AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024309.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024309.01.T01 MTR_5g008750 98.162 272 4 1 1 271 1 272 0.0 545
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024309.01.T01 AT1G71500 80.769 208 40 0 63 270 79 286 3.65e-117 337

Find 96 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGGTAAAGCAGCTGTTAT+TGG 0.227563 5:+3242859 MsG0580024309.01.T01:CDS
CAATGCTTCCAAACGCAATT+TGG 0.233273 5:-3243062 None:intergenic
CAATCGATGCAAGATTTCTT+TGG 0.246671 5:-3243309 None:intergenic
TTTGAAGGGGACAGGTTTCT+TGG 0.252403 5:+3242927 MsG0580024309.01.T01:CDS
TACATGATGAGTTTAGTTTC+TGG 0.288384 5:+3243188 MsG0580024309.01.T01:three_prime_UTR
AAATATTTGCCATTGAAAAT+AGG 0.303614 5:+3241235 MsG0580024309.01.T01:CDS
TATTGGATTCCTTCTGTTGT+TGG 0.321162 5:+3242876 MsG0580024309.01.T01:CDS
AATTAGACATTGGCCGTGTT+TGG 0.329014 5:+3242979 MsG0580024309.01.T01:exon
GATGAGAGTCAACTGGGATT+TGG 0.344981 5:+3242811 MsG0580024309.01.T01:CDS
TGTTTGGATGCACATATCTT+TGG 0.363824 5:+3243355 MsG0580024309.01.T01:three_prime_UTR
GAAGAGCAGGAGAGGGATAG+AGG 0.369307 5:-3240961 None:intergenic
AGCGCCGTCACCGGCACAAC+CGG 0.370822 5:-3241144 None:intergenic
GTGACCAATCGCAAAGACTT+TGG 0.373345 5:-3241066 None:intergenic
TAGTTACAAGGCATACAAAA+AGG 0.378739 5:-3243151 None:intergenic
ACTCTCAGAACAGCATTGTT+TGG 0.384246 5:-3242517 None:intergenic
AGGTTGTAAAATTCATTTCC+AGG 0.388562 5:+3243382 MsG0580024309.01.T01:three_prime_UTR
AGTGTGTGTTTGAGAAGAGC+AGG 0.401321 5:-3240974 None:intergenic
TGGCGGGAGAGGAGAAGAAA+AGG 0.404281 5:-3241024 None:intergenic
CAAATTGCGTTTGGAAGCAT+TGG 0.405142 5:+3243063 MsG0580024309.01.T01:three_prime_UTR
AGTTTCTGTTTCTGCATTTG+TGG 0.405312 5:-3240882 None:intergenic
ACTTATCAGTTCACCGGCAT+TGG 0.405348 5:-3243020 None:intergenic
GTTAAGTTAGCAAATATGTT+TGG 0.407527 5:+3243339 MsG0580024309.01.T01:three_prime_UTR
GTTGGTAGCGGCCATGGAAA+TGG 0.411203 5:-3240938 None:intergenic
TGACCAATCGCAAAGACTTT+GGG 0.427955 5:-3241065 None:intergenic
GAGTTCTAACACCTGCTTTG+AGG 0.431159 5:+3242536 MsG0580024309.01.T01:CDS
GCGATTGGTCACTACGTGTA+AGG 0.435232 5:+3241077 MsG0580024309.01.T01:CDS
TCGCGTCTCCAAATTGCGTT+TGG 0.438075 5:+3243054 MsG0580024309.01.T01:three_prime_UTR
AAGAGCAGGAGAGGGATAGA+GGG 0.443083 5:-3240960 None:intergenic
TAGAGGGTTGGTAGCGGCCA+TGG 0.452401 5:-3240944 None:intergenic
CGGTGACGGCGCTGCCGAGA+GGG 0.459160 5:+3241154 MsG0580024309.01.T01:CDS
AACTGGGATTTGGTTTCAAT+AGG 0.460026 5:+3242821 MsG0580024309.01.T01:CDS
AGCGGCCATGGAAATGGAAA+TGG 0.462764 5:-3240932 None:intergenic
CCATTCCATTTCCATTTCCA+TGG 0.463549 5:+3240927 MsG0580024309.01.T01:exon
AGCGGTTAGAGTGGCGGGAG+AGG 0.473023 5:-3241035 None:intergenic
GGTGGTTGATGAGAGTCAAC+TGG 0.480124 5:+3242804 MsG0580024309.01.T01:CDS
AGCACATTTGATCTAAGAAC+AGG 0.481228 5:+3242475 MsG0580024309.01.T01:CDS
TCAGAATAAGCACCTTCAGC+AGG 0.482430 5:-3241261 None:intergenic
GTGTTTGAGAAGAGCAGGAG+AGG 0.489201 5:-3240969 None:intergenic
TCTAAGAACAGGAGAGATCA+AGG 0.490541 5:+3242486 MsG0580024309.01.T01:CDS
TGCGTAGCGGTTAGAGTGGC+GGG 0.497650 5:-3241040 None:intergenic
CTACTGAAATTCTCTTTAGC+GGG 0.502112 5:+3242638 MsG0580024309.01.T01:CDS
GCTGAAGGTGCTTATTCTGA+GGG 0.503715 5:+3241264 MsG0580024309.01.T01:CDS
GTAACTAACCTGTGTGAGCT+TGG 0.505958 5:-3241298 None:intergenic
GCAGGAGAGGGATAGAGGGT+TGG 0.508740 5:-3240956 None:intergenic
TGCTGAAGGTGCTTATTCTG+AGG 0.509178 5:+3241263 MsG0580024309.01.T01:CDS
TGTTTGAGAAGAGCAGGAGA+GGG 0.509351 5:-3240968 None:intergenic
CGGCGCTGCCGAGAGGGGAG+AGG 0.510141 5:+3241160 MsG0580024309.01.T01:CDS
TATGACTGTTTAGGTCAGAA+TGG 0.512563 5:+3242783 MsG0580024309.01.T01:intron
TCAAATGTGCTGTCAGTTGT+TGG 0.515547 5:-3242463 None:intergenic
GGTAGCATTCTTTCCAATGC+CGG 0.521169 5:+3243007 MsG0580024309.01.T01:three_prime_UTR
AAACTGGGTTCCGGTTGTGC+CGG 0.521653 5:+3241134 MsG0580024309.01.T01:CDS
ACATCGCTTGCTGTTATACC+AGG 0.526210 5:-3242670 None:intergenic
ACAAAGAGGTTCCTCAAAGC+AGG 0.529140 5:-3242547 None:intergenic
GAAAAGGTTTACGTGGGAGA+AGG 0.529528 5:-3241008 None:intergenic
ATGCACATATCTTTGGTGAC+AGG 0.530497 5:+3243362 MsG0580024309.01.T01:three_prime_UTR
AGGAGAAGAAAAGGTTTACG+TGG 0.531404 5:-3241015 None:intergenic
ACGCCCAAAGTCTTTGCGAT+TGG 0.531722 5:+3241062 MsG0580024309.01.T01:CDS
AGCATCAGATTTGAAACCTC+CGG 0.532026 5:-3242614 None:intergenic
AATATTTATATCAGCATCAC+CGG 0.534811 5:+3242595 MsG0580024309.01.T01:CDS
CCTCTCGGCAGCGCCGTCAC+CGG 0.535950 5:-3241153 None:intergenic
TTTGCTACTTATCAGTTCAC+CGG 0.540142 5:-3243026 None:intergenic
GGTTCCGGTTGTGCCGGTGA+CGG 0.540591 5:+3241140 MsG0580024309.01.T01:CDS
CATTGGCCGTGTTTGGATTG+CGG 0.546897 5:+3242986 MsG0580024309.01.T01:three_prime_UTR
GCTACTGAAATTCTCTTTAG+CGG 0.547042 5:+3242637 MsG0580024309.01.T01:CDS
GAGGGATAGAGGGTTGGTAG+CGG 0.549456 5:-3240950 None:intergenic
GTGCGTAGCGGTTAGAGTGG+CGG 0.551558 5:-3241041 None:intergenic
CAAATGTGCTGTCAGTTGTT+GGG 0.553575 5:-3242462 None:intergenic
TTACGTGGGAGAAGGAAATG+AGG 0.558204 5:-3241000 None:intergenic
CCATGGAAATGGAAATGGAA+TGG 0.558450 5:-3240927 None:intergenic
GGAGAAGAAAAGGTTTACGT+GGG 0.562615 5:-3241014 None:intergenic
CCGGTGACGGCGCTGCCGAG+AGG 0.566317 5:+3241153 MsG0580024309.01.T01:CDS
CAGAATAAGCACCTTCAGCA+GGG 0.566319 5:-3241260 None:intergenic
AGGCGTGTCATAATTCAAGA+AGG 0.569370 5:+3241180 MsG0580024309.01.T01:CDS
TTTAGCGGGAAGGCTCAGCC+TGG 0.582087 5:+3242652 MsG0580024309.01.T01:CDS
TGAAATTCTCTTTAGCGGGA+AGG 0.583788 5:+3242642 MsG0580024309.01.T01:CDS
GAAAATAGGTCCCCTGCTGA+AGG 0.583894 5:+3241249 MsG0580024309.01.T01:CDS
TAATGCTCTCAATTAGACAT+TGG 0.590136 5:+3242969 MsG0580024309.01.T01:exon
ATGGAATGGAGTTTGTGAGA+AGG 0.590618 5:-3240913 None:intergenic
GGCGTGTCATAATTCAAGAA+GGG 0.590708 5:+3241181 MsG0580024309.01.T01:CDS
GGTGACGGCGCTGCCGAGAG+GGG 0.594296 5:+3241155 MsG0580024309.01.T01:CDS
GTTCGAAATCCAACAACAGA+AGG 0.602476 5:-3242885 None:intergenic
TACACTACTAGATAGTTACA+AGG 0.603077 5:-3243163 None:intergenic
GGCGTGCGTAGCGGTTAGAG+TGG 0.612488 5:-3241044 None:intergenic
ATGACACGCCTCTCCCCTCT+CGG 0.613589 5:-3241168 None:intergenic
TTTGGACGACTCTTCAGCCA+CGG 0.618145 5:-3241112 None:intergenic
GCGTGTCATAATTCAAGAAG+GGG 0.628961 5:+3241182 MsG0580024309.01.T01:CDS
AAGACTTTGGGCGTGCGTAG+CGG 0.635063 5:-3241053 None:intergenic
TAAGGCAAGTCAAGTGTCCG+TGG 0.635413 5:+3241095 MsG0580024309.01.T01:CDS
ATGCTACCGCAATCCAAACA+CGG 0.653617 5:-3242992 None:intergenic
AGAATAAGCACCTTCAGCAG+GGG 0.654961 5:-3241259 None:intergenic
GAACAGGAGAGATCAAGGAA+TGG 0.658017 5:+3242491 MsG0580024309.01.T01:CDS
GACTGTTTAGGTCAGAATGG+TGG 0.660971 5:+3242786 MsG0580024309.01.T01:intron
AGGAAGAACGAAATAATCAA+CGG 0.661244 5:+3242841 MsG0580024309.01.T01:CDS
ATTTATATCAGCATCACCGG+AGG 0.666199 5:+3242598 MsG0580024309.01.T01:CDS
GTGGTTGATGAGAGTCAACT+GGG 0.691875 5:+3242805 MsG0580024309.01.T01:CDS
AAGCGATGTCAATGTTGACG+AGG 0.697467 5:+3242684 MsG0580024309.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATACAAGATTGTATAT+TGG - Chr5:3243214-3243233 None:intergenic 15.0%
!! AAAATGTGAACTATAAAAAT+TGG - Chr5:3243264-3243283 None:intergenic 15.0%
!! AAATGTGAACTATAAAAATT+GGG - Chr5:3243263-3243282 None:intergenic 15.0%
!! TAAGCACTTATTAAAATAAT+TGG + Chr5:3241388-3241407 MsG0580024309.01.T01:intron 15.0%
!!! AGTCATTGAATTTTAAAATA+AGG - Chr5:3241751-3241770 None:intergenic 15.0%
!!! ATTTTAAAATTCAATGACTA+TGG + Chr5:3241752-3241771 MsG0580024309.01.T01:intron 15.0%
!!! TATAGTTCACATTTTATAAA+TGG + Chr5:3243269-3243288 MsG0580024309.01.T01:three_prime_UTR 15.0%
!!! TCTTTTCATTTACAAATTTT+TGG - Chr5:3241973-3241992 None:intergenic 15.0%
!!! TTTTTTTTTTATGACTGTTT+AGG + Chr5:3242774-3242793 MsG0580024309.01.T01:intron 15.0%
!! AAAAGAAAGAAGCAAAAATT+AGG + Chr5:3241987-3242006 MsG0580024309.01.T01:intron 20.0%
!! AAATATTTGCCATTGAAAAT+AGG + Chr5:3241235-3241254 MsG0580024309.01.T01:CDS 20.0%
!! ACATTCTGATCAATTATATA+TGG + Chr5:3242723-3242742 MsG0580024309.01.T01:intron 20.0%
!!! TTTCTTAGGATAATGTTTTT+AGG + Chr5:3241321-3241340 MsG0580024309.01.T01:intron 20.0%
! AAATCTGACCTAATTAAATC+AGG + Chr5:3242032-3242051 MsG0580024309.01.T01:intron 25.0%
! AACAATCAAAATTACTAGGT+TGG + Chr5:3241915-3241934 MsG0580024309.01.T01:intron 25.0%
! AATATTTATATCAGCATCAC+CGG + Chr5:3242595-3242614 MsG0580024309.01.T01:CDS 25.0%
! AATCTGACCTAATTAAATCA+GGG + Chr5:3242033-3242052 MsG0580024309.01.T01:intron 25.0%
! ACTATTTCCCTGATTTAATT+AGG - Chr5:3242043-3242062 None:intergenic 25.0%
! CATAGAGAAAACAAAACAAT+TGG - Chr5:3242422-3242441 None:intergenic 25.0%
! GTTAAGTTAGCAAATATGTT+TGG + Chr5:3243339-3243358 MsG0580024309.01.T01:three_prime_UTR 25.0%
! TGTCAACAATCAAAATTACT+AGG + Chr5:3241911-3241930 MsG0580024309.01.T01:intron 25.0%
!! AATGCATGATAATGTCAATT+GGG + Chr5:3242285-3242304 MsG0580024309.01.T01:intron 25.0%
!! ACTGAAAATCTGATTTTCAT+TGG + Chr5:3241826-3241845 MsG0580024309.01.T01:intron 25.0%
!! CAATCATGATAATGTCAATT+GGG + Chr5:3242318-3242337 MsG0580024309.01.T01:intron 25.0%
!! CCTATCAAAACAACTTTTAT+AGG + Chr5:3241348-3241367 MsG0580024309.01.T01:intron 25.0%
!! TCAATCATGATAATGTCAAT+TGG + Chr5:3242317-3242336 MsG0580024309.01.T01:intron 25.0%
!! TCTTCATCTTTGATTTACTT+TGG - Chr5:3242070-3242089 None:intergenic 25.0%
!!! CCTATAAAAGTTGTTTTGAT+AGG - Chr5:3241351-3241370 None:intergenic 25.0%
!!! GGTCTTTTTTTAAGCAAAAT+CGG + Chr5:3241867-3241886 MsG0580024309.01.T01:intron 25.0%
AAAAAAAGACGATACTTTCC+TGG - Chr5:3243403-3243422 None:intergenic 30.0%
AGGAAGAACGAAATAATCAA+CGG + Chr5:3242841-3242860 MsG0580024309.01.T01:CDS 30.0%
AGGTTGTAAAATTCATTTCC+AGG + Chr5:3243382-3243401 MsG0580024309.01.T01:three_prime_UTR 30.0%
ATGTTCGTACATATCACAAT+TGG + Chr5:3241708-3241727 MsG0580024309.01.T01:intron 30.0%
ATTAAGCGCTTATAATTGTG+TGG - Chr5:3241688-3241707 None:intergenic 30.0%
TAATGCTCTCAATTAGACAT+TGG + Chr5:3242969-3242988 MsG0580024309.01.T01:exon 30.0%
TACACTACTAGATAGTTACA+AGG - Chr5:3243166-3243185 None:intergenic 30.0%
TAGTTACAAGGCATACAAAA+AGG - Chr5:3243154-3243173 None:intergenic 30.0%
TATATATGGACTCATTGCAA+TGG + Chr5:3242737-3242756 MsG0580024309.01.T01:intron 30.0%
TGTTCGTACATATCACAATT+GGG + Chr5:3241709-3241728 MsG0580024309.01.T01:intron 30.0%
! CAATGCATGATAATGTCAAT+TGG + Chr5:3242284-3242303 MsG0580024309.01.T01:intron 30.0%
! CATCTTTGATTTACTTTGGT+TGG - Chr5:3242066-3242085 None:intergenic 30.0%
! TACATGATGAGTTTAGTTTC+TGG + Chr5:3243188-3243207 MsG0580024309.01.T01:three_prime_UTR 30.0%
! TTCGAACTTTTAACAGGTAA+GGG + Chr5:3242901-3242920 MsG0580024309.01.T01:CDS 30.0%
! TTGGATTTCGAACTTTTAAC+AGG + Chr5:3242895-3242914 MsG0580024309.01.T01:CDS 30.0%
! TTTCGAACTTTTAACAGGTA+AGG + Chr5:3242900-3242919 MsG0580024309.01.T01:CDS 30.0%
! TTTTGACAGGATATACAAAG+AGG - Chr5:3242564-3242583 None:intergenic 30.0%
!!! GGTCAGATTTTTTCAAGAAT+AGG - Chr5:3242022-3242041 None:intergenic 30.0%
!!! TTGTTTTGTTTTCTCTATGC+AGG + Chr5:3242423-3242442 MsG0580024309.01.T01:intron 30.0%
AACGTAAACGAAAAAGGTCT+TGG - Chr5:3242259-3242278 None:intergenic 35.0%
ACAACACATACAACACATCT+GGG + Chr5:3241662-3241681 MsG0580024309.01.T01:intron 35.0%
ACCCTAAGGAAAGACTAATT+CGG - Chr5:3241550-3241569 None:intergenic 35.0%
ACGTAAACGAAAAAGGTCTT+GGG - Chr5:3242258-3242277 None:intergenic 35.0%
ACTTGTGTGACATTATGTCA+CGG + Chr5:3241586-3241605 MsG0580024309.01.T01:intron 35.0%
AGCACATTTGATCTAAGAAC+AGG + Chr5:3242475-3242494 MsG0580024309.01.T01:CDS 35.0%
CAATCGATGCAAGATTTCTT+TGG - Chr5:3243312-3243331 None:intergenic 35.0%
CTACTGAAATTCTCTTTAGC+GGG + Chr5:3242638-3242657 MsG0580024309.01.T01:CDS 35.0%
GCTACTGAAATTCTCTTTAG+CGG + Chr5:3242637-3242656 MsG0580024309.01.T01:CDS 35.0%
TATGACTGTTTAGGTCAGAA+TGG + Chr5:3242783-3242802 MsG0580024309.01.T01:intron 35.0%
TATTGGATTCCTTCTGTTGT+TGG + Chr5:3242876-3242895 MsG0580024309.01.T01:CDS 35.0%
TGTTTGGATGCACATATCTT+TGG + Chr5:3243355-3243374 MsG0580024309.01.T01:three_prime_UTR 35.0%
TTCCTTAGGGTTAAGCTTAT+GGG + Chr5:3241559-3241578 MsG0580024309.01.T01:intron 35.0%
TTTCCTTAGGGTTAAGCTTA+TGG + Chr5:3241558-3241577 MsG0580024309.01.T01:intron 35.0%
! AACTGGGATTTGGTTTCAAT+AGG + Chr5:3242821-3242840 MsG0580024309.01.T01:CDS 35.0%
! CACAGGTTAGTTACTTTCTT+AGG + Chr5:3241307-3241326 MsG0580024309.01.T01:intron 35.0%
! TTTGCTACTTATCAGTTCAC+CGG - Chr5:3243029-3243048 None:intergenic 35.0%
!! AGTTTCTGTTTCTGCATTTG+TGG - Chr5:3240885-3240904 None:intergenic 35.0%
!! TCCGAATTAGTCTTTCCTTA+GGG + Chr5:3241546-3241565 MsG0580024309.01.T01:intron 35.0%
!! TTTGTTTTCTCTATGCAGGA+TGG + Chr5:3242427-3242446 MsG0580024309.01.T01:intron 35.0%
!!! TTTTGTTCGTCTGTTTTGAC+AGG - Chr5:3242577-3242596 None:intergenic 35.0%
AAACGAAAAAGGTCTTGGGT+TGG - Chr5:3242254-3242273 None:intergenic 40.0%
AACCCATAAGCTTAACCCTA+AGG - Chr5:3241564-3241583 None:intergenic 40.0%
AACGAAAAAGGTCTTGGGTT+GGG - Chr5:3242253-3242272 None:intergenic 40.0%
AACGGTAAAGCAGCTGTTAT+TGG + Chr5:3242859-3242878 MsG0580024309.01.T01:CDS 40.0%
AATTAGACATTGGCCGTGTT+TGG + Chr5:3242979-3242998 MsG0580024309.01.T01:exon 40.0%
ACTCTCAGAACAGCATTGTT+TGG - Chr5:3242520-3242539 None:intergenic 40.0%
ACTTATATGATTGCCCACGT+GGG + Chr5:3241426-3241445 MsG0580024309.01.T01:intron 40.0%
AGGAGAAGAAAAGGTTTACG+TGG - Chr5:3241018-3241037 None:intergenic 40.0%
AGGCGTGTCATAATTCAAGA+AGG + Chr5:3241180-3241199 MsG0580024309.01.T01:CDS 40.0%
ATGGAATGGAGTTTGTGAGA+AGG - Chr5:3240916-3240935 None:intergenic 40.0%
ATTTATATCAGCATCACCGG+AGG + Chr5:3242598-3242617 MsG0580024309.01.T01:CDS 40.0%
CAAATGTGCTGTCAGTTGTT+GGG - Chr5:3242465-3242484 None:intergenic 40.0%
CAATGCTTCCAAACGCAATT+TGG - Chr5:3243065-3243084 None:intergenic 40.0%
CACAACACATACAACACATC+TGG + Chr5:3241661-3241680 MsG0580024309.01.T01:intron 40.0%
CCATGGAAATGGAAATGGAA+TGG - Chr5:3240930-3240949 None:intergenic 40.0%
CCATTCCATTTCCATTTCCA+TGG + Chr5:3240927-3240946 MsG0580024309.01.T01:exon 40.0%
CTAAGGAAAGACTAATTCGG+AGG - Chr5:3241547-3241566 None:intergenic 40.0%
GAAGACAGAGGTTTAGACTA+CGG - Chr5:3242186-3242205 None:intergenic 40.0%
GATGTGTTGTATGTGTTGTG+TGG - Chr5:3241661-3241680 None:intergenic 40.0%
GCACACAACGTAAACGAAAA+AGG - Chr5:3242265-3242284 None:intergenic 40.0%
GCGTGTCATAATTCAAGAAG+GGG + Chr5:3241182-3241201 MsG0580024309.01.T01:CDS 40.0%
GGAGAAGAAAAGGTTTACGT+GGG - Chr5:3241017-3241036 None:intergenic 40.0%
GGCGTGTCATAATTCAAGAA+GGG + Chr5:3241181-3241200 MsG0580024309.01.T01:CDS 40.0%
GTCACGGTGACATTAAATCT+GGG + Chr5:3241602-3241621 MsG0580024309.01.T01:intron 40.0%
GTTCGAAATCCAACAACAGA+AGG - Chr5:3242888-3242907 None:intergenic 40.0%
TCAAATGTGCTGTCAGTTGT+TGG - Chr5:3242466-3242485 None:intergenic 40.0%
TCTAAGAACAGGAGAGATCA+AGG + Chr5:3242486-3242505 MsG0580024309.01.T01:CDS 40.0%
TGAAATTCTCTTTAGCGGGA+AGG + Chr5:3242642-3242661 MsG0580024309.01.T01:CDS 40.0%
TGAAGAGTCGTCCAAAAACT+GGG + Chr5:3241119-3241138 MsG0580024309.01.T01:CDS 40.0%
TGACCAATCGCAAAGACTTT+GGG - Chr5:3241068-3241087 None:intergenic 40.0%
TGGAAAGAAGCGATTGCTAT+AGG + Chr5:3241846-3241865 MsG0580024309.01.T01:intron 40.0%
TGTCACGGTGACATTAAATC+TGG + Chr5:3241601-3241620 MsG0580024309.01.T01:intron 40.0%
TTAGGGTTAAGCTTATGGGT+TGG + Chr5:3241563-3241582 MsG0580024309.01.T01:intron 40.0%
! AACAGGTAAGGGTCTTTTGA+AGG + Chr5:3242912-3242931 MsG0580024309.01.T01:CDS 40.0%
! ACAGGTAAGGGTCTTTTGAA+GGG + Chr5:3242913-3242932 MsG0580024309.01.T01:CDS 40.0%
! AGCATCAGATTTGAAACCTC+CGG - Chr5:3242617-3242636 None:intergenic 40.0%
! ATGCACATATCTTTGGTGAC+AGG + Chr5:3243362-3243381 MsG0580024309.01.T01:three_prime_UTR 40.0%
! CAAATTGCGTTTGGAAGCAT+TGG + Chr5:3243063-3243082 MsG0580024309.01.T01:three_prime_UTR 40.0%
! GCTGATAAGCTAGCTTCATA+CGG - Chr5:3242095-3242114 None:intergenic 40.0%
!! CTCCGAATTAGTCTTTCCTT+AGG + Chr5:3241545-3241564 MsG0580024309.01.T01:intron 40.0%
!! GGGAGACTATATTGCTTTTG+TGG + Chr5:3241202-3241221 MsG0580024309.01.T01:CDS 40.0%
AAGCGATGTCAATGTTGACG+AGG + Chr5:3242684-3242703 MsG0580024309.01.T01:CDS 45.0%
ACAAAGAGGTTCCTCAAAGC+AGG - Chr5:3242550-3242569 None:intergenic 45.0%
ACACATTGCCACACAACATC+TGG + Chr5:3241634-3241653 MsG0580024309.01.T01:intron 45.0%
ACTTATCAGTTCACCGGCAT+TGG - Chr5:3243023-3243042 None:intergenic 45.0%
AGAATAAGCACCTTCAGCAG+GGG - Chr5:3241262-3241281 None:intergenic 45.0%
AGAGGTTTAGACTACGGTGA+AGG - Chr5:3242180-3242199 None:intergenic 45.0%
AGTGTGTGTTTGAGAAGAGC+AGG - Chr5:3240977-3240996 None:intergenic 45.0%
ATGCTACCGCAATCCAAACA+CGG - Chr5:3242995-3243014 None:intergenic 45.0%
CACATTGCCACACAACATCT+GGG + Chr5:3241635-3241654 MsG0580024309.01.T01:intron 45.0%
CACTTATATGATTGCCCACG+TGG + Chr5:3241425-3241444 MsG0580024309.01.T01:intron 45.0%
CAGAATAAGCACCTTCAGCA+GGG - Chr5:3241263-3241282 None:intergenic 45.0%
CTGAAGAGTCGTCCAAAAAC+TGG + Chr5:3241118-3241137 MsG0580024309.01.T01:CDS 45.0%
GAAAAATGCCAAGCTCACAC+AGG + Chr5:3241290-3241309 MsG0580024309.01.T01:CDS 45.0%
GAAAAGGTTTACGTGGGAGA+AGG - Chr5:3241011-3241030 None:intergenic 45.0%
GAACAGGAGAGATCAAGGAA+TGG + Chr5:3242491-3242510 MsG0580024309.01.T01:CDS 45.0%
GACTGTTTAGGTCAGAATGG+TGG + Chr5:3242786-3242805 MsG0580024309.01.T01:intron 45.0%
GATGAGAGTCAACTGGGATT+TGG + Chr5:3242811-3242830 MsG0580024309.01.T01:CDS 45.0%
GATGAGTCTGAGAACTTGAG+AGG - Chr5:3241483-3241502 None:intergenic 45.0%
GGTAGCATTCTTTCCAATGC+CGG + Chr5:3243007-3243026 MsG0580024309.01.T01:three_prime_UTR 45.0%
GTAACTAACCTGTGTGAGCT+TGG - Chr5:3241301-3241320 None:intergenic 45.0%
GTGACCAATCGCAAAGACTT+TGG - Chr5:3241069-3241088 None:intergenic 45.0%
GTTAGAGGACTTGAAGACAG+AGG - Chr5:3242198-3242217 None:intergenic 45.0%
TCAAGTTCTCAGACTCATCC+TGG + Chr5:3241484-3241503 MsG0580024309.01.T01:intron 45.0%
TCAGAATAAGCACCTTCAGC+AGG - Chr5:3241264-3241283 None:intergenic 45.0%
TGTTTGAGAAGAGCAGGAGA+GGG - Chr5:3240971-3240990 None:intergenic 45.0%
TTACGTGGGAGAAGGAAATG+AGG - Chr5:3241003-3241022 None:intergenic 45.0%
TTTGAAGGGGACAGGTTTCT+TGG + Chr5:3242927-3242946 MsG0580024309.01.T01:CDS 45.0%
! AGCAGGGGACCTATTTTCAA+TGG - Chr5:3241247-3241266 None:intergenic 45.0%
! GAGTTCTAACACCTGCTTTG+AGG + Chr5:3242536-3242555 MsG0580024309.01.T01:CDS 45.0%
!! ACATCGCTTGCTGTTATACC+AGG - Chr5:3242673-3242692 None:intergenic 45.0%
!! AGCTCAGCTGATTTGAGCTA+GGG - Chr5:3242229-3242248 None:intergenic 45.0%
!! CAGGTAAGGGTCTTTTGAAG+GGG + Chr5:3242914-3242933 MsG0580024309.01.T01:CDS 45.0%
!! GCTGAAGGTGCTTATTCTGA+GGG + Chr5:3241264-3241283 MsG0580024309.01.T01:CDS 45.0%
!! GTGGTTGATGAGAGTCAACT+GGG + Chr5:3242805-3242824 MsG0580024309.01.T01:CDS 45.0%
!! TAGCTCAGCTGATTTGAGCT+AGG - Chr5:3242230-3242249 None:intergenic 45.0%
!! TGCTGAAGGTGCTTATTCTG+AGG + Chr5:3241263-3241282 MsG0580024309.01.T01:CDS 45.0%
AAGAGCAGGAGAGGGATAGA+GGG - Chr5:3240963-3240982 None:intergenic 50.0%
ACGCCCAAAGTCTTTGCGAT+TGG + Chr5:3241062-3241081 MsG0580024309.01.T01:CDS 50.0%
AGCGGCCATGGAAATGGAAA+TGG - Chr5:3240935-3240954 None:intergenic 50.0%
ATATGATTGCCCACGTGGGT+TGG + Chr5:3241430-3241449 MsG0580024309.01.T01:intron 50.0%
CATTGGCCGTGTTTGGATTG+CGG + Chr5:3242986-3243005 MsG0580024309.01.T01:three_prime_UTR 50.0%
GAAAATAGGTCCCCTGCTGA+AGG + Chr5:3241249-3241268 MsG0580024309.01.T01:CDS 50.0%
GTCGTCCAAAAACTGGGTTC+CGG + Chr5:3241125-3241144 MsG0580024309.01.T01:CDS 50.0%
GTGTGGCAATGTGTGTTGTG+TGG - Chr5:3241628-3241647 None:intergenic 50.0%
GTGTTTGAGAAGAGCAGGAG+AGG - Chr5:3240972-3240991 None:intergenic 50.0%
TAAGGCAAGTCAAGTGTCCG+TGG + Chr5:3241095-3241114 MsG0580024309.01.T01:CDS 50.0%
TCGCGTCTCCAAATTGCGTT+TGG + Chr5:3243054-3243073 MsG0580024309.01.T01:three_prime_UTR 50.0%
TTTGGACGACTCTTCAGCCA+CGG - Chr5:3241115-3241134 None:intergenic 50.0%
! CACAACCGGAACCCAGTTTT+TGG - Chr5:3241133-3241152 None:intergenic 50.0%
! CTGATTTGAGCTAGGGTCGA+AGG - Chr5:3242222-3242241 None:intergenic 50.0%
! GCGATTGGTCACTACGTGTA+AGG + Chr5:3241077-3241096 MsG0580024309.01.T01:CDS 50.0%
!! AAGGGTCTTTTGAAGGGGAC+AGG + Chr5:3242919-3242938 MsG0580024309.01.T01:CDS 50.0%
!! ATCCTGGTGCCGGTTTATGT+GGG + Chr5:3241500-3241519 MsG0580024309.01.T01:intron 50.0%
!! GGTGGTTGATGAGAGTCAAC+TGG + Chr5:3242804-3242823 MsG0580024309.01.T01:CDS 50.0%
AAACTGGGTTCCGGTTGTGC+CGG + Chr5:3241134-3241153 MsG0580024309.01.T01:CDS 55.0%
AAGACTTTGGGCGTGCGTAG+CGG - Chr5:3241056-3241075 None:intergenic 55.0%
GAAGAGCAGGAGAGGGATAG+AGG - Chr5:3240964-3240983 None:intergenic 55.0%
GCTAGGGTCGAAGGAGTTAG+AGG - Chr5:3242213-3242232 None:intergenic 55.0%
TCTCAGACTCATCCTGGTGC+CGG + Chr5:3241490-3241509 MsG0580024309.01.T01:intron 55.0%
TGGCGGGAGAGGAGAAGAAA+AGG - Chr5:3241027-3241046 None:intergenic 55.0%
TGTGTGGCCCAGATGTTGTG+TGG - Chr5:3241645-3241664 None:intergenic 55.0%
!! CATCCTGGTGCCGGTTTATG+TGG + Chr5:3241499-3241518 MsG0580024309.01.T01:intron 55.0%
!! GAGGGATAGAGGGTTGGTAG+CGG - Chr5:3240953-3240972 None:intergenic 55.0%
!! GTTGGTAGCGGCCATGGAAA+TGG - Chr5:3240941-3240960 None:intergenic 55.0%
ACCACCAGACCAACCCACGT+GGG - Chr5:3241442-3241461 None:intergenic 60.0%
ATGACACGCCTCTCCCCTCT+CGG - Chr5:3241171-3241190 None:intergenic 60.0%
GCAGGAGAGGGATAGAGGGT+TGG - Chr5:3240959-3240978 None:intergenic 60.0%
GGACCAATCCAACCGTCCAC+CGG - Chr5:3241526-3241545 None:intergenic 60.0%
GGTTTATGTGGGCCGGTGGA+CGG + Chr5:3241511-3241530 MsG0580024309.01.T01:intron 60.0%
GTCCACCGGCCCACATAAAC+CGG - Chr5:3241512-3241531 None:intergenic 60.0%
GTGCGTAGCGGTTAGAGTGG+CGG - Chr5:3241044-3241063 None:intergenic 60.0%
TGCGTAGCGGTTAGAGTGGC+GGG - Chr5:3241043-3241062 None:intergenic 60.0%
TTTAGCGGGAAGGCTCAGCC+TGG + Chr5:3242652-3242671 MsG0580024309.01.T01:CDS 60.0%
!! ATTGCCCACGTGGGTTGGTC+TGG + Chr5:3241435-3241454 MsG0580024309.01.T01:intron 60.0%
!! TAGAGGGTTGGTAGCGGCCA+TGG - Chr5:3240947-3240966 None:intergenic 60.0%
!! TGGTGCCGGTTTATGTGGGC+CGG + Chr5:3241504-3241523 MsG0580024309.01.T01:intron 60.0%
CACCACCAGACCAACCCACG+TGG - Chr5:3241443-3241462 None:intergenic 65.0%
GGCCCACATAAACCGGCACC+AGG - Chr5:3241505-3241524 None:intergenic 65.0%
GGCGTGCGTAGCGGTTAGAG+TGG - Chr5:3241047-3241066 None:intergenic 65.0%
TATGTGGGCCGGTGGACGGT+TGG + Chr5:3241515-3241534 MsG0580024309.01.T01:intron 65.0%
! AGCGGTTAGAGTGGCGGGAG+AGG - Chr5:3241038-3241057 None:intergenic 65.0%
! GGTTCCGGTTGTGCCGGTGA+CGG + Chr5:3241140-3241159 MsG0580024309.01.T01:CDS 65.0%
!! TGCCGGTTTATGTGGGCCGG+TGG + Chr5:3241507-3241526 MsG0580024309.01.T01:intron 65.0%
AGCGCCGTCACCGGCACAAC+CGG - Chr5:3241147-3241166 None:intergenic 70.0%
GGGCCGGTGGACGGTTGGAT+TGG + Chr5:3241520-3241539 MsG0580024309.01.T01:intron 70.0%
!! GCCCACGTGGGTTGGTCTGG+TGG + Chr5:3241438-3241457 MsG0580024309.01.T01:intron 70.0%
CCTCTCGGCAGCGCCGTCAC+CGG - Chr5:3241156-3241175 None:intergenic 75.0%
! CGGTGACGGCGCTGCCGAGA+GGG + Chr5:3241154-3241173 MsG0580024309.01.T01:CDS 75.0%
! GGTGACGGCGCTGCCGAGAG+GGG + Chr5:3241155-3241174 MsG0580024309.01.T01:CDS 75.0%
! CGGCGCTGCCGAGAGGGGAG+AGG + Chr5:3241160-3241179 MsG0580024309.01.T01:CDS 80.0%
!! CCGGTGACGGCGCTGCCGAG+AGG + Chr5:3241153-3241172 MsG0580024309.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 3240880 3243479 3240880 ID=MsG0580024309.01;Name=MsG0580024309.01
Chr5 mRNA 3240880 3243479 3240880 ID=MsG0580024309.01.T01;Parent=MsG0580024309.01;Name=MsG0580024309.01.T01;_AED=0.49;_eAED=0.49;_QI=66|1|1|1|1|1|3|495|271
Chr5 exon 3240880 3241311 3240880 ID=MsG0580024309.01.T01:exon:1988;Parent=MsG0580024309.01.T01
Chr5 exon 3242445 3242705 3242445 ID=MsG0580024309.01.T01:exon:1989;Parent=MsG0580024309.01.T01
Chr5 exon 3242796 3243479 3242796 ID=MsG0580024309.01.T01:exon:1990;Parent=MsG0580024309.01.T01
Chr5 five_prime_UTR 3240880 3240945 3240880 ID=MsG0580024309.01.T01:five_prime_utr;Parent=MsG0580024309.01.T01
Chr5 CDS 3240946 3241311 3240946 ID=MsG0580024309.01.T01:cds;Parent=MsG0580024309.01.T01
Chr5 CDS 3242445 3242705 3242445 ID=MsG0580024309.01.T01:cds;Parent=MsG0580024309.01.T01
Chr5 CDS 3242796 3242984 3242796 ID=MsG0580024309.01.T01:cds;Parent=MsG0580024309.01.T01
Chr5 three_prime_UTR 3242985 3243479 3242985 ID=MsG0580024309.01.T01:three_prime_utr;Parent=MsG0580024309.01.T01
Gene Sequence

>MsG0580024309.01.T01

ATGGCCGCTACCAACCCTCTATCCCTCTCCTGCTCTTCTCAAACACACACTTCTCCTCATTTCCTTCTCCCACGTAAACCTTTTCTTCTCCTCTCCCGCCACTCTAACCGCTACGCACGCCCAAAGTCTTTGCGATTGGTCACTACGTGTAAGGCAAGTCAAGTGTCCGTGGCTGAAGAGTCGTCCAAAAACTGGGTTCCGGTTGTGCCGGTGACGGCGCTGCCGAGAGGGGAGAGGCGTGTCATAATTCAAGAAGGGGAGACTATATTGCTTTTGTGGTATAAAGATCAAATATTTGCCATTGAAAATAGGTCCCCTGCTGAAGGTGCTTATTCTGAGGGCTTGAAAAATGCCAAGCTCACACAGGATGGTTGTATAGTTTGCCCAACAACTGACAGCACATTTGATCTAAGAACAGGAGAGATCAAGGAATGGTATCCAAACAATGCTGTTCTGAGAGTTCTAACACCTGCTTTGAGGAACCTCTTTGTATATCCTGTCAAAACAGACGAACAAAATATTTATATCAGCATCACCGGAGGTTTCAAATCTGATGCTGCTACTGAAATTCTCTTTAGCGGGAAGGCTCAGCCTGGTATAACAGCAAGCGATGTCAATGTTGACGAGGTCAGAATGGTGGTTGATGAGAGTCAACTGGGATTTGGTTTCAATAGGAAGAACGAAATAATCAACGGTAAAGCAGCTGTTATTGGATTCCTTCTGTTGTTGGATTTCGAACTTTTAACAGGTAAGGGTCTTTTGAAGGGGACAGGTTTCTTGGACTTCATATACTCTGCGTCTAATGCTCTCAATTAG

Protein sequence

>MsG0580024309.01.T01

MAATNPLSLSCSSQTHTSPHFLLPRKPFLLLSRHSNRYARPKSLRLVTTCKASQVSVAEESSKNWVPVVPVTALPRGERRVIIQEGETILLLWYKDQIFAIENRSPAEGAYSEGLKNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPNNAVLRVLTPALRNLFVYPVKTDEQNIYISITGGFKSDAATEILFSGKAQPGITASDVNVDEVRMVVDESQLGFGFNRKNEIINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASNALN*