AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006534.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006534.01.T01 MTR_2g010350 67.600 500 57 6 16 411 3 501 0.0 622
MsG0280006534.01.T01 MTR_2g010370 62.706 547 48 9 17 413 6 546 0.0 608
MsG0280006534.01.T01 MTR_4g092770 60.511 509 89 7 10 413 28 529 0.0 577
MsG0280006534.01.T01 MTR_5g030580 54.158 493 128 5 16 410 5 497 7.35e-172 490
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006534.01.T01 AT5G64500 56.596 470 125 5 6 396 14 483 3.44e-180 511
MsG0280006534.01.T01 AT2G22730 54.584 469 126 6 17 398 38 506 7.37e-171 488
MsG0280006534.01.T01 AT2G22730 54.095 464 125 6 17 394 38 499 1.23e-164 472
MsG0280006534.01.T01 AT2G22730 50.505 495 132 8 17 398 38 532 2.95e-159 459
MsG0280006534.01.T01 AT2G22730 50.204 490 130 8 17 394 38 525 1.28e-153 445
MsG0280006534.01.T01 AT5G65687 48.269 491 163 7 5 404 2 492 1.17e-148 431
MsG0280006534.01.T01 AT2G22730 48.558 416 113 8 78 394 1 414 1.23e-122 362
MsG0280006534.01.T01 AT2G22730 46.851 397 99 7 17 301 38 434 2.10e-107 327
MsG0280006534.01.T01 AT2G22730 50.904 332 79 4 17 264 38 369 2.37e-103 311

Find 109 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTATCAAATGCATTTA+AGG 0.118415 2:+3199814 MsG0280006534.01.T01:CDS
ACTGATTCAGATTTGGTATT+TGG 0.129701 2:+3199722 MsG0280006534.01.T01:CDS
ATGCTTCCATTTGCTATTTC+AGG 0.131188 2:+3198638 MsG0280006534.01.T01:CDS
CTTAGGTGCTTACTCATATT+GGG 0.163614 2:+3199479 MsG0280006534.01.T01:CDS
TTGGTTGGCGTTATGCATTC+TGG 0.184635 2:+3198600 MsG0280006534.01.T01:CDS
GATTAATTTGTTAAACTATT+TGG 0.194774 2:+3196608 MsG0280006534.01.T01:CDS
CTCTCAGTGACAACATTTCT+TGG 0.208157 2:+3200250 MsG0280006534.01.T01:intron
TAACAGATTGGAAGTAATTT+TGG 0.216065 2:+3198581 MsG0280006534.01.T01:intron
TCTTAGGTGCTTACTCATAT+TGG 0.225768 2:+3199478 MsG0280006534.01.T01:CDS
TATGCACTTGGCTATGTTTA+TGG 0.253229 2:+3198422 MsG0280006534.01.T01:CDS
ACCGTTGCCATTCATCTCTT+TGG 0.255031 2:+3200734 MsG0280006534.01.T01:CDS
TACAATTGTATGTGGAATAG+TGG 0.292899 2:+3199751 MsG0280006534.01.T01:CDS
CCATGATTCCCACAACTTCA+TGG 0.295748 2:+3196295 MsG0280006534.01.T01:CDS
GATATGAATTTCATAGGAAA+TGG 0.309390 2:-3201978 None:intergenic
ATAGCGTACAACTTTGTCTT+AGG 0.313540 2:+3199462 MsG0280006534.01.T01:CDS
ATAGCTAGCAATGGTGTTAA+TGG 0.334552 2:+3196642 MsG0280006534.01.T01:CDS
TGTTCCTGTTGATTTGATAA+AGG 0.334594 2:+3198770 MsG0280006534.01.T01:CDS
TAAATATTGTAGACAACTTT+GGG 0.335747 2:-3199504 None:intergenic
TCCAGCCGCTGGACACAATA+TGG 0.344058 2:-3201421 None:intergenic
TCCATTGATATGAATTTCAT+AGG 0.345780 2:-3201984 None:intergenic
GTGCCTTCCTCACCCCTTGT+TGG 0.349853 2:+3200761 MsG0280006534.01.T01:CDS
TCTCAGTGACAACATTTCTT+GGG 0.352146 2:+3200251 MsG0280006534.01.T01:intron
TGACAATGCCCCGGCTTCTC+TGG 0.352641 2:+3198073 MsG0280006534.01.T01:CDS
TTGGCAGACTGATTCAGATT+TGG 0.357099 2:+3199715 MsG0280006534.01.T01:intron
TTAGTTATACAATACCTCTT+TGG 0.358595 2:-3196324 None:intergenic
TGTGTCCAGCGGCTGGAATA+TGG 0.373453 2:+3201427 MsG0280006534.01.T01:CDS
TCCTATGAAATTCATATCAA+TGG 0.379668 2:+3201983 MsG0280006534.01.T01:three_prime_UTR
GGGAATCATGGATGACACTA+TGG 0.383133 2:-3196283 None:intergenic
ATAAATATTGTAGACAACTT+TGG 0.392903 2:-3199505 None:intergenic
TGAGCTAGAGAGGCAAATAT+TGG 0.393358 2:-3197277 None:intergenic
TGGCTATGTTTATGGTGGTT+TGG 0.400561 2:+3198430 MsG0280006534.01.T01:CDS
AACATCCAAAGTCTTGTTCA+TGG 0.403880 2:+3196254 MsG0280006534.01.T01:CDS
ATTGGCTGGAGGATTTGTTC+TGG 0.405042 2:+3199778 MsG0280006534.01.T01:CDS
ACCCCTTGTTGGAGTTCTCC+AGG 0.406458 2:+3200772 MsG0280006534.01.T01:CDS
ATATGAATTTCATAGGAAAT+GGG 0.412946 2:-3201977 None:intergenic
ATGAGATATTGATGTTTCTT+CGG 0.414184 2:-3201817 None:intergenic
GGAATAGTGGGCACATTGGC+TGG 0.421757 2:+3199764 MsG0280006534.01.T01:CDS
CTGGACACAATATGGTTGTT+AGG 0.422253 2:-3201413 None:intergenic
AAAGGGTTTGTGCGTAAGAA+TGG 0.425733 2:-3202040 None:intergenic
GACCTTAAATGCATTTGATA+AGG 0.427906 2:-3199816 None:intergenic
AAAATGATTTCATGATAAAT+CGG 0.428841 2:-3201937 None:intergenic
TGTGCCTTTATCAAATCAAC+AGG 0.433163 2:-3198774 None:intergenic
ACATCTAGTGTTAGATAGAA+AGG 0.436620 2:+3196188 MsG0280006534.01.T01:five_prime_UTR
TTGTTAAACTATTTGGATCA+AGG 0.438250 2:+3196615 MsG0280006534.01.T01:CDS
TGGTTGGCGTTATGCATTCT+GGG 0.445125 2:+3198601 MsG0280006534.01.T01:CDS
ACCATATTGTGTCCAGCGGC+TGG 0.445261 2:+3201420 MsG0280006534.01.T01:CDS
GTAGACATGGCCATGGATAA+AGG 0.447565 2:-3200713 None:intergenic
GCGGCTGGAATATGGTTTAT+CGG 0.450229 2:+3201435 MsG0280006534.01.T01:CDS
AAAAGCAAACCAGAGAAGCC+GGG 0.461774 2:-3198082 None:intergenic
CTGTATAGGCTGGTTGGTGT+TGG 0.467793 2:+3198011 MsG0280006534.01.T01:intron
TCTGTACCTTTCAACTGTAA+AGG 0.468312 2:-3198674 None:intergenic
GATTCAGATTTGGTATTTGG+AGG 0.468406 2:+3199725 MsG0280006534.01.T01:CDS
CCATGAAGTTGTGGGAATCA+TGG 0.468969 2:-3196295 None:intergenic
AATGGTGTTAATGGAAGTAC+AGG 0.469707 2:+3196651 MsG0280006534.01.T01:CDS
ATTATTCTGTATAGGCTGGT+TGG 0.470521 2:+3198005 MsG0280006534.01.T01:intron
ATTCACATTTCTGCATAAGA+AGG 0.471652 2:-3200293 None:intergenic
ATCAATTTAGTGTTAACAGA+TGG 0.475452 2:+3202152 MsG0280006534.01.T01:three_prime_UTR
TGCAGGATAGCATTAACAAC+TGG 0.476380 2:+3201373 MsG0280006534.01.T01:intron
GGAGGAATTACAATTGTATG+TGG 0.480593 2:+3199743 MsG0280006534.01.T01:CDS
TTCTTATGCAGAAATGTGAA+TGG 0.488398 2:+3200295 MsG0280006534.01.T01:CDS
TGTGCGTAAGAATGGAAGAT+GGG 0.490206 2:-3202032 None:intergenic
GTACCTGACACAGTTGCATC+AGG 0.504773 2:+3198798 MsG0280006534.01.T01:CDS
ACTCCTGATGCAACTGTGTC+AGG 0.507213 2:-3198801 None:intergenic
TCGGTCTTCTCTTGAAGTAA+CGG 0.507598 2:-3201798 None:intergenic
ATGGATAAAGGTCTCAAACT+TGG 0.508812 2:-3200701 None:intergenic
GACCTGGAGAACTCCAACAA+GGG 0.512863 2:-3200774 None:intergenic
GGTGTAAACCATGAAGTTGT+GGG 0.513168 2:-3196303 None:intergenic
ACAGTTGCATCAGGAGTTCA+TGG 0.514390 2:+3198807 MsG0280006534.01.T01:CDS
ATGAAGCCTTTACAGTTGAA+AGG 0.521699 2:+3198668 MsG0280006534.01.T01:CDS
CTCAGTGACAACATTTCTTG+GGG 0.529695 2:+3200252 MsG0280006534.01.T01:intron
TTGTGCGTAAGAATGGAAGA+TGG 0.531323 2:-3202033 None:intergenic
TGGTTCCATGAACAAGACTT+TGG 0.542185 2:-3196259 None:intergenic
CACATCTCCAAAGAGATGAA+TGG 0.546684 2:-3200741 None:intergenic
TTAGGTGCTTACTCATATTG+GGG 0.554059 2:+3199480 MsG0280006534.01.T01:CDS
GAGAACTCCAACAAGGGGTG+AGG 0.555912 2:-3200768 None:intergenic
ATAAACCATATTCCAGCCGC+TGG 0.562993 2:-3201432 None:intergenic
ATGAATGGCAACGGTAGACA+TGG 0.568087 2:-3200726 None:intergenic
AAGTTTGAGACCTTTATCCA+TGG 0.571776 2:+3200703 MsG0280006534.01.T01:CDS
ATACCATCTGGATATGCACT+TGG 0.571968 2:+3198410 MsG0280006534.01.T01:CDS
ACAATTGTATGTGGAATAGT+GGG 0.577169 2:+3199752 MsG0280006534.01.T01:CDS
TGGTGTAAACCATGAAGTTG+TGG 0.580859 2:-3196304 None:intergenic
CTTCATGGTTTACACCAAAG+AGG 0.583890 2:+3196310 MsG0280006534.01.T01:CDS
AGGAATATTTGTGCATAGTG+TGG 0.587748 2:+3201734 MsG0280006534.01.T01:intron
TTATCAAATGCATTTAAGGT+CGG 0.588619 2:+3199818 MsG0280006534.01.T01:CDS
GCACTTGGCTATGTTTATGG+TGG 0.591399 2:+3198425 MsG0280006534.01.T01:CDS
ACTCCAACAAGGGGTGAGGA+AGG 0.592984 2:-3200764 None:intergenic
TTTCATTGATGACAATGCCC+CGG 0.593463 2:+3198064 MsG0280006534.01.T01:CDS
TGAAGACATACAAAATTCAC+CGG 0.596057 2:-3200668 None:intergenic
AAAGCAAACCAGAGAAGCCG+GGG 0.600500 2:-3198081 None:intergenic
GGCAACGGTAGACATGGCCA+TGG 0.609428 2:-3200720 None:intergenic
GGGGCATTGTCATCAATGAA+AGG 0.612101 2:-3198062 None:intergenic
TGACCTGGAGAACTCCAACA+AGG 0.616410 2:-3200775 None:intergenic
TAGGCTGGTTGGTGTTGGTG+AGG 0.618424 2:+3198016 MsG0280006534.01.T01:intron
ACCTGGAGAACTCCAACAAG+GGG 0.622922 2:-3200773 None:intergenic
GGAATCATGGATGACACTAT+GGG 0.627440 2:-3196282 None:intergenic
TGTCTACAATATTTATAACA+TGG 0.628485 2:+3199512 MsG0280006534.01.T01:CDS
TCCAAAGAGATGAATGGCAA+CGG 0.630729 2:-3200735 None:intergenic
TAATTACCTCTGAGCTAGAG+AGG 0.634819 2:-3197287 None:intergenic
CAAGGAGCAATAGCTAGCAA+TGG 0.636477 2:+3196633 MsG0280006534.01.T01:CDS
AACAACCATATTGTGTCCAG+CGG 0.642017 2:+3201416 MsG0280006534.01.T01:CDS
GCATTGTCATCAATGAAAGG+TGG 0.643797 2:-3198059 None:intergenic
GTGCGTAAGAATGGAAGATG+GGG 0.644839 2:-3202031 None:intergenic
TAGCCAAGTGCATATCCAGA+TGG 0.650333 2:-3198413 None:intergenic
ATCATGGATGACACTATGGG+TGG 0.677731 2:-3196279 None:intergenic
ATAGTGGGCACATTGGCTGG+AGG 0.691542 2:+3199767 MsG0280006534.01.T01:CDS
ATGTGGAATAGTGGGCACAT+TGG 0.702676 2:+3199760 MsG0280006534.01.T01:CDS
GTGTGTATCAGAAAACAACA+TGG 0.704469 2:+3198366 MsG0280006534.01.T01:intron
ATAGAAGGAAAGTACCTGAG+TGG 0.719596 2:-3200359 None:intergenic
TATTTGCCTCTCTAGCTCAG+AGG 0.719961 2:+3197281 MsG0280006534.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGATTTCATGATAAAT+CGG - Chr2:3201940-3201959 None:intergenic 15.0%
!! AATCTGAAAAATAATACTTT+GGG - Chr2:3201228-3201247 None:intergenic 15.0%
!! ATATACAAGAAATCAATAAT+TGG - Chr2:3199056-3199075 None:intergenic 15.0%
!! ATTATGTAAAGAAATTTACA+AGG - Chr2:3198112-3198131 None:intergenic 15.0%
!! GTATATCTAATAATAAGAAT+AGG - Chr2:3197345-3197364 None:intergenic 15.0%
!! TCAAAAAAAATTCTAACTTA+TGG - Chr2:3201696-3201715 None:intergenic 15.0%
!! TGTATAAAATAAAACATGTT+TGG + Chr2:3199619-3199638 MsG0280006534.01.T01:intron 15.0%
!! TTATGTAAAGAAATTTACAA+GGG - Chr2:3198111-3198130 None:intergenic 15.0%
!!! AATCATAGTTTTGAAAATAA+AGG - Chr2:3202061-3202080 None:intergenic 15.0%
!!! ATCATAGTTTTGAAAATAAA+GGG - Chr2:3202060-3202079 None:intergenic 15.0%
!!! GATTAATTTGTTAAACTATT+TGG + Chr2:3196608-3196627 MsG0280006534.01.T01:CDS 15.0%
!! AAAAAAATTCTAACTTATGG+AGG - Chr2:3201693-3201712 None:intergenic 20.0%
!! AAATATATGAATTGTGAGAA+AGG - Chr2:3197757-3197776 None:intergenic 20.0%
!! AATCATTAGTACTAAACTTA+TGG + Chr2:3197949-3197968 MsG0280006534.01.T01:intron 20.0%
!! ACAAATAGATAATTAAGTCA+CGG - Chr2:3199435-3199454 None:intergenic 20.0%
!! ATAAATATTGTAGACAACTT+TGG - Chr2:3199508-3199527 None:intergenic 20.0%
!! ATAGAAGAGAAAAATATACA+AGG - Chr2:3202118-3202137 None:intergenic 20.0%
!! ATATGAATTTCATAGGAAAT+GGG - Chr2:3201980-3201999 None:intergenic 20.0%
!! GAAATCAATAATTGGAAAAA+TGG - Chr2:3199048-3199067 None:intergenic 20.0%
!! GAATCTGAAAAATAATACTT+TGG - Chr2:3201229-3201248 None:intergenic 20.0%
!! GTCTAACATTTATAATTTAG+TGG + Chr2:3199082-3199101 MsG0280006534.01.T01:intron 20.0%
!! GTTTATATTATCAATGTTCT+AGG + Chr2:3199222-3199241 MsG0280006534.01.T01:intron 20.0%
!! TAAATATTGTAGACAACTTT+GGG - Chr2:3199507-3199526 None:intergenic 20.0%
!! TAAGTTTACAATGTAAAATC+AGG + Chr2:3201028-3201047 MsG0280006534.01.T01:intron 20.0%
!! TAATATAAACATTATCAAGC+AGG - Chr2:3199212-3199231 None:intergenic 20.0%
!! TGACTTAATTATCTATTTGT+AGG + Chr2:3199435-3199454 MsG0280006534.01.T01:intron 20.0%
!! TGTCTACAATATTTATAACA+TGG + Chr2:3199512-3199531 MsG0280006534.01.T01:CDS 20.0%
!! TTAATATACCTTTACTATCA+TGG + Chr2:3199569-3199588 MsG0280006534.01.T01:intron 20.0%
!!! AAAGGTATATTAATGCATAA+GGG - Chr2:3199562-3199581 None:intergenic 20.0%
!!! AATGTTCTTTTTTGTTTTGT+AGG + Chr2:3196565-3196584 MsG0280006534.01.T01:intron 20.0%
!!! ATAAACGTTTTATCCAATTT+TGG + Chr2:3196452-3196471 MsG0280006534.01.T01:intron 20.0%
!!! ATTTAAGATTTCTTTACTTG+AGG + Chr2:3200006-3200025 MsG0280006534.01.T01:intron 20.0%
!!! TAAACGTTTTATCCAATTTT+GGG + Chr2:3196453-3196472 MsG0280006534.01.T01:intron 20.0%
!!! TAAAGGTATATTAATGCATA+AGG - Chr2:3199563-3199582 None:intergenic 20.0%
!!! TATTACTTTCATACCTTTTT+AGG + Chr2:3199866-3199885 MsG0280006534.01.T01:intron 20.0%
! AAAAATCCTGAAATAGCAAA+TGG - Chr2:3198647-3198666 None:intergenic 25.0%
! AAACTATACATCGTTTGTAT+TGG + Chr2:3201107-3201126 MsG0280006534.01.T01:intron 25.0%
! AAATAGATAATTAAGTCACG+GGG - Chr2:3199433-3199452 None:intergenic 25.0%
! AACAAGAAATCAAGAACATA+GGG + Chr2:3196716-3196735 MsG0280006534.01.T01:intron 25.0%
! AAGAACTAAATCTCATTGTA+CGG + Chr2:3200590-3200609 MsG0280006534.01.T01:intron 25.0%
! AAGATACTATGAACCTAAAA+AGG - Chr2:3199882-3199901 None:intergenic 25.0%
! AATTGAAACAAACCCAAAAT+TGG - Chr2:3196468-3196487 None:intergenic 25.0%
! AATTTGATATCATTGCTCTA+TGG - Chr2:3197460-3197479 None:intergenic 25.0%
! ACAATATTTATAACATGGTG+AGG + Chr2:3199517-3199536 MsG0280006534.01.T01:intron 25.0%
! AGAATAGGTTTCATATTGAT+TGG - Chr2:3197330-3197349 None:intergenic 25.0%
! AGCAAAATTACTACAATAGT+TGG + Chr2:3197586-3197605 MsG0280006534.01.T01:intron 25.0%
! AGTAAAATAACCTCTACATT+TGG + Chr2:3200542-3200561 MsG0280006534.01.T01:intron 25.0%
! ATCAATTTAGTGTTAACAGA+TGG + Chr2:3202152-3202171 MsG0280006534.01.T01:three_prime_UTR 25.0%
! ATCTAAATTTCCAAATGTAG+AGG - Chr2:3200555-3200574 None:intergenic 25.0%
! ATGAGATATTGATGTTTCTT+CGG - Chr2:3201820-3201839 None:intergenic 25.0%
! ATGTTACACTATCAATGTTA+GGG - Chr2:3197121-3197140 None:intergenic 25.0%
! ATTTGCAACTTATCTTATGA+AGG - Chr2:3197399-3197418 None:intergenic 25.0%
! CAAATAGATAATTAAGTCAC+GGG - Chr2:3199434-3199453 None:intergenic 25.0%
! CAACATAATTTCCAAAACAA+AGG - Chr2:3200873-3200892 None:intergenic 25.0%
! CAATGATTAAAAACTGCAAA+TGG - Chr2:3200845-3200864 None:intergenic 25.0%
! CGTATAAATTCAATGCTTTA+AGG + Chr2:3196949-3196968 MsG0280006534.01.T01:intron 25.0%
! GATATGAATTTCATAGGAAA+TGG - Chr2:3201981-3202000 None:intergenic 25.0%
! GGAAAAATGGTTATTTAAGA+AGG - Chr2:3199035-3199054 None:intergenic 25.0%
! GTAAATCCATTTAGACTTAT+AGG + Chr2:3197783-3197802 MsG0280006534.01.T01:intron 25.0%
! TAATTTCCAAAACAAAGGTA+TGG - Chr2:3200868-3200887 None:intergenic 25.0%
! TACTAAATATCCATATGTAC+TGG + Chr2:3198494-3198513 MsG0280006534.01.T01:intron 25.0%
! TAGTATTTAGTATTAGACAG+TGG - Chr2:3198479-3198498 None:intergenic 25.0%
! TAGTTTACTTCATACATCTA+TGG + Chr2:3201161-3201180 MsG0280006534.01.T01:intron 25.0%
! TCCATTGATATGAATTTCAT+AGG - Chr2:3201987-3202006 None:intergenic 25.0%
! TCCTATGAAATTCATATCAA+TGG + Chr2:3201983-3202002 MsG0280006534.01.T01:three_prime_UTR 25.0%
! TGAAATTGAATGTGTATTTG+AGG + Chr2:3197500-3197519 MsG0280006534.01.T01:intron 25.0%
! TGAATATTTACATTTGCTTG+CGG + Chr2:3200630-3200649 MsG0280006534.01.T01:intron 25.0%
! TGTATGAAGTAAACTATGTT+AGG - Chr2:3201157-3201176 None:intergenic 25.0%
! TTAGTTATACAATACCTCTT+TGG - Chr2:3196327-3196346 None:intergenic 25.0%
! TTCTTGTCAAGAATTTAACT+AGG - Chr2:3200506-3200525 None:intergenic 25.0%
! TTGAAAATCTAATCAAGCTT+AGG + Chr2:3198137-3198156 MsG0280006534.01.T01:intron 25.0%
! TTGTTAAACTATTTGGATCA+AGG + Chr2:3196615-3196634 MsG0280006534.01.T01:CDS 25.0%
! TTTACAATATGAAGTTCACA+GGG - Chr2:3199355-3199374 None:intergenic 25.0%
!! ATAGGGTTGTAATTTGTAAA+CGG + Chr2:3199957-3199976 MsG0280006534.01.T01:intron 25.0%
!! ATGTTAAACTTGGCTTATTT+TGG + Chr2:3199696-3199715 MsG0280006534.01.T01:intron 25.0%
!! CAAACAAGTGAATTTTGTTA+AGG - Chr2:3198909-3198928 None:intergenic 25.0%
!! TAACAGATTGGAAGTAATTT+TGG + Chr2:3198581-3198600 MsG0280006534.01.T01:intron 25.0%
!! TAGTTAAAAGTTTAGCTTAC+TGG - Chr2:3200178-3200197 None:intergenic 25.0%
!! TTATCAAATGCATTTAAGGT+CGG + Chr2:3199818-3199837 MsG0280006534.01.T01:CDS 25.0%
!! TTTCTTGTTCTTTTCTCTAT+TGG + Chr2:3200319-3200338 MsG0280006534.01.T01:CDS 25.0%
!! TTTTACAATATGAAGTTCAC+AGG - Chr2:3199356-3199375 None:intergenic 25.0%
!!! AACTTGAACAATTTTGAAGA+TGG + Chr2:3197211-3197230 MsG0280006534.01.T01:CDS 25.0%
!!! AATTCAATGCTTTAAGGTTT+TGG + Chr2:3196955-3196974 MsG0280006534.01.T01:intron 25.0%
!!! AGTTTTATCATCTGCTTTTA+TGG + Chr2:3197234-3197253 MsG0280006534.01.T01:CDS 25.0%
!!! ATCTGACAGATTCTTATTTT+AGG + Chr2:3199124-3199143 MsG0280006534.01.T01:intron 25.0%
!!! ATTCAATGCTTTAAGGTTTT+GGG + Chr2:3196956-3196975 MsG0280006534.01.T01:intron 25.0%
!!! CACTTTAAAGTTGTTGATTT+CGG + Chr2:3200925-3200944 MsG0280006534.01.T01:intron 25.0%
!!! TAGGAATTTTCAAGATCAAA+TGG - Chr2:3200487-3200506 None:intergenic 25.0%
!!! TTGAAAAACTTTGAGTTGAA+TGG - Chr2:3196160-3196179 None:intergenic 25.0%
!!! TTTTGGGTTTGTTTCAATTT+TGG + Chr2:3196469-3196488 MsG0280006534.01.T01:intron 25.0%
!!! TTTTTGTTTTGTAGGTTACT+TGG + Chr2:3196573-3196592 MsG0280006534.01.T01:intron 25.0%
AACAACCTAGTGATCATATT+TGG + Chr2:3196757-3196776 MsG0280006534.01.T01:intron 30.0%
ACAATTGTATGTGGAATAGT+GGG + Chr2:3199752-3199771 MsG0280006534.01.T01:CDS 30.0%
ACATCTAGTGTTAGATAGAA+AGG + Chr2:3196188-3196207 MsG0280006534.01.T01:five_prime_UTR 30.0%
ATAAAACATGTTTGGCATTC+TGG + Chr2:3199627-3199646 MsG0280006534.01.T01:intron 30.0%
ATCTTCCGTCCAATTATAAT+GGG + Chr2:3197072-3197091 MsG0280006534.01.T01:intron 30.0%
ATGAACAACCATGATAGTAA+AGG - Chr2:3199580-3199599 None:intergenic 30.0%
ATGCCTTCATTATTCTGTAT+AGG + Chr2:3197997-3198016 MsG0280006534.01.T01:intron 30.0%
ATGTAAGAACTTCAGTGTAA+TGG - Chr2:3197635-3197654 None:intergenic 30.0%
ATTAATGCATAAGGGATCAT+TGG - Chr2:3199554-3199573 None:intergenic 30.0%
ATTCACATTTCTGCATAAGA+AGG - Chr2:3200296-3200315 None:intergenic 30.0%
CAATCTGTTAATACACACAA+AGG - Chr2:3198571-3198590 None:intergenic 30.0%
CACCTTATCAAATGCATTTA+AGG + Chr2:3199814-3199833 MsG0280006534.01.T01:CDS 30.0%
CATGTTACACTATCAATGTT+AGG - Chr2:3197122-3197141 None:intergenic 30.0%
CATTCAATTTCACATCAAGA+AGG - Chr2:3197492-3197511 None:intergenic 30.0%
CTAGTGATCATATTTGGTTA+CGG + Chr2:3196763-3196782 MsG0280006534.01.T01:intron 30.0%
CTTTGTGTGTATTAACAGAT+TGG + Chr2:3198569-3198588 MsG0280006534.01.T01:intron 30.0%
GAAAGAAAAACCACAAAAGA+AGG - Chr2:3197838-3197857 None:intergenic 30.0%
GAACAAGAAATCAAGAACAT+AGG + Chr2:3196715-3196734 MsG0280006534.01.T01:intron 30.0%
GAACAATAAATTGAGCATCA+TGG + Chr2:3200062-3200081 MsG0280006534.01.T01:intron 30.0%
GACCTTAAATGCATTTGATA+AGG - Chr2:3199819-3199838 None:intergenic 30.0%
TAACTTATGGAGGACTTATT+TGG - Chr2:3201683-3201702 None:intergenic 30.0%
TACAATTGTATGTGGAATAG+TGG + Chr2:3199751-3199770 MsG0280006534.01.T01:CDS 30.0%
TACTTAGTTGGACGAAAAAT+AGG - Chr2:3196790-3196809 None:intergenic 30.0%
TAGTGATCATATTTGGTTAC+GGG + Chr2:3196764-3196783 MsG0280006534.01.T01:intron 30.0%
TATCTTCCGTCCAATTATAA+TGG + Chr2:3197071-3197090 MsG0280006534.01.T01:intron 30.0%
TGAAGACATACAAAATTCAC+CGG - Chr2:3200671-3200690 None:intergenic 30.0%
TGGTTACAGTTGTATGAAAT+AGG + Chr2:3200082-3200101 MsG0280006534.01.T01:intron 30.0%
TTAAACCAGAAATGAGTATC+AGG - Chr2:3198855-3198874 None:intergenic 30.0%
TTCTTATGCAGAAATGTGAA+TGG + Chr2:3200295-3200314 MsG0280006534.01.T01:CDS 30.0%
TTGAAATGAACGAAGCAAAA+TGG - Chr2:3198268-3198287 None:intergenic 30.0%
TTTGGAAATTATGTTGCCAA+CGG + Chr2:3200877-3200896 MsG0280006534.01.T01:intron 30.0%
! ACACATTGATGGCTAAAATT+AGG + Chr2:3200975-3200994 MsG0280006534.01.T01:intron 30.0%
! ACTGATTCAGATTTGGTATT+TGG + Chr2:3199722-3199741 MsG0280006534.01.T01:CDS 30.0%
! AGAAGGTTTTTGTTCTAACT+TGG - Chr2:3199018-3199037 None:intergenic 30.0%
! AGATGAGTCATTGTCTTTTA+AGG + Chr2:3198959-3198978 MsG0280006534.01.T01:intron 30.0%
! CACAATACATTTTCTGTGAT+CGG - Chr2:3201329-3201348 None:intergenic 30.0%
! CATATTGATTGGAACATGAA+TGG - Chr2:3197319-3197338 None:intergenic 30.0%
! CATTTTTGTCAGTTGAGTTA+GGG - Chr2:3201917-3201936 None:intergenic 30.0%
! CTATGGTCATCATAGATTTT+AGG + Chr2:3201178-3201197 MsG0280006534.01.T01:intron 30.0%
! GATTCTTTTTCCAGTACATA+TGG - Chr2:3198507-3198526 None:intergenic 30.0%
! GGTACAGATTTTTCTTGAAT+TGG + Chr2:3198689-3198708 MsG0280006534.01.T01:intron 30.0%
! GTGGTTTTTCTTTCAATTTC+TGG + Chr2:3197844-3197863 MsG0280006534.01.T01:intron 30.0%
! GTTCATTCTTCTTTGCATTT+TGG + Chr2:3196415-3196434 MsG0280006534.01.T01:intron 30.0%
! GTTGATTTCGGAAAATAAAG+TGG + Chr2:3200937-3200956 MsG0280006534.01.T01:intron 30.0%
! GTTTTTGTTCTAACTTGGAT+TGG - Chr2:3199013-3199032 None:intergenic 30.0%
! TTTTACATGTGTATACCATC+TGG + Chr2:3198398-3198417 MsG0280006534.01.T01:CDS 30.0%
!! AGATTGGAAGTAATTTTGGT+TGG + Chr2:3198585-3198604 MsG0280006534.01.T01:intron 30.0%
!! GTACAATGAGATTTAGTTCT+TGG - Chr2:3200591-3200610 None:intergenic 30.0%
!! TAATTTTAGCCATCAATGTG+TGG - Chr2:3200976-3200995 None:intergenic 30.0%
!! TGAAAGCTTTTGAGAAAATG+TGG - Chr2:3201623-3201642 None:intergenic 30.0%
!! TGCATTTTGGTATATCATGT+GGG + Chr2:3196428-3196447 MsG0280006534.01.T01:intron 30.0%
!! TGTTCCTGTTGATTTGATAA+AGG + Chr2:3198770-3198789 MsG0280006534.01.T01:CDS 30.0%
!! TTATCATCTGCTTTTATGGT+TGG + Chr2:3197238-3197257 MsG0280006534.01.T01:CDS 30.0%
!! TTGCATTTTGGTATATCATG+TGG + Chr2:3196427-3196446 MsG0280006534.01.T01:intron 30.0%
!! TTTCTTGTTCTGAGAAAAGA+AGG - Chr2:3196705-3196724 None:intergenic 30.0%
!!! TGGAATTTTTTGACACACTA+TGG + Chr2:3201347-3201366 MsG0280006534.01.T01:intron 30.0%
AAATCAACAGGAACAAAACC+TGG - Chr2:3198765-3198784 None:intergenic 35.0%
ACATCAGCACCCATTATAAT+TGG - Chr2:3197084-3197103 None:intergenic 35.0%
ACCGACGGAAAACAATAATA+GGG - Chr2:3198727-3198746 None:intergenic 35.0%
ACTTGTAACGGTCTAGTAAA+TGG + Chr2:3200150-3200169 MsG0280006534.01.T01:intron 35.0%
AGGAATATTTGTGCATAGTG+TGG + Chr2:3201734-3201753 MsG0280006534.01.T01:intron 35.0%
ATAAGCAACACTAACAGAAG+AGG - Chr2:3196545-3196564 None:intergenic 35.0%
ATACGACCTCTCACTTATAA+AGG - Chr2:3196934-3196953 None:intergenic 35.0%
ATAGCGTACAACTTTGTCTT+AGG + Chr2:3199462-3199481 MsG0280006534.01.T01:CDS 35.0%
ATGAAGCCTTTACAGTTGAA+AGG + Chr2:3198668-3198687 MsG0280006534.01.T01:CDS 35.0%
ATGGATAAAGGTCTCAAACT+TGG - Chr2:3200704-3200723 None:intergenic 35.0%
ATTATTCTGTATAGGCTGGT+TGG + Chr2:3198005-3198024 MsG0280006534.01.T01:intron 35.0%
ATTTAGTATTAGACAGTGGC+AGG - Chr2:3198475-3198494 None:intergenic 35.0%
CAACAATTGACAAATGGCAT+TGG - Chr2:3198295-3198314 None:intergenic 35.0%
CAGCCTATACAGAATAATGA+AGG - Chr2:3198003-3198022 None:intergenic 35.0%
CATAAAGAAGAAAGAACAGC+AGG - Chr2:3198318-3198337 None:intergenic 35.0%
CCAACTCCTATAAGTCTAAA+TGG - Chr2:3197792-3197811 None:intergenic 35.0%
CCATTTAGACTTATAGGAGT+TGG + Chr2:3197789-3197808 MsG0280006534.01.T01:intron 35.0%
CGATCACAGAAAATGTATTG+TGG + Chr2:3201327-3201346 MsG0280006534.01.T01:intron 35.0%
CGTAACCAAATATGATCACT+AGG - Chr2:3196765-3196784 None:intergenic 35.0%
CTGAAGTTCTTACATCTGAT+AGG + Chr2:3197640-3197659 MsG0280006534.01.T01:intron 35.0%
CTGCTGTTCTTTCTTCTTTA+TGG + Chr2:3198316-3198335 MsG0280006534.01.T01:intron 35.0%
CTGTTCTTTCTTCTTTATGG+TGG + Chr2:3198319-3198338 MsG0280006534.01.T01:intron 35.0%
CTTAGGTGCTTACTCATATT+GGG + Chr2:3199479-3199498 MsG0280006534.01.T01:CDS 35.0%
CTTCATTATTCTGTATAGGC+TGG + Chr2:3198001-3198020 MsG0280006534.01.T01:intron 35.0%
GACATCTGATGTTAATGTGT+AGG + Chr2:3201714-3201733 MsG0280006534.01.T01:intron 35.0%
GCACATACAAGGAAAAAGAT+CGG - Chr2:3197691-3197710 None:intergenic 35.0%
GGAGGAATTACAATTGTATG+TGG + Chr2:3199743-3199762 MsG0280006534.01.T01:CDS 35.0%
GTGAGAAAGGATTCTTATGT+CGG - Chr2:3197744-3197763 None:intergenic 35.0%
GTGTGTATCAGAAAACAACA+TGG + Chr2:3198366-3198385 MsG0280006534.01.T01:intron 35.0%
TAAGCAACACTAACAGAAGA+GGG - Chr2:3196544-3196563 None:intergenic 35.0%
TACCGACGGAAAACAATAAT+AGG - Chr2:3198728-3198747 None:intergenic 35.0%
TACGACCTCTCACTTATAAA+GGG - Chr2:3196933-3196952 None:intergenic 35.0%
TATGCACTTGGCTATGTTTA+TGG + Chr2:3198422-3198441 MsG0280006534.01.T01:CDS 35.0%
TCAAACCTAACCTCTCAAAT+TGG + Chr2:3201574-3201593 MsG0280006534.01.T01:intron 35.0%
TCTCAGTGACAACATTTCTT+GGG + Chr2:3200251-3200270 MsG0280006534.01.T01:intron 35.0%
TCTGTACCTTTCAACTGTAA+AGG - Chr2:3198677-3198696 None:intergenic 35.0%
TCTTAGGTGCTTACTCATAT+TGG + Chr2:3199478-3199497 MsG0280006534.01.T01:CDS 35.0%
TGCTGTTGTCATGTTAAACT+TGG + Chr2:3199686-3199705 MsG0280006534.01.T01:intron 35.0%
TGTGCCTTTATCAAATCAAC+AGG - Chr2:3198777-3198796 None:intergenic 35.0%
TTAGGTGCTTACTCATATTG+GGG + Chr2:3199480-3199499 MsG0280006534.01.T01:CDS 35.0%
TTGACATGTCACTATTGCAA+GGG + Chr2:3201477-3201496 MsG0280006534.01.T01:intron 35.0%
TTGATATCATTGCTCTATGG+TGG - Chr2:3197457-3197476 None:intergenic 35.0%
TTTAGTATTAGACAGTGGCA+GGG - Chr2:3198474-3198493 None:intergenic 35.0%
TTTGACATGTCACTATTGCA+AGG + Chr2:3201476-3201495 MsG0280006534.01.T01:intron 35.0%
! AAGTTTGAGACCTTTATCCA+TGG + Chr2:3200703-3200722 MsG0280006534.01.T01:CDS 35.0%
! AATGGTGTTAATGGAAGTAC+AGG + Chr2:3196651-3196670 MsG0280006534.01.T01:CDS 35.0%
! ATAGCTAGCAATGGTGTTAA+TGG + Chr2:3196642-3196661 MsG0280006534.01.T01:CDS 35.0%
! ATATTTTTCCTGTTGTGTGC+AGG + Chr2:3197179-3197198 MsG0280006534.01.T01:intron 35.0%
! ATTAGCCTGATACTCATTTC+TGG + Chr2:3198847-3198866 MsG0280006534.01.T01:intron 35.0%
! GAGCATTTGAGTTCAAATCT+GGG + Chr2:3196836-3196855 MsG0280006534.01.T01:intron 35.0%
! GATTCAGATTTGGTATTTGG+AGG + Chr2:3199725-3199744 MsG0280006534.01.T01:CDS 35.0%
! GCATTTTTGTCAGTTGAGTT+AGG - Chr2:3201918-3201937 None:intergenic 35.0%
! TATTTTTCCTGTTGTGTGCA+GGG + Chr2:3197180-3197199 MsG0280006534.01.T01:intron 35.0%
! TCTGTGATCGGTAATTTTCT+CGG - Chr2:3201317-3201336 None:intergenic 35.0%
! TGTATTTGAGGCAATCTTCT+TGG + Chr2:3197512-3197531 MsG0280006534.01.T01:intron 35.0%
! TTGGTGACAATGTATAGAAG+AGG - Chr2:3201664-3201683 None:intergenic 35.0%
!! AACATCCAAAGTCTTGTTCA+TGG + Chr2:3196254-3196273 MsG0280006534.01.T01:CDS 35.0%
!! AAGCTTTTGAGAAAATGTGG+TGG - Chr2:3201620-3201639 None:intergenic 35.0%
!! ACAGCTGTGGTCTTATTTAT+AGG + Chr2:3199939-3199958 MsG0280006534.01.T01:intron 35.0%
!! ATGCTTCCATTTGCTATTTC+AGG + Chr2:3198638-3198657 MsG0280006534.01.T01:CDS 35.0%
!! CAATGAGATTTAGTTCTTGG+AGG - Chr2:3200588-3200607 None:intergenic 35.0%
!! CAGCTGTGGTCTTATTTATA+GGG + Chr2:3199940-3199959 MsG0280006534.01.T01:intron 35.0%
!! GCATTTTGGTATATCATGTG+GGG + Chr2:3196429-3196448 MsG0280006534.01.T01:intron 35.0%
!! TCATTGCCATACCTTTGTTT+TGG + Chr2:3200859-3200878 MsG0280006534.01.T01:intron 35.0%
!!! TAAGGTTTTGGGTTAAGATG+TGG + Chr2:3196967-3196986 MsG0280006534.01.T01:intron 35.0%
AAAAAGCAAACCAGAGAAGC+CGG - Chr2:3198086-3198105 None:intergenic 40.0%
AAAGGGTTTGTGCGTAAGAA+TGG - Chr2:3202043-3202062 None:intergenic 40.0%
AAAGTCACGAACGCTTCTAA+CGG + Chr2:3198933-3198952 MsG0280006534.01.T01:intron 40.0%
AACAACCATATTGTGTCCAG+CGG + Chr2:3201416-3201435 MsG0280006534.01.T01:CDS 40.0%
AGCAGGCAACAATTGACAAA+TGG - Chr2:3198301-3198320 None:intergenic 40.0%
ATACCATCTGGATATGCACT+TGG + Chr2:3198410-3198429 MsG0280006534.01.T01:CDS 40.0%
ATGCATTACTTGCAAAGCAG+AGG + Chr2:3201277-3201296 MsG0280006534.01.T01:intron 40.0%
ATGTTAGGCTTACAGCTTTC+AGG - Chr2:3201142-3201161 None:intergenic 40.0%
CACATCTCCAAAGAGATGAA+TGG - Chr2:3200744-3200763 None:intergenic 40.0%
CAGCACCCATTATAATTGGA+CGG - Chr2:3197080-3197099 None:intergenic 40.0%
CCGACGGAAAACAATAATAG+GGG - Chr2:3198726-3198745 None:intergenic 40.0%
CTCAGTGACAACATTTCTTG+GGG + Chr2:3200252-3200271 MsG0280006534.01.T01:intron 40.0%
CTCTCAGTGACAACATTTCT+TGG + Chr2:3200250-3200269 MsG0280006534.01.T01:intron 40.0%
CTGGACACAATATGGTTGTT+AGG - Chr2:3201416-3201435 None:intergenic 40.0%
CTTCATGGTTTACACCAAAG+AGG + Chr2:3196310-3196329 MsG0280006534.01.T01:CDS 40.0%
GATAAGTAAAGTCTAGCCAG+TGG - Chr2:3197055-3197074 None:intergenic 40.0%
GCATTGTCATCAATGAAAGG+TGG - Chr2:3198062-3198081 None:intergenic 40.0%
GGAATCATGGATGACACTAT+GGG - Chr2:3196285-3196304 None:intergenic 40.0%
GGTGTAAACCATGAAGTTGT+GGG - Chr2:3196306-3196325 None:intergenic 40.0%
TAATTACCTCTGAGCTAGAG+AGG - Chr2:3197290-3197309 None:intergenic 40.0%
TACAACATGCAGCACATACA+AGG - Chr2:3197702-3197721 None:intergenic 40.0%
TAGGAGTTGGATTGTCAATG+TGG + Chr2:3197802-3197821 MsG0280006534.01.T01:intron 40.0%
TCCAAAGAGATGAATGGCAA+CGG - Chr2:3200738-3200757 None:intergenic 40.0%
TCGGTCTTCTCTTGAAGTAA+CGG - Chr2:3201801-3201820 None:intergenic 40.0%
TGAGCTAGAGAGGCAAATAT+TGG - Chr2:3197280-3197299 None:intergenic 40.0%
TGCAGGATAGCATTAACAAC+TGG + Chr2:3201373-3201392 MsG0280006534.01.T01:intron 40.0%
TGCATTACTTGCAAAGCAGA+GGG + Chr2:3201278-3201297 MsG0280006534.01.T01:intron 40.0%
TGGCTATGTTTATGGTGGTT+TGG + Chr2:3198430-3198449 MsG0280006534.01.T01:CDS 40.0%
TGGTGTAAACCATGAAGTTG+TGG - Chr2:3196307-3196326 None:intergenic 40.0%
TGGTTCCATGAACAAGACTT+TGG - Chr2:3196262-3196281 None:intergenic 40.0%
TGTGCGTAAGAATGGAAGAT+GGG - Chr2:3202035-3202054 None:intergenic 40.0%
TTACATGCGACAGACAGAAA+TGG - Chr2:3197871-3197890 None:intergenic 40.0%
TTGAGAGGTTAGGTTTGACT+TGG - Chr2:3201572-3201591 None:intergenic 40.0%
TTGAGCCCTTTATAAGTGAG+AGG + Chr2:3196925-3196944 MsG0280006534.01.T01:intron 40.0%
TTGTAAACGGTCTTCTGATC+TGG + Chr2:3199970-3199989 MsG0280006534.01.T01:intron 40.0%
TTGTGCGTAAGAATGGAAGA+TGG - Chr2:3202036-3202055 None:intergenic 40.0%
TTTCGTCCAACTAAGTAGCT+AGG + Chr2:3196793-3196812 MsG0280006534.01.T01:intron 40.0%
! ATCCAGAACTAGTTTACCGA+CGG - Chr2:3198742-3198761 None:intergenic 40.0%
! ATTTTTCCTGTTGTGTGCAG+GGG + Chr2:3197181-3197200 MsG0280006534.01.T01:intron 40.0%
! CATTTGAGTTCAAATCTGGG+TGG + Chr2:3196839-3196858 MsG0280006534.01.T01:intron 40.0%
! CCCCTATTATTGTTTTCCGT+CGG + Chr2:3198723-3198742 MsG0280006534.01.T01:intron 40.0%
! CTTTAGAGGACCAATTTGAG+AGG - Chr2:3201587-3201606 None:intergenic 40.0%
! GGAGCATTTGAGTTCAAATC+TGG + Chr2:3196835-3196854 MsG0280006534.01.T01:intron 40.0%
! TGCTTGCGGTTTTCTTTTCA+GGG + Chr2:3200644-3200663 MsG0280006534.01.T01:intron 40.0%
! TTGACACACTATGGTAATGC+AGG + Chr2:3201356-3201375 MsG0280006534.01.T01:intron 40.0%
! TTGCTTGCGGTTTTCTTTTC+AGG + Chr2:3200643-3200662 MsG0280006534.01.T01:intron 40.0%
! TTGGCAGACTGATTCAGATT+TGG + Chr2:3199715-3199734 MsG0280006534.01.T01:intron 40.0%
! TTTCATTGATGACAATGCCC+CGG + Chr2:3198064-3198083 MsG0280006534.01.T01:CDS 40.0%
! TTTTATGGTTGGACTTCTCG+TGG + Chr2:3197249-3197268 MsG0280006534.01.T01:CDS 40.0%
!! AAGAACATAGGGTGTTGTCA+TGG + Chr2:3196727-3196746 MsG0280006534.01.T01:intron 40.0%
!! ATAGAAGGAAAGTACCTGAG+TGG - Chr2:3200362-3200381 None:intergenic 40.0%
!! GAACTTCAGTGTAATGGACA+AGG - Chr2:3197629-3197648 None:intergenic 40.0%
!! TGGTTTGGTAAGTCTCTATC+TGG + Chr2:3198445-3198464 MsG0280006534.01.T01:intron 40.0%
!!! ACTTCTTGTTTTTGCCACTC+AGG + Chr2:3200345-3200364 MsG0280006534.01.T01:CDS 40.0%
!!! GTTGCTTTTCCACACATTGA+TGG + Chr2:3200964-3200983 MsG0280006534.01.T01:intron 40.0%
AAAAGCAAACCAGAGAAGCC+GGG - Chr2:3198085-3198104 None:intergenic 45.0%
AAGACCACAGCTGTTTAGTG+TGG - Chr2:3199933-3199952 None:intergenic 45.0%
AAGTAAAGTCTAGCCAGTGG+TGG - Chr2:3197052-3197071 None:intergenic 45.0%
ACAGCTGTTTAGTGTGGAAC+TGG - Chr2:3199927-3199946 None:intergenic 45.0%
ACAGTTGCATCAGGAGTTCA+TGG + Chr2:3198807-3198826 MsG0280006534.01.T01:CDS 45.0%
ACCGTTGCCATTCATCTCTT+TGG + Chr2:3200734-3200753 MsG0280006534.01.T01:CDS 45.0%
ACTAAGTAGCTAGGCTCAAG+TGG + Chr2:3196802-3196821 MsG0280006534.01.T01:intron 45.0%
AGAGATCTTCCTCGCATAGA+AGG - Chr2:3200377-3200396 None:intergenic 45.0%
AGGCTCAAGTGGTTCACATT+CGG + Chr2:3196813-3196832 MsG0280006534.01.T01:intron 45.0%
AGGTACTTTCCTTCTATGCG+AGG + Chr2:3200365-3200384 MsG0280006534.01.T01:intron 45.0%
AGTAAAGTCTAGCCAGTGGT+GGG - Chr2:3197051-3197070 None:intergenic 45.0%
AGTTCCACACTAAACAGCTG+TGG + Chr2:3199926-3199945 MsG0280006534.01.T01:intron 45.0%
ATAAACCATATTCCAGCCGC+TGG - Chr2:3201435-3201454 None:intergenic 45.0%
ATCATGGATGACACTATGGG+TGG - Chr2:3196282-3196301 None:intergenic 45.0%
ATGAATGGCAACGGTAGACA+TGG - Chr2:3200729-3200748 None:intergenic 45.0%
ATTACTTGCAAAGCAGAGGG+AGG + Chr2:3201281-3201300 MsG0280006534.01.T01:intron 45.0%
CAAGGAGCAATAGCTAGCAA+TGG + Chr2:3196633-3196652 MsG0280006534.01.T01:CDS 45.0%
CACACTGCTTAGAAAAGTCG+AGG + Chr2:3196902-3196921 MsG0280006534.01.T01:intron 45.0%
CAGCTGTTTAGTGTGGAACT+GGG - Chr2:3199926-3199945 None:intergenic 45.0%
CCATGAAGTTGTGGGAATCA+TGG - Chr2:3196298-3196317 None:intergenic 45.0%
CCATGATTCCCACAACTTCA+TGG + Chr2:3196295-3196314 MsG0280006534.01.T01:CDS 45.0%
CCATGCTGGGTAAGTAACAA+AGG + Chr2:3196384-3196403 MsG0280006534.01.T01:intron 45.0%
CCTGTGTTTACTAGAACCGT+TGG - Chr2:3200896-3200915 None:intergenic 45.0%
CTCCTATTTCCATCCATGCT+GGG + Chr2:3196371-3196390 MsG0280006534.01.T01:intron 45.0%
CTGGGCGCACATAATTCTTA+TGG - Chr2:3199908-3199927 None:intergenic 45.0%
CTTGAGCCTAGCTACTTAGT+TGG - Chr2:3196802-3196821 None:intergenic 45.0%
GAGGACCAATTTGAGAGGTT+AGG - Chr2:3201582-3201601 None:intergenic 45.0%
GCACTTGGCTATGTTTATGG+TGG + Chr2:3198425-3198444 MsG0280006534.01.T01:CDS 45.0%
GCGGCTGGAATATGGTTTAT+CGG + Chr2:3201435-3201454 MsG0280006534.01.T01:CDS 45.0%
GGGAATCATGGATGACACTA+TGG - Chr2:3196286-3196305 None:intergenic 45.0%
GTAGACATGGCCATGGATAA+AGG - Chr2:3200716-3200735 None:intergenic 45.0%
GTGCGTAAGAATGGAAGATG+GGG - Chr2:3202034-3202053 None:intergenic 45.0%
GTGTGTGTGTCTGTGAATGT+GGG - Chr2:3200823-3200842 None:intergenic 45.0%
TACCCAGCATGGATGGAAAT+AGG - Chr2:3196376-3196395 None:intergenic 45.0%
TAGCCAAGTGCATATCCAGA+TGG - Chr2:3198416-3198435 None:intergenic 45.0%
TGATGCAGACAGTAGATCAG+TGG - Chr2:3199260-3199279 None:intergenic 45.0%
TGGTGTTCAACTCACTTGTG+TGG + Chr2:3196987-3197006 MsG0280006534.01.T01:intron 45.0%
TGGTTGGCGTTATGCATTCT+GGG + Chr2:3198601-3198620 MsG0280006534.01.T01:CDS 45.0%
TGTGTGTGTCTGTGAATGTG+GGG - Chr2:3200822-3200841 None:intergenic 45.0%
TTACTTGCAAAGCAGAGGGA+GGG + Chr2:3201282-3201301 MsG0280006534.01.T01:intron 45.0%
TTCCGTCGGTAAACTAGTTC+TGG + Chr2:3198737-3198756 MsG0280006534.01.T01:intron 45.0%
TTCTGTCTGTCGCATGTAAG+TGG + Chr2:3197872-3197891 MsG0280006534.01.T01:intron 45.0%
TTGGTTGGCGTTATGCATTC+TGG + Chr2:3198600-3198619 MsG0280006534.01.T01:CDS 45.0%
! ACTCTTGCGACCTTCTTTTG+TGG + Chr2:3197825-3197844 MsG0280006534.01.T01:intron 45.0%
! ATTGGCTGGAGGATTTGTTC+TGG + Chr2:3199778-3199797 MsG0280006534.01.T01:CDS 45.0%
! CCAACGGTTCTAGTAAACAC+AGG + Chr2:3200893-3200912 MsG0280006534.01.T01:intron 45.0%
! CCTTTGTTACTTACCCAGCA+TGG - Chr2:3196387-3196406 None:intergenic 45.0%
! TATTTGCCTCTCTAGCTCAG+AGG + Chr2:3197281-3197300 MsG0280006534.01.T01:CDS 45.0%
! TGTTACTTACCCAGCATGGA+TGG - Chr2:3196383-3196402 None:intergenic 45.0%
! TTTTTCCTGTTGTGTGCAGG+GGG + Chr2:3197182-3197201 MsG0280006534.01.T01:intron 45.0%
!! AGGGGAGTATCATCCACATT+AGG - Chr2:3197023-3197042 None:intergenic 45.0%
!! ATGTGGAATAGTGGGCACAT+TGG + Chr2:3199760-3199779 MsG0280006534.01.T01:CDS 45.0%
!! CTTGGGGCAGCATTTTGTTT+TGG + Chr2:3200268-3200287 MsG0280006534.01.T01:CDS 45.0%
!! GGGGCATTGTCATCAATGAA+AGG - Chr2:3198065-3198084 None:intergenic 45.0%
!! GGTAAACTAGTTCTGGATCC+AGG + Chr2:3198744-3198763 MsG0280006534.01.T01:intron 45.0%
AAAGCAAACCAGAGAAGCCG+GGG - Chr2:3198084-3198103 None:intergenic 50.0%
AATCTGGGTGGAGCAATCCT+TGG + Chr2:3196851-3196870 MsG0280006534.01.T01:intron 50.0%
ACCTGGAGAACTCCAACAAG+GGG - Chr2:3200776-3200795 None:intergenic 50.0%
ACTCCTGATGCAACTGTGTC+AGG - Chr2:3198804-3198823 None:intergenic 50.0%
CCAGCATGGATGGAAATAGG+AGG - Chr2:3196373-3196392 None:intergenic 50.0%
CCTCCTATTTCCATCCATGC+TGG + Chr2:3196370-3196389 MsG0280006534.01.T01:intron 50.0%
GACCTGGAGAACTCCAACAA+GGG - Chr2:3200777-3200796 None:intergenic 50.0%
GGATCTGTAAAAGGCTGACC+TGG - Chr2:3200793-3200812 None:intergenic 50.0%
GGCTCAAGTGGTTCACATTC+GGG + Chr2:3196814-3196833 MsG0280006534.01.T01:intron 50.0%
GGTGTGTGTGTCTGTGAATG+TGG - Chr2:3200824-3200843 None:intergenic 50.0%
GTACCTGACACAGTTGCATC+AGG + Chr2:3198798-3198817 MsG0280006534.01.T01:CDS 50.0%
GTCGCATGTAAGTGGTACTG+TGG + Chr2:3197880-3197899 MsG0280006534.01.T01:intron 50.0%
TCACGTGCTACACAACACCA+AGG - Chr2:3196871-3196890 None:intergenic 50.0%
TGACCTGGAGAACTCCAACA+AGG - Chr2:3200778-3200797 None:intergenic 50.0%
! CTGTATAGGCTGGTTGGTGT+TGG + Chr2:3198011-3198030 MsG0280006534.01.T01:intron 50.0%
! GTGGTGATGCGAGACTTTAG+AGG - Chr2:3201601-3201620 None:intergenic 50.0%
! TGGTTGCTCTGAGCCTAATG+TGG + Chr2:3197007-3197026 MsG0280006534.01.T01:intron 50.0%
! TTTTCCTGTTGTGTGCAGGG+GGG + Chr2:3197183-3197202 MsG0280006534.01.T01:intron 50.0%
!! GCGGTTTTCTTTTCAGGGTC+CGG + Chr2:3200649-3200668 MsG0280006534.01.T01:intron 50.0%
AAATCCCCCCTGCACACAAC+AGG - Chr2:3197190-3197209 None:intergenic 55.0%
ACCATATTGTGTCCAGCGGC+TGG + Chr2:3201420-3201439 MsG0280006534.01.T01:CDS 55.0%
ACCCCTTGTTGGAGTTCTCC+AGG + Chr2:3200772-3200791 MsG0280006534.01.T01:CDS 55.0%
ACTCCAACAAGGGGTGAGGA+AGG - Chr2:3200767-3200786 None:intergenic 55.0%
GAGAACTCCAACAAGGGGTG+AGG - Chr2:3200771-3200790 None:intergenic 55.0%
GTGTGTCTGTGAATGTGGGG+CGG - Chr2:3200819-3200838 None:intergenic 55.0%
TCCAGCCGCTGGACACAATA+TGG - Chr2:3201424-3201443 None:intergenic 55.0%
TGTGTCCAGCGGCTGGAATA+TGG + Chr2:3201427-3201446 MsG0280006534.01.T01:CDS 55.0%
TGTGTCTGTGAATGTGGGGC+GGG - Chr2:3200818-3200837 None:intergenic 55.0%
!! ATAGTGGGCACATTGGCTGG+AGG + Chr2:3199767-3199786 MsG0280006534.01.T01:CDS 55.0%
!! GGAATAGTGGGCACATTGGC+TGG + Chr2:3199764-3199783 MsG0280006534.01.T01:CDS 55.0%
!! TAGCCAGTGGTGGGTCACAA+GGG - Chr2:3197042-3197061 None:intergenic 55.0%
!! TAGGCTGGTTGGTGTTGGTG+AGG + Chr2:3198016-3198035 MsG0280006534.01.T01:intron 55.0%
AAGCAGAGGGAGGGAAGTGG+AGG + Chr2:3201291-3201310 MsG0280006534.01.T01:intron 60.0%
GCAAAGCAGAGGGAGGGAAG+TGG + Chr2:3201288-3201307 MsG0280006534.01.T01:intron 60.0%
GGCAACGGTAGACATGGCCA+TGG - Chr2:3200723-3200742 None:intergenic 60.0%
GTGCCTTCCTCACCCCTTGT+TGG + Chr2:3200761-3200780 MsG0280006534.01.T01:CDS 60.0%
GTGTCTGTGAATGTGGGGCG+GGG - Chr2:3200817-3200836 None:intergenic 60.0%
TGACAATGCCCCGGCTTCTC+TGG + Chr2:3198073-3198092 MsG0280006534.01.T01:CDS 60.0%
TGTCTGTGAATGTGGGGCGG+GGG - Chr2:3200816-3200835 None:intergenic 60.0%
!! AGCCAGTGGTGGGTCACAAG+GGG - Chr2:3197041-3197060 None:intergenic 60.0%
!! CTAGCCAGTGGTGGGTCACA+AGG - Chr2:3197043-3197062 None:intergenic 60.0%
CTCCCCTTGTGACCCACCAC+TGG + Chr2:3197036-3197055 MsG0280006534.01.T01:intron 65.0%
GGGCGGGGGGGATCTGTAAA+AGG - Chr2:3200802-3200821 None:intergenic 65.0%
GTCTGTGAATGTGGGGCGGG+GGG - Chr2:3200815-3200834 None:intergenic 65.0%
TCTGTGAATGTGGGGCGGGG+GGG - Chr2:3200814-3200833 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 3196141 3202178 3196141 ID=MsG0280006534.01;Name=MsG0280006534.01
Chr2 mRNA 3196141 3202178 3196141 ID=MsG0280006534.01.T01;Parent=MsG0280006534.01;Name=MsG0280006534.01.T01;_AED=0.48;_eAED=0.48;_QI=105|0.75|0.84|1|0.91|1|13|312|413
Chr2 exon 3196141 3196331 3196141 ID=MsG0280006534.01.T01:exon:667;Parent=MsG0280006534.01.T01
Chr2 exon 3196587 3196679 3196587 ID=MsG0280006534.01.T01:exon:668;Parent=MsG0280006534.01.T01
Chr2 exon 3197201 3197302 3197201 ID=MsG0280006534.01.T01:exon:669;Parent=MsG0280006534.01.T01
Chr2 exon 3198019 3198094 3198019 ID=MsG0280006534.01.T01:exon:670;Parent=MsG0280006534.01.T01
Chr2 exon 3198377 3198451 3198377 ID=MsG0280006534.01.T01:exon:671;Parent=MsG0280006534.01.T01
Chr2 exon 3198587 3198689 3198587 ID=MsG0280006534.01.T01:exon:672;Parent=MsG0280006534.01.T01
Chr2 exon 3198766 3198828 3198766 ID=MsG0280006534.01.T01:exon:673;Parent=MsG0280006534.01.T01
Chr2 exon 3199457 3199533 3199457 ID=MsG0280006534.01.T01:exon:674;Parent=MsG0280006534.01.T01
Chr2 exon 3199722 3199839 3199722 ID=MsG0280006534.01.T01:exon:675;Parent=MsG0280006534.01.T01
Chr2 exon 3200257 3200366 3200257 ID=MsG0280006534.01.T01:exon:676;Parent=MsG0280006534.01.T01
Chr2 exon 3200665 3200793 3200665 ID=MsG0280006534.01.T01:exon:677;Parent=MsG0280006534.01.T01
Chr2 exon 3201378 3201456 3201378 ID=MsG0280006534.01.T01:exon:678;Parent=MsG0280006534.01.T01
Chr2 exon 3201736 3202178 3201736 ID=MsG0280006534.01.T01:exon:679;Parent=MsG0280006534.01.T01
Chr2 five_prime_UTR 3196141 3196245 3196141 ID=MsG0280006534.01.T01:five_prime_utr;Parent=MsG0280006534.01.T01
Chr2 CDS 3196246 3196331 3196246 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3196587 3196679 3196587 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3197201 3197302 3197201 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3198019 3198094 3198019 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3198377 3198451 3198377 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3198587 3198689 3198587 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3198766 3198828 3198766 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3199457 3199533 3199457 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3199722 3199839 3199722 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3200257 3200366 3200257 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3200665 3200793 3200665 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3201378 3201456 3201378 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 CDS 3201736 3201866 3201736 ID=MsG0280006534.01.T01:cds;Parent=MsG0280006534.01.T01
Chr2 three_prime_UTR 3201867 3202178 3201867 ID=MsG0280006534.01.T01:three_prime_utr;Parent=MsG0280006534.01.T01
Gene Sequence

>MsG0280006534.01.T01

ATGCAAGTAACATCCAAAGTCTTGTTCATGGAACCACCCATAGTGTCATCCATGATTCCCACAACTTCATGGTTTACACCAAAGAGGTTACTTGGTATATTTTGTGTGATTAATTTGTTAAACTATTTGGATCAAGGAGCAATAGCTAGCAATGGTGTTAATGGAAGTACAGGAATACAGGGGGATTTTAACTTGAACAATTTTGAAGATGGAGTTTTATCATCTGCTTTTATGGTTGGACTTCTCGTGGCTTCTCCAATATTTGCCTCTCTAGCTCAGAGGCTGGTTGGTGTTGGTGAGGCTTCGTTTATAAGTTTAGCACCACCTTTCATTGATGACAATGCCCCGGCTTCTCTGAAAACAACATGGCTCGCAATGTTTTACATGTGTATACCATCTGGATATGCACTTGGCTATGTTTATGGTGGTTTGATTGGAAGTAATTTTGGTTGGCGTTATGCATTCTGGGTAGAGTCTATATTGATGCTTCCATTTGCTATTTCAGGATTTTTAATGAAGCCTTTACAGTTGAAAGGTTTTGTTCCTGTTGATTTGATAAAGGCACAAGTACCTGACACAGTTGCATCAGGAGTTCATGGTCACATAGCGTACAACTTTGTCTTAGGTGCTTACTCATATTGGGGTCCCAAAGTTGTCTACAATATTTATAACATGACTGATTCAGATTTGGTATTTGGAGGAATTACAATTGTATGTGGAATAGTGGGCACATTGGCTGGAGGATTTGTTCTGGATTATATGAGTAACACCTTATCAAATGCATTTAAGGTCGTGACAACATTTCTTGGGGCAGCATTTTGTTTTGGAGCCTTCTTATGCAGAAATGTGAATGGCTTTCTTGTTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGGGTCCGGTGAATTTTGTATGTCTTCATTGTGTTAAACCAAGTTTGAGACCTTTATCCATGGCCATGTCTACCGTTGCCATTCATCTCTTTGGAGATGTGCCTTCCTCACCCCTTGTTGGAGTTCTCCAGGATAGCATTAACAACTGGAGAACAACTGCATTGATCCTAACAACCATATTGTGTCCAGCGGCTGGAATATGGTTTATCGGAATATTTGTGCATAGTGTGGATAAATTTGAAGATGACAGTGAACAACAAGTGTGCAATATACCGTTACTTCAAGAGAAGACCGAAGAAACATCAATATCTCATGCACAATCTCAATCTCATGAATGTTGA

Protein sequence

>MsG0280006534.01.T01

MQVTSKVLFMEPPIVSSMIPTTSWFTPKRLLGIFCVINLLNYLDQGAIASNGVNGSTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAQRLVGVGEASFISLAPPFIDDNAPASLKTTWLAMFYMCIPSGYALGYVYGGLIGSNFGWRYAFWVESILMLPFAISGFLMKPLQLKGFVPVDLIKAQVPDTVASGVHGHIAYNFVLGAYSYWGPKVVYNIYNMTDSDLVFGGITIVCGIVGTLAGGFVLDYMSNTLSNAFKVVTTFLGAAFCFGAFLCRNVNGFLVLFSIGELLVFATQGPVNFVCLHCVKPSLRPLSMAMSTVAIHLFGDVPSSPLVGVLQDSINNWRTTALILTTILCPAAGIWFIGIFVHSVDKFEDDSEQQVCNIPLLQEKTEETSISHAQSQSHEC*