-100525657 None:intergenic
CTGTACAATTGCTACACTAT+TGG 0.408983 3:+100525908 MsG0380017773.01.T01:three_prime_UTR
TTGTGTGTTACACAAAATAA+GGG 0.419061 3:-100524217 None:intergenic
CACTATTCTGCAAGCAGCTA+AGG 0.423193 3:+100525267 MsG0380017773.01.T01:CDS
CAGGTTGTTCTCCTAGGTGC+AGG 0.437261 3:+100524602 MsG0380017773.01.T01:CDS
ACTTGCTGCTTTGCTGGCAG+GGG 0.441240 3:+100524430 MsG0380017773.01.T01:CDS
TCTTATGTCAGCTGCCACTC+TGG 0.442727 3:-100525338 None:intergenic
CTGACATAAGAGAAAATGAT+TGG 0.443102 3:+100525350 MsG0380017773.01.T01:CDS
GGTTTAGCTCTGGCCATGCT+TGG 0.443811 3:-100524274 None:intergenic
AAAGGACAGCGATGTCTTTG+AGG 0.446558 3:+100525213 MsG0380017773.01.T01:CDS
GGGTCAGTATGTAACAAGTC+TGG 0.458829 3:-100524299 None:intergenic
TAGCCCTTCCTGCAGCCGTT+TGG 0.463381 3:-100524382 None:intergenic
TCTCAGCAGTTGCATGGCGT+TGG 0.466299 3:-100525458 None:intergenic
TCCTTGCAGTTAGAACGCTT+TGG 0.467503 3:+100524528 MsG0380017773.01.T01:CDS
CGCAACAATTGAAAAGGAAT+GGG 0.471274 3:+100524337 MsG0380017773.01.T01:CDS
ACCATGCTGTCGCTTGTACT+TGG 0.472145 3:+100525747 MsG0380017773.01.T01:CDS
ATCATTCAAGAGGCCGAAAT+GGG 0.474174 3:-100525656 None:intergenic
ATAATAAGGAGTCGGTCATT+CGG 0.478792 3:+100525806 MsG0380017773.01.T01:CDS
CTTGCCAAACGGCTGCAGGA+AGG 0.480463 3:+100524378 MsG0380017773.01.T01:CDS
TTGCCAAACGGCTGCAGGAA+GGG 0.481862 3:+100524379 MsG0380017773.01.T01:CDS
TACCACAGAAGAGCACGGTC+TGG 0.483659 3:+100525401 MsG0380017773.01.T01:CDS
AGCACGGTCTGGATTCTAGA+AGG 0.484304 3:+100525412 MsG0380017773.01.T01:CDS
GAAGCACAGGTTGTTCTCCT+AGG 0.487419 3:+100524596 MsG0380017773.01.T01:CDS
TCAGCTTGCCAAACGGCTGC+AGG 0.487788 3:+100524374 MsG0380017773.01.T01:CDS
TGGTGTTCCGTCATCTGGAT+TGG 0.488532 3:-100525728 None:intergenic
ATAGATGGTAAAAGTTGGTC+TGG 0.488683 3:-100525589 None:intergenic
ACGCAACAATTGAAAAGGAA+TGG 0.493384 3:+100524336 MsG0380017773.01.T01:CDS
TGGATTGGGCGAGGTAGTAT+AGG 0.496759 3:-100525438 None:intergenic
ACATACTGACCCTGTTCGAC+AGG 0.504111 3:+100524310 MsG0380017773.01.T01:CDS
TTATGCGCAGAACTTTGATC+GGG 0.506535 3:-100525787 None:intergenic
GCAAAGCAGCAAGTGGATCA+TGG 0.508155 3:-100524421 None:intergenic
CCCGAATGGCAGAGAAGCAC+AGG 0.509784 3:+100524583 MsG0380017773.01.T01:CDS
CATAAGAGAAAATGATTGGA+TGG 0.512586 3:+100525354 MsG0380017773.01.T01:CDS
AAATAAGGTTCGAATAACTT+AGG 0.515854 3:-100526003 None:intergenic
GGTCCACGCAACAATTGAAA+AGG 0.522870 3:+100524331 MsG0380017773.01.T01:CDS
ATTATGCGCAGAACTTTGAT+CGG 0.524410 3:-100525788 None:intergenic
GCTTTGGTTTGATTCTAGAC+TGG 0.526315 3:+100524544 MsG0380017773.01.T01:CDS
ATGCTGTCGCTTGTACTTGG+TGG 0.529839 3:+100525750 MsG0380017773.01.T01:CDS
ACAAGCTCCGCAACTTGCCT+AGG 0.536607 3:+100525695 MsG0380017773.01.T01:CDS
GTTCGAATAACTTAGGTCAA+AGG 0.544773 3:-100525996 None:intergenic
CGGCTGCAGGAAGGGCTATG+TGG 0.545627 3:+100524387 MsG0380017773.01.T01:CDS
CAATAGTGTAGCAATTGTAC+AGG 0.548574 3:-100525907 None:intergenic
GCATGGCGTTGGATTGGGCG+AGG 0.548828 3:-100525447 None:intergenic
ACTTATTCATGAAGTCTGCT+AGG 0.551456 3:-100525519 None:intergenic
AAGTCTGGAAGGTTTAGCTC+TGG 0.555279 3:-100524284 None:intergenic
AGAGGCCGAAATGGGCATCT+GGG 0.562365 3:-100525648 None:intergenic
ATTGTACAGGTGACAACACA+TGG 0.564480 3:-100525894 None:intergenic
AGGAATGGGATTTCCTTCAA+AGG 0.566300 3:+100524351 MsG0380017773.01.T01:CDS
AGCCAATAGATGGTAAAAGT+TGG 0.570838 3:-100525594 None:intergenic
CCTGCCAGCAAAGCAGCAAG+TGG 0.579542 3:-100524428 None:intergenic
ACCAAAGCGTTCTAACTGCA+AGG 0.581770 3:-100524529 None:intergenic
ATCCAGACCGTGCTCTTCTG+TGG 0.590430 3:-100525403 None:intergenic
GCTTGCAAGACAACCAAGCA+TGG 0.591039 3:+100524261 MsG0380017773.01.T01:CDS
TAAAATTCTCAGCAGTTGCA+TGG 0.596944 3:-100525464 None:intergenic
GGATTGGTTTGTAATGACCT+AGG 0.599942 3:-100525712 None:intergenic
CTGATTCGTAGAATAGAACA+TGG 0.603568 3:+100525831 MsG0380017773.01.T01:exon
TCAAAGGTCAGCTTGCCAAA+CGG 0.612550 3:+100524367 MsG0380017773.01.T01:CDS
ACCAAGTACAAGCGACAGCA+TGG 0.615849 3:-100525748 None:intergenic
GTAATGACCTAGGCAAGTTG+CGG 0.618313 3:-100525702 None:intergenic
GATTTAATGGATCATTCAAG+AGG 0.619216 3:-100525666 None:intergenic
CAGTATGTAACAAGTCTGGA+AGG 0.620530 3:-100524295 None:intergenic
GATGTTCTCAGTTCCCCGAA+TGG 0.621167 3:+100524569 MsG0380017773.01.T01:CDS
CTGTGCTTCTCTGCCATTCG+GGG 0.625733 3:-100524582 None:intergenic
TTCTGCGCATAATAAGGAGT+CGG 0.630759 3:+100525798 MsG0380017773.01.T01:CDS
CAATTGTGTCTTAACTCACA+CGG 0.633180 3:+100525492 MsG0380017773.01.T01:CDS
TTACAAACCAATCCAGATGA+CGG 0.634102 3:+100525721 MsG0380017773.01.T01:CDS
TTGCGTGGACCTGTCGAACA+GGG 0.640836 3:-100524319 None:intergenic
TTTCTTACCACAGAAGAGCA+CGG 0.661986 3:+100525396 MsG0380017773.01.T01:CDS
AGCCAAATCCTTAACCAGAG+TGG 0.662283 3:+100525324 MsG0380017773.01.T01:CDS
GTGTCTACAAACCTGCACCT+AGG 0.662807 3:-100524613 None:intergenic
GAATACTGAATTGGATAGCG+TGG 0.687583 3:-100525548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTAATTCTTATTGT+TGG + Chr3:100525870-100525889 MsG0380017773.01.T01:three_prime_UTR 10.0%
!! AAAAGATATCTTGTCTTAAA+AGG - Chr3:100524873-100524892 None:intergenic 20.0%
!! ATTCTATTCCTAGTTAATTT+GGG + Chr3:100524908-100524927 MsG0380017773.01.T01:intron 20.0%
!! TATTCTATTCCTAGTTAATT+TGG + Chr3:100524907-100524926 MsG0380017773.01.T01:intron 20.0%
!!! GTCTTAAAAGGTTTTAAATA+TGG - Chr3:100524861-100524880 None:intergenic 20.0%
! ATTGTGTGTTACACAAAATA+AGG - Chr3:100524221-100524240 None:intergenic 25.0%
! CATGTAAAACTTTCACAAAT+TGG + Chr3:100525622-100525641 MsG0380017773.01.T01:CDS 25.0%
! GTAAAATTGGAATACTGAAT+TGG - Chr3:100525560-100525579 None:intergenic 25.0%
! TTGTGTGTTACACAAAATAA+GGG - Chr3:100524220-100524239 None:intergenic 25.0%
!! TAATTTGGGATGCAAATATT+TGG + Chr3:100524922-100524941 MsG0380017773.01.T01:intron 25.0%
!! TATTCCAATTTTACAGTGAT+TGG + Chr3:100525566-100525585 MsG0380017773.01.T01:CDS 25.0%
!!! ATAGTCTTTTTCAATACAAG+AGG + Chr3:100525954-100525973 MsG0380017773.01.T01:three_prime_UTR 25.0%
!!! TAGTCTTTTTCAATACAAGA+GGG + Chr3:100525955-100525974 MsG0380017773.01.T01:three_prime_UTR 25.0%
ACAATTTAGTCGTGTCTAAA+AGG - Chr3:100524956-100524975 None:intergenic 30.0%
ATCATGTCTGATCAAGTAAA+TGG + Chr3:100524239-100524258 MsG0380017773.01.T01:exon 30.0%
ATTCTTGCAAAATTTGATGC+AGG + Chr3:100525157-100525176 MsG0380017773.01.T01:intron 30.0%
ATTTGCATCCCAAATTAACT+AGG - Chr3:100524919-100524938 None:intergenic 30.0%
CATAAGAGAAAATGATTGGA+TGG + Chr3:100525354-100525373 MsG0380017773.01.T01:CDS 30.0%
CTGACATAAGAGAAAATGAT+TGG + Chr3:100525350-100525369 MsG0380017773.01.T01:CDS 30.0%
GATGCAAATATTTGGCAAAA+TGG + Chr3:100524930-100524949 MsG0380017773.01.T01:intron 30.0%
TAATGATTGTTTGGGAACTT+AGG - Chr3:100525003-100525022 None:intergenic 30.0%
TATTGGCAAAAAATGCTAGA+CGG + Chr3:100525925-100525944 MsG0380017773.01.T01:three_prime_UTR 30.0%
TGTTACACAAAATAAGGGAT+TGG - Chr3:100524215-100524234 None:intergenic 30.0%
! ACCAGAAAATTGAAGACTTT+TGG + Chr3:100524791-100524810 MsG0380017773.01.T01:intron 30.0%
! AGAAAATTGAAGACTTTTGG+GGG + Chr3:100524794-100524813 MsG0380017773.01.T01:intron 30.0%
! ATCATTAGACAGGACAATTT+TGG + Chr3:100525016-100525035 MsG0380017773.01.T01:intron 30.0%
! CAGAAAATTGAAGACTTTTG+GGG + Chr3:100524793-100524812 MsG0380017773.01.T01:intron 30.0%
! CCAGAAAATTGAAGACTTTT+GGG + Chr3:100524792-100524811 MsG0380017773.01.T01:intron 30.0%
! CTTTTCTCATCTTTTCATGA+AGG - Chr3:100524472-100524491 None:intergenic 30.0%
! GATTTAATGGATCATTCAAG+AGG - Chr3:100525669-100525688 None:intergenic 30.0%
!! AGCTTGTTGAAGAGATTTAA+TGG - Chr3:100525682-100525701 None:intergenic 30.0%
!! AGTTTCTTGTGTGTTTTTGA+AGG - Chr3:100524829-100524848 None:intergenic 30.0%
!! ATATCGTTTGAGTTGCTTAA+AGG + Chr3:100525195-100525214 MsG0380017773.01.T01:CDS 30.0%
!!! AAAGGCTATTTCTAGCTTTT+TGG - Chr3:100525981-100526000 None:intergenic 30.0%
ACGCAACAATTGAAAAGGAA+TGG + Chr3:100524336-100524355 MsG0380017773.01.T01:CDS 35.0%
ACTTATTCATGAAGTCTGCT+AGG - Chr3:100525522-100525541 None:intergenic 35.0%
AGCCAATAGATGGTAAAAGT+TGG - Chr3:100525597-100525616 None:intergenic 35.0%
ATAATAAGGAGTCGGTCATT+CGG + Chr3:100525806-100525825 MsG0380017773.01.T01:CDS 35.0%
ATGGAAAAGCTTCAAATTGC+AGG + Chr3:100525373-100525392 MsG0380017773.01.T01:CDS 35.0%
ATTATGCGCAGAACTTTGAT+CGG - Chr3:100525791-100525810 None:intergenic 35.0%
ATTGGCAAAAAATGCTAGAC+GGG + Chr3:100525926-100525945 MsG0380017773.01.T01:three_prime_UTR 35.0%
CAATAGTGTAGCAATTGTAC+AGG - Chr3:100525910-100525929 None:intergenic 35.0%
CAATTGTGTCTTAACTCACA+CGG + Chr3:100525492-100525511 MsG0380017773.01.T01:CDS 35.0%
CATGTTCTATTCTACGAATC+AGG - Chr3:100525833-100525852 None:intergenic 35.0%
CGCAACAATTGAAAAGGAAT+GGG + Chr3:100524337-100524356 MsG0380017773.01.T01:CDS 35.0%
CTGTACAATTGCTACACTAT+TGG + Chr3:100525908-100525927 MsG0380017773.01.T01:three_prime_UTR 35.0%
GTCCTGTCTAATGATTGTTT+GGG - Chr3:100525011-100525030 None:intergenic 35.0%
GTTCGAATAACTTAGGTCAA+AGG - Chr3:100525999-100526018 None:intergenic 35.0%
TAAAATTCTCAGCAGTTGCA+TGG - Chr3:100525467-100525486 None:intergenic 35.0%
TCAAAGTTCTGCGCATAATA+AGG + Chr3:100525792-100525811 MsG0380017773.01.T01:CDS 35.0%
TGCAAAATTTGATGCAGGAA+TGG + Chr3:100525162-100525181 MsG0380017773.01.T01:intron 35.0%
TGTCCTGTCTAATGATTGTT+TGG - Chr3:100525012-100525031 None:intergenic 35.0%
TTACAAACCAATCCAGATGA+CGG + Chr3:100525721-100525740 MsG0380017773.01.T01:CDS 35.0%
TTCCCAAACAATCATTAGAC+AGG + Chr3:100525006-100525025 MsG0380017773.01.T01:intron 35.0%
! ATAGATGGTAAAAGTTGGTC+TGG - Chr3:100525592-100525611 None:intergenic 35.0%
! ATTCCTTTTCAATTGTTGCG+TGG - Chr3:100524337-100524356 None:intergenic 35.0%
! CAATGATTATGATTAGCTGC+TGG - Chr3:100525068-100525087 None:intergenic 35.0%
! CCCAAAAGTCTTCAATTTTC+TGG - Chr3:100524795-100524814 None:intergenic 35.0%
! CTGATTCGTAGAATAGAACA+TGG + Chr3:100525831-100525850 MsG0380017773.01.T01:exon 35.0%
! GACCAACTTTTACCATCTAT+TGG + Chr3:100525592-100525611 MsG0380017773.01.T01:CDS 35.0%
! TGTAACAGCACATTTTAGAC+AGG + Chr3:100524973-100524992 MsG0380017773.01.T01:intron 35.0%
!!! AGGACAATTTTGGAACCTTT+TGG + Chr3:100525026-100525045 MsG0380017773.01.T01:intron 35.0%
AACAATGCTCGTGAAACTTC+TGG + Chr3:100524500-100524519 MsG0380017773.01.T01:CDS 40.0%
ACATGTGTGAAGCCAATAGA+TGG - Chr3:100525607-100525626 None:intergenic 40.0%
AGGAATGGGATTTCCTTCAA+AGG + Chr3:100524351-100524370 MsG0380017773.01.T01:CDS 40.0%
ATAGTTATCAGAAGCCAACG+CGG + Chr3:100524737-100524756 MsG0380017773.01.T01:intron 40.0%
ATCATTCAAGAGGCCGAAAT+GGG - Chr3:100525659-100525678 None:intergenic 40.0%
ATTGTACAGGTGACAACACA+TGG - Chr3:100525897-100525916 None:intergenic 40.0%
CAGTATGTAACAAGTCTGGA+AGG - Chr3:100524298-100524317 None:intergenic 40.0%
CTGGCCAATCACTGTAAAAT+TGG - Chr3:100525573-100525592 None:intergenic 40.0%
GAATACTGAATTGGATAGCG+TGG - Chr3:100525551-100525570 None:intergenic 40.0%
TGACTTTGCAGAAGTCTTAG+AGG + Chr3:100525237-100525256 MsG0380017773.01.T01:CDS 40.0%
TTATGCGCAGAACTTTGATC+GGG - Chr3:100525790-100525809 None:intergenic 40.0%
TTCTGCGCATAATAAGGAGT+CGG + Chr3:100525798-100525817 MsG0380017773.01.T01:CDS 40.0%
TTGGCAAAAAATGCTAGACG+GGG + Chr3:100525927-100525946 MsG0380017773.01.T01:three_prime_UTR 40.0%
TTTCTTACCACAGAAGAGCA+CGG + Chr3:100525396-100525415 MsG0380017773.01.T01:CDS 40.0%
! TCTGGTTAAGGATTTGGCTT+TGG - Chr3:100525323-100525342 None:intergenic 40.0%
!! GCTTTGGTTTGATTCTAGAC+TGG + Chr3:100524544-100524563 MsG0380017773.01.T01:CDS 40.0%
!! GGATTGGTTTGTAATGACCT+AGG - Chr3:100525715-100525734 None:intergenic 40.0%
!!! TCTGGTCTACTGCTGTTTTT+GGG - Chr3:100524777-100524796 None:intergenic 40.0%
!!! TTCTGGTCTACTGCTGTTTT+TGG - Chr3:100524778-100524797 None:intergenic 40.0%
AAAGGACAGCGATGTCTTTG+AGG + Chr3:100525213-100525232 MsG0380017773.01.T01:CDS 45.0%
AGCCAAATCCTTAACCAGAG+TGG + Chr3:100525324-100525343 MsG0380017773.01.T01:CDS 45.0%
CACTATTCTGCAAGCAGCTA+AGG + Chr3:100525267-100525286 MsG0380017773.01.T01:CDS 45.0%
GATCATTCAAGAGGCCGAAA+TGG - Chr3:100525660-100525679 None:intergenic 45.0%
GGGTCAGTATGTAACAAGTC+TGG - Chr3:100524302-100524321 None:intergenic 45.0%
GGTCCACGCAACAATTGAAA+AGG + Chr3:100524331-100524350 MsG0380017773.01.T01:CDS 45.0%
GTAATGACCTAGGCAAGTTG+CGG - Chr3:100525705-100525724 None:intergenic 45.0%
TCAAAGGTCAGCTTGCCAAA+CGG + Chr3:100524367-100524386 MsG0380017773.01.T01:CDS 45.0%
TCCTTGCAGTTAGAACGCTT+TGG + Chr3:100524528-100524547 MsG0380017773.01.T01:CDS 45.0%
TGCCACTCTGGTTAAGGATT+TGG - Chr3:100525329-100525348 None:intergenic 45.0%
TTTGGCAAGCTGACCTTTGA+AGG - Chr3:100524367-100524386 None:intergenic 45.0%
! AAGTCTGGAAGGTTTAGCTC+TGG - Chr3:100524287-100524306 None:intergenic 45.0%
! ACCAAAGCGTTCTAACTGCA+AGG - Chr3:100524532-100524551 None:intergenic 45.0%
! CAGACTGGCTGTAATCCAAA+AGG - Chr3:100525044-100525063 None:intergenic 45.0%
! TTGTACTTGGTGGAAGCTTC+TGG + Chr3:100525760-100525779 MsG0380017773.01.T01:CDS 45.0%
ACATACTGACCCTGTTCGAC+AGG + Chr3:100524310-100524329 MsG0380017773.01.T01:CDS 50.0%
ACCAAGTACAAGCGACAGCA+TGG - Chr3:100525751-100525770 None:intergenic 50.0%
ACCTGTGCTTCTCTGCCATT+CGG - Chr3:100524587-100524606 None:intergenic 50.0%
AGAACAGAATCCATCCGCGT+TGG - Chr3:100524754-100524773 None:intergenic 50.0%
AGCACGGTCTGGATTCTAGA+AGG + Chr3:100525412-100525431 MsG0380017773.01.T01:CDS 50.0%
GAAGCACAGGTTGTTCTCCT+AGG + Chr3:100524596-100524615 MsG0380017773.01.T01:CDS 50.0%
GATGTTCTCAGTTCCCCGAA+TGG + Chr3:100524569-100524588 MsG0380017773.01.T01:CDS 50.0%
GCAAAGCAGCAAGTGGATCA+TGG - Chr3:100524424-100524443 None:intergenic 50.0%
GCTTGCAAGACAACCAAGCA+TGG + Chr3:100524261-100524280 MsG0380017773.01.T01:CDS 50.0%
GTGTCTACAAACCTGCACCT+AGG - Chr3:100524616-100524635 None:intergenic 50.0%
TCTTATGTCAGCTGCCACTC+TGG - Chr3:100525341-100525360 None:intergenic 50.0%
TGGTGTTCCGTCATCTGGAT+TGG - Chr3:100525731-100525750 None:intergenic 50.0%
TTATCAGAAGCCAACGCGGA+TGG + Chr3:100524741-100524760 MsG0380017773.01.T01:intron 50.0%
! ACCATGCTGTCGCTTGTACT+TGG + Chr3:100525747-100525766 MsG0380017773.01.T01:CDS 50.0%
! ATGCTGTCGCTTGTACTTGG+TGG + Chr3:100525750-100525769 MsG0380017773.01.T01:CDS 50.0%
! CAGTTGCATGGCGTTGGATT+GGG - Chr3:100525455-100525474 None:intergenic 50.0%
! TGATTAGCTGCTGGTCAGAC+TGG - Chr3:100525059-100525078 None:intergenic 50.0%
! TGGATTGGGCGAGGTAGTAT+AGG - Chr3:100525441-100525460 None:intergenic 50.0%
!! TGATCCACTTGCTGCTTTGC+TGG + Chr3:100524424-100524443 MsG0380017773.01.T01:CDS 50.0%
AAGAGGCCGAAATGGGCATC+TGG - Chr3:100525652-100525671 None:intergenic 55.0%
ACAAGCTCCGCAACTTGCCT+AGG + Chr3:100525695-100525714 MsG0380017773.01.T01:CDS 55.0%
AGAGGCCGAAATGGGCATCT+GGG - Chr3:100525651-100525670 None:intergenic 55.0%
ATCCAGACCGTGCTCTTCTG+TGG - Chr3:100525406-100525425 None:intergenic 55.0%
CAGCATGGTGTTCCGTCATC+TGG - Chr3:100525736-100525755 None:intergenic 55.0%
CAGGTTGTTCTCCTAGGTGC+AGG + Chr3:100524602-100524621 MsG0380017773.01.T01:CDS 55.0%
CCTGTGCTTCTCTGCCATTC+GGG - Chr3:100524586-100524605 None:intergenic 55.0%
CTGTGCTTCTCTGCCATTCG+GGG - Chr3:100524585-100524604 None:intergenic 55.0%
GGAGACCCAGATGCCCATTT+CGG + Chr3:100525643-100525662 MsG0380017773.01.T01:CDS 55.0%
GTCAGCTGCCACTCTGGTTA+AGG - Chr3:100525335-100525354 None:intergenic 55.0%
TCTCAGCAGTTGCATGGCGT+TGG - Chr3:100525461-100525480 None:intergenic 55.0%
TTGCCAAACGGCTGCAGGAA+GGG + Chr3:100524379-100524398 MsG0380017773.01.T01:CDS 55.0%
TTGCGTGGACCTGTCGAACA+GGG - Chr3:100524322-100524341 None:intergenic 55.0%
! GCAGTTGCATGGCGTTGGAT+TGG - Chr3:100525456-100525475 None:intergenic 55.0%
! TACCACAGAAGAGCACGGTC+TGG + Chr3:100525401-100525420 MsG0380017773.01.T01:CDS 55.0%
!! ACTTGCTGCTTTGCTGGCAG+GGG + Chr3:100524430-100524449 MsG0380017773.01.T01:CDS 55.0%
!! CACTTGCTGCTTTGCTGGCA+GGG + Chr3:100524429-100524448 MsG0380017773.01.T01:CDS 55.0%
!! GGTTTAGCTCTGGCCATGCT+TGG - Chr3:100524277-100524296 None:intergenic 55.0%
CCTGCCAGCAAAGCAGCAAG+TGG - Chr3:100524431-100524450 None:intergenic 60.0%
CTTGCCAAACGGCTGCAGGA+AGG + Chr3:100524378-100524397 MsG0380017773.01.T01:CDS 60.0%
GTTGCGTGGACCTGTCGAAC+AGG - Chr3:100524323-100524342 None:intergenic 60.0%
TAGCCCTTCCTGCAGCCGTT+TGG - Chr3:100524385-100524404 None:intergenic 60.0%
TCAGCTTGCCAAACGGCTGC+AGG + Chr3:100524374-100524393 MsG0380017773.01.T01:CDS 60.0%
! CCCGAATGGCAGAGAAGCAC+AGG + Chr3:100524583-100524602 MsG0380017773.01.T01:CDS 60.0%
!! CCACTTGCTGCTTTGCTGGC+AGG + Chr3:100524428-100524447 MsG0380017773.01.T01:CDS 60.0%
CGGCTGCAGGAAGGGCTATG+TGG + Chr3:100524387-100524406 MsG0380017773.01.T01:CDS 65.0%
! GCATGGCGTTGGATTGGGCG+AGG - Chr3:100525450-100525469 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100524214 100526019 100524214 ID=MsG0380017773.01;Name=MsG0380017773.01
Chr3 mRNA 100524214 100526019 100524214 ID=MsG0380017773.01.T01;Parent=MsG0380017773.01;Name=MsG0380017773.01.T01;_AED=0.36;_eAED=0.36;_QI=28|1|1|1|1|1|2|185|345
Chr3 exon 100524214 100524623 100524214 ID=MsG0380017773.01.T01:exon:2782;Parent=MsG0380017773.01.T01
Chr3 exon 100525179 100526019 100525179 ID=MsG0380017773.01.T01:exon:2783;Parent=MsG0380017773.01.T01
Chr3 five_prime_UTR 100524214 100524241 100524214 ID=MsG0380017773.01.T01:five_prime_utr;Parent=MsG0380017773.01.T01
Chr3 CDS 100524242 100524623 100524242 ID=MsG0380017773.01.T01:cds;Parent=MsG0380017773.01.T01
Chr3 CDS 100525179 100525834 100525179 ID=MsG0380017773.01.T01:cds;Parent=MsG0380017773.01.T01
Chr3 three_prime_UTR 100525835 100526019 100525835 ID=MsG0380017773.01.T01:three_prime_utr;Parent=MsG0380017773.01.T01
Gene Sequence

>MsG0380017773.01.T01

ATGTCTGATCAAGTAAATGGCTTGCAAGACAACCAAGCATGGCCAGAGCTAAACCTTCCAGACTTGTTACATACTGACCCTGTTCGACAGGTCCACGCAACAATTGAAAAGGAATGGGATTTCCTTCAAAGGTCAGCTTGCCAAACGGCTGCAGGAAGGGCTATGTGGAAGCATGTGATCCATGATCCACTTGCTGCTTTGCTGGCAGGGGAGACTTATTTGAGAAACCTTCATGAAAAGATGAGAAAAGACTATCTCAACAATGCTCGTGAAACTTCTGGAGTGATCCTTGCAGTTAGAACGCTTTGGTTTGATTCTAGACTGGAAGATGTTCTCAGTTCCCCGAATGGCAGAGAAGCACAGGTTGTTCTCCTAGGTGCAGGAATGGATACAAGAGCATATCGTTTGAGTTGCTTAAAGGACAGCGATGTCTTTGAGGTTGACTTTGCAGAAGTCTTAGAGGTAAAAAGCACTATTCTGCAAGCAGCTAAGGAATCAACATACGAGTCACAACATATTATGTCCAAAGCCAAATCCTTAACCAGAGTGGCAGCTGACATAAGAGAAAATGATTGGATGGAAAAGCTTCAAATTGCAGGTTTCTTACCACAGAAGAGCACGGTCTGGATTCTAGAAGGTATCCTATACTACCTCGCCCAATCCAACGCCATGCAACTGCTGAGAATTTTAGCTAACAATTGTGTCTTAACTCACACGGTCATCCTAGCAGACTTCATGAATAAGTCATCAACCACGCTATCCAATTCAGTATTCCAATTTTACAGTGATTGGCCAGACCAACTTTTACCATCTATTGGCTTCACACATGTAAAACTTTCACAAATTGGAGACCCAGATGCCCATTTCGGCCTCTTGAATGATCCATTAAATCTCTTCAACAAGCTCCGCAACTTGCCTAGGTCATTACAAACCAATCCAGATGACGGAACACCATGCTGTCGCTTGTACTTGGTGGAAGCTTCTGGTTCACCCGATCAAAGTTCTGCGCATAATAAGGAGTCGGTCATTCGGTCCTGA

Protein sequence

>MsG0380017773.01.T01

MSDQVNGLQDNQAWPELNLPDLLHTDPVRQVHATIEKEWDFLQRSACQTAAGRAMWKHVIHDPLAALLAGETYLRNLHEKMRKDYLNNARETSGVILAVRTLWFDSRLEDVLSSPNGREAQVVLLGAGMDTRAYRLSCLKDSDVFEVDFAEVLEVKSTILQAAKESTYESQHIMSKAKSLTRVAADIRENDWMEKLQIAGFLPQKSTVWILEGILYYLAQSNAMQLLRILANNCVLTHTVILADFMNKSSTTLSNSVFQFYSDWPDQLLPSIGFTHVKLSQIGDPDAHFGLLNDPLNLFNKLRNLPRSLQTNPDDGTPCCRLYLVEASGSPDQSSAHNKESVIRS*