AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010994.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010994.01.T01 MTR_2g096330 81.853 259 25 3 19 275 64 302 7.74e-142 408
MsG0280010994.01.T01 MTR_4g094130 58.470 183 75 1 93 275 1 182 2.46e-69 220
MsG0280010994.01.T01 MTR_4g094130 58.696 184 75 1 92 275 128 310 2.20e-68 221
MsG0280010994.01.T01 MTR_2g009270 59.239 184 74 1 92 275 135 317 3.80e-66 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010994.01.T01 AT5G59750 59.507 284 86 6 18 275 52 332 9.40e-102 307
MsG0280010994.01.T01 AT5G59750 64.113 248 69 3 28 275 71 298 1.44e-100 301
MsG0280010994.01.T01 AT5G59750 64.113 248 69 3 28 275 71 298 1.28e-99 301
MsG0280010994.01.T01 AT5G64300 60.326 184 72 1 92 275 142 324 1.32e-70 227
MsG0280010994.01.T01 AT2G22450 60.870 184 71 1 92 275 120 302 6.27e-70 223

Find 71 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTGGCGTAATGCATTA+AGG 0.202150 2:-78121554 None:intergenic
TATTGTTAGGATGCAAAATA+TGG 0.229542 2:+78122851 MsG0280010994.01.T01:intron
GAACAACAAGGTGAGAAATT+TGG 0.257120 2:+78121326 MsG0280010994.01.T01:five_prime_UTR
TACTGAGGCTTCTGTAGATT+TGG 0.288351 2:+78123021 MsG0280010994.01.T01:CDS
GTGATTGAAGAAAATGAAAA+TGG 0.343162 2:+78121406 MsG0280010994.01.T01:CDS
CCACCATTTCTATACTTAAG+AGG 0.347032 2:-78122977 None:intergenic
ATAAAATATGTACCTTGAAT+TGG 0.360216 2:-78121177 None:intergenic
TCCTTGGCGTAATGCATTAA+GGG 0.365334 2:-78121553 None:intergenic
TGATGTTGAAGATGGAAATA+TGG 0.367048 2:+78123090 MsG0280010994.01.T01:CDS
TTCTGTAGATTTGGTTGCAT+TGG 0.388739 2:+78123030 MsG0280010994.01.T01:CDS
GTAGATTTGGTTGCATTGGC+AGG 0.388977 2:+78123034 MsG0280010994.01.T01:CDS
ACTCATCATAGTGTAAGATT+TGG 0.392279 2:+78121297 MsG0280010994.01.T01:five_prime_UTR
AGAGCTGTGAGAACAGAAAA+TGG 0.400675 2:-78123064 None:intergenic
TTTCCTCTTAAGTATAGAAA+TGG 0.404838 2:+78122974 MsG0280010994.01.T01:CDS
GTGATCCAGATGTCCCTCTA+AGG 0.418377 2:+78121509 MsG0280010994.01.T01:CDS
AATTCTAGCTAACCTTTCCT+TGG 0.419158 2:-78121569 None:intergenic
AAATCAGTTATTGAGACAAT+TGG 0.419486 2:-78123157 None:intergenic
GTACTCCTTAGAGGGACATC+TGG 0.420921 2:-78121514 None:intergenic
TCTCAATAACTGATTTGATA+AGG 0.421147 2:+78123164 MsG0280010994.01.T01:CDS
AAGTCCTCGGATTTCGACTC+TGG 0.423258 2:-78122932 None:intergenic
AATGGAAGAGTACTCCTTAG+AGG 0.439818 2:-78121523 None:intergenic
GAATCCTCTTCTTCAGTCTC+AGG 0.446487 2:-78122711 None:intergenic
TTCTCACCTTGTTGTTCCAC+AGG 0.446496 2:-78121320 None:intergenic
TGTTGAAGGGAATCTTATAA+AGG 0.455110 2:+78122572 MsG0280010994.01.T01:CDS
TTTATGATTAAACATGGATC+AGG 0.455192 2:+78122627 MsG0280010994.01.T01:CDS
TGCATTAAGGGCATGCTCAA+TGG 0.463896 2:-78121541 None:intergenic
GATGAAAACAACAATGTTGA+AGG 0.466495 2:+78122558 MsG0280010994.01.T01:CDS
CCACTGTGATAGTGAAAGTA+GGG 0.484212 2:-78122740 None:intergenic
AATCATAAATGCCACATCCT+TGG 0.486532 2:-78122613 None:intergenic
ATAGAAATGGTGGAGTGCTT+AGG 0.494926 2:+78122987 MsG0280010994.01.T01:CDS
CCCACGTCATCACCAATTCA+AGG 0.497388 2:+78121165 MsG0280010994.01.T01:five_prime_UTR
GCTCTTGTTGATGTTGAAGA+TGG 0.508607 2:+78123082 MsG0280010994.01.T01:CDS
TGGAACTTCCACGGGTGTAT+CGG 0.515831 2:+78122871 MsG0280010994.01.T01:CDS
CCTCTTAAGTATAGAAATGG+TGG 0.517951 2:+78122977 MsG0280010994.01.T01:CDS
AAATTTGATATCCCTGCCTA+TGG 0.519545 2:+78121113 MsG0280010994.01.T01:five_prime_UTR
GGTGGAGTGCTTAGGAGAGC+TGG 0.520674 2:+78122995 MsG0280010994.01.T01:CDS
TCAGTCTCAGGTGACATAAG+AGG 0.529829 2:-78122699 None:intergenic
GGGAATGAAGCAGAGTCCAT+AGG 0.530818 2:-78121129 None:intergenic
TATTTATTCAAAGCTTGCAT+CGG 0.531008 2:+78121266 MsG0280010994.01.T01:intron
GCAAAATATGGAACTTCCAC+GGG 0.535098 2:+78122863 MsG0280010994.01.T01:CDS
GGATCAGGAATAGTTTCTGT+TGG 0.545719 2:+78122642 MsG0280010994.01.T01:CDS
ATGAAGCAGAGTCCATAGGC+AGG 0.546682 2:-78121125 None:intergenic
GTCACCTGAGACTGAAGAAG+AGG 0.559881 2:+78122707 MsG0280010994.01.T01:CDS
TCTTGTTAGTACCAAGGATG+TGG 0.568018 2:+78122602 MsG0280010994.01.T01:CDS
TGCAAAATATGGAACTTCCA+CGG 0.569828 2:+78122862 MsG0280010994.01.T01:CDS
TAATGCATTACGCCAAGGAA+AGG 0.571418 2:+78121557 MsG0280010994.01.T01:CDS
TTCTGTTGGCATGAAAGAAG+AGG 0.576477 2:+78122656 MsG0280010994.01.T01:CDS
TTCCACGGGTGTATCGGCTG+CGG 0.588754 2:+78122877 MsG0280010994.01.T01:CDS
ATGGAAGAGTACTCCTTAGA+GGG 0.590392 2:-78121522 None:intergenic
ACCACTGTGATAGTGAAAGT+AGG 0.590650 2:-78122741 None:intergenic
TTCTTTGTAAGTGAAGCTGA+AGG 0.595370 2:+78121487 MsG0280010994.01.T01:CDS
ATGAAAACAACAATGTTGAA+GGG 0.595372 2:+78122559 MsG0280010994.01.T01:CDS
ACGTGGGAAATCAAAGACTA+GGG 0.597494 2:-78121149 None:intergenic
GCCCTTAATGCATTACGCCA+AGG 0.607779 2:+78121552 MsG0280010994.01.T01:CDS
GACGTGGGAAATCAAAGACT+AGG 0.608215 2:-78121150 None:intergenic
GTGGCATTTATGATTAAACA+TGG 0.613664 2:+78122621 MsG0280010994.01.T01:CDS
TCCGAGGACTTAAGAAAACC+AGG 0.619694 2:+78122944 MsG0280010994.01.T01:CDS
ATCCGCAGCCGATACACCCG+TGG 0.629180 2:-78122879 None:intergenic
ATTTGGCCTGTGGAACAACA+AGG 0.634139 2:+78121314 MsG0280010994.01.T01:five_prime_UTR
ATAGTGTAAGATTTGGCCTG+TGG 0.635119 2:+78121304 MsG0280010994.01.T01:five_prime_UTR
AGCATCTCTTGTTAGTACCA+AGG 0.640073 2:+78122596 MsG0280010994.01.T01:CDS
GAAGACGTGTTTGATGATAG+TGG 0.645204 2:+78121384 MsG0280010994.01.T01:CDS
TGAAGCAGAGTCCATAGGCA+GGG 0.649337 2:-78121124 None:intergenic
ACCTTGAATTGGTGATGACG+TGG 0.653143 2:-78121166 None:intergenic
TCTCAGGTGACATAAGAGGA+AGG 0.670240 2:-78122695 None:intergenic
ATCTCCAGAGTCGAAATCCG+AGG 0.671355 2:+78122928 MsG0280010994.01.T01:CDS
CACTGTGATAGTGAAAGTAG+GGG 0.673445 2:-78122739 None:intergenic
TAGGAGAGCTGGTCATACTG+AGG 0.694929 2:+78123006 MsG0280010994.01.T01:CDS
CCTTGAATTGGTGATGACGT+GGG 0.735027 2:-78121165 None:intergenic
GCTGTGAGAACAGAAAATGG+TGG 0.741200 2:-78123061 None:intergenic
CCCTACTTTCACTATCACAG+TGG 0.748231 2:+78122740 MsG0280010994.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTCAAAAAAATATTGATAT+AGG - Chr2:78122520-78122539 None:intergenic 15.0%
!! TATTCTTAGAAAATATTTGA+AGG - Chr2:78121092-78121111 None:intergenic 15.0%
!! TTGTGTAATATATTATTGTT+AGG + Chr2:78122838-78122857 MsG0280010994.01.T01:intron 15.0%
!!! GTTTCTTTTACTATAAATAT+AGG + Chr2:78121894-78121913 MsG0280010994.01.T01:intron 15.0%
!! ATAAAATATGTACCTTGAAT+TGG - Chr2:78121180-78121199 None:intergenic 20.0%
!!! AATGCTAAGTTTTTTAAACT+GGG - Chr2:78123124-78123143 None:intergenic 20.0%
!!! CAGATTTGTTACAATTTTAT+GGG + Chr2:78121870-78121889 MsG0280010994.01.T01:intron 20.0%
!!! GATGACATTTTATTAAGTAA+TGG + Chr2:78122471-78122490 MsG0280010994.01.T01:intron 20.0%
!!! TTTTTCAGAAACGTATTTTT+TGG + Chr2:78121846-78121865 MsG0280010994.01.T01:intron 20.0%
! AAATCAGTTATTGAGACAAT+TGG - Chr2:78123160-78123179 None:intergenic 25.0%
! ATGAAAACAACAATGTTGAA+GGG + Chr2:78122559-78122578 MsG0280010994.01.T01:CDS 25.0%
! ATTGCAATTCACTTTGATAT+TGG + Chr2:78122274-78122293 MsG0280010994.01.T01:intron 25.0%
! CAGTTTAAAAAACTTAGCAT+TGG + Chr2:78123123-78123142 MsG0280010994.01.T01:CDS 25.0%
! CCATAAAATTGTAACAAATC+TGG - Chr2:78121872-78121891 None:intergenic 25.0%
! GTGATTGAAGAAAATGAAAA+TGG + Chr2:78121406-78121425 MsG0280010994.01.T01:CDS 25.0%
! TATATGCAACAATCTACATT+AGG - Chr2:78122795-78122814 None:intergenic 25.0%
! TATTGTTAGGATGCAAAATA+TGG + Chr2:78122851-78122870 MsG0280010994.01.T01:intron 25.0%
! TATTTATTCAAAGCTTGCAT+CGG + Chr2:78121266-78121285 MsG0280010994.01.T01:intron 25.0%
! TTTATGATTAAACATGGATC+AGG + Chr2:78122627-78122646 MsG0280010994.01.T01:CDS 25.0%
! TTTCCTCTTAAGTATAGAAA+TGG + Chr2:78122974-78122993 MsG0280010994.01.T01:CDS 25.0%
!!! AATTTGGCTTTTTATGCTAT+TGG + Chr2:78121342-78121361 MsG0280010994.01.T01:exon 25.0%
!!! ATTTGGCTTTTTATGCTATT+GGG + Chr2:78121343-78121362 MsG0280010994.01.T01:exon 25.0%
!!! CAATGCTAAGTTTTTTAAAC+TGG - Chr2:78123125-78123144 None:intergenic 25.0%
!!! CCAGATTTGTTACAATTTTA+TGG + Chr2:78121869-78121888 MsG0280010994.01.T01:intron 25.0%
!!! TCTCAATAACTGATTTGATA+AGG + Chr2:78123164-78123183 MsG0280010994.01.T01:CDS 25.0%
AAGGGTTTAGAAATCAAACT+AGG + Chr2:78121960-78121979 MsG0280010994.01.T01:intron 30.0%
ACGTTACAAAGAGATTTCAA+TGG - Chr2:78122128-78122147 None:intergenic 30.0%
ACTCATCATAGTGTAAGATT+TGG + Chr2:78121297-78121316 MsG0280010994.01.T01:five_prime_UTR 30.0%
AGGGTTTAGAAATCAAACTA+GGG + Chr2:78121961-78121980 MsG0280010994.01.T01:intron 30.0%
CGTTACAAAGAGATTTCAAT+GGG - Chr2:78122127-78122146 None:intergenic 30.0%
GATGAAAACAACAATGTTGA+AGG + Chr2:78122558-78122577 MsG0280010994.01.T01:CDS 30.0%
GTGGCATTTATGATTAAACA+TGG + Chr2:78122621-78122640 MsG0280010994.01.T01:CDS 30.0%
TAACGTTACTCATCATATAG+TGG + Chr2:78122142-78122161 MsG0280010994.01.T01:intron 30.0%
TCTCAAAATAGTCTGATACA+AGG - Chr2:78121920-78121939 None:intergenic 30.0%
TGATGTTGAAGATGGAAATA+TGG + Chr2:78123090-78123109 MsG0280010994.01.T01:CDS 30.0%
TGTTGAAGGGAATCTTATAA+AGG + Chr2:78122572-78122591 MsG0280010994.01.T01:CDS 30.0%
TTGTGAAAGTGACTCAAAAT+TGG + Chr2:78121670-78121689 MsG0280010994.01.T01:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG + Chr2:78121984-78122003 MsG0280010994.01.T01:intron 30.0%
! CTTTCAGCAAACATCAATTT+TGG - Chr2:78121706-78121725 None:intergenic 30.0%
! TGTTTGCTGAAAGTACAAAT+CGG + Chr2:78121713-78121732 MsG0280010994.01.T01:intron 30.0%
! TTACTCATCATATAGTGGAA+CGG + Chr2:78122147-78122166 MsG0280010994.01.T01:intron 30.0%
! TTATGCTATTGGGTTTTCTA+AGG + Chr2:78121353-78121372 MsG0280010994.01.T01:exon 30.0%
!! ACTATTTTGAGAGAGATAGA+GGG + Chr2:78121928-78121947 MsG0280010994.01.T01:intron 30.0%
AAAATAACAGCACGCGAAAT+CGG - Chr2:78121830-78121849 None:intergenic 35.0%
AAATTTGATATCCCTGCCTA+TGG + Chr2:78121113-78121132 MsG0280010994.01.T01:five_prime_UTR 35.0%
AACACGAGTTCAACAAATAG+AGG - Chr2:78121234-78121253 None:intergenic 35.0%
AAGAATCTGTTTACCCAGTT+CGG - Chr2:78122206-78122225 None:intergenic 35.0%
AATCATAAATGCCACATCCT+TGG - Chr2:78122616-78122635 None:intergenic 35.0%
AATCCTAATAGTGTTTCCCA+AGG - Chr2:78122039-78122058 None:intergenic 35.0%
ACCATAACAAACTTGATGTG+TGG - Chr2:78122320-78122339 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG + Chr2:78122047-78122066 MsG0280010994.01.T01:intron 35.0%
AGTGACTCAAAATTGGAGTT+TGG + Chr2:78121677-78121696 MsG0280010994.01.T01:intron 35.0%
CCACCATTTCTATACTTAAG+AGG - Chr2:78122980-78122999 None:intergenic 35.0%
CCTCTTAAGTATAGAAATGG+TGG + Chr2:78122977-78122996 MsG0280010994.01.T01:CDS 35.0%
GAACAACAAGGTGAGAAATT+TGG + Chr2:78121326-78121345 MsG0280010994.01.T01:five_prime_UTR 35.0%
TCGTTACGTCTAATACATGT+TGG + Chr2:78121602-78121621 MsG0280010994.01.T01:intron 35.0%
TGCAAAATATGGAACTTCCA+CGG + Chr2:78122862-78122881 MsG0280010994.01.T01:CDS 35.0%
TTAAGAGGAAAAACATGACC+TGG - Chr2:78122965-78122984 None:intergenic 35.0%
TTCTTTGTAAGTGAAGCTGA+AGG + Chr2:78121487-78121506 MsG0280010994.01.T01:CDS 35.0%
! AATTCTAGCTAACCTTTCCT+TGG - Chr2:78121572-78121591 None:intergenic 35.0%
! TACTCATCATATAGTGGAAC+GGG + Chr2:78122148-78122167 MsG0280010994.01.T01:intron 35.0%
! TTCTGTAGATTTGGTTGCAT+TGG + Chr2:78123030-78123049 MsG0280010994.01.T01:CDS 35.0%
! TTTGAAGGTTGATTCACCTT+GGG + Chr2:78122020-78122039 MsG0280010994.01.T01:intron 35.0%
!! AGCGTCTAACGTTTTTAAGA+GGG - Chr2:78121434-78121453 None:intergenic 35.0%
!! CTATTTTGAGAGAGATAGAG+GGG + Chr2:78121929-78121948 MsG0280010994.01.T01:intron 35.0%
!! GACTATTTTGAGAGAGATAG+AGG + Chr2:78121927-78121946 MsG0280010994.01.T01:intron 35.0%
!! TAGCGTCTAACGTTTTTAAG+AGG - Chr2:78121435-78121454 None:intergenic 35.0%
!! TATTTTGAGAGAGATAGAGG+GGG + Chr2:78121930-78121949 MsG0280010994.01.T01:intron 35.0%
!! TCCACACATCAAGTTTGTTA+TGG + Chr2:78122316-78122335 MsG0280010994.01.T01:intron 35.0%
AAACTTGATGTGTGGAGCAA+GGG - Chr2:78122312-78122331 None:intergenic 40.0%
ACGTGGGAAATCAAAGACTA+GGG - Chr2:78121152-78121171 None:intergenic 40.0%
AGAGCTGTGAGAACAGAAAA+TGG - Chr2:78123067-78123086 None:intergenic 40.0%
AGCATCTCTTGTTAGTACCA+AGG + Chr2:78122596-78122615 MsG0280010994.01.T01:CDS 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + Chr2:78122053-78122072 MsG0280010994.01.T01:intron 40.0%
ATAGTGTAAGATTTGGCCTG+TGG + Chr2:78121304-78121323 MsG0280010994.01.T01:five_prime_UTR 40.0%
GACTCAAAATTGGAGTTTGG+AGG + Chr2:78121680-78121699 MsG0280010994.01.T01:intron 40.0%
GCAAAATATGGAACTTCCAC+GGG + Chr2:78122863-78122882 MsG0280010994.01.T01:CDS 40.0%
GCTCTTGTTGATGTTGAAGA+TGG + Chr2:78123082-78123101 MsG0280010994.01.T01:CDS 40.0%
GCTTTCTGTTCGGGAAAAAT+CGG + Chr2:78121781-78121800 MsG0280010994.01.T01:intron 40.0%
GGATCAGGAATAGTTTCTGT+TGG + Chr2:78122642-78122661 MsG0280010994.01.T01:CDS 40.0%
TAATGCATTACGCCAAGGAA+AGG + Chr2:78121557-78121576 MsG0280010994.01.T01:CDS 40.0%
TACTGAGGCTTCTGTAGATT+TGG + Chr2:78123021-78123040 MsG0280010994.01.T01:CDS 40.0%
TCACCTTGGGAAACACTATT+AGG + Chr2:78122033-78122052 MsG0280010994.01.T01:intron 40.0%
TCCTTGGCGTAATGCATTAA+GGG - Chr2:78121556-78121575 None:intergenic 40.0%
TCTTGTTAGTACCAAGGATG+TGG + Chr2:78122602-78122621 MsG0280010994.01.T01:CDS 40.0%
TGTCTCTTGGCAACAAACTA+GGG + Chr2:78121997-78122016 MsG0280010994.01.T01:intron 40.0%
TTCCTTGGCGTAATGCATTA+AGG - Chr2:78121557-78121576 None:intergenic 40.0%
TTCTGTTGGCATGAAAGAAG+AGG + Chr2:78122656-78122675 MsG0280010994.01.T01:CDS 40.0%
TTGTCTCTTGGCAACAAACT+AGG + Chr2:78121996-78122015 MsG0280010994.01.T01:intron 40.0%
! ACCACTGTGATAGTGAAAGT+AGG - Chr2:78122744-78122763 None:intergenic 40.0%
! ACTCATCATATAGTGGAACG+GGG + Chr2:78122149-78122168 MsG0280010994.01.T01:intron 40.0%
! ATAGAAATGGTGGAGTGCTT+AGG + Chr2:78122987-78123006 MsG0280010994.01.T01:CDS 40.0%
! CACTGTGATAGTGAAAGTAG+GGG - Chr2:78122742-78122761 None:intergenic 40.0%
! CCACTGTGATAGTGAAAGTA+GGG - Chr2:78122743-78122762 None:intergenic 40.0%
! GAAGACGTGTTTGATGATAG+TGG + Chr2:78121384-78121403 MsG0280010994.01.T01:CDS 40.0%
! GTTTGAAGGTTGATTCACCT+TGG + Chr2:78122019-78122038 MsG0280010994.01.T01:intron 40.0%
! TTGCTGAAAGTACAAATCGG+TGG + Chr2:78121716-78121735 MsG0280010994.01.T01:intron 40.0%
!! AATGGAAGAGTACTCCTTAG+AGG - Chr2:78121526-78121545 None:intergenic 40.0%
!! ACCTGGTTTTCTTAAGTCCT+CGG - Chr2:78122948-78122967 None:intergenic 40.0%
!! ATGGAAGAGTACTCCTTAGA+GGG - Chr2:78121525-78121544 None:intergenic 40.0%
!!! GCTATTGGGTTTTCTAAGGT+TGG + Chr2:78121357-78121376 MsG0280010994.01.T01:CDS 40.0%
AGGTCAATTTGGACCGAACT+GGG + Chr2:78122190-78122209 MsG0280010994.01.T01:intron 45.0%
ATTTGGCCTGTGGAACAACA+AGG + Chr2:78121314-78121333 MsG0280010994.01.T01:five_prime_UTR 45.0%
CAAACTTGATGTGTGGAGCA+AGG - Chr2:78122313-78122332 None:intergenic 45.0%
CCCTACTTTCACTATCACAG+TGG + Chr2:78122740-78122759 MsG0280010994.01.T01:CDS 45.0%
GAATCCTCTTCTTCAGTCTC+AGG - Chr2:78122714-78122733 None:intergenic 45.0%
GACGTGGGAAATCAAAGACT+AGG - Chr2:78121153-78121172 None:intergenic 45.0%
GCTGGGATTTGGGTAGAATT+AGG + Chr2:78122081-78122100 MsG0280010994.01.T01:intron 45.0%
GCTGTGAGAACAGAAAATGG+TGG - Chr2:78123064-78123083 None:intergenic 45.0%
GGATTTGGGTAGAATTAGGC+GGG + Chr2:78122085-78122104 MsG0280010994.01.T01:intron 45.0%
GGCAACAAACTAGGGTTTGA+AGG + Chr2:78122005-78122024 MsG0280010994.01.T01:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG + Chr2:78122084-78122103 MsG0280010994.01.T01:intron 45.0%
GGTCCAAATTGACCTAGTCT+GGG - Chr2:78122185-78122204 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG + Chr2:78122189-78122208 MsG0280010994.01.T01:intron 45.0%
TCAGTCTCAGGTGACATAAG+AGG - Chr2:78122702-78122721 None:intergenic 45.0%
TCCGAGGACTTAAGAAAACC+AGG + Chr2:78122944-78122963 MsG0280010994.01.T01:CDS 45.0%
TCTCAGGTGACATAAGAGGA+AGG - Chr2:78122698-78122717 None:intergenic 45.0%
TCTCCCAGACTAGGTCAATT+TGG + Chr2:78122179-78122198 MsG0280010994.01.T01:intron 45.0%
TTCTGTTCGGGAAAAATCGG+TGG + Chr2:78121784-78121803 MsG0280010994.01.T01:intron 45.0%
! CTCATCATATAGTGGAACGG+GGG + Chr2:78122150-78122169 MsG0280010994.01.T01:intron 45.0%
! GTAGATTTGGTTGCATTGGC+AGG + Chr2:78123034-78123053 MsG0280010994.01.T01:CDS 45.0%
! TGCATTAAGGGCATGCTCAA+TGG - Chr2:78121544-78121563 None:intergenic 45.0%
! TGGAAAATCGGTTGCCGATT+TGG + Chr2:78121745-78121764 MsG0280010994.01.T01:intron 45.0%
!! ACCTTGAATTGGTGATGACG+TGG - Chr2:78121169-78121188 None:intergenic 45.0%
!! CCTTGAATTGGTGATGACGT+GGG - Chr2:78121168-78121187 None:intergenic 45.0%
!! CGGCAACCGATTTTCCAAAT+CGG - Chr2:78121742-78121761 None:intergenic 45.0%
!! TTCTCACCTTGTTGTTCCAC+AGG - Chr2:78121323-78121342 None:intergenic 45.0%
AAGTCCTCGGATTTCGACTC+TGG - Chr2:78122935-78122954 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG + Chr2:78121941-78121960 MsG0280010994.01.T01:intron 50.0%
ATCTCCAGAGTCGAAATCCG+AGG + Chr2:78122928-78122947 MsG0280010994.01.T01:CDS 50.0%
ATGAAGCAGAGTCCATAGGC+AGG - Chr2:78121128-78121147 None:intergenic 50.0%
CCCACGTCATCACCAATTCA+AGG + Chr2:78121165-78121184 MsG0280010994.01.T01:five_prime_UTR 50.0%
CGGTCCAAATTGACCTAGTC+TGG - Chr2:78122186-78122205 None:intergenic 50.0%
GAGTCTCTTGGTTACGGAAG+AGG + Chr2:78122059-78122078 MsG0280010994.01.T01:intron 50.0%
GATAGAGGGGGCTGAAACAA+GGG + Chr2:78121942-78121961 MsG0280010994.01.T01:intron 50.0%
GCCCTTAATGCATTACGCCA+AGG + Chr2:78121552-78121571 MsG0280010994.01.T01:CDS 50.0%
GGAAAAATCGGTGGCCGATT+TGG + Chr2:78121793-78121812 MsG0280010994.01.T01:intron 50.0%
GGGAATGAAGCAGAGTCCAT+AGG - Chr2:78121132-78121151 None:intergenic 50.0%
GTACAAATCGGTGGCCGATT+TGG + Chr2:78121725-78121744 MsG0280010994.01.T01:intron 50.0%
GTACTCCTTAGAGGGACATC+TGG - Chr2:78121517-78121536 None:intergenic 50.0%
GTCACCTGAGACTGAAGAAG+AGG + Chr2:78122707-78122726 MsG0280010994.01.T01:CDS 50.0%
GTGATCCAGATGTCCCTCTA+AGG + Chr2:78121509-78121528 MsG0280010994.01.T01:CDS 50.0%
TACGGAAGAGGCTGGGATTT+GGG + Chr2:78122071-78122090 MsG0280010994.01.T01:intron 50.0%
TAGGAGAGCTGGTCATACTG+AGG + Chr2:78123006-78123025 MsG0280010994.01.T01:CDS 50.0%
TCTTGGTTACGGAAGAGGCT+GGG + Chr2:78122064-78122083 MsG0280010994.01.T01:intron 50.0%
TGAAGCAGAGTCCATAGGCA+GGG - Chr2:78121127-78121146 None:intergenic 50.0%
TGGAACTTCCACGGGTGTAT+CGG + Chr2:78122871-78122890 MsG0280010994.01.T01:CDS 50.0%
TTACGGAAGAGGCTGGGATT+TGG + Chr2:78122070-78122089 MsG0280010994.01.T01:intron 50.0%
! CCTTTGGGAGGCTTTCTGTT+CGG + Chr2:78121771-78121790 MsG0280010994.01.T01:intron 50.0%
! CTTTGGGAGGCTTTCTGTTC+GGG + Chr2:78121772-78121791 MsG0280010994.01.T01:intron 50.0%
!! CGGTGGCCGATTTGGAAAAT+CGG + Chr2:78121733-78121752 MsG0280010994.01.T01:intron 50.0%
!! TGGCCGATTTGGAAAATCGG+TGG + Chr2:78121736-78121755 MsG0280010994.01.T01:intron 50.0%
!! TTGCCGATTTGGCTGCCTTT+GGG + Chr2:78121756-78121775 MsG0280010994.01.T01:intron 50.0%
!!! CGGCCACCGATTTTCCAAAT+CGG - Chr2:78121810-78121829 None:intergenic 50.0%
CCGAACAGAAAGCCTCCCAA+AGG - Chr2:78121774-78121793 None:intergenic 55.0%
CCTCCCAAAGGCAGCCAAAT+CGG - Chr2:78121762-78121781 None:intergenic 55.0%
CTCTTGGTTACGGAAGAGGC+TGG + Chr2:78122063-78122082 MsG0280010994.01.T01:intron 55.0%
!! GTTGCCGATTTGGCTGCCTT+TGG + Chr2:78121755-78121774 MsG0280010994.01.T01:intron 55.0%
! GGTGGAGTGCTTAGGAGAGC+TGG + Chr2:78122995-78123014 MsG0280010994.01.T01:CDS 60.0%
!! CCGATTTGGCTGCCTTTGGG+AGG + Chr2:78121759-78121778 MsG0280010994.01.T01:intron 60.0%
!! TTCCACGGGTGTATCGGCTG+CGG + Chr2:78122877-78122896 MsG0280010994.01.T01:CDS 60.0%
ATCCGCAGCCGATACACCCG+TGG - Chr2:78122882-78122901 None:intergenic 65.0%
GGGCTGCTCTCTCCCAGACT+AGG + Chr2:78122170-78122189 MsG0280010994.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 78121018 78123189 78121018 ID=MsG0280010994.01;Name=MsG0280010994.01
Chr2 mRNA 78121018 78123189 78121018 ID=MsG0280010994.01.T01;Parent=MsG0280010994.01;Name=MsG0280010994.01.T01;_AED=0.50;_eAED=0.52;_QI=225|0.75|0.6|1|0.25|0.2|5|0|275
Chr2 exon 78121018 78121075 78121018 ID=MsG0280010994.01.T01:exon:11980;Parent=MsG0280010994.01.T01
Chr2 exon 78121096 78121186 78121096 ID=MsG0280010994.01.T01:exon:11981;Parent=MsG0280010994.01.T01
Chr2 exon 78121279 78121578 78121279 ID=MsG0280010994.01.T01:exon:11982;Parent=MsG0280010994.01.T01
Chr2 exon 78122488 78122761 78122488 ID=MsG0280010994.01.T01:exon:11983;Parent=MsG0280010994.01.T01
Chr2 exon 78122860 78123189 78122860 ID=MsG0280010994.01.T01:exon:11984;Parent=MsG0280010994.01.T01
Chr2 five_prime_UTR 78121018 78121075 78121018 ID=MsG0280010994.01.T01:five_prime_utr;Parent=MsG0280010994.01.T01
Chr2 five_prime_UTR 78121096 78121186 78121096 ID=MsG0280010994.01.T01:five_prime_utr;Parent=MsG0280010994.01.T01
Chr2 five_prime_UTR 78121279 78121354 78121279 ID=MsG0280010994.01.T01:five_prime_utr;Parent=MsG0280010994.01.T01
Chr2 CDS 78121355 78121578 78121355 ID=MsG0280010994.01.T01:cds;Parent=MsG0280010994.01.T01
Chr2 CDS 78122488 78122761 78122488 ID=MsG0280010994.01.T01:cds;Parent=MsG0280010994.01.T01
Chr2 CDS 78122860 78123189 78122860 ID=MsG0280010994.01.T01:cds;Parent=MsG0280010994.01.T01
Gene Sequence

>MsG0280010994.01.T01

ATGCTATTGGGTTTTCTAAGGTTGGAACTGAAGACGTGTTTGATGATAGTGGTGATTGAAGAAAATGAAAATGGATCCCTCTTAAAAACGTTAGACGCTACAAATGAAATAACTGATCAAGAAAATAGCGATTTCTTTGTAAGTGAAGCTGAAGGTGATCCAGATGTCCCTCTAAGGAGTACTCTTCCATTGAGCATGCCCTTAATGCATTACGCCAAGGAAAGTAATGGATTGATCTTGTTCATATCTAACACCTATATCAATATTTTTTTGAAGTTTGTAATCGTTGTAGATGATGAAAACAACAATGTTGAAGGGAATCTTATAAAGGCAGCATCTCTTGTTAGTACCAAGGATGTGGCATTTATGATTAAACATGGATCAGGAATAGTTTCTGTTGGCATGAAAGAAGAGGATCTTCAAAGATTAAACCTTCCTCTTATGTCACCTGAGACTGAAGAAGAGGATTCATCTGCCCCTACTTTCACTATCACAGTGGATGCAAAATATGGAACTTCCACGGGTGTATCGGCTGCGGATAGAGCAAAAACAATTCTTGCTTTATCATCTCCAGAGTCGAAATCCGAGGACTTAAGAAAACCAGGTCATGTTTTTCCTCTTAAGTATAGAAATGGTGGAGTGCTTAGGAGAGCTGGTCATACTGAGGCTTCTGTAGATTTGGTTGCATTGGCAGGCTTGCCACCATTTTCTGTTCTCACAGCTCTTGTTGATGTTGAAGATGGAAATATGGCATCTTTGCCCAGTTTAAAAAACTTAGCATTGGAATATAACTTACCAATTGTCTCAATAACTGATTTGATAAGGTAA

Protein sequence

>MsG0280010994.01.T01

MLLGFLRLELKTCLMIVVIEENENGSLLKTLDATNEITDQENSDFFVSEAEGDPDVPLRSTLPLSMPLMHYAKESNGLILFISNTYINIFLKFVIVVDDENNNVEGNLIKAASLVSTKDVAFMIKHGSGIVSVGMKEEDLQRLNLPLMSPETEEEDSSAPTFTITVDAKYGTSTGVSAADRAKTILALSSPESKSEDLRKPGHVFPLKYRNGGVLRRAGHTEASVDLVALAGLPPFSVLTALVDVEDGNMASLPSLKNLALEYNLPIVSITDLIR*